Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/g/gromacs/gromacs_2021.4-2_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/gromacs-2021.4-2zh2n0h_i/gromacs_2021.4-2_amd64.buildinfo Get source package info: gromacs=2021.4-2 Source URL: http://snapshot.notset.fr/mr/package/gromacs/2021.4-2/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.118 autoconf=2.71-2 automake=1:1.16.5-1 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.52 bash=5.1-3.1 binutils=2.37-8 binutils-common=2.37-8 binutils-x86-64-linux-gnu=2.37-8 bsdextrautils=2.37.2-4 bsdutils=1:2.37.2-4 build-essential=12.9 bzip2=1.0.8-4 chrpath=0.16-2+b1 cmake=3.21.4-1 cmake-data=3.21.4-1 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-10 dash=0.5.11+git20210903+057cd650a4ed-3 debconf=1.5.79 debhelper=13.5.2 debianutils=5.5-1 dh-autoreconf=20 dh-elpa-helper=2.0.9 dh-strip-nondeterminism=1.12.0-2 diffutils=1:3.7-5 distro-info-data=0.52 dpkg=1.20.9 dpkg-dev=1.20.9 dwz=0.14-1 emacsen-common=3.0.4 file=1:5.39-3 findutils=4.8.0-1 g++=4:11.2.0-2 g++-11=11.2.0-10 gcc=4:11.2.0-2 gcc-11=11.2.0-10 gcc-11-base=11.2.0-10 gettext=0.21-4 gettext-base=0.21-4 gfortran-11=11.2.0-10 grep=3.7-1 groff-base=1.22.4-7 gzip=1.10-4 hostname=3.23 ibverbs-providers=36.0-1 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libarchive-zip-perl=1.68-1 libarchive13=3.4.3-2+b1 libasan6=11.2.0-10 libatomic1=11.2.0-10 libattr1=1:2.5.1-1 libaudit-common=1:3.0.6-1 libaudit1=1:3.0.6-1 libbinutils=2.37-8 libblas-dev=3.10.0-1 libblas3=3.10.0-1 libblkid1=2.37.2-4 libboost-dev=1.74.0.3 libboost1.74-dev=1.74.0-12 libbrotli1=1.0.9-2+b2 libbsd0=0.11.3-1 libbz2-1.0=1.0.8-4 libc-bin=2.32-4 libc-dev-bin=2.32-4 libc6=2.32-4 libc6-dev=2.32-4 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcbor0.8=0.8.0-1 libcc1-0=11.2.0-10 libcom-err2=1.46.4-1 libcrypt-dev=1:4.4.25-2 libcrypt1=1:4.4.25-2 libctf-nobfd0=2.37-8 libctf0=2.37-8 libcurl4=7.79.1-1 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.260 libdebhelper-perl=13.5.2 libdpkg-perl=1.20.9 libedit2=3.1-20210910-1 libelf1=0.185-2 libevent-2.1-7=2.1.12-stable-1 libevent-core-2.1-7=2.1.12-stable-1 libevent-dev=2.1.12-stable-1 libevent-extra-2.1-7=2.1.12-stable-1 libevent-openssl-2.1-7=2.1.12-stable-1 libevent-pthreads-2.1-7=2.1.12-stable-1 libexpat1=2.4.1-3 libfabric1=1.11.0-2 libffi8=3.4.2-3 libfftw3-bin=3.3.8-2 libfftw3-dev=3.3.8-2 libfftw3-double3=3.3.8-2 libfftw3-long3=3.3.8-2 libfftw3-quad3=3.3.8-2 libfftw3-single3=3.3.8-2 libfido2-1=1.9.0-1 libfile-stripnondeterminism-perl=1.12.0-2 libgcc-11-dev=11.2.0-10 libgcc-s1=11.2.0-10 libgcrypt20=1.9.4-3+b1 libgdbm-compat4=1.22-1 libgdbm6=1.22-1 libgfortran-11-dev=11.2.0-10 libgfortran5=11.2.0-10 libgmp10=2:6.2.1+dfsg-2 libgnutls30=3.7.2-2 libgomp1=11.2.0-10 libgpg-error0=1.42-3 libgssapi-krb5-2=1.18.3-7 libhogweed6=3.7.3-1 libhwloc-dev=2.6.0-1 libhwloc-plugins=2.6.0-1 libhwloc15=2.6.0-1 libibverbs-dev=36.0-1 libibverbs1=36.0-1 libicu67=67.1-7 libidn2-0=2.3.2-2 libisl23=0.24-2 libitm1=11.2.0-10 libjs-jquery=3.5.1+dfsg+~3.5.5-8 libjs-jquery-ui=1.13.0+dfsg-1 libjsoncpp24=1.9.4-5 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 liblapack-dev=3.10.0-1 liblapack3=3.10.0-1 libldap-2.4-2=2.4.59+dfsg-1 liblsan0=11.2.0-10 libltdl-dev=2.4.6-15 libltdl7=2.4.6-15 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmd0=1.0.4-1 libmount1=2.37.2-4 libmpc3=1.2.1-1 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libncurses6=6.2+20210905-1 libncursesw6=6.2+20210905-1 libnettle8=3.7.3-1 libnghttp2-14=1.43.0-1 libnl-3-200=3.4.0-1+b1 libnl-3-dev=3.4.0-1+b1 libnl-route-3-200=3.4.0-1+b1 libnl-route-3-dev=3.4.0-1+b1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnuma-dev=2.0.14-3 libnuma1=2.0.14-3 libopenmpi-dev=4.1.2~rc1-5 libopenmpi3=4.1.2~rc1-5 libp11-kit0=0.24.0-5 libpam-modules=1.4.0-10 libpam-modules-bin=1.4.0-10 libpam-runtime=1.4.0-10 libpam0g=1.4.0-10 libpciaccess0=0.16-1 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.1-6 libpipeline1=1.5.4-1 libpmix-dev=4.1.1~rc5-1 libpmix2=4.1.1~rc5-1 libprocps8=2:3.3.17-5 libpsl5=0.21.0-1.2 libpsm-infinipath1=3.3+20.604758e7-6.1 libpsm2-2=11.2.185-1 libpthread-stubs0-dev=0.4-1 libpython3-stdlib=3.9.7-1 libpython3.9-minimal=3.9.8-1 libpython3.9-stdlib=3.9.8-1 libquadmath0=11.2.0-10 librdmacm1=36.0-1 libreadline8=8.1-2 librhash0=1.4.2-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg-2.3 libsasl2-modules-db=2.1.27+dfsg-2.3 libseccomp2=2.5.2-2 libselinux1=3.1-3+b1 libsemanage-common=3.1-2 libsemanage1=3.1-2 libsepol1=3.1-1 libsigsegv2=2.13-1 libsmartcols1=2.37.2-4 libsqlite3-0=3.36.0-2 libssh2-1=1.10.0-2 libssl1.1=1.1.1l-1 libstdc++-11-dev=11.2.0-10 libstdc++6=11.2.0-10 libsub-override-perl=0.09-2 libsystemd0=249.5-2 libtasn1-6=4.17.0-2 libtinfo6=6.2+20210905-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtsan0=11.2.0-10 libubsan1=11.2.0-10 libuchardet0=0.0.7-1 libucx0=1.11.2-1 libudev1=249.5-2 libunistring2=0.9.10-6 libuuid1=2.37.2-4 libuv1=1.42.0-1 libx11-6=2:1.7.2-2+b1 libx11-data=2:1.7.2-2 libx11-dev=2:1.7.2-2+b1 libxau-dev=1:1.0.9-1 libxau6=1:1.0.9-1 libxcb1=1.14-3 libxcb1-dev=1.14-3 libxdmcp-dev=1:1.1.2-3 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.4-1 libxml2=2.9.12+dfsg-5 libxnvctrl0=470.82.00-1 libzstd1=1.4.8+dfsg-3 linux-libc-dev=5.14.16-1 login=1:4.8.1-1.1 lsb-base=11.1.0 lsb-release=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-2 mawk=1.3.4.20200120-2 media-types=4.0.0 mpi-default-bin=1.14 mpi-default-dev=1.14 ncurses-base=6.2+20210905-1 ncurses-bin=6.2+20210905-1 ocl-icd-libopencl1=2.2.14-3 openmpi-bin=4.1.2~rc1-5 openmpi-common=4.1.2~rc1-5 openssh-client=1:8.7p1-1 passwd=1:4.8.1-1.1 patch=2.7.6-7 perl=5.32.1-6 perl-base=5.32.1-6 perl-modules-5.32=5.32.1-6 po-debconf=1.0.21+nmu1 procps=2:3.3.17-5 python3=3.9.7-1 python3-minimal=3.9.7-1 python3.9=3.9.8-1 python3.9-minimal=3.9.8-1 readline-common=8.1-2 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.00-1 tar=1.34+dfsg-1 tzdata=2021e-1 util-linux=2.37.2-4 x11proto-dev=2021.5-1 xorg-sgml-doctools=1:1.11-1.1 xtrans-dev=1.4.0-1 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211111T034125Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211111T034125Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211109T030457Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20211108T091209Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d gromacs=2021.4-2 && mkdir -p /build/gromacs-2CxdpC && dpkg-source --no-check -x /*.dsc /build/gromacs-2CxdpC/gromacs-2021.4 && chown -R builduser:builduser /build/gromacs-2CxdpC" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/gromacs-2CxdpC/gromacs-2021.4 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1636423211" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/gromacs-2CxdpC /tmp/gromacs-2021.4-2zh2n0h_i bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20211108T091209Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.RN1o7_CzAH as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.RN1o7_CzAH Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-4). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20211108T091209Z unstable/main amd64 libfakeroot amd64 1.26-1 [47.3 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211108T091209Z unstable/main amd64 fakeroot amd64 1.26-1 [87.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (637 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4663 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.26-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.26-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.26-1_amd64.deb ... Unpacking fakeroot (1.26-1) ... Setting up libfakeroot:amd64 (1.26-1) ... Setting up fakeroot (1.26-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.32-4) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211111T034125Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211111T034125Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211109T030457Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20211108T091209Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.RN1o7_CzAH Get:1 http://snapshot.notset.fr/archive/debian/20211111T034125Z bookworm InRelease [128 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211109T030457Z unstable InRelease [165 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20211108T091209Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20211111T034125Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20211111T034125Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20211111T034125Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20211111T034125Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20211111T034125Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20211111T034125Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20211111T034125Z bookworm/main Sources [11.7 MB] Get:5 http://snapshot.notset.fr/archive/debian/20211111T034125Z bookworm/main amd64 Packages [11.2 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20211109T030457Z unstable/main amd64 Packages Err:6 http://snapshot.notset.fr/archive/debian/20211109T030457Z unstable/main amd64 Packages 404 Not Found [IP: 10.13.0.253 80] Ign:6 http://snapshot.notset.fr/archive/debian/20211109T030457Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20211109T030457Z unstable/main amd64 Packages [12.0 MB] Fetched 35.1 MB in 35s (993 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.RN1o7_CzAH I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d gromacs=2021.4-2 && mkdir -p /build/gromacs-2CxdpC && dpkg-source --no-check -x /*.dsc /build/gromacs-2CxdpC/gromacs-2021.4 && chown -R builduser:builduser /build/gromacs-2CxdpC"' exec /tmp/mmdebstrap.RN1o7_CzAH Reading package lists... NOTICE: 'gromacs' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debichem-team/gromacs.git Please use: git clone https://salsa.debian.org/debichem-team/gromacs.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 86.6 MB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20211111T034125Z bookworm/main gromacs 2021.4-2 (dsc) [2985 B] Get:2 http://snapshot.notset.fr/archive/debian/20211111T034125Z bookworm/main gromacs 2021.4-2 (tar) [48.5 MB] Get:3 http://snapshot.notset.fr/archive/debian/20211111T034125Z bookworm/main gromacs 2021.4-2 (tar) [38.0 MB] Get:4 http://snapshot.notset.fr/archive/debian/20211111T034125Z bookworm/main gromacs 2021.4-2 (diff) [40.9 kB] Fetched 86.6 MB in 1min 21s (1063 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'gromacs_2021.4-2.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting gromacs in /build/gromacs-2CxdpC/gromacs-2021.4 dpkg-source: info: unpacking gromacs_2021.4.orig.tar.gz dpkg-source: info: unpacking gromacs_2021.4.orig-regressiontests.tar.gz dpkg-source: info: unpacking gromacs_2021.4-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying readme.patch dpkg-source: info: applying copyright-file.patch dpkg-source: info: applying disable-cpuinfotest.patch dpkg-source: info: applying mdrun-test-timeout.patch dpkg-source: info: applying local-mathjax.patch dpkg-source: info: applying mpi-tests-localhost.patch dpkg-source: info: applying i386-disable-specific-tests.patch dpkg-source: info: applying hppa-disable-ewaldunittest.patch dpkg-source: info: applying manual-image-conversion.patch dpkg-source: info: applying gammadistribution-test.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/gromacs-2CxdpC/gromacs-2021.4 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1636423211" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.RN1o7_CzAH dpkg-buildpackage: info: source package gromacs dpkg-buildpackage: info: source version 2021.4-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nicholas Breen dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh_testdir dh_testroot rm -rf build docs/doxygen/*.pyc dh_clean build-basic build-mpi build-manual configure-stamp debian/rules binary-arch dh_testdir (mkdir -p build/basic; cd build/basic; cmake \ /build/gromacs-2CxdpC/gromacs-2021.4 -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_RULE_MESSAGES=OFF -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-z,relro -Wl,-z,now" -DCMAKE_SKIP_RPATH=ON -DGMX_EXTERNAL_ZLIB=ON -DGMX_VERSION_STRING_OF_FORK="Debian-2021.4-2" -DGMX_GIT_VERSION_INFO=OFF -DGMX_HWLOC=ON -DGMXAPI=OFF -DGMX_SIMD=SSE4.1 -DGMX_MPI=OFF -DGMX_X11=ON -DGMX_INSTALL_LEGACY_API=ON ) -- The C compiler identification is GNU 11.2.0 -- The CXX compiler identification is GNU 11.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Python3: /usr/bin/python3.9 (found suitable version "3.9.8", minimum required is "3.6") found components: Interpreter -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Using default binary suffix: "" -- Using default library suffix: "" -- Looking for HWLOC -- Looking for hwloc_topology_init -- Looking for hwloc_topology_init - found -- hwloc version: -- Found HWLOC: /usr/lib/x86_64-linux-gnu/libhwloc.so (found suitable version "2.5.0", minimum required is "1.5") -- Found X11: /usr/include -- Looking for XOpenDisplay in /usr/lib/x86_64-linux-gnu/libX11.so -- Looking for XOpenDisplay in /usr/lib/x86_64-linux-gnu/libX11.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test TEST_ATOMICS -- Performing Test TEST_ATOMICS - Success -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- Looking for zlibVersion in /usr/lib/x86_64-linux-gnu/libz.so -- Looking for zlibVersion in /usr/lib/x86_64-linux-gnu/libz.so - found -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Detected build CPU vendor - Intel -- Detected build CPU brand - Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz -- Detected build CPU family - 6 -- Detected build CPU model - 79 -- Detected build CPU stepping - 1 -- Detected build CPU features - aes apic avx avx2 clfsh cmov cx8 cx16 f16c fma htt intel lahf mmx msr pcid pclmuldq pdpe1gb popcnt pse rdrnd rdtscp rtm sse2 sse3 sse4.1 sse4.2 ssse3 tdt x2apic -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Performing Test C_msse4_1_FLAG_ACCEPTED -- Performing Test C_msse4_1_FLAG_ACCEPTED - Success -- Performing Test C_msse4_1_COMPILE_WORKS -- Performing Test C_msse4_1_COMPILE_WORKS - Success -- Performing Test CXX_msse4_1_FLAG_ACCEPTED -- Performing Test CXX_msse4_1_FLAG_ACCEPTED - Success -- Performing Test CXX_msse4_1_COMPILE_WORKS -- Performing Test CXX_msse4_1_COMPILE_WORKS - Success -- Enabling SSE4.1 SIMD instructions using CXX flags: -msse4.1 -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- pkg-config could not detect fftw3f, trying generic detection -- Looking for fftwf_plan_many_dft in /usr/lib/x86_64-linux-gnu/libfftw3f.so -- Looking for fftwf_plan_many_dft in /usr/lib/x86_64-linux-gnu/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_r2c in /usr/lib/x86_64-linux-gnu/libfftw3f.so -- Looking for fftwf_plan_many_dft_r2c in /usr/lib/x86_64-linux-gnu/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_c2r in /usr/lib/x86_64-linux-gnu/libfftw3f.so -- Looking for fftwf_plan_many_dft_c2r in /usr/lib/x86_64-linux-gnu/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib/x86_64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib/x86_64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib/x86_64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib/x86_64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib/x86_64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib/x86_64-linux-gnu/libfftw3f.so - found -- Using external FFT library - FFTW3 -- Looking for sgemm_ -- Looking for sgemm_ - not found -- Looking for sgemm_ -- Looking for sgemm_ - not found -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/lib/x86_64-linux-gnu/libblas.so -- Looking for cheev_ -- Looking for cheev_ - not found -- Looking for cheev_ -- Looking for cheev_ - not found -- Looking for cheev_ -- Looking for cheev_ - not found -- Looking for cheev_ -- Looking for cheev_ - found -- Found LAPACK: /usr/lib/x86_64-linux-gnu/liblapack.so;/usr/lib/x86_64-linux-gnu/libblas.so -- Could not convert sample image, ImageMagick convert can not be used. A possible way to fix it can be found here: https://alexvanderbist.com/2018/fixing-imagick-error-unauthorized -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "1.6.1") -- Check if compiler accepts -pthread -- Check if compiler accepts -pthread - yes -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Performing Test HAS_NO_REDUNDANT_MOVE -- Performing Test HAS_NO_REDUNDANT_MOVE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_NO_NULL_CONVERSIONS -- Performing Test HAS_NO_NULL_CONVERSIONS - Success -- Performing Test HAS_NO_CLASS_MEMACCESS -- Performing Test HAS_NO_CLASS_MEMACCESS - Success -- Looking for inttypes.h -- Looking for inttypes.h - found -- Configuring done -- Generating done -- Build files have been written to: /build/gromacs-2CxdpC/gromacs-2021.4/build/basic (mkdir -p build/basic-dp; cd build/basic-dp; cmake \ /build/gromacs-2CxdpC/gromacs-2021.4 -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_RULE_MESSAGES=OFF -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-z,relro -Wl,-z,now" -DCMAKE_SKIP_RPATH=ON -DGMX_EXTERNAL_ZLIB=ON -DGMX_VERSION_STRING_OF_FORK="Debian-2021.4-2" -DGMX_GIT_VERSION_INFO=OFF -DGMX_HWLOC=ON -DGMXAPI=OFF -DGMX_SIMD=SSE4.1 -DGMX_MPI=OFF -DGMX_X11=ON -DGMX_DOUBLE=ON) -- The C compiler identification is GNU 11.2.0 -- The CXX compiler identification is GNU 11.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Python3: /usr/bin/python3.9 (found suitable version "3.9.8", minimum required is "3.6") found components: Interpreter -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Using default binary suffix: "_d" -- Using default library suffix: "_d" -- Looking for HWLOC -- Looking for hwloc_topology_init -- Looking for hwloc_topology_init - found -- hwloc version: -- Found HWLOC: /usr/lib/x86_64-linux-gnu/libhwloc.so (found suitable version "2.5.0", minimum required is "1.5") -- Found X11: /usr/include -- Looking for XOpenDisplay in /usr/lib/x86_64-linux-gnu/libX11.so -- Looking for XOpenDisplay in /usr/lib/x86_64-linux-gnu/libX11.