Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/g/gemmi/gemmi_0.5.4+ds-1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/gemmi-0.5.4+ds-11pobndy9/gemmi_0.5.4+ds-1_amd64.buildinfo Get source package info: gemmi=0.5.4+ds-1 Source URL: http://snapshot.notset.fr/mr/package/gemmi/0.5.4+ds-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.5-1.3 autopoint=0.21-6 autotools-dev=20220109.1 base-files=12.2 base-passwd=3.5.52 bash=5.1-6+b1 binutils=2.38-4 binutils-common=2.38-4 binutils-x86-64-linux-gnu=2.38-4 bsdextrautils=2.38-4 bsdutils=1:2.38-4 build-essential=12.9 bzip2=1.0.8-5 cmake=3.23.1-2 cmake-data=3.23.1-2 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.3.0-1 dash=0.5.11+git20210903+057cd650a4ed-8 debconf=1.5.79 debhelper=13.7.1 debianutils=5.7-0.2 dh-autoreconf=20 dh-elpa-helper=2.0.10 dh-python=5.20220403 dh-strip-nondeterminism=1.13.0-1 diffutils=1:3.7-5 doctest-dev=2.4.8~ds-1.1 dpkg=1.21.7 dpkg-dev=1.21.7 dwz=0.14-1 emacsen-common=3.0.4 file=1:5.41-4 findutils=4.9.0-3 g++=4:11.2.0-2 g++-11=11.3.0-1 gcc=4:11.2.0-2 gcc-11=11.3.0-1 gcc-11-base=11.3.0-1 gcc-12-base=12.1.0-2 gettext=0.21-6 gettext-base=0.21-6 grep=3.7-1 groff-base=1.22.4-8 gzip=1.12-1 help2man=1.49.2 hostname=3.23 init-system-helpers=1.62 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libarchive-zip-perl=1.68-1 libarchive13=3.6.0-1 libasan6=11.3.0-1 libatomic1=12.1.0-2 libattr1=1:2.5.1-1 libaudit-common=1:3.0.7-1 libaudit1=1:3.0.7-1+b1 libbinutils=2.38-4 libblkid1=2.38-4 libbrotli1=1.0.9-2+b3 libbz2-1.0=1.0.8-5 libc-bin=2.33-7 libc-dev-bin=2.33-7 libc6=2.33-7 libc6-dev=2.33-7 libcap-ng0=0.7.9-2.2+b2 libcap2=1:2.44-1 libcc1-0=12.1.0-2 libcom-err2=1.46.5-2 libcrypt-dev=1:4.4.27-1.1 libcrypt1=1:4.4.27-1.1 libctf-nobfd0=2.38-4 libctf0=2.38-4 libcurl4=7.83.1-1+b1 libdb5.3=5.3.28+dfsg1-0.9 libdebconfclient0=0.262 libdebhelper-perl=13.7.1 libdpkg-perl=1.21.7 libelf1=0.187-1 libexpat1=2.4.8-1 libexpat1-dev=2.4.8-1 libffi8=3.4.2-4 libfile-stripnondeterminism-perl=1.13.0-1 libgcc-11-dev=11.3.0-1 libgcc-s1=12.1.0-2 libgcrypt20=1.10.1-2 libgdbm-compat4=1.23-1 libgdbm6=1.23-1 libgmp10=2:6.2.1+dfsg-3 libgnutls30=3.7.4-2 libgomp1=12.1.0-2 libgpg-error0=1.45-2 libgssapi-krb5-2=1.19.2-2+b2 libhogweed6=3.7.3-1 libicu71=71.1-3 libidn2-0=2.3.2-2 libisl23=0.24-2 libitm1=12.1.0-2 libjs-jquery=3.6.0+dfsg+~3.5.13-1 libjs-sphinxdoc=4.5.0-3 libjs-underscore=1.13.3~dfsg+~1.11.4-1 libjsoncpp25=1.9.5-4 libk5crypto3=1.19.2-2+b2 libkeyutils1=1.6.1-3 libkrb5-3=1.19.2-2+b2 libkrb5support0=1.19.2-2+b2 libldap-2.5-0=2.5.12+dfsg-1 liblocale-gettext-perl=1.07-4+b2 liblsan0=12.1.0-2 liblz4-1=1.9.3-2 liblzma5=5.2.5-2.1 libmagic-mgc=1:5.41-4 libmagic1=1:5.41-4 libmount1=2.38-4 libmpc3=1.2.1-2 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libncurses6=6.3+20220423-2 libncursesw6=6.3+20220423-2 libnettle8=3.7.3-1 libnghttp2-14=1.47.0-1+b1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libp11-kit0=0.24.1-1 libpam-modules=1.4.0-13 libpam-modules-bin=1.4.0-13 libpam-runtime=1.4.0-13 libpam0g=1.4.0-13 libpcre2-8-0=10.40-1 libpcre3=2:8.39-14 libperl5.34=5.34.0-4 libpipeline1=1.5.6-1 libprocps8=2:3.3.17-7+b1 libpsl5=0.21.0-1.2 libpython3-dev=3.10.4-1+b1 libpython3-stdlib=3.10.4-1+b1 libpython3.10=3.10.4-4+b1 libpython3.10-dev=3.10.4-4+b1 libpython3.10-minimal=3.10.4-4+b1 libpython3.10-stdlib=3.10.4-4+b1 libquadmath0=12.1.0-2 libreadline8=8.1.2-1.2 librhash0=1.4.2-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.28+dfsg-5 libsasl2-modules-db=2.1.28+dfsg-5 libseccomp2=2.5.4-1 libselinux1=3.3-1+b2 libsigsegv2=2.14-1 libsmartcols1=2.38-4 libsqlite3-0=3.38.5-1 libssh2-1=1.10.0-3+b1 libssl3=3.0.3-4 libstb-dev=0.0~git20210910.af1a5bc+ds-1+b1 libstb0=0.0~git20210910.af1a5bc+ds-1+b1 libstdc++-11-dev=11.3.0-1 libstdc++6=12.1.0-2 libsub-override-perl=0.09-2 libsystemd0=250.4-1 libtasn1-6=4.18.0-4 libtinfo6=6.3+20220423-2 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.7-4 libtsan0=11.3.0-1 libubsan1=12.1.0-2 libuchardet0=0.0.7-1 libudev1=250.4-1 libunistring2=1.0-1 libuuid1=2.38-4 libuv1=1.44.1-2 libxml2=2.9.14+dfsg-1 libzstd1=1.5.2+dfsg-1 linux-libc-dev=5.17.6-1+b1 login=1:4.11.1+dfsg1-2 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.10.2-1 mawk=1.3.4.20200120-3+b1 media-types=8.0.0 ncurses-base=6.3+20220423-2 ncurses-bin=6.3+20220423-2 patch=2.7.6-7 perl=5.34.0-4 perl-base=5.34.0-4 perl-modules-5.34=5.34.0-4 po-debconf=1.0.21+nmu1 procps=2:3.3.17-7+b1 pybind11-dev=2.9.2-1 python3=3.10.4-1+b1 python3-attr=21.2.0-1 python3-dev=3.10.4-1+b1 python3-distutils=3.9.12-1 python3-iniconfig=1.1.1-2 python3-lib2to3=3.9.12-1 python3-minimal=3.10.4-1+b1 python3-more-itertools=8.10.0-2 python3-packaging=21.3-1 python3-pkg-resources=59.6.0-1.2 python3-pluggy=1.0.0-1 python3-py=1.10.0-1 python3-pybind11=2.9.2-1 python3-pyparsing=3.0.7-2 python3-pytest=6.2.5-2 python3-toml=0.10.2-1 python3.10=3.10.4-4+b1 python3.10-dev=3.10.4-4+b1 python3.10-minimal=3.10.4-4+b1 readline-common=8.1.2-1.2 