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test TEST_ATOMICS -- Performing Test TEST_ATOMICS - Success -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- Looking for zlibVersion in /usr/lib/x86_64-linux-gnu/libz.so -- Looking for zlibVersion in /usr/lib/x86_64-linux-gnu/libz.so - found -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Detected build CPU vendor - Intel -- Detected build CPU brand - Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz -- Detected build CPU family - 6 -- Detected build CPU model - 79 -- Detected build CPU stepping - 1 -- Detected build CPU features - aes apic avx avx2 clfsh cmov cx8 cx16 f16c fma htt intel lahf mmx msr pcid pclmuldq pdpe1gb popcnt pse rdrnd rdtscp rtm sse2 sse3 sse4.1 sse4.2 ssse3 tdt x2apic -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Performing Test C_msse4_1_FLAG_ACCEPTED -- Performing Test C_msse4_1_FLAG_ACCEPTED - Success -- Performing Test C_msse4_1_COMPILE_WORKS -- Performing Test C_msse4_1_COMPILE_WORKS - Success -- Performing Test CXX_msse4_1_FLAG_ACCEPTED -- Performing Test CXX_msse4_1_FLAG_ACCEPTED - Success -- Performing Test CXX_msse4_1_COMPILE_WORKS -- Performing Test CXX_msse4_1_COMPILE_WORKS - Success -- Enabling SSE4.1 SIMD instructions using CXX flags: -msse4.1 -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- pkg-config could not detect fftw3, trying generic detection -- Looking for fftw_plan_many_dft in /usr/lib/x86_64-linux-gnu/libfftw3.so -- Looking for fftw_plan_many_dft in /usr/lib/x86_64-linux-gnu/libfftw3.so - found -- Looking for fftw_plan_many_dft_r2c in /usr/lib/x86_64-linux-gnu/libfftw3.so -- Looking for fftw_plan_many_dft_r2c in /usr/lib/x86_64-linux-gnu/libfftw3.so - found -- Looking for fftw_plan_many_dft_c2r in /usr/lib/x86_64-linux-gnu/libfftw3.so -- Looking for fftw_plan_many_dft_c2r in /usr/lib/x86_64-linux-gnu/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/lib/x86_64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/lib/x86_64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/lib/x86_64-linux-gnu/libfftw3.so -- Looking for fftw_have_sse in /usr/lib/x86_64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/lib/x86_64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/lib/x86_64-linux-gnu/libfftw3.so - found -- Using external FFT library - FFTW3 -- Looking for sgemm_ -- Looking for sgemm_ - not found -- Looking for sgemm_ -- Looking for sgemm_ - not found -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/lib/x86_64-linux-gnu/libblas.so -- Looking for cheev_ -- Looking for cheev_ - not found -- Looking for cheev_ -- Looking for cheev_ - not found -- Looking for cheev_ -- Looking for cheev_ - not found -- Looking for cheev_ -- Looking for cheev_ - found -- Found LAPACK: /usr/lib/x86_64-linux-gnu/liblapack.so;/usr/lib/x86_64-linux-gnu/libblas.so -- Could not convert sample image, ImageMagick convert can not be used. A possible way to fix it can be found here: https://alexvanderbist.com/2018/fixing-imagick-error-unauthorized -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "1.6.1") -- Check if compiler accepts -pthread -- Check if compiler accepts -pthread - yes -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Performing Test HAS_NO_REDUNDANT_MOVE -- Performing Test HAS_NO_REDUNDANT_MOVE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_NO_NULL_CONVERSIONS -- Performing Test HAS_NO_NULL_CONVERSIONS - Success -- Performing Test HAS_NO_CLASS_MEMACCESS -- Performing Test HAS_NO_CLASS_MEMACCESS - Success -- Looking for inttypes.h -- Looking for inttypes.h - found -- Configuring done -- Generating done -- Build files have been written to: /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp (mkdir -p build/mpi; cd build/mpi; CC=/usr/bin/mpicc CXX=/usr/bin/mpicxx cmake \ /build/gromacs-2CxdpC/gromacs-2021.4 -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_RULE_MESSAGES=OFF -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-z,relro -Wl,-z,now" -DCMAKE_SKIP_RPATH=ON -DGMX_EXTERNAL_ZLIB=ON -DGMX_VERSION_STRING_OF_FORK="Debian-2021.4-2" -DGMX_GIT_VERSION_INFO=OFF -DGMX_HWLOC=ON -DGMXAPI=OFF -DGMX_SIMD=SSE4.1 -DGMX_MPI=ON -DGMX_X11=OFF -DGMX_DEFAULT_SUFFIX=OFF -DMPIEXEC="/usr/bin/mpiexec" -DGMX_BUILD_MDRUN_ONLY=ON -DGMX_BINARY_SUFFIX="_mpi" -DGMX_LIBS_SUFFIX="_mpi") -- The C compiler identification is GNU 11.2.0 -- The CXX compiler identification is GNU 11.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/mpicc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/mpicxx - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Python3: /usr/bin/python3.9 (found suitable version "3.9.8", minimum required is "3.6") found components: Interpreter -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- MPI is not compatible with thread-MPI. Disabling thread-MPI. -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Defaulting to building static libraries -- Using manually set binary suffix: "_mpi" -- Using manually set library suffix: "_mpi" -- Looking for HWLOC -- Looking for hwloc_topology_init -- Looking for hwloc_topology_init - found -- hwloc version: -- Found HWLOC: /usr/lib/x86_64-linux-gnu/libhwloc.so (found suitable version "2.5.0", minimum required is "1.5") -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test TEST_ATOMICS -- Performing Test TEST_ATOMICS - Success -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- Looking for zlibVersion in /usr/lib/x86_64-linux-gnu/libz.so -- Looking for zlibVersion in /usr/lib/x86_64-linux-gnu/libz.so - found -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Detected build CPU vendor - Intel -- Detected build CPU brand - Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz -- Detected build CPU family - 6 -- Detected build CPU model - 79 -- Detected build CPU stepping - 1 -- Detected build CPU features - aes apic avx avx2 clfsh cmov cx8 cx16 f16c fma htt intel lahf mmx msr pcid pclmuldq pdpe1gb popcnt pse rdrnd rdtscp rtm sse2 sse3 sse4.1 sse4.2 ssse3 tdt x2apic -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Performing Test C_msse4_1_FLAG_ACCEPTED -- Performing Test C_msse4_1_FLAG_ACCEPTED - Success -- Performing Test C_msse4_1_COMPILE_WORKS -- Performing Test C_msse4_1_COMPILE_WORKS - Success -- Performing Test CXX_msse4_1_FLAG_ACCEPTED -- Performing Test CXX_msse4_1_FLAG_ACCEPTED - Success -- Performing Test CXX_msse4_1_COMPILE_WORKS -- Performing Test CXX_msse4_1_COMPILE_WORKS - Success -- Enabling SSE4.1 SIMD instructions using CXX flags: -msse4.1 -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- pkg-config could not detect fftw3f, trying generic detection -- Looking for fftwf_plan_many_dft in /usr/lib/x86_64-linux-gnu/libfftw3f.so -- Looking for fftwf_plan_many_dft in /usr/lib/x86_64-linux-gnu/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_r2c in /usr/lib/x86_64-linux-gnu/libfftw3f.so -- Looking for fftwf_plan_many_dft_r2c in /usr/lib/x86_64-linux-gnu/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_c2r in /usr/lib/x86_64-linux-gnu/libfftw3f.so -- Looking for fftwf_plan_many_dft_c2r in /usr/lib/x86_64-linux-gnu/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib/x86_64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib/x86_64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib/x86_64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib/x86_64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib/x86_64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib/x86_64-linux-gnu/libfftw3f.so - found -- Using external FFT library - FFTW3 -- Looking for sgemm_ -- Looking for sgemm_ - not found -- Looking for sgemm_ -- Looking for sgemm_ - not found -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/lib/x86_64-linux-gnu/libblas.so -- Looking for cheev_ -- Looking for cheev_ - not found -- Looking for cheev_ -- Looking for cheev_ - not found -- Looking for cheev_ -- Looking for cheev_ - not found -- Looking for cheev_ -- Looking for cheev_ - found -- Found LAPACK: /usr/lib/x86_64-linux-gnu/liblapack.so;/usr/lib/x86_64-linux-gnu/libblas.so -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Performing Test HAS_NO_REDUNDANT_MOVE -- Performing Test HAS_NO_REDUNDANT_MOVE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_NO_NULL_CONVERSIONS -- Performing Test HAS_NO_NULL_CONVERSIONS - Success -- Performing Test HAS_NO_CLASS_MEMACCESS -- Performing Test HAS_NO_CLASS_MEMACCESS - Success -- Looking for inttypes.h -- Looking for inttypes.h - found -- The mdrun-only build is deprecated -- Configuring done -- Generating done -- Build files have been written to: /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi (mkdir -p build/mpi-dp; cd build/mpi-dp; CC=/usr/bin/mpicc CXX=/usr/bin/mpicxx cmake \ /build/gromacs-2CxdpC/gromacs-2021.4 -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_RULE_MESSAGES=OFF -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-z,relro -Wl,-z,now" -DCMAKE_SKIP_RPATH=ON -DGMX_EXTERNAL_ZLIB=ON -DGMX_VERSION_STRING_OF_FORK="Debian-2021.4-2" -DGMX_GIT_VERSION_INFO=OFF -DGMX_HWLOC=ON -DGMXAPI=OFF -DGMX_SIMD=SSE4.1 -DGMX_MPI=ON -DGMX_X11=OFF -DGMX_DEFAULT_SUFFIX=OFF -DMPIEXEC="/usr/bin/mpiexec" -DGMX_BUILD_MDRUN_ONLY=ON -DGMX_DOUBLE=ON -DGMX_BINARY_SUFFIX="_mpi_d" -DGMX_LIBS_SUFFIX="_mpi_d") -- The C compiler identification is GNU 11.2.0 -- The CXX compiler identification is GNU 11.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/mpicc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/mpicxx - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Python3: /usr/bin/python3.9 (found suitable version "3.9.8", minimum required is "3.6") found components: Interpreter -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- MPI is not compatible with thread-MPI. Disabling thread-MPI. -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Defaulting to building static libraries -- Using manually set binary suffix: "_mpi_d" -- Using manually set library suffix: "_mpi_d" -- Looking for HWLOC -- Looking for hwloc_topology_init -- Looking for hwloc_topology_init - found -- hwloc version: -- Found HWLOC: /usr/lib/x86_64-linux-gnu/libhwloc.so (found suitable version "2.5.0", minimum required is "1.5") -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test TEST_ATOMICS -- Performing Test TEST_ATOMICS - Success -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- Looking for zlibVersion in /usr/lib/x86_64-linux-gnu/libz.so -- Looking for zlibVersion in /usr/lib/x86_64-linux-gnu/libz.so - found -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Detected build CPU vendor - Intel -- Detected build CPU brand - Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz -- Detected build CPU family - 6 -- Detected build CPU model - 79 -- Detected build CPU stepping - 1 -- Detected build CPU features - aes apic avx avx2 clfsh cmov cx8 cx16 f16c fma htt intel lahf mmx msr pcid pclmuldq pdpe1gb popcnt pse rdrnd rdtscp rtm sse2 sse3 sse4.1 sse4.2 ssse3 tdt x2apic -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Performing Test C_msse4_1_FLAG_ACCEPTED -- Performing Test C_msse4_1_FLAG_ACCEPTED - Success -- Performing Test C_msse4_1_COMPILE_WORKS -- Performing Test C_msse4_1_COMPILE_WORKS - Success -- Performing Test CXX_msse4_1_FLAG_ACCEPTED -- Performing Test CXX_msse4_1_FLAG_ACCEPTED - Success -- Performing Test CXX_msse4_1_COMPILE_WORKS -- Performing Test CXX_msse4_1_COMPILE_WORKS - Success -- Enabling SSE4.1 SIMD instructions using CXX flags: -msse4.1 -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- pkg-config could not detect fftw3, trying generic detection -- Looking for fftw_plan_many_dft in /usr/lib/x86_64-linux-gnu/libfftw3.so -- Looking for fftw_plan_many_dft in /usr/lib/x86_64-linux-gnu/libfftw3.so - found -- Looking for fftw_plan_many_dft_r2c in /usr/lib/x86_64-linux-gnu/libfftw3.so -- Looking for fftw_plan_many_dft_r2c in /usr/lib/x86_64-linux-gnu/libfftw3.so - found -- Looking for fftw_plan_many_dft_c2r in /usr/lib/x86_64-linux-gnu/libfftw3.so -- Looking for fftw_plan_many_dft_c2r in /usr/lib/x86_64-linux-gnu/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/lib/x86_64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/lib/x86_64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/lib/x86_64-linux-gnu/libfftw3.so -- Looking for fftw_have_sse in /usr/lib/x86_64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/lib/x86_64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/lib/x86_64-linux-gnu/libfftw3.so - found -- Using external FFT library - FFTW3 -- Looking for sgemm_ -- Looking for sgemm_ - not found -- Looking for sgemm_ -- Looking for sgemm_ - not found -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/lib/x86_64-linux-gnu/libblas.so -- Looking for cheev_ -- Looking for cheev_ - not found -- Looking for cheev_ -- Looking for cheev_ - not found -- Looking for cheev_ -- Looking for cheev_ - not found -- Looking for cheev_ -- Looking for cheev_ - found -- Found LAPACK: /usr/lib/x86_64-linux-gnu/liblapack.so;/usr/lib/x86_64-linux-gnu/libblas.so -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Performing Test HAS_NO_REDUNDANT_MOVE -- Performing Test HAS_NO_REDUNDANT_MOVE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_NO_NULL_CONVERSIONS -- Performing Test HAS_NO_NULL_CONVERSIONS - Success -- Performing Test HAS_NO_CLASS_MEMACCESS -- Performing Test HAS_NO_CLASS_MEMACCESS - Success -- Looking for inttypes.h -- Looking for inttypes.h - found -- The mdrun-only build is deprecated -- Configuring done -- Generating done -- Build files have been written to: /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp touch configure-stamp dh_testdir /usr/bin/make -j10 -C build/basic make[1]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' /usr/bin/cmake -S/build/gromacs-2CxdpC/gromacs-2021.4 -B/build/gromacs-2CxdpC/gromacs-2021.4/build/basic --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/CMakeFiles /build/gromacs-2CxdpC/gromacs-2021.4/build/basic//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/selection /build/gromacs-2CxdpC/gromacs-2021.4/build/basic /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs/selection /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/build/basic /build/gromacs-2CxdpC/gromacs-2021.4/build/basic /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/programs/CMakeFiles/gmx_objlib.dir/build.make src/programs/CMakeFiles/gmx_objlib.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs 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/build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator /build/gromacs-2CxdpC/gromacs-2021.4/build/basic /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs/modularsimulator /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/programs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/programs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/programs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/programs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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src/programs/CMakeFiles/view_objlib.dir/view/buttons.cpp.o -MF CMakeFiles/view_objlib.dir/view/buttons.cpp.o.d -o CMakeFiles/view_objlib.dir/view/buttons.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/programs/view/buttons.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -MF 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CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/src/lock.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/src/pthreads.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++17 -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -MF CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o.d -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/linearalgebra/gmx_arpack.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/compression/bwt.c cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/src/system_error.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/compression/coder.c cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++17 -MD -MT src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o -MF CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o.d -o CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/programs/legacymodules.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++17 -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o -MF CMakeFiles/linearalgebra.dir/matrix.cpp.o.d -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/linearalgebra/matrix.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/compression/dict.c cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/programs/CMakeFiles/view_objlib.dir/view/dialogs.cpp.o -MF CMakeFiles/view_objlib.dir/view/dialogs.cpp.o.d -o CMakeFiles/view_objlib.dir/view/dialogs.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/programs/view/dialogs.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers 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-MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/src/alltoall.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/compression/huffman.c make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++17 -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/nrjac.cpp.o -MF CMakeFiles/linearalgebra.dir/nrjac.cpp.o.d -o CMakeFiles/linearalgebra.dir/nrjac.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/linearalgebra/nrjac.cpp [ 0%] Built target gmx_objlib cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation 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CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/src/p2p_protocol.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -MF CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/compositesimulatorelement.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/compression/huffmem.c cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/compression/lz77.c cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/src/barrier.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/src/p2p_send_recv.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/programs/CMakeFiles/view_objlib.dir/view/fgrid.cpp.o -MF CMakeFiles/view_objlib.dir/view/fgrid.cpp.o.d -o CMakeFiles/view_objlib.dir/view/fgrid.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/programs/view/fgrid.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/src/bcast.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/compression/merge_sort.c cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/compression/mtf.c make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' [ 0%] Built target lmfit_objlib cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/programs/CMakeFiles/view_objlib.dir/view/filter.cpp.o -MF CMakeFiles/view_objlib.dir/view/filter.cpp.o.d -o CMakeFiles/view_objlib.dir/view/filter.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/programs/view/filter.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/src/p2p_wait.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 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src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/src/profile.cpp make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD 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CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/src/event.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/src/reduce_fast.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/compression/rle.c cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/compression/tng_compress.c cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/src/gather.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/src/scatter.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/src/group.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ 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/build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/src/topology.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/src/list.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 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src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/src/once.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o -MF 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/build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/signallers.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/lib/tng_io.c cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o -MF CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o.d -o CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/simulatoralgorithm.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/programs/CMakeFiles/view_objlib.dir/view/nleg.cpp.o -MF CMakeFiles/view_objlib.dir/view/nleg.cpp.o.d -o CMakeFiles/view_objlib.dir/view/nleg.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/programs/view/nleg.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -MF CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o.d -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/statepropagatordata.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -MF CMakeFiles/modularsimulator.dir/topologyholder.cpp.o.d -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/topologyholder.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/programs/CMakeFiles/view_objlib.dir/view/nmol.cpp.o -MF CMakeFiles/view_objlib.dir/view/nmol.cpp.o.d -o CMakeFiles/view_objlib.dir/view/nmol.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/programs/view/nmol.cpp make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' [ 3%] Built target linearalgebra cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++17 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CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o.d -o CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/velocityscalingtemperaturecoupling.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/programs/CMakeFiles/view_objlib.dir/view/popup.cpp.o -MF CMakeFiles/view_objlib.dir/view/popup.cpp.o.d -o CMakeFiles/view_objlib.dir/view/popup.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/programs/view/popup.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/programs/CMakeFiles/view_objlib.dir/view/pulldown.cpp.o -MF CMakeFiles/view_objlib.dir/view/pulldown.cpp.o.d -o CMakeFiles/view_objlib.dir/view/pulldown.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/programs/view/pulldown.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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src/programs/CMakeFiles/view_objlib.dir/view/xdlg.cpp.o -MF CMakeFiles/view_objlib.dir/view/xdlg.cpp.o.d -o CMakeFiles/view_objlib.dir/view/xdlg.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/programs/view/xdlg.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/programs/CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o -MF CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o.d -o CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/programs/view/xdlghi.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/programs/CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o -MF CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o.d -o CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/programs/view/xdlgitem.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/programs/CMakeFiles/view_objlib.dir/view/xmb.cpp.o -MF CMakeFiles/view_objlib.dir/view/xmb.cpp.o.d -o CMakeFiles/view_objlib.dir/view/xmb.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/programs/view/xmb.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/programs/CMakeFiles/view_objlib.dir/view/xutil.cpp.o -MF CMakeFiles/view_objlib.dir/view/xutil.cpp.o.d -o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/programs/view/xutil.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/lib/md5.c make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' [ 6%] Built target tng_io_obj make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' [ 7%] Built target view_objlib make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' [ 9%] Built target modularsimulator /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/VersionInfo.cmake -D VERSION_CMAKEIN=/build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI= -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /build/gromacs-2CxdpC/gromacs-2021.4/cmake/gmxConfigureVersionInfo.cmake cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -MF CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/alignedallocator.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o -MF CMakeFiles/libgromacs.dir/utility/any.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/any.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/any.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -MF CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/basenetwork.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -MF CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/baseversion.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o -MF CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/binaryinformation.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o -MF CMakeFiles/libgromacs.dir/utility/compare.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/compare.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/compare.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -MF CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/coolstuff.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 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-ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -MF CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/datafilefinder.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem 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/usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -MF CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/errorformat.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -MF CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/exceptions.cpp In file included from /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/binaryinformation.cpp:77: /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/buildinfo.h:75: warning: "HWLOC_VERSION" redefined 75 | #define HWLOC_VERSION "2.5.0" | In file included from /usr/include/hwloc.h:56, from /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/binaryinformation.cpp:64: /usr/include/x86_64-linux-gnu/hwloc/autogen/config.h:15: note: this is the location of the previous definition 15 | #define HWLOC_VERSION "2.6.0" | cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -MF CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/fatalerror.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -MF CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o 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-O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o -MF CMakeFiles/libgromacs.dir/utility/futil.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/futil.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -MF CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/gmxassert.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -MF CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/gmxomp.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -MF CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/ikeyvaluetreeerror.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o -MF CMakeFiles/libgromacs.dir/utility/init.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/init.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o -MF CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/inmemoryserializer.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -MF CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/int64_to_int.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 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cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -MF 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/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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-Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c 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-I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c 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-I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o.d -o 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-Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/gmxpreprocess/grompp.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 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/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/gmxpreprocess/hackblock.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/gmxpreprocess/hizzie.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/gmxpreprocess/insert_molecules.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/gmxpreprocess/makeexclusiondistances.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/gmxpreprocess/nm2type.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/gmxpreprocess/pdb2gmx.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/gmxpreprocess/pdb2top.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/gmxpreprocess/pgutil.cpp In file included from /usr/include/c++/11/string:40, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/streambuf:41, from /usr/include/c++/11/bits/streambuf_iterator.h:35, from /usr/include/c++/11/iterator:66, from /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/arrayref.h:54, from /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/gmxpreprocess/h_db.h:45, from /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/gmxpreprocess/h_db.cpp:41: In static member function ‘static constexpr std::size_t std::char_traits::length(const char_type*)’, inlined from ‘std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::assign(const _CharT*) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/11/bits/basic_string.h:1458:19, inlined from ‘std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(const _CharT*) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/11/bits/basic_string.h:689:28, inlined from ‘void read_ab(char*, const char*, MoleculePatch*)’ at /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/gmxpreprocess/h_db.cpp:115:25: /usr/include/c++/11/bits/char_traits.h:371:32: warning: ‘long unsigned int __builtin_strlen(const char*)’ reading 1 or more bytes from a region of size 0 [-Wstringop-overread] 371 | return __builtin_strlen(__s); | ~~~~~~~~~~~~~~~~^~~~~ /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/gmxpreprocess/h_db.cpp: In function ‘void read_ab(char*, const char*, MoleculePatch*)’: /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/gmxpreprocess/h_db.cpp:88:10: note: at offset 48 into source object ‘a’ of size 48 88 | char a[4][12]; | ^ cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/gmxpreprocess/readir.cpp cd 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modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o 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CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o selection/CMakeFiles/scanner.dir/parser.cpp.o selection/CMakeFiles/scanner.dir/scanner.cpp.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so -lpthread -lm /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/liblapack.so -lpthread -lm /usr/lib/gcc/x86_64-linux-gnu/11/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libgromacs.so.6.0.0 ../../lib/libgromacs.so.6 ../../lib/libgromacs.so make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' [ 95%] Built target libgromacs /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend /usr/bin/make -f api/nblib/CMakeFiles/nblib.dir/build.make api/nblib/CMakeFiles/nblib.dir/depend /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/share/template /build/gromacs-2CxdpC/gromacs-2021.4/build/basic /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/share/template /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/share/template/CMakeFiles/template.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib /build/gromacs-2CxdpC/gromacs-2021.4/build/basic /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/api/nblib /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/api/nblib/CMakeFiles/nblib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/programs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/programs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' /usr/bin/make -f api/nblib/CMakeFiles/nblib.dir/build.make api/nblib/CMakeFiles/nblib.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/share/template && /usr/bin/c++ -DGMX_DOUBLE=0 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -std=c++17 -MD -MT share/template/CMakeFiles/template.dir/template.cpp.o -MF CMakeFiles/template.dir/template.cpp.o.d -o CMakeFiles/template.dir/template.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/share/template/template.cpp make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/api/nblib && /usr/bin/c++ -DGMX_DOUBLE=0 -Dnblib_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/api -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT api/nblib/CMakeFiles/nblib.dir/box.cpp.o -MF CMakeFiles/nblib.dir/box.cpp.o.d -o CMakeFiles/nblib.dir/box.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib/box.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/api/nblib && /usr/bin/c++ -DGMX_DOUBLE=0 -Dnblib_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/api -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT api/nblib/CMakeFiles/nblib.dir/forcecalculator.cpp.o -MF CMakeFiles/nblib.dir/forcecalculator.cpp.o.d -o CMakeFiles/nblib.dir/forcecalculator.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib/forcecalculator.cpp make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmx.dir/link.txt --verbose=1 cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/api/nblib && /usr/bin/c++ -DGMX_DOUBLE=0 -Dnblib_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/api -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT api/nblib/CMakeFiles/nblib.dir/gmxcalculator.cpp.o -MF CMakeFiles/nblib.dir/gmxcalculator.cpp.o.d -o CMakeFiles/nblib.dir/gmxcalculator.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib/gmxcalculator.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/api/nblib && /usr/bin/c++ -DGMX_DOUBLE=0 -Dnblib_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/api -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT api/nblib/CMakeFiles/nblib.dir/gmxsetup.cpp.o -MF CMakeFiles/nblib.dir/gmxsetup.cpp.o.d -o CMakeFiles/nblib.dir/gmxsetup.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib/gmxsetup.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/api/nblib && /usr/bin/c++ -DGMX_DOUBLE=0 -Dnblib_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/api -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT api/nblib/CMakeFiles/nblib.dir/integrator.cpp.o -MF CMakeFiles/nblib.dir/integrator.cpp.o.d -o CMakeFiles/nblib.dir/integrator.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib/integrator.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/api/nblib && /usr/bin/c++ -DGMX_DOUBLE=0 -Dnblib_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/api -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT api/nblib/CMakeFiles/nblib.dir/interactions.cpp.o -MF CMakeFiles/nblib.dir/interactions.cpp.o.d -o CMakeFiles/nblib.dir/interactions.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib/interactions.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/api/nblib && /usr/bin/c++ -DGMX_DOUBLE=0 -Dnblib_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/api -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT api/nblib/CMakeFiles/nblib.dir/molecules.cpp.o -MF CMakeFiles/nblib.dir/molecules.cpp.o.d -o CMakeFiles/nblib.dir/molecules.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib/molecules.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/api/nblib && /usr/bin/c++ -DGMX_DOUBLE=0 -Dnblib_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/api -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT api/nblib/CMakeFiles/nblib.dir/particlesequencer.cpp.o -MF CMakeFiles/nblib.dir/particlesequencer.cpp.o.d -o CMakeFiles/nblib.dir/particlesequencer.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib/particlesequencer.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmx_objlib.dir/gmx.cpp.o CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o CMakeFiles/view_objlib.dir/view/3dview.cpp.o CMakeFiles/view_objlib.dir/view/buttons.cpp.o CMakeFiles/view_objlib.dir/view/dialogs.cpp.o CMakeFiles/view_objlib.dir/view/fgrid.cpp.o CMakeFiles/view_objlib.dir/view/filter.cpp.o CMakeFiles/view_objlib.dir/view/logo.cpp.o CMakeFiles/view_objlib.dir/view/manager.cpp.o CMakeFiles/view_objlib.dir/view/molps.cpp.o CMakeFiles/view_objlib.dir/view/nleg.cpp.o CMakeFiles/view_objlib.dir/view/nmol.cpp.o CMakeFiles/view_objlib.dir/view/popup.cpp.o CMakeFiles/view_objlib.dir/view/pulldown.cpp.o CMakeFiles/view_objlib.dir/view/view.cpp.o CMakeFiles/view_objlib.dir/view/x11.cpp.o CMakeFiles/view_objlib.dir/view/xdlg.cpp.o CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o CMakeFiles/view_objlib.dir/view/xmb.cpp.o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -o ../../bin/gmx ../../lib/libgromacs.so.6.0.0 /usr/lib/x86_64-linux-gnu/libX11.so -lm /usr/lib/gcc/x86_64-linux-gnu/11/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' [ 95%] Built target gmx cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/api/nblib && /usr/bin/c++ -DGMX_DOUBLE=0 -Dnblib_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/api -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT api/nblib/CMakeFiles/nblib.dir/particletype.cpp.o -MF CMakeFiles/nblib.dir/particletype.cpp.o.d -o CMakeFiles/nblib.dir/particletype.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib/particletype.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/api/nblib && /usr/bin/c++ -DGMX_DOUBLE=0 -Dnblib_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/api -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 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CMakeFiles/nblib.dir/topologyhelpers.cpp.o.d -o CMakeFiles/nblib.dir/topologyhelpers.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib/topologyhelpers.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/api/nblib && /usr/bin/c++ -DGMX_DOUBLE=0 -Dnblib_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/api -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT api/nblib/CMakeFiles/nblib.dir/topology.cpp.o -MF CMakeFiles/nblib.dir/topology.cpp.o.d -o CMakeFiles/nblib.dir/topology.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib/topology.