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.03-1 tao-pegtl-dev=3.2.5-2 tar=1.34+dfsg-1 util-linux=2.38-4 util-linux-extra=2.38-4 xz-utils=5.2.5-2.1 zlib1g=1:1.2.11.dfsg-4 zlib1g-dev=1:1.2.11.dfsg-4 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220521T151904Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220521T151904Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220519T145256Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d gemmi=0.5.4+ds-1 && mkdir -p /build/gemmi-NGxQHS && dpkg-source --no-check -x /*.dsc /build/gemmi-NGxQHS/gemmi-0.5.4+ds && chown -R builduser:builduser /build/gemmi-NGxQHS" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/gemmi-NGxQHS/gemmi-0.5.4+ds && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1652958023" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/gemmi-NGxQHS /tmp/gemmi-0.5.4+ds-11pobndy9 bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20220519T145256Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.fODXsYFLRA as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.fODXsYFLRA Reading package lists... Building dependency tree... util-linux is already the newest version (2.38-4). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 135 kB of archives. After this operation, 406 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20220519T145256Z unstable/main amd64 libfakeroot amd64 1.28-1 [48.2 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220519T145256Z unstable/main amd64 fakeroot amd64 1.28-1 [87.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 135 kB in 0s (1084 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4629 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.28-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.28-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.28-1_amd64.deb ... Unpacking fakeroot (1.28-1) ... Setting up libfakeroot:amd64 (1.28-1) ... Setting up fakeroot (1.28-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-7) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220521T151904Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220521T151904Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220519T145256Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.fODXsYFLRA Get:1 http://snapshot.notset.fr/archive/debian/20220521T151904Z bookworm InRelease [130 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20220519T145256Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20220521T151904Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20220521T151904Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20220521T151904Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20220521T151904Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20220521T151904Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20220521T151904Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20220521T151904Z bookworm/main Sources [11.9 MB] Get:4 http://snapshot.notset.fr/archive/debian/20220521T151904Z bookworm/main amd64 Packages [11.5 MB] Fetched 23.5 MB in 20s (1202 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.fODXsYFLRA I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d gemmi=0.5.4+ds-1 && mkdir -p /build/gemmi-NGxQHS && dpkg-source --no-check -x /*.dsc /build/gemmi-NGxQHS/gemmi-0.5.4+ds && chown -R builduser:builduser /build/gemmi-NGxQHS"' exec /tmp/mmdebstrap.fODXsYFLRA Reading package lists... NOTICE: 'gemmi' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debichem-team/gemmi.git Please use: git clone https://salsa.debian.org/debichem-team/gemmi.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1176 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20220521T151904Z bookworm/main gemmi 0.5.4+ds-1 (dsc) [2239 B] Get:2 http://snapshot.notset.fr/archive/debian/20220521T151904Z bookworm/main gemmi 0.5.4+ds-1 (tar) [1168 kB] Get:3 http://snapshot.notset.fr/archive/debian/20220521T151904Z bookworm/main gemmi 0.5.4+ds-1 (diff) [5548 B] Fetched 1176 kB in 1s (1090 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'gemmi_0.5.4+ds-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting gemmi in /build/gemmi-NGxQHS/gemmi-0.5.4+ds dpkg-source: info: unpacking gemmi_0.5.4+ds.orig.tar.xz dpkg-source: info: unpacking gemmi_0.5.4+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use-system-tao-pegtl.patch dpkg-source: info: applying use-system-doctest.patch dpkg-source: info: applying tao-pegtl-3.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/gemmi-NGxQHS/gemmi-0.5.4+ds && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1652958023" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.fODXsYFLRA dpkg-buildpackage: info: source package gemmi dpkg-buildpackage: info: source version 0.5.4+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake --with python3 dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary-arch dh binary-arch --buildsystem=cmake --with python3 dh_update_autotools_config -a -O--buildsystem=cmake dh_autoreconf -a -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/gemmi-NGxQHS/gemmi-0.5.4+ds' dh_auto_configure -- -DUSE_PYTHON=1 -DINSTALL_EGG_INFO=OFF cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DUSE_PYTHON=1 -DINSTALL_EGG_INFO=OFF .. -- The C compiler identification is GNU 11.3.0 -- The CXX compiler identification is GNU 11.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Skipping Fortran bindings. Add -D USE_FORTRAN=1 to build them. -- Compiling with C++ standard: 17 -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- Benchmarks not configured. -- The python module will be built. -- Found PythonInterp: /usr/bin/python3.10 (found version "3.10.4") -- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython3.10.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.9.2") -- Found pybind11 2.9.2: /usr/include;/usr/include/python3.10 -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/gemmi-NGxQHS/gemmi-0.5.4+ds' dh_auto_build -a -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/gemmi-NGxQHS/gemmi-0.5.4+ds -B/build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu/CMakeFiles /build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/input.dir/build.make CMakeFiles/input.dir/depend make -f CMakeFiles/options.dir/build.make CMakeFiles/options.dir/depend make -f CMakeFiles/output.dir/build.make CMakeFiles/output.dir/depend make[3]: Entering directory '/build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu' cd /build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gemmi-NGxQHS/gemmi-0.5.4+ds /build/gemmi-NGxQHS/gemmi-0.5.4+ds /build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu /build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu /build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu/CMakeFiles/options.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu' cd /build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gemmi-NGxQHS/gemmi-0.5.4+ds /build/gemmi-NGxQHS/gemmi-0.5.4+ds /build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu /build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu /build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu/CMakeFiles/input.dir/DependInfo.cmake --color= make -f CMakeFiles/mapcoef.dir/build.make CMakeFiles/mapcoef.dir/depend make -f CMakeFiles/py.dir/build.make CMakeFiles/py.dir/depend make[3]: Entering directory '/build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu' cd /build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gemmi-NGxQHS/gemmi-0.5.4+ds /build/gemmi-NGxQHS/gemmi-0.5.4+ds /build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu /build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu /build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu/CMakeFiles/mapcoef.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu' cd /build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gemmi-NGxQHS/gemmi-0.5.4+ds /build/gemmi-NGxQHS/gemmi-0.5.4+ds /build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu /build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu /build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu/CMakeFiles/py.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu' cd /build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gemmi-NGxQHS/gemmi-0.5.4+ds /build/gemmi-NGxQHS/gemmi-0.5.4+ds /build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu /build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu /build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu/CMakeFiles/output.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/mapcoef.dir/build.make CMakeFiles/mapcoef.dir/build make[3]: Entering directory '/build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/options.dir/build.make CMakeFiles/options.dir/build make[3]: Entering directory '/build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu' [ 2%] Building CXX object CMakeFiles/mapcoef.dir/src/mapcoef.cpp.o /usr/bin/c++ -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/mapcoef.dir/src/mapcoef.cpp.o -MF CMakeFiles/mapcoef.dir/src/mapcoef.cpp.o.d -o CMakeFiles/mapcoef.dir/src/mapcoef.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/src/mapcoef.cpp make[3]: Leaving directory '/build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/input.dir/build.make CMakeFiles/input.dir/build [ 2%] Building CXX object CMakeFiles/options.dir/src/options.cpp.o make -f CMakeFiles/output.dir/build.make CMakeFiles/output.dir/build make[3]: Entering directory '/build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/py.dir/build.make CMakeFiles/py.dir/build make[3]: Entering directory '/build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu' /usr/bin/c++ -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/options.dir/src/options.cpp.o -MF CMakeFiles/options.dir/src/options.cpp.o.d -o CMakeFiles/options.dir/src/options.