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/api/nblib && /usr/bin/c++ -DGMX_DOUBLE=0 -Dnblib_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/api -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT api/nblib/CMakeFiles/nblib.dir/listed_forces/calculator.cpp.o -MF CMakeFiles/nblib.dir/listed_forces/calculator.cpp.o.d -o CMakeFiles/nblib.dir/listed_forces/calculator.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib/listed_forces/calculator.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template.dir/link.txt --verbose=1 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api/nblib/CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o -MF CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o.d -o CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib/listed_forces/transformations.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/api/nblib && /usr/bin/c++ -DGMX_DOUBLE=0 -Dnblib_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/api -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT api/nblib/CMakeFiles/nblib.dir/util/setup.cpp.o -MF CMakeFiles/nblib.dir/util/setup.cpp.o.d -o CMakeFiles/nblib.dir/util/setup.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib/util/setup.cpp make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' [ 95%] Built target template cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/api/nblib && /usr/bin/cmake -E cmake_link_script CMakeFiles/nblib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libnblib.so.0 -o ../../lib/libnblib.so.0.1.0 CMakeFiles/nblib.dir/box.cpp.o CMakeFiles/nblib.dir/forcecalculator.cpp.o CMakeFiles/nblib.dir/gmxcalculator.cpp.o CMakeFiles/nblib.dir/gmxsetup.cpp.o CMakeFiles/nblib.dir/integrator.cpp.o CMakeFiles/nblib.dir/interactions.cpp.o CMakeFiles/nblib.dir/molecules.cpp.o CMakeFiles/nblib.dir/particlesequencer.cpp.o CMakeFiles/nblib.dir/particletype.cpp.o CMakeFiles/nblib.dir/simulationstate.cpp.o CMakeFiles/nblib.dir/topologyhelpers.cpp.o CMakeFiles/nblib.dir/topology.cpp.o CMakeFiles/nblib.dir/listed_forces/calculator.cpp.o CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o CMakeFiles/nblib.dir/util/setup.cpp.o ../../lib/libgromacs.so.6.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/11/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/api/nblib && /usr/bin/cmake -E cmake_symlink_library ../../lib/libnblib.so.0.1.0 ../../lib/libnblib.so.0 ../../lib/libnblib.so make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' [ 96%] Built target nblib /usr/bin/make -f api/nblib/samples/CMakeFiles/methane-water-integration.dir/build.make api/nblib/samples/CMakeFiles/methane-water-integration.dir/depend /usr/bin/make -f api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build.make api/nblib/samples/CMakeFiles/argon-forces-integration.dir/depend make[3]: Entering directory 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'/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' /usr/bin/cmake -E cmake_progress_start /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/CMakeFiles 0 make[1]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' /usr/bin/make -j10 -C build/basic-dp make[1]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' /usr/bin/cmake -S/build/gromacs-2CxdpC/gromacs-2021.4 -B/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/CMakeFiles /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make 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/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/selection /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs/selection /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend /usr/bin/make -f src/programs/CMakeFiles/gmx_objlib.dir/build.make src/programs/CMakeFiles/gmx_objlib.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs/modularsimulator /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/linearalgebra /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs/linearalgebra /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/programs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/programs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/programs/CMakeFiles/gmx_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/programs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/programs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/programs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/programs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -MF CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o.d -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/checkpointhelper.cpp make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -std=c++17 -MD -MT src/gromacs/CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -MF CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o.d -o 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/build/gromacs-2CxdpC/gromacs-2021.4/cmake/gmxGenerateVersionInfoWithoutGit.cmake make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++17 -MD -MT src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o -MF CMakeFiles/scanner.dir/parser.cpp.o.d -o CMakeFiles/scanner.dir/parser.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/selection/parser.cpp /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++17 -MD -MT src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o -MF CMakeFiles/gmx_objlib.dir/gmx.cpp.o.d -o CMakeFiles/gmx_objlib.dir/gmx.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/programs/gmx.cpp make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/compression/bwlzh.c make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++17 -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -MF CMakeFiles/linearalgebra.dir/eigensolver.cpp.o.d -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/linearalgebra/eigensolver.cpp make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/src/errhandler.cpp make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/programs/CMakeFiles/view_objlib.dir/view/3dview.cpp.o -MF CMakeFiles/view_objlib.dir/view/3dview.cpp.o.d -o CMakeFiles/view_objlib.dir/view/3dview.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/programs/view/3dview.cpp make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -MF CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o.d -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/programs/mdrun/mdrun.cpp make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' [ 0%] Built target release-version-info cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/programs/CMakeFiles/view_objlib.dir/view/buttons.cpp.o -MF CMakeFiles/view_objlib.dir/view/buttons.cpp.o.d -o CMakeFiles/view_objlib.dir/view/buttons.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/programs/view/buttons.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/src/tmpi_malloc.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -MF CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o.d -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/linearalgebra/gmx_arpack.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/src/system_error.cpp make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' [ 0%] Built target lmfit_objlib cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/src/alltoall.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -MF 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/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -MF CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o.d -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/computeglobalselement.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 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/build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/src/p2p_send_recv.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/compression/bwt.c cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -MF CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o.d -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/programs/mdrun/nonbonded_bench.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/src/p2p_wait.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 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directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' [ 0%] Built target mdrun_objlib cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/src/reduce_fast.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/src/gather.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o -c 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-I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/programs/CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o -MF CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o.d -o CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/programs/view/xdlghi.cpp make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' [ 0%] Built target linearalgebra cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem 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CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/compression/xtc3.c cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o -MF 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/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/src/numa_malloc.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/src/once.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/lib/tng_io.c cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/lib/md5.c cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o -MF CMakeFiles/modularsimulator.dir/forceelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/forceelement.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/forceelement.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o -MF CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o.d -o CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/freeenergyperturbationdata.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -MF CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o.d -o CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/modularsimulator.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -MF CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o.d -o CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -MF CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o.d -o CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' [ 1%] Built target view_objlib cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o -MF CMakeFiles/modularsimulator.dir/propagator.cpp.o.d -o CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/propagator.cpp make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' [ 1%] Built target scanner cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o -MF CMakeFiles/modularsimulator.dir/signallers.cpp.o.d -o CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/signallers.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o -MF CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o.d -o CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/simulatoralgorithm.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -MF CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o.d -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/statepropagatordata.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -MF CMakeFiles/modularsimulator.dir/topologyholder.cpp.o.d -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/topologyholder.cpp make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' [ 4%] Built target thread_mpi cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -MF CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/trajectoryelement.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -MF CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o.d -o CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/velocityscalingtemperaturecoupling.cpp make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' [ 7%] Built target tng_io_obj make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' [ 9%] Built target modularsimulator /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/VersionInfo.cmake -D VERSION_CMAKEIN=/build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI= -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /build/gromacs-2CxdpC/gromacs-2021.4/cmake/gmxConfigureVersionInfo.cmake cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -MF CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/alignedallocator.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o -MF CMakeFiles/libgromacs.dir/utility/any.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/any.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/any.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -MF CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/basenetwork.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -MF CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/baseversion.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o -MF CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/binaryinformation.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o -MF CMakeFiles/libgromacs.dir/utility/compare.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/compare.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/compare.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -MF CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/coolstuff.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -MF CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/cstringutil.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -MF CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/datafilefinder.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -MF CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/directoryenumerator.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -MF CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/errorcodes.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -MF CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/errorformat.cpp In file included from /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/binaryinformation.cpp:77: /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/buildinfo.h:75: warning: "HWLOC_VERSION" redefined 75 | #define HWLOC_VERSION "2.5.0" | In file included from /usr/include/hwloc.h:56, from /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/binaryinformation.cpp:64: /usr/include/x86_64-linux-gnu/hwloc/autogen/config.h:15: note: this is the location of the previous definition 15 | #define HWLOC_VERSION "2.6.0" | cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -MF CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/exceptions.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -MF CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/fatalerror.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -MF CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/fileredirector.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -MF CMakeFiles/libgromacs.dir/utility/filestream.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/filestream.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT 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-DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -MF CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/gmxassert.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -MF CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/gmxomp.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -MF CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/ikeyvaluetreeerror.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o -MF CMakeFiles/libgromacs.dir/utility/init.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/init.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o -MF CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/inmemoryserializer.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -MF CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/int64_to_int.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -MF CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/keyvaluetree.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/tng/include -isystem 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-I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp 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-I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o.d -o 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-I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o.d -o 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/build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/arrayref.h:54, from /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/gmxpreprocess/h_db.h:45, from /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/gmxpreprocess/h_db.cpp:41: In static member function ‘static constexpr std::size_t std::char_traits::length(const char_type*)’, inlined from ‘std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::assign(const _CharT*) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/11/bits/basic_string.h:1458:19, inlined from ‘std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(const _CharT*) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/11/bits/basic_string.h:689:28, inlined from ‘void read_ab(char*, const char*, MoleculePatch*)’ at 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/build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/gmxpreprocess/pdb2gmx.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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/usr/lib/x86_64-linux-gnu/libblas.so -lpthread -lm /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/liblapack.so -lpthread -lm /usr/lib/gcc/x86_64-linux-gnu/11/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libgromacs_d.so.6.0.0 ../../lib/libgromacs_d.so.6 ../../lib/libgromacs_d.so make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' [ 95%] Built target libgromacs /usr/bin/make -f api/nblib/CMakeFiles/nblib.dir/build.make api/nblib/CMakeFiles/nblib.dir/depend /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib 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-f api/nblib/CMakeFiles/nblib.dir/build.make api/nblib/CMakeFiles/nblib.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmx.dir/link.txt --verbose=1 make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/api/nblib && /usr/bin/c++ -DGMX_DOUBLE=1 -Dnblib_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/api -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT api/nblib/CMakeFiles/nblib.dir/box.cpp.o -MF CMakeFiles/nblib.dir/box.cpp.o.d -o CMakeFiles/nblib.dir/box.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib/box.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/api/nblib && /usr/bin/c++ -DGMX_DOUBLE=1 -Dnblib_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/api -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT api/nblib/CMakeFiles/nblib.dir/forcecalculator.cpp.o -MF CMakeFiles/nblib.dir/forcecalculator.cpp.o.d -o CMakeFiles/nblib.dir/forcecalculator.