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/src/options.cpp make[3]: Entering directory '/build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu' [ 4%] Building CXX object CMakeFiles/output.dir/src/output.cpp.o /usr/bin/c++ -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/output.dir/src/output.cpp.o -MF CMakeFiles/output.dir/src/output.cpp.o.d -o CMakeFiles/output.dir/src/output.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/src/output.cpp [ 7%] Building CXX object CMakeFiles/input.dir/src/input.cpp.o /usr/bin/c++ -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/input.dir/src/input.cpp.o -MF CMakeFiles/input.dir/src/input.cpp.o.d -o CMakeFiles/input.dir/src/input.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/src/input.cpp [ 9%] Building CXX object CMakeFiles/py.dir/python/gemmi.cpp.o [ 12%] Building CXX object CMakeFiles/py.dir/python/ccp4.cpp.o /usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -isystem /usr/include/python3.10 -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/gemmi.cpp.o -MF CMakeFiles/py.dir/python/gemmi.cpp.o.d -o CMakeFiles/py.dir/python/gemmi.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/python/gemmi.cpp In file included from /build/gemmi-NGxQHS/gemmi-0.5.4+ds/src/output.cpp:6: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." | ^~~~~~~ /usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -isystem /usr/include/python3.10 -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/ccp4.cpp.o -MF CMakeFiles/py.dir/python/ccp4.cpp.o.d -o CMakeFiles/py.dir/python/ccp4.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/python/ccp4.cpp [ 14%] Building CXX object CMakeFiles/py.dir/python/align.cpp.o [ 14%] Building CXX object CMakeFiles/py.dir/python/mol.cpp.o /usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -isystem /usr/include/python3.10 -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/align.cpp.o -MF CMakeFiles/py.dir/python/align.cpp.o.d -o CMakeFiles/py.dir/python/align.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/python/align.cpp /usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -isystem /usr/include/python3.10 -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/mol.cpp.o -MF CMakeFiles/py.dir/python/mol.cpp.o.d -o CMakeFiles/py.dir/python/mol.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/python/mol.cpp [ 17%] Building CXX object CMakeFiles/py.dir/python/cif.cpp.o /usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -isystem /usr/include/python3.10 -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/cif.cpp.o -MF CMakeFiles/py.dir/python/cif.cpp.o.d -o CMakeFiles/py.dir/python/cif.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/python/cif.cpp [ 17%] Building CXX object CMakeFiles/py.dir/python/chemcomp.cpp.o /usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -isystem /usr/include/python3.10 -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/chemcomp.cpp.o -MF CMakeFiles/py.dir/python/chemcomp.cpp.o.d -o CMakeFiles/py.dir/python/chemcomp.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/python/chemcomp.cpp In file included from /build/gemmi-NGxQHS/gemmi-0.5.4+ds/include/gemmi/to_chemcomp.hpp:10, from /build/gemmi-NGxQHS/gemmi-0.5.4+ds/python/chemcomp.cpp:4: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." | ^~~~~~~ In file included from /build/gemmi-NGxQHS/gemmi-0.5.4+ds/include/gemmi/select.hpp:16, from /build/gemmi-NGxQHS/gemmi-0.5.4+ds/python/align.cpp:5: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." | ^~~~~~~ make[3]: Leaving directory '/build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu' [ 17%] Built target options [ 19%] Building CXX object CMakeFiles/py.dir/python/custom.cpp.o /usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -isystem /usr/include/python3.10 -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/custom.cpp.o -MF CMakeFiles/py.dir/python/custom.cpp.o.d -o CMakeFiles/py.dir/python/custom.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/python/custom.cpp [ 19%] Building CXX object CMakeFiles/py.dir/python/elem.cpp.o /usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -isystem /usr/include/python3.10 -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/elem.cpp.o -MF CMakeFiles/py.dir/python/elem.cpp.o.d -o CMakeFiles/py.dir/python/elem.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/python/elem.cpp [ 21%] Building CXX object CMakeFiles/py.dir/python/grid.cpp.o /usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -isystem /usr/include/python3.10 -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/grid.cpp.o -MF CMakeFiles/py.dir/python/grid.cpp.o.d -o CMakeFiles/py.dir/python/grid.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/python/grid.cpp [ 24%] Building CXX object CMakeFiles/py.dir/python/hkl.cpp.o /usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -isystem /usr/include/python3.10 -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -Wno-psabi -MD -MT CMakeFiles/py.dir/python/hkl.cpp.o -MF CMakeFiles/py.dir/python/hkl.cpp.o.d -o CMakeFiles/py.dir/python/hkl.