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib/forcecalculator.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/api/nblib && /usr/bin/c++ -DGMX_DOUBLE=1 -Dnblib_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/api -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT api/nblib/CMakeFiles/nblib.dir/gmxcalculator.cpp.o -MF CMakeFiles/nblib.dir/gmxcalculator.cpp.o.d -o CMakeFiles/nblib.dir/gmxcalculator.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib/gmxcalculator.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/api/nblib && /usr/bin/c++ -DGMX_DOUBLE=1 -Dnblib_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/api -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT api/nblib/CMakeFiles/nblib.dir/gmxsetup.cpp.o -MF CMakeFiles/nblib.dir/gmxsetup.cpp.o.d -o CMakeFiles/nblib.dir/gmxsetup.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib/gmxsetup.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/api/nblib && /usr/bin/c++ -DGMX_DOUBLE=1 -Dnblib_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/api -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT api/nblib/CMakeFiles/nblib.dir/integrator.cpp.o -MF CMakeFiles/nblib.dir/integrator.cpp.o.d -o CMakeFiles/nblib.dir/integrator.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib/integrator.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/api/nblib && /usr/bin/c++ -DGMX_DOUBLE=1 -Dnblib_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/api -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT api/nblib/CMakeFiles/nblib.dir/interactions.cpp.o -MF CMakeFiles/nblib.dir/interactions.cpp.o.d -o CMakeFiles/nblib.dir/interactions.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib/interactions.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/api/nblib && /usr/bin/c++ -DGMX_DOUBLE=1 -Dnblib_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/api -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT api/nblib/CMakeFiles/nblib.dir/molecules.cpp.o -MF CMakeFiles/nblib.dir/molecules.cpp.o.d -o CMakeFiles/nblib.dir/molecules.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib/molecules.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/api/nblib && /usr/bin/c++ -DGMX_DOUBLE=1 -Dnblib_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/api -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT api/nblib/CMakeFiles/nblib.dir/particlesequencer.cpp.o -MF CMakeFiles/nblib.dir/particlesequencer.cpp.o.d -o CMakeFiles/nblib.dir/particlesequencer.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib/particlesequencer.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/api/nblib && /usr/bin/c++ -DGMX_DOUBLE=1 -Dnblib_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/api -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT api/nblib/CMakeFiles/nblib.dir/particletype.cpp.o -MF CMakeFiles/nblib.dir/particletype.cpp.o.d -o CMakeFiles/nblib.dir/particletype.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib/particletype.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmx_objlib.dir/gmx.cpp.o CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o CMakeFiles/view_objlib.dir/view/3dview.cpp.o CMakeFiles/view_objlib.dir/view/buttons.cpp.o CMakeFiles/view_objlib.dir/view/dialogs.cpp.o CMakeFiles/view_objlib.dir/view/fgrid.cpp.o CMakeFiles/view_objlib.dir/view/filter.cpp.o CMakeFiles/view_objlib.dir/view/logo.cpp.o CMakeFiles/view_objlib.dir/view/manager.cpp.o CMakeFiles/view_objlib.dir/view/molps.cpp.o CMakeFiles/view_objlib.dir/view/nleg.cpp.o CMakeFiles/view_objlib.dir/view/nmol.cpp.o CMakeFiles/view_objlib.dir/view/popup.cpp.o CMakeFiles/view_objlib.dir/view/pulldown.cpp.o CMakeFiles/view_objlib.dir/view/view.cpp.o CMakeFiles/view_objlib.dir/view/x11.cpp.o CMakeFiles/view_objlib.dir/view/xdlg.cpp.o CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o CMakeFiles/view_objlib.dir/view/xmb.cpp.o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -o ../../bin/gmx_d ../../lib/libgromacs_d.so.6.0.0 /usr/lib/x86_64-linux-gnu/libX11.so -lm /usr/lib/gcc/x86_64-linux-gnu/11/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' [ 95%] Built target gmx cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/api/nblib && /usr/bin/c++ -DGMX_DOUBLE=1 -Dnblib_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/api -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT api/nblib/CMakeFiles/nblib.dir/simulationstate.cpp.o -MF CMakeFiles/nblib.dir/simulationstate.cpp.o.d -o CMakeFiles/nblib.dir/simulationstate.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib/simulationstate.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/api/nblib && /usr/bin/c++ -DGMX_DOUBLE=1 -Dnblib_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/api -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT api/nblib/CMakeFiles/nblib.dir/topologyhelpers.cpp.o -MF CMakeFiles/nblib.dir/topologyhelpers.cpp.o.d -o CMakeFiles/nblib.dir/topologyhelpers.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib/topologyhelpers.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/api/nblib && /usr/bin/c++ -DGMX_DOUBLE=1 -Dnblib_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/api -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT api/nblib/CMakeFiles/nblib.dir/topology.cpp.o -MF CMakeFiles/nblib.dir/topology.cpp.o.d -o CMakeFiles/nblib.dir/topology.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib/topology.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/api/nblib && /usr/bin/c++ -DGMX_DOUBLE=1 -Dnblib_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/api -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT api/nblib/CMakeFiles/nblib.dir/listed_forces/calculator.cpp.o -MF CMakeFiles/nblib.dir/listed_forces/calculator.cpp.o.d -o CMakeFiles/nblib.dir/listed_forces/calculator.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib/listed_forces/calculator.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/api/nblib && /usr/bin/c++ -DGMX_DOUBLE=1 -Dnblib_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/api -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT api/nblib/CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o -MF CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o.d -o CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib/listed_forces/transformations.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/api/nblib && /usr/bin/c++ -DGMX_DOUBLE=1 -Dnblib_EXPORTS -I/build/gromacs-2CxdpC/gromacs-2021.4/api -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT api/nblib/CMakeFiles/nblib.dir/util/setup.cpp.o -MF CMakeFiles/nblib.dir/util/setup.cpp.o.d -o CMakeFiles/nblib.dir/util/setup.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib/util/setup.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/api/nblib && /usr/bin/cmake -E cmake_link_script CMakeFiles/nblib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libnblib.so.0 -o ../../lib/libnblib.so.0.1.0 CMakeFiles/nblib.dir/box.cpp.o CMakeFiles/nblib.dir/forcecalculator.cpp.o CMakeFiles/nblib.dir/gmxcalculator.cpp.o CMakeFiles/nblib.dir/gmxsetup.cpp.o CMakeFiles/nblib.dir/integrator.cpp.o CMakeFiles/nblib.dir/interactions.cpp.o CMakeFiles/nblib.dir/molecules.cpp.o CMakeFiles/nblib.dir/particlesequencer.cpp.o CMakeFiles/nblib.dir/particletype.cpp.o CMakeFiles/nblib.dir/simulationstate.cpp.o CMakeFiles/nblib.dir/topologyhelpers.cpp.o CMakeFiles/nblib.dir/topology.cpp.o CMakeFiles/nblib.dir/listed_forces/calculator.cpp.o CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o CMakeFiles/nblib.dir/util/setup.cpp.o ../../lib/libgromacs_d.so.6.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/11/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/api/nblib && /usr/bin/cmake -E cmake_symlink_library ../../lib/libnblib.so.0.1.0 ../../lib/libnblib.so.0 ../../lib/libnblib.so make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' [ 96%] Built target nblib /usr/bin/make -f api/nblib/samples/CMakeFiles/methane-water-integration.dir/build.make api/nblib/samples/CMakeFiles/methane-water-integration.dir/depend /usr/bin/make -f api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build.make api/nblib/samples/CMakeFiles/argon-forces-integration.dir/depend make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib/samples /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/api/nblib/samples /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/api/nblib/samples/CMakeFiles/methane-water-integration.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib/samples /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp 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-isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++17 -MD -MT api/nblib/samples/CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o -MF CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o.d -o CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib/samples/methane-water-integration.cpp make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/api/nblib/samples && /usr/bin/c++ -DGMX_DOUBLE=1 -I/build/gromacs-2CxdpC/gromacs-2021.4/api -I/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++17 -MD -MT api/nblib/samples/CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o -MF CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o.d -o CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib/samples/argon-forces-integration.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/api/nblib/samples && /usr/bin/cmake -E cmake_link_script CMakeFiles/methane-water-integration.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o -o ../../../bin/methane-water-integration ../../../lib/libnblib.so.0.1.0 -Wl,-rpath-link,/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/lib make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' [ 98%] Built target methane-water-integration cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/api/nblib/samples && /usr/bin/cmake -E cmake_link_script CMakeFiles/argon-forces-integration.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o -o ../../../bin/argon-forces-integration ../../../lib/libnblib.so.0.1.0 -Wl,-rpath-link,/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/lib make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' [100%] Built target argon-forces-integration make[2]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' /usr/bin/cmake -E cmake_progress_start /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/CMakeFiles 0 make[1]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' touch build-basic dh_testdir /usr/bin/make -j10 -C build/mpi make[1]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' /usr/bin/cmake -S/build/gromacs-2CxdpC/gromacs-2021.4 -B/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/CMakeFiles /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend /usr/bin/make -f 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/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/linearalgebra /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/linearalgebra /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/programs /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/programs /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi && /usr/bin/cmake -E cmake_depends 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src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/selection && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++17 -MD -MT src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o -MF CMakeFiles/scanner.dir/parser.cpp.o.d -o CMakeFiles/scanner.dir/parser.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/selection/parser.cpp make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' cd /build/gromacs-2CxdpC/gromacs-2021.4 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.9 -D PROJECT_VERSION=2021.4-Debian-2021.4-2 -D PROJECT_SOURCE_DIR=/build/gromacs-2CxdpC/gromacs-2021.4 -D VERSION_CMAKEIN=/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2021.4-2 -P /build/gromacs-2CxdpC/gromacs-2021.4/cmake/gmxGenerateVersionInfoWithoutGit.cmake cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/selection && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++17 -MD -MT src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o -MF CMakeFiles/scanner.dir/scanner.cpp.o.d -o CMakeFiles/scanner.dir/scanner.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/selection/scanner.cpp make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -std=c++17 -MD -MT src/gromacs/CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -MF CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o.d -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit/lmmin.cpp make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o.d -o 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src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/src/tmpi_malloc.cpp /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/linearalgebra && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++17 -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -MF CMakeFiles/linearalgebra.dir/eigensolver.cpp.o.d -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/linearalgebra/eigensolver.cpp make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicc -DGMX_DOUBLE=0 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/compression/bwlzh.c make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/programs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -MF CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o.d -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/programs/mdrun/mdrun.cpp make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/modularsimulator && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -MF CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o.d -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/checkpointhelper.cpp make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' [ 0%] Built target release-version-info cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/programs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -MF CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o.d -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/programs/mdrun/nonbonded_bench.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/linearalgebra && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++17 -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -MF CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o.d -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/linearalgebra/gmx_arpack.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/src/atomic.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/src/lock.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/src/pthreads.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/linearalgebra && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 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-Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/src/system_error.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicc -DGMX_DOUBLE=0 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/compression/bwt.c cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicc -DGMX_DOUBLE=0 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/compression/coder.c make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' [ 1%] Built target thread_mpi cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/linearalgebra && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++17 -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/nrjac.cpp.o -MF CMakeFiles/linearalgebra.dir/nrjac.cpp.o.d -o CMakeFiles/linearalgebra.dir/nrjac.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/linearalgebra/nrjac.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/linearalgebra && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast 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src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/compression/dict.c cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicc -DGMX_DOUBLE=0 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/compression/fixpoint.c make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicc -DGMX_DOUBLE=0 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/compression/huffman.c [ 1%] Built target lmfit_objlib cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicc -DGMX_DOUBLE=0 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers 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src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/compression/xtc3.c cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicc -DGMX_DOUBLE=0 -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/lib/tng_io.c make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' [ 1%] Built target mdrun_objlib cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicc -DGMX_DOUBLE=0 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/lib/md5.c cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/modularsimulator && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -MF CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o.d -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/computeglobalselement.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/modularsimulator && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -MF CMakeFiles/modularsimulator.dir/constraintelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/constraintelement.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/modularsimulator && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -MF CMakeFiles/modularsimulator.dir/domdechelper.cpp.o.d -o CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/domdechelper.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/modularsimulator && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o -MF CMakeFiles/modularsimulator.dir/energydata.cpp.o.d -o CMakeFiles/modularsimulator.dir/energydata.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/energydata.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/modularsimulator && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o -MF CMakeFiles/modularsimulator.dir/forceelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/forceelement.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/forceelement.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/modularsimulator && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o -MF CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o.d -o CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/freeenergyperturbationdata.cpp make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' [ 2%] Built target linearalgebra cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/modularsimulator && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -MF CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o.d -o CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/modularsimulator.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/modularsimulator && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -MF CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o.d -o CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' [ 2%] Built target scanner cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/modularsimulator && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -MF CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o.d -o CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/modularsimulator && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o -MF CMakeFiles/modularsimulator.dir/propagator.cpp.o.d -o CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/propagator.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/modularsimulator && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o -MF CMakeFiles/modularsimulator.dir/signallers.cpp.o.d -o CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/signallers.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/modularsimulator && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o -MF CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o.d -o CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/simulatoralgorithm.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/modularsimulator && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -MF CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o.d -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/statepropagatordata.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/modularsimulator && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -MF CMakeFiles/modularsimulator.dir/topologyholder.cpp.o.d -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/topologyholder.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/modularsimulator && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -MF CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/trajectoryelement.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/modularsimulator && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -MF CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o.d -o CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/velocityscalingtemperaturecoupling.cpp make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' [ 5%] Built target tng_io_obj make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' [ 8%] Built target modularsimulator /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/VersionInfo.cmake -D VERSION_CMAKEIN=/build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI= -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /build/gromacs-2CxdpC/gromacs-2021.4/cmake/gmxConfigureVersionInfo.cmake cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -MF CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/alignedallocator.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o -MF CMakeFiles/libgromacs.dir/utility/any.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/any.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/any.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -MF CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/basenetwork.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -MF CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/baseversion.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o -MF CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/binaryinformation.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o -MF CMakeFiles/libgromacs.dir/utility/compare.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/compare.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/compare.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -MF CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/coolstuff.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -MF CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/cstringutil.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -MF CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/datafilefinder.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -MF CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/directoryenumerator.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -MF CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/errorcodes.cpp In file included from /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/binaryinformation.cpp:77: /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/buildinfo.h:75: warning: "HWLOC_VERSION" redefined 75 | #define HWLOC_VERSION "2.5.0" | In file included from /usr/include/hwloc.h:56, from /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/binaryinformation.cpp:64: /usr/include/x86_64-linux-gnu/hwloc/autogen/config.h:15: note: this is the location of the previous definition 15 | #define HWLOC_VERSION "2.6.0" | cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -MF CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/errorformat.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem 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-I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -MF CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/fileredirector.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && 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-DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o.d -o 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/build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT 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/usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o.d -o 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/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem 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/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -MF 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/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers 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-isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include 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/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers 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-DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o.d -o 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/build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT 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/build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT 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&& /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o 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/build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 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-DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o.d -o 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-I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 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/build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 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&& /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o.d -o 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/usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o.d -o 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/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -MF 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/usr/bin/mpicxx -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o.d -o 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CMakeFiles/scanner.dir/scanner.cpp.o.d -o CMakeFiles/scanner.dir/scanner.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/selection/scanner.cpp make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers 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-MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -MF CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o.d -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/linearalgebra/gmx_arpack.cpp make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.9 -D PROJECT_VERSION=2021.4-Debian-2021.4-2 -D PROJECT_SOURCE_DIR=/build/gromacs-2CxdpC/gromacs-2021.4 -D VERSION_CMAKEIN=/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2021.4-2 -P /build/gromacs-2CxdpC/gromacs-2021.4/cmake/gmxGenerateVersionInfoWithoutGit.cmake make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/src/errhandler.cpp make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/programs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -MF CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o.d -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/programs/mdrun/mdrun.cpp make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -MF CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o.d -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/checkpointhelper.cpp make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicc -DGMX_DOUBLE=1 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/compression/bwlzh.c make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -std=c++17 -MD -MT src/gromacs/CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -MF CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o.d -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit/lmmin.cpp make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' [ 0%] Built target release-version-info cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD 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src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/src/atomic.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/src/lock.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++17 -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o -MF CMakeFiles/linearalgebra.dir/matrix.cpp.o.d -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/linearalgebra/matrix.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/src/pthreads.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++17 -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/nrjac.cpp.o -MF CMakeFiles/linearalgebra.dir/nrjac.cpp.o.d -o CMakeFiles/linearalgebra.dir/nrjac.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/linearalgebra/nrjac.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++17 -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -MF CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o.d -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/linearalgebra/sparsematrix.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/src/system_error.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicc -DGMX_DOUBLE=1 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/compression/bwt.c cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicc -DGMX_DOUBLE=1 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/compression/coder.c cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicc -DGMX_DOUBLE=1 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/compression/dict.c make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' [ 1%] Built target thread_mpi cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicc -DGMX_DOUBLE=1 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/compression/fixpoint.c cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicc -DGMX_DOUBLE=1 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/compression/huffman.c cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicc -DGMX_DOUBLE=1 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/compression/huffmem.c make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' [ 1%] Built target lmfit_objlib cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicc -DGMX_DOUBLE=1 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/compression/lz77.c cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicc -DGMX_DOUBLE=1 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/compression/merge_sort.c cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicc -DGMX_DOUBLE=1 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/compression/mtf.c cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/programs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -std=c++17 -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -MF CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o.d -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/programs/mdrun/nonbonded_bench.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicc -DGMX_DOUBLE=1 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/compression/rle.c cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicc -DGMX_DOUBLE=1 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/compression/tng_compress.c cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicc -DGMX_DOUBLE=1 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/compression/vals16.c cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicc -DGMX_DOUBLE=1 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/compression/warnmalloc.c cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicc -DGMX_DOUBLE=1 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/compression/widemuldiv.c cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicc -DGMX_DOUBLE=1 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/compression/xtc2.c cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicc -DGMX_DOUBLE=1 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/compression/xtc3.c cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -MF CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/compositesimulatorelement.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -MF CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o.d -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/computeglobalselement.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicc -DGMX_DOUBLE=1 -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/lib/tng_io.c cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicc -DGMX_DOUBLE=1 -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/src/lib/md5.c cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -MF CMakeFiles/modularsimulator.dir/constraintelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/constraintelement.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -MF CMakeFiles/modularsimulator.dir/domdechelper.cpp.o.d -o CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/domdechelper.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o -MF CMakeFiles/modularsimulator.dir/energydata.cpp.o.d -o CMakeFiles/modularsimulator.dir/energydata.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/energydata.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o -MF CMakeFiles/modularsimulator.dir/forceelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/forceelement.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/forceelement.cpp make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' [ 2%] Built target linearalgebra cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o -MF CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o.d -o CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/freeenergyperturbationdata.cpp make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' [ 2%] Built target mdrun_objlib cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -MF CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o.d -o CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/modularsimulator.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -MF CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o.d -o CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -MF CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o.d -o CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o -MF CMakeFiles/modularsimulator.dir/propagator.cpp.o.d -o CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/propagator.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o -MF CMakeFiles/modularsimulator.dir/signallers.cpp.o.d -o CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/signallers.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o -MF CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o.d -o CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/simulatoralgorithm.cpp make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' [ 2%] Built target scanner cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -MF CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o.d -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/statepropagatordata.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -MF CMakeFiles/modularsimulator.dir/topologyholder.cpp.o.d -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/topologyholder.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -MF CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/trajectoryelement.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++17 -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -MF CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o.d -o CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator/velocityscalingtemperaturecoupling.cpp make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' [ 5%] Built target tng_io_obj make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' [ 8%] Built target modularsimulator /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/VersionInfo.cmake -D VERSION_CMAKEIN=/build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI= -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /build/gromacs-2CxdpC/gromacs-2021.4/cmake/gmxConfigureVersionInfo.cmake cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -MF CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/alignedallocator.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem 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/build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/binaryinformation.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o 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-Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -MF CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/cstringutil.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -MF CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/datafilefinder.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -MF CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/directoryenumerator.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -MF CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/errorcodes.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -MF CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/errorformat.cpp In file included from /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/binaryinformation.cpp:77: /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/buildinfo.h:75: warning: "HWLOC_VERSION" redefined 75 | #define HWLOC_VERSION "2.5.0" | In file included from /usr/include/hwloc.h:56, from /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/binaryinformation.cpp:64: /usr/include/x86_64-linux-gnu/hwloc/autogen/config.h:15: note: this is the location of the previous definition 15 | #define HWLOC_VERSION "2.6.0" | cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -MF CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/exceptions.