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/python/hkl.cpp [ 26%] Building CXX object CMakeFiles/py.dir/python/meta.cpp.o /usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -isystem /usr/include/python3.10 -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 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-I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -isystem /usr/include/python3.10 -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -Wno-psabi -MD -MT CMakeFiles/py.dir/python/mtz.cpp.o -MF CMakeFiles/py.dir/python/mtz.cpp.o.d -o CMakeFiles/py.dir/python/mtz.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/python/mtz.cpp make[3]: Leaving directory '/build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu' [ 29%] Built target output [ 31%] Building CXX object CMakeFiles/py.dir/python/read.cpp.o /usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -isystem /usr/include/python3.10 -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto 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It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." | ^~~~~~~ [ 43%] Building CXX object CMakeFiles/py.dir/python/unitcell.cpp.o /usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -isystem /usr/include/python3.10 -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/unitcell.cpp.o -MF CMakeFiles/py.dir/python/unitcell.cpp.o.d -o CMakeFiles/py.dir/python/unitcell.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/python/unitcell.cpp [ 43%] Building CXX object CMakeFiles/py.dir/python/write.cpp.o /usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -isystem /usr/include/python3.10 -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/write.cpp.o -MF CMakeFiles/py.dir/python/write.cpp.o.d -o CMakeFiles/py.dir/python/write.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/python/write.cpp In file included from /build/gemmi-NGxQHS/gemmi-0.5.4+ds/python/write.cpp:4: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." | ^~~~~~~ make -f CMakeFiles/program.dir/build.make CMakeFiles/program.dir/depend make[3]: Entering directory '/build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu' cd /build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gemmi-NGxQHS/gemmi-0.5.4+ds /build/gemmi-NGxQHS/gemmi-0.5.4+ds /build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu /build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu /build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu/CMakeFiles/program.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/program.dir/build.make CMakeFiles/program.dir/build make[3]: Entering directory '/build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu' [ 43%] Building CXX object CMakeFiles/program.dir/src/align.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/align.cpp.o -MF CMakeFiles/program.dir/src/align.cpp.o.d -o CMakeFiles/program.dir/src/align.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/src/align.cpp [ 46%] Building CXX object CMakeFiles/program.dir/src/blobs.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/blobs.cpp.o -MF CMakeFiles/program.dir/src/blobs.cpp.o.d -o CMakeFiles/program.dir/src/blobs.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/src/blobs.cpp [ 48%] Building CXX object CMakeFiles/program.dir/src/cif2mtz.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/cif2mtz.cpp.o -MF CMakeFiles/program.dir/src/cif2mtz.cpp.o.d -o CMakeFiles/program.dir/src/cif2mtz.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/src/cif2mtz.cpp [ 51%] Building CXX object CMakeFiles/program.dir/src/cif2json.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/cif2json.cpp.o -MF CMakeFiles/program.dir/src/cif2json.cpp.o.d -o CMakeFiles/program.dir/src/cif2json.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/src/cif2json.cpp [ 51%] Building CXX object CMakeFiles/program.dir/src/contact.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/contact.cpp.o -MF CMakeFiles/program.dir/src/contact.cpp.o.d -o CMakeFiles/program.dir/src/contact.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/src/contact.cpp [ 53%] Building CXX object CMakeFiles/program.dir/src/contents.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/contents.cpp.o -MF CMakeFiles/program.dir/src/contents.cpp.o.d -o CMakeFiles/program.dir/src/contents.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/src/contents.cpp [ 56%] Building CXX object CMakeFiles/program.dir/src/convert.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/convert.cpp.o -MF CMakeFiles/program.dir/src/convert.cpp.o.d -o CMakeFiles/program.dir/src/convert.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/src/convert.cpp In file included from /build/gemmi-NGxQHS/gemmi-0.5.4+ds/include/gemmi/select.hpp:16, from /build/gemmi-NGxQHS/gemmi-0.5.4+ds/src/convert.cpp:16: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." | ^~~~~~~ [ 56%] Building CXX object CMakeFiles/program.dir/src/fprime.