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -MF CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/fatalerror.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -MF CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/utility/fileredirector.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -MF CMakeFiles/libgromacs.dir/utility/filestream.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c 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/build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT 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/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -MF 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/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c 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-DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o.d -o 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/build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT 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/build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem 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/build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem 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/build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem 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/build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 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&& /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o.d -o 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-I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 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-I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem 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-I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT 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-I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c 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/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -MF 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/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs && /usr/bin/mpicxx -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -MF 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-I/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src -I/build/gromacs-2CxdpC/gromacs-2021.4/src -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/thread_mpi/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/tng_io/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/tng/include -isystem /build/gromacs-2CxdpC/gromacs-2021.4/src/external/lmfit -g -O2 -ffile-prefix-map=/build/gromacs-2CxdpC/gromacs-2021.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o 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src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/selection /build/gromacs-2CxdpC/gromacs-2021.4/build/basic /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs/selection /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/build/basic /build/gromacs-2CxdpC/gromacs-2021.4/build/basic /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/programs/CMakeFiles/gmx_objlib.dir/build.make src/programs/CMakeFiles/gmx_objlib.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic && /usr/bin/cmake -E cmake_depends "Unix 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/usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator /build/gromacs-2CxdpC/gromacs-2021.4/build/basic /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs/modularsimulator /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/programs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/programs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/programs/CMakeFiles/gmx_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/programs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/programs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/programs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/programs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build Consolidate compiler generated dependencies of target lmfit_objlib make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' cd /build/gromacs-2CxdpC/gromacs-2021.4 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.9 -D PROJECT_VERSION=2021.4-Debian-2021.4-2 -D PROJECT_SOURCE_DIR=/build/gromacs-2CxdpC/gromacs-2021.4 -D VERSION_CMAKEIN=/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/gromacs-2CxdpC/gromacs-2021.4/build/basic/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2021.4-2 -P /build/gromacs-2CxdpC/gromacs-2021.4/cmake/gmxGenerateVersionInfoWithoutGit.cmake Consolidate compiler generated dependencies of target scanner make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build Consolidate compiler generated dependencies of target mdrun_objlib make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' Consolidate compiler generated dependencies of target gmx_objlib make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' Consolidate compiler generated dependencies of target tng_io_obj /usr/bin/make -f src/programs/CMakeFiles/gmx_objlib.dir/build.make src/programs/CMakeFiles/gmx_objlib.dir/build Consolidate compiler generated dependencies of target linearalgebra make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' make[3]: Nothing to be done for 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/build/gromacs-2CxdpC/gromacs-2021.4/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Consolidate compiler generated dependencies of target libgromacs make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' [ 95%] Built target libgromacs /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend /usr/bin/make -f api/nblib/CMakeFiles/nblib.dir/build.make api/nblib/CMakeFiles/nblib.dir/depend /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/share/template /build/gromacs-2CxdpC/gromacs-2021.4/build/basic /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/share/template /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/share/template/CMakeFiles/template.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 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'/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' make[3]: Nothing to be done for 'api/nblib/CMakeFiles/nblib.dir/build'. make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' [ 96%] Built target nblib /usr/bin/make -f api/nblib/samples/CMakeFiles/methane-water-integration.dir/build.make api/nblib/samples/CMakeFiles/methane-water-integration.dir/depend /usr/bin/make -f api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build.make api/nblib/samples/CMakeFiles/argon-forces-integration.dir/depend make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib/samples /build/gromacs-2CxdpC/gromacs-2021.4/build/basic /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/api/nblib/samples 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'/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' make[3]: Nothing to be done for 'api/nblib/samples/CMakeFiles/methane-water-integration.dir/build'. make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' Consolidate compiler generated dependencies of target argon-forces-integration make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' /usr/bin/make -f api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build.make api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' make[3]: Nothing to be done for 'api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build'. make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' [ 98%] Built target methane-water-integration [100%] Built target argon-forces-integration make[2]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' /usr/bin/cmake -E cmake_progress_start /build/gromacs-2CxdpC/gromacs-2021.4/build/basic/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/man/man1 -- Installing: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/man/man1/gmx-sorient.1 -- Installing: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/man/man1/gmx-tcaf.1 -- Installing: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/man/man1/gmx-vanhove.1 -- Installing: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/man/man1/gmx-mk_angndx.1 -- Installing: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/man/man1/gmx-wheel.1 -- 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Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' /usr/bin/cmake -S/build/gromacs-2CxdpC/gromacs-2021.4 -B/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/CMakeFiles /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend 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/build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/programs/CMakeFiles/gmx_objlib.dir/build.make src/programs/CMakeFiles/gmx_objlib.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/linearalgebra /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs/linearalgebra /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs/modularsimulator /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/programs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/programs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/programs/CMakeFiles/gmx_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/programs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/programs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/programs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/programs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.9 -D PROJECT_VERSION=2021.4-Debian-2021.4-2 -D PROJECT_SOURCE_DIR=/build/gromacs-2CxdpC/gromacs-2021.4 -D VERSION_CMAKEIN=/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2021.4-2 -P /build/gromacs-2CxdpC/gromacs-2021.4/cmake/gmxGenerateVersionInfoWithoutGit.cmake Consolidate compiler generated dependencies of target lmfit_objlib make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' Consolidate compiler generated dependencies of target scanner Consolidate compiler generated dependencies of target mdrun_objlib make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build Consolidate compiler generated dependencies of target tng_io_obj Consolidate compiler generated dependencies of target gmx_objlib make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' /usr/bin/make -f src/programs/CMakeFiles/gmx_objlib.dir/build.make src/programs/CMakeFiles/gmx_objlib.dir/build Consolidate compiler generated dependencies of target linearalgebra make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' make[3]: Entering directory 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[ 0%] Built target lmfit_objlib make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' [ 0%] Built target scanner [ 0%] Built target gmx_objlib [ 3%] Built target tng_io_obj [ 3%] Built target mdrun_objlib Consolidate compiler generated dependencies of target view_objlib Consolidate compiler generated dependencies of target thread_mpi [ 3%] Built target linearalgebra make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' make[3]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' [ 6%] Built target thread_mpi [ 7%] Built target view_objlib Consolidate compiler generated dependencies of target modularsimulator make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' [ 9%] Built target modularsimulator /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Consolidate compiler generated dependencies of target libgromacs make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' make[3]: Nothing to be done for 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/usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/api/nblib /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/api/nblib/CMakeFiles/nblib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' make[3]: Nothing to be done for 'src/programs/CMakeFiles/gmx.dir/build'. make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' [ 95%] Built target gmx Consolidate compiler generated dependencies of target nblib make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' /usr/bin/make -f api/nblib/CMakeFiles/nblib.dir/build.make api/nblib/CMakeFiles/nblib.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' make[3]: Nothing to be done for 'api/nblib/CMakeFiles/nblib.dir/build'. make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' [ 96%] Built target nblib /usr/bin/make -f api/nblib/samples/CMakeFiles/methane-water-integration.dir/build.make api/nblib/samples/CMakeFiles/methane-water-integration.dir/depend /usr/bin/make -f api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build.make api/nblib/samples/CMakeFiles/argon-forces-integration.dir/depend make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib/samples /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/api/nblib/samples /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/api/nblib/samples/CMakeFiles/methane-water-integration.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/api/nblib/samples /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/api/nblib/samples /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/api/nblib/samples/CMakeFiles/argon-forces-integration.dir/DependInfo.cmake --color= Consolidate compiler generated dependencies of target argon-forces-integration make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' /usr/bin/make -f api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build.make api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' make[3]: Nothing to be done for 'api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build'. make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' Consolidate compiler generated dependencies of target methane-water-integration make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' /usr/bin/make -f api/nblib/samples/CMakeFiles/methane-water-integration.dir/build.make api/nblib/samples/CMakeFiles/methane-water-integration.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' make[3]: Nothing to be done for 'api/nblib/samples/CMakeFiles/methane-water-integration.dir/build'. make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' [ 98%] Built target argon-forces-integration [100%] Built target methane-water-integration make[2]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' /usr/bin/cmake -E cmake_progress_start /build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/man/man1 -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/man/man1/gmx-sorient.1 -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/man/man1/gmx-tcaf.1 -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/man/man1/gmx-vanhove.1 -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/man/man1/gmx-mk_angndx.1 -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/man/man1/gmx-wheel.1 -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/man/man1/gmx-pdb2gmx.1 -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/man/man1/gmx-msd.1 -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/man/man1/gmx-hbond.1 -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/man/man1/gmx-view.1 -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/man/man1/gmx-nmtraj.1 -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/man/man1/gmx-editconf.1 -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/man/man1/gmx-dos.1 -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/man/man1/gmx-chi.1 -- Up-to-date: 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Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/amber94.ff/aminoacids.rtp -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/amber94.ff/tip4p.itp -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/amber94.ff/aminoacids.vsd -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/amber94.ff/tip3p.itp -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/amber94.ff/rna.rtp -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/amber94.ff/aminoacids.arn -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/oplsaa.ff -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/spc.itp -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/aminoacids.n.tdb -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/tip4pew.itp -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/ffnonbonded.itp -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/forcefield.itp -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/tip5pe.itp -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/methanol.itp -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/ions.itp -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/atomname2type.n2t -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/spce.itp -- Up-to-date: 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Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/charmm27.ff/ffnanonbonded.itp -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/charmm27.ff/atomtypes.atp -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/charmm27.ff/watermodels.dat -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/charmm27.ff/forcefield.doc -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.r2b -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/charmm27.ff/rna.r2b -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/charmm27.ff/rna.arn -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.c.tdb -- Up-to-date: 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Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/charmm27.ff/cmap.itp -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.arn -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/table6-8.xvg -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/residues.xml -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/table6-10.xvg -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/ffoplsaa-n.tst -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/ffG53a6.itp -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/ffoplsaa.itp -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff -- Up-to-date: 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Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/amber96.ff/watermodels.dat -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/amber96.ff/forcefield.doc -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.r2b -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/amber96.ff/rna.r2b -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/amber96.ff/rna.arn -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/amber96.ff/dna.r2b -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.c.tdb -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top/amber96.ff/ffbonded.itp -- Up-to-date: 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/build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/include/gromacs/math/units.h -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/include/gromacs/math/utilities.h -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/include/gromacs/math/vec.h -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/include/gromacs/math/vectypes.h -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/include/gromacs/mdrun/simulationinputhandle.h -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/include/gromacs/restraint/restraintpotential.h -- Installing: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/bin/gmx_d -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/bin -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/bin/gmx-completion.bash -- Installing: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/bin/gmx-completion-gmx_d.bash make[1]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/basic-dp' dh_installman -pgromacs debian/man/demux.1 debian/man/xplor2gmx.1 # gmx(1) -> gmx_d(1) dh_link -pgromacs -pgromacs-data dh_testdir dh_testroot dh_prep -pgromacs-mpi dh_installdirs -pgromacs-mpi /usr/bin/make -j10 -C build/mpi install DESTDIR=/build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-mpi make[1]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' /usr/bin/cmake -S/build/gromacs-2CxdpC/gromacs-2021.4 -B/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/CMakeFiles /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/selection /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/selection /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/linearalgebra /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/linearalgebra /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/programs /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/programs /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/modularsimulator /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' cd /build/gromacs-2CxdpC/gromacs-2021.4 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.9 -D PROJECT_VERSION=2021.4-Debian-2021.4-2 -D PROJECT_SOURCE_DIR=/build/gromacs-2CxdpC/gromacs-2021.4 -D VERSION_CMAKEIN=/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2021.4-2 -P /build/gromacs-2CxdpC/gromacs-2021.4/cmake/gmxGenerateVersionInfoWithoutGit.cmake Consolidate compiler generated dependencies of target mdrun_objlib make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build Consolidate compiler generated dependencies of target tng_io_obj make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' Consolidate compiler generated dependencies of target linearalgebra make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' [ 0%] Built target mdrun_objlib [ 2%] Built target tng_io_obj [ 4%] Built target linearalgebra Consolidate compiler generated dependencies of target lmfit_objlib make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build Consolidate compiler generated dependencies of target scanner Consolidate compiler generated dependencies of target thread_mpi make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' [ 4%] Built target release-version-info [ 4%] Built target lmfit_objlib [ 4%] Built target scanner [ 5%] Built target thread_mpi Consolidate compiler generated dependencies of target modularsimulator make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' [ 8%] Built target modularsimulator /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Consolidate compiler generated dependencies of target libgromacs make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' [ 98%] Built target libgromacs /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/programs /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/programs /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= Consolidate compiler generated dependencies of target mdrun make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun.dir/build'. make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' [100%] Built target mdrun make[2]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' /usr/bin/cmake -E cmake_progress_start /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-mpi/usr/include/gromacs/utility/basedefinitions.h -- Installing: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-mpi/usr/include/gromacs/utility/current_function.h -- Installing: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-mpi/usr/include/gromacs/utility/gmxassert.h -- Installing: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-mpi/usr/include/gromacs/utility/real.h -- Installing: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-mpi/usr/include/gromacs/math/do_fit.h -- Installing: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-mpi/usr/include/gromacs/math/functions.h -- Installing: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-mpi/usr/include/gromacs/math/units.h -- Installing: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-mpi/usr/include/gromacs/math/utilities.h -- Installing: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-mpi/usr/include/gromacs/math/vec.h -- Installing: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-mpi/usr/include/gromacs/math/vectypes.h -- Installing: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-mpi/usr/include/gromacs/mdrun/simulationinputhandle.h -- Installing: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-mpi/usr/include/gromacs/restraint/restraintpotential.h -- Installing: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-mpi/usr/bin/mdrun_mpi -- Installing: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-mpi/usr/bin/gmx-completion-mdrun_mpi.bash make[1]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi' /usr/bin/make -j10 -C build/mpi-dp install DESTDIR=/build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-mpi make[1]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' /usr/bin/cmake -S/build/gromacs-2CxdpC/gromacs-2021.4 -B/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/CMakeFiles /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/selection /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs/selection /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/linearalgebra /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs/linearalgebra /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/programs /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/programs /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs/modularsimulator /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs/modularsimulator /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.9 -D PROJECT_VERSION=2021.4-Debian-2021.4-2 -D PROJECT_SOURCE_DIR=/build/gromacs-2CxdpC/gromacs-2021.4 -D VERSION_CMAKEIN=/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2021.4-2 -P /build/gromacs-2CxdpC/gromacs-2021.4/cmake/gmxGenerateVersionInfoWithoutGit.cmake Consolidate compiler generated dependencies of target scanner make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build Consolidate compiler generated dependencies of target lmfit_objlib make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build Consolidate compiler generated dependencies of target linearalgebra make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' Consolidate compiler generated dependencies of target thread_mpi make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build Consolidate compiler generated dependencies of target mdrun_objlib make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' Consolidate compiler generated dependencies of target tng_io_obj /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' [ 0%] Built target lmfit_objlib [ 0%] Built target scanner [ 1%] Built target linearalgebra [ 2%] Built target thread_mpi [ 2%] Built target mdrun_objlib [ 5%] Built target tng_io_obj [ 5%] Built target release-version-info Consolidate compiler generated dependencies of target modularsimulator make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' [ 8%] Built target modularsimulator /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Consolidate compiler generated dependencies of target libgromacs make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' [ 98%] Built target libgromacs /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' cd /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gromacs-2CxdpC/gromacs-2021.4 /build/gromacs-2CxdpC/gromacs-2021.4/src/programs /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/programs /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= Consolidate compiler generated dependencies of target mdrun make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[3]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun.dir/build'. make[3]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' [100%] Built target mdrun make[2]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' /usr/bin/cmake -E cmake_progress_start /build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-mpi/usr/include/gromacs/utility/basedefinitions.h -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-mpi/usr/include/gromacs/utility/current_function.h -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-mpi/usr/include/gromacs/utility/gmxassert.h -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-mpi/usr/include/gromacs/utility/real.h -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-mpi/usr/include/gromacs/math/do_fit.h -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-mpi/usr/include/gromacs/math/functions.h -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-mpi/usr/include/gromacs/math/units.h -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-mpi/usr/include/gromacs/math/utilities.h -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-mpi/usr/include/gromacs/math/vec.h -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-mpi/usr/include/gromacs/math/vectypes.h -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-mpi/usr/include/gromacs/mdrun/simulationinputhandle.h -- Up-to-date: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-mpi/usr/include/gromacs/restraint/restraintpotential.h -- Installing: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-mpi/usr/bin/mdrun_mpi_d -- Installing: /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-mpi/usr/bin/gmx-completion-mdrun_mpi_d.bash make[1]: Leaving directory '/build/gromacs-2CxdpC/gromacs-2021.4/build/mpi-dp' # overlapping include files with libgromacs-dev: can probably remove when old API is removed rm -rf /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-mpi/usr/include chmod 644 /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-mpi/usr/bin/gmx-completion* mv /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-mpi/usr/bin/gmx-completion-mdrun_mpi.bash /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-mpi/usr/share/bash-completion/completions/mdrun_mpi mv /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-mpi/usr/bin/gmx-completion-mdrun_mpi_d.bash /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-mpi/usr/share/bash-completion/completions/mdrun_mpi_d dh_installman -pgromacs-mpi debian/man/mdrun_mpi.1 dh_link -pgromacs-mpi usr/share/man/man1/mdrun_mpi.1.gz usr/share/man/man1/mdrun_mpi_d.1.gz dh_lintian -pgromacs-mpi dh_testdir dh_testroot dh_prep -pgromacs-data -plibgromacs-dev -plibnblib-dev dh_installdirs -pgromacs-data mv /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/top \ /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-data/usr/share/gromacs mv /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/man \ /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-data/usr/share/man # concatenate bash completions; not just "cat * >" because they don't end in newlines perl -lne 'print' /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/bin/gmx*.bash > \ /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-data/usr/share/bash-completion/completions/gmx rm -f /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/bin/GMXRC* /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/bin/gmx*.bash # symlinks, primarily for /usr/share/doc/{gromacs,libgromacs*} -> gromacs-data dh_link -pgromacs-data # rename a pair of Perl scripts to drop the .pl extension (Policy 10.4) mv /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/bin/demux.pl /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/bin/demux mv /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/bin/xplor2gmx.pl /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/bin/xplor2gmx mkdir -p /build/gromacs-2CxdpC/gromacs-2021.4/debian/libgromacs6/usr/lib/x86_64-linux-gnu mkdir -p /build/gromacs-2CxdpC/gromacs-2021.4/debian/libnblib0/usr/lib/x86_64-linux-gnu mv /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/lib/*/libnb*.so.* /build/gromacs-2CxdpC/gromacs-2021.4/debian/libnblib0/usr/lib/x86_64-linux-gnu/ mv /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/lib/*/*.so.* /build/gromacs-2CxdpC/gromacs-2021.4/debian/libgromacs6/usr/lib/x86_64-linux-gnu/ # Move all -dev material to libgromacs-dev at first, then pick out subpackages one by one. dh_installdirs -plibgromacs-dev mv /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/include /build/gromacs-2CxdpC/gromacs-2021.4/debian/libgromacs-dev/usr/include # catch normal libraries plus all applicable MPI variants mkdir -p /build/gromacs-2CxdpC/gromacs-2021.4/debian/libgromacs-dev/usr/lib/x86_64-linux-gnu mv /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/lib/x86_64-linux-gnu/*.so \ /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/lib/x86_64-linux-gnu/pkgconfig \ /build/gromacs-2CxdpC/gromacs-2021.4/debian/libgromacs-dev/usr/lib/x86_64-linux-gnu/ rmdir /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/lib/x86_64-linux-gnu /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/lib # Extract libnblib. No pkgconfig or cmake helper files yet. dh_installdirs -plibnblib-dev mkdir -p /build/gromacs-2CxdpC/gromacs-2021.4/debian/libnblib-dev/usr/lib/x86_64-linux-gnu mv /build/gromacs-2CxdpC/gromacs-2021.4/debian/libgromacs-dev/usr/lib/x86_64-linux-gnu/libnblib.so \ /build/gromacs-2CxdpC/gromacs-2021.4/debian/libnblib-dev/usr/lib/x86_64-linux-gnu mv /build/gromacs-2CxdpC/gromacs-2021.4/debian/libgromacs-dev/usr/include/nblib \ /build/gromacs-2CxdpC/gromacs-2021.4/debian/libnblib-dev/usr/include/nblib # Extract libgmxapi here in the future: work in progress # Back to core gromacs components. mv /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/template /build/gromacs-2CxdpC/gromacs-2021.4/debian/libgromacs-dev/usr/share/gromacs/template # remaining documentation catch-all mv /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs/* /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs-data/usr/share/doc/gromacs rmdir /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/gromacs # what are you doing here? mv /build/gromacs-2CxdpC/gromacs-2021.4/debian/gromacs/usr/share/cmake /build/gromacs-2CxdpC/gromacs-2021.4/debian/libgromacs-dev/usr/share/gromacs/ dh_lintian -pgromacs -pgromacs-data -plibgromacs6 -plibnblib0 dh_testdir -a dh_testroot -a dh_installchangelogs -a dh_installdocs -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_dwz -a dwz: Too few files for multifile optimization dh_dwz: warning: No dwz multifile created, but not explicitly requested either so ignoring it. dh_dwz: warning: Common issues include no debug information at all (missing -g) and dh_dwz: warning: compressed debug information (#931891). dh_strip -A dh_makeshlibs -a dh_shlibdeps -plibgromacs6 -L libgromacs6 -l debian/libgromacs6/usr/lib dh_shlibdeps -plibnblib0 -L libnblib0 -l debian/libnblib0/usr/lib:debian/libgromacs6/usr/lib dh_shlibdeps -pgromacs -L libgromacs6 -l debian/libgromacs6/usr/lib:debian/gromacs/usr/lib dh_shlibdeps -pgromacs-mpi -L gromacs-mpi -l debian/gromacs-mpi/usr/lib dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package libnblib-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package libgromacs-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_installdeb -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'libgromacs6-dbgsym' in '../libgromacs6-dbgsym_2021.4-2_amd64.deb'. dpkg-deb: building package 'gromacs' in '../gromacs_2021.4-2_amd64.deb'. dpkg-deb: building package 'libgromacs6' in '../libgromacs6_2021.4-2_amd64.deb'. dpkg-deb: building package 'libnblib0' in '../libnblib0_2021.4-2_amd64.deb'. dpkg-deb: building package 'libgromacs-dev' in '../libgromacs-dev_2021.4-2_amd64.deb'. dpkg-deb: building package 'gromacs-mpi' in '../gromacs-mpi_2021.4-2_amd64.deb'. dpkg-deb: building package 'gromacs-dbgsym' in '../gromacs-dbgsym_2021.4-2_amd64.deb'. dpkg-deb: building package 'libnblib0-dbgsym' in '../libnblib0-dbgsym_2021.4-2_amd64.deb'. dpkg-deb: building package 'libnblib-dev' in '../libnblib-dev_2021.4-2_amd64.deb'. dpkg-deb: building package 'gromacs-mpi-dbgsym' in '../gromacs-mpi-dbgsym_2021.4-2_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../gromacs_2021.4-2_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/gromacs-2CxdpC /tmp/gromacs-2021.4-2zh2n0h_i I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.RN1o7_CzAH... I: success in 10914.5034 seconds md5: gromacs-dbgsym_2021.4-2_amd64.deb: OK md5: gromacs-mpi-dbgsym_2021.4-2_amd64.deb: OK md5: gromacs-mpi_2021.4-2_amd64.deb: OK md5: gromacs_2021.4-2_amd64.deb: OK md5: Value of 'md5' differs for libgromacs-dev_2021.4-2_amd64.deb md5: Size differs for libgromacs-dev_2021.4-2_amd64.deb md5: libgromacs6-dbgsym_2021.4-2_amd64.deb: OK md5: libgromacs6_2021.4-2_amd64.deb: OK md5: libnblib-dev_2021.4-2_amd64.deb: OK md5: libnblib0-dbgsym_2021.4-2_amd64.deb: OK md5: libnblib0_2021.4-2_amd64.deb: OK sha1: gromacs-dbgsym_2021.4-2_amd64.deb: OK sha1: gromacs-mpi-dbgsym_2021.4-2_amd64.deb: OK sha1: gromacs-mpi_2021.4-2_amd64.deb: OK sha1: gromacs_2021.4-2_amd64.deb: OK sha1: Value of 'sha1' differs for libgromacs-dev_2021.4-2_amd64.deb sha1: Size differs for libgromacs-dev_2021.4-2_amd64.deb sha1: libgromacs6-dbgsym_2021.4-2_amd64.deb: OK sha1: libgromacs6_2021.4-2_amd64.deb: OK sha1: libnblib-dev_2021.4-2_amd64.deb: OK sha1: libnblib0-dbgsym_2021.4-2_amd64.deb: OK sha1: libnblib0_2021.4-2_amd64.deb: OK sha256: gromacs-dbgsym_2021.4-2_amd64.deb: OK sha256: gromacs-mpi-dbgsym_2021.4-2_amd64.deb: OK sha256: gromacs-mpi_2021.4-2_amd64.deb: OK sha256: gromacs_2021.4-2_amd64.deb: OK sha256: Value of 'sha256' differs for libgromacs-dev_2021.4-2_amd64.deb sha256: Size differs for libgromacs-dev_2021.4-2_amd64.deb sha256: libgromacs6-dbgsym_2021.4-2_amd64.deb: OK sha256: libgromacs6_2021.4-2_amd64.deb: OK sha256: libnblib-dev_2021.4-2_amd64.deb: OK sha256: libnblib0-dbgsym_2021.4-2_amd64.deb: OK sha256: libnblib0_2021.4-2_amd64.deb: OK Checksums: FAIL Cannot generate diffoscope for libgromacs-dev_2021.4-2_amd64.deb: RetryError[]