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/fprime.cpp.o -MF CMakeFiles/program.dir/src/fprime.cpp.o.d -o CMakeFiles/program.dir/src/fprime.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/src/fprime.cpp [ 58%] Building CXX object CMakeFiles/program.dir/src/grep.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/grep.cpp.o -MF CMakeFiles/program.dir/src/grep.cpp.o.d -o CMakeFiles/program.dir/src/grep.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/src/grep.cpp [ 60%] Building CXX object CMakeFiles/program.dir/src/h.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/h.cpp.o -MF CMakeFiles/program.dir/src/h.cpp.o.d -o CMakeFiles/program.dir/src/h.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/src/h.cpp [ 63%] Building CXX object CMakeFiles/program.dir/src/json2cif.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/json2cif.cpp.o -MF CMakeFiles/program.dir/src/json2cif.cpp.o.d -o CMakeFiles/program.dir/src/json2cif.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/src/json2cif.cpp [ 63%] Building CXX object CMakeFiles/program.dir/src/main.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/main.cpp.o -MF CMakeFiles/program.dir/src/main.cpp.o.d -o CMakeFiles/program.dir/src/main.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/src/main.cpp [ 65%] Building CXX object CMakeFiles/program.dir/src/map.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/map.cpp.o -MF CMakeFiles/program.dir/src/map.cpp.o.d -o CMakeFiles/program.dir/src/map.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/src/map.cpp [ 68%] Building CXX object CMakeFiles/program.dir/src/map2sf.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/map2sf.cpp.o -MF CMakeFiles/program.dir/src/map2sf.cpp.o.d -o CMakeFiles/program.dir/src/map2sf.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/src/map2sf.cpp [ 68%] Building CXX object CMakeFiles/program.dir/src/mask.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/mask.cpp.o -MF CMakeFiles/program.dir/src/mask.cpp.o.d -o CMakeFiles/program.dir/src/mask.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/src/mask.cpp [ 70%] Building CXX object CMakeFiles/program.dir/src/merge.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/merge.cpp.o -MF CMakeFiles/program.dir/src/merge.cpp.o.d -o CMakeFiles/program.dir/src/merge.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/src/merge.cpp In file included from /build/gemmi-NGxQHS/gemmi-0.5.4+ds/include/gemmi/mtz2cif.hpp:24, from /build/gemmi-NGxQHS/gemmi-0.5.4+ds/src/merge.cpp:14: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." | ^~~~~~~ [ 73%] Building CXX object CMakeFiles/program.dir/src/mondiff.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/mondiff.cpp.o -MF CMakeFiles/program.dir/src/mondiff.cpp.o.d -o CMakeFiles/program.dir/src/mondiff.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/src/mondiff.cpp [ 75%] Linking CXX shared module gemmi.cpython-310-x86_64-linux-gnu.so /usr/bin/cmake -E cmake_link_script CMakeFiles/py.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -flto -Wl,-z,relro -shared -o gemmi.cpython-310-x86_64-linux-gnu.so CMakeFiles/py.dir/python/mol.cpp.o CMakeFiles/py.dir/python/gemmi.cpp.o CMakeFiles/py.dir/python/align.cpp.o CMakeFiles/py.dir/python/ccp4.cpp.o CMakeFiles/py.dir/python/chemcomp.cpp.o CMakeFiles/py.dir/python/cif.cpp.o CMakeFiles/py.dir/python/custom.cpp.o CMakeFiles/py.dir/python/elem.cpp.o CMakeFiles/py.dir/python/grid.cpp.o CMakeFiles/py.dir/python/hkl.cpp.o CMakeFiles/py.dir/python/meta.cpp.o CMakeFiles/py.dir/python/monlib.cpp.o CMakeFiles/py.dir/python/mtz.cpp.o CMakeFiles/py.dir/python/read.cpp.o CMakeFiles/py.dir/python/recgrid.cpp.o CMakeFiles/py.dir/python/scaling.cpp.o CMakeFiles/py.dir/python/search.cpp.o CMakeFiles/py.dir/python/sf.cpp.o CMakeFiles/py.dir/python/sym.cpp.o CMakeFiles/py.dir/python/topo.cpp.o CMakeFiles/py.dir/python/unitcell.cpp.o CMakeFiles/py.dir/python/write.cpp.o /usr/lib/x86_64-linux-gnu/libz.so [ 78%] Building CXX object CMakeFiles/program.dir/src/mtz.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -Wno-psabi -MD -MT CMakeFiles/program.dir/src/mtz.cpp.o -MF CMakeFiles/program.dir/src/mtz.cpp.o.d -o CMakeFiles/program.dir/src/mtz.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/src/mtz.cpp [ 78%] Building CXX object CMakeFiles/program.dir/src/mtz2cif.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/mtz2cif.cpp.o -MF CMakeFiles/program.dir/src/mtz2cif.cpp.o.d -o CMakeFiles/program.dir/src/mtz2cif.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/src/mtz2cif.cpp In file included from /build/gemmi-NGxQHS/gemmi-0.5.4+ds/include/gemmi/mtz2cif.hpp:24, from /build/gemmi-NGxQHS/gemmi-0.5.4+ds/src/mtz2cif.cpp:8: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." | ^~~~~~~ [ 80%] Building CXX object CMakeFiles/program.dir/src/prep.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/prep.cpp.o -MF CMakeFiles/program.dir/src/prep.cpp.o.d -o CMakeFiles/program.dir/src/prep.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/src/prep.cpp In file included from /build/gemmi-NGxQHS/gemmi-0.5.4+ds/include/gemmi/crd.hpp:13, from /build/gemmi-NGxQHS/gemmi-0.5.4+ds/src/prep.cpp:7: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." | ^~~~~~~ [ 82%] Building CXX object CMakeFiles/program.dir/src/reindex.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/reindex.cpp.o -MF CMakeFiles/program.dir/src/reindex.cpp.o.d -o CMakeFiles/program.dir/src/reindex.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/src/reindex.cpp [ 82%] Building CXX object CMakeFiles/program.dir/src/residues.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/residues.cpp.o -MF CMakeFiles/program.dir/src/residues.cpp.o.d -o CMakeFiles/program.dir/src/residues.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/src/residues.cpp In file included from /build/gemmi-NGxQHS/gemmi-0.5.4+ds/include/gemmi/select.hpp:16, from /build/gemmi-NGxQHS/gemmi-0.5.4+ds/src/residues.cpp:5: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." | ^~~~~~~ [ 85%] Building CXX object CMakeFiles/program.dir/src/rmsz.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/rmsz.cpp.o -MF CMakeFiles/program.dir/src/rmsz.cpp.o.d -o CMakeFiles/program.dir/src/rmsz.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/src/rmsz.cpp [ 87%] Building CXX object CMakeFiles/program.dir/src/sf2map.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/sf2map.cpp.o -MF CMakeFiles/program.dir/src/sf2map.cpp.o.d -o CMakeFiles/program.dir/src/sf2map.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/src/sf2map.cpp In file included from /build/gemmi-NGxQHS/gemmi-0.5.4+ds/include/gemmi/select.hpp:16, from /build/gemmi-NGxQHS/gemmi-0.5.4+ds/src/sf2map.cpp:8: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." | ^~~~~~~ [ 90%] Building CXX object CMakeFiles/program.dir/src/sfcalc.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/include -I/build/gemmi-NGxQHS/gemmi-0.5.4+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-NGxQHS/gemmi-0.5.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/sfcalc.cpp.o -MF CMakeFiles/program.dir/src/sfcalc.cpp.o.d -o CMakeFiles/program.dir/src/sfcalc.cpp.o -c /build/gemmi-NGxQHS/gemmi-0.5.4+ds/src/sfcalc.cpp In file included from /build/gemmi-NGxQHS/gemmi-0.5.4+ds/include/gemmi/smcif.hpp:12, from /build/gemmi-NGxQHS/gemmi-0.5.4+ds/src/sfcalc.cpp:20: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. 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/build/gemmi-NGxQHS/gemmi-0.5.4+ds/debian/tmp/usr/include/gemmi/third_party/fast_float/simple_decimal_conversion.h -- Installing: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/debian/tmp/usr/include/gemmi/third_party/pocketfft_hdronly.h -- Installing: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/debian/tmp/usr/include/gemmi/third_party/sajson.h -- Installing: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/debian/tmp/usr/include/gemmi/third_party/tinydir.h -- Installing: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/debian/tmp/usr/include/gemmi/to_chemcomp.hpp -- Installing: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/debian/tmp/usr/include/gemmi/to_cif.hpp -- Installing: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/debian/tmp/usr/include/gemmi/to_json.hpp -- Installing: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/debian/tmp/usr/include/gemmi/to_mmcif.hpp -- Installing: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/debian/tmp/usr/include/gemmi/to_mmdb.hpp -- Installing: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/debian/tmp/usr/include/gemmi/to_pdb.hpp -- Installing: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/debian/tmp/usr/include/gemmi/topo.hpp -- Installing: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/debian/tmp/usr/include/gemmi/unitcell.hpp -- Installing: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/debian/tmp/usr/include/gemmi/utf.hpp -- Installing: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/debian/tmp/usr/include/gemmi/util.hpp -- Installing: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/debian/tmp/usr/include/gemmi/version.hpp -- Installing: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/debian/tmp/usr/include/gemmi/xds_ascii.hpp -- Installing: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/debian/tmp/usr/include/gemmi/cif.hpp -- Installing: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/debian/tmp/usr/local/lib/python3.10/dist-packages/gemmi.cpython-310-x86_64-linux-gnu.so -- Installing: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/debian/tmp/usr/local/lib/python3.10/dist-packages/gemmi-examples -- Installing: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/debian/tmp/usr/local/lib/python3.10/dist-packages/gemmi-examples/__init__.py -- 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/build/gemmi-NGxQHS/gemmi-0.5.4+ds/debian/tmp/usr/local/lib/python3.10/dist-packages/gemmi-examples/hello.py -- Installing: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/debian/tmp/usr/local/lib/python3.10/dist-packages/gemmi-examples/long_geom.py -- Installing: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/debian/tmp/usr/local/lib/python3.10/dist-packages/gemmi-examples/map2mtz.py -- Installing: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/debian/tmp/usr/local/lib/python3.10/dist-packages/gemmi-examples/maskcheck.py -- Installing: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/debian/tmp/usr/local/lib/python3.10/dist-packages/gemmi-examples/maskdiff.py -- Installing: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/debian/tmp/usr/local/lib/python3.10/dist-packages/gemmi-examples/matthews.py -- Installing: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/debian/tmp/usr/local/lib/python3.10/dist-packages/gemmi-examples/merge_mtz_mmcif.py -- Installing: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/debian/tmp/usr/local/lib/python3.10/dist-packages/gemmi-examples/monomers.py -- Installing: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/debian/tmp/usr/local/lib/python3.10/dist-packages/gemmi-examples/mtrix_iso.py -- Installing: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/debian/tmp/usr/local/lib/python3.10/dist-packages/gemmi-examples/mtz_i_sigi.py -- Installing: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/debian/tmp/usr/local/lib/python3.10/dist-packages/gemmi-examples/multiproc.py -- Installing: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/debian/tmp/usr/local/lib/python3.10/dist-packages/gemmi-examples/patterson_slice.py -- Installing: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/debian/tmp/usr/local/lib/python3.10/dist-packages/gemmi-examples/rama_gather.py -- Installing: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/debian/tmp/usr/local/lib/python3.10/dist-packages/gemmi-examples/rama_plot.py -- Installing: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/debian/tmp/usr/local/lib/python3.10/dist-packages/gemmi-examples/simple_search.py -- Installing: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/debian/tmp/usr/local/lib/python3.10/dist-packages/gemmi-examples/sub_ccd.py -- Installing: /build/gemmi-NGxQHS/gemmi-0.5.4+ds/debian/tmp/usr/local/lib/python3.10/dist-packages/gemmi-examples/weight.py make[1]: Leaving directory '/build/gemmi-NGxQHS/gemmi-0.5.4+ds/obj-x86_64-linux-gnu' dh_install -a -O--buildsystem=cmake dh_installdocs -a -O--buildsystem=cmake dh_installchangelogs -a -O--buildsystem=cmake debian/rules override_dh_installman make[1]: Entering directory '/build/gemmi-NGxQHS/gemmi-0.5.4+ds' help2man 'tail -n +9 docs/gemmi-help.txt' \ --version-string 0.5.4+ds --name 'CLI for GEMMI library' \ --no-info --help-option '' > debian/gemmi.1 sed -i 's/.TH GEMMI-HELP.TXT/.TH gemmi/' debian/gemmi.1 sed -i 's/gemmi-help.txt/gemmi/' debian/gemmi.1 dh_installman make[1]: Leaving directory '/build/gemmi-NGxQHS/gemmi-0.5.4+ds' dh_python3 -a -O--buildsystem=cmake dh_installsystemduser -a -O--buildsystem=cmake dh_perl -a -O--buildsystem=cmake dh_link -a -O--buildsystem=cmake dh_strip_nondeterminism -a -O--buildsystem=cmake dh_compress -a -O--buildsystem=cmake dh_fixperms -a -O--buildsystem=cmake dh_missing -a -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dwz: debian/python3-gemmi/usr/lib/python3/dist-packages/gemmi.cpython-310-x86_64-linux-gnu.so: .debug_info section not present dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dh_installdeb -a -O--buildsystem=cmake dh_gencontrol -a -O--buildsystem=cmake dpkg-gencontrol: warning: package python3-gemmi: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -a -O--buildsystem=cmake dh_builddeb -a -O--buildsystem=cmake dpkg-deb: building package 'gemmi' in '../gemmi_0.5.4+ds-1_amd64.deb'. dpkg-deb: building package 'gemmi-dbgsym' in '../gemmi-dbgsym_0.5.4+ds-1_amd64.deb'. dpkg-deb: building package 'python3-gemmi' in '../python3-gemmi_0.5.4+ds-1_amd64.deb'. dpkg-deb: building package 'gemmi-dev' in '../gemmi-dev_0.5.4+ds-1_amd64.deb'. dpkg-genbuildinfo --build=any -O../gemmi_0.5.4+ds-1_amd64.buildinfo dpkg-genchanges --build=any -O../gemmi_0.5.4+ds-1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/gemmi-NGxQHS /tmp/gemmi-0.5.4+ds-11pobndy9 I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.fODXsYFLRA... I: success in 1041.8205 seconds md5: gemmi-dbgsym_0.5.4+ds-1_amd64.deb: OK md5: gemmi-dev_0.5.4+ds-1_amd64.deb: OK md5: gemmi_0.5.4+ds-1_amd64.deb: OK md5: python3-gemmi_0.5.4+ds-1_amd64.deb: OK sha1: gemmi-dbgsym_0.5.4+ds-1_amd64.deb: OK sha1: gemmi-dev_0.5.4+ds-1_amd64.deb: OK sha1: gemmi_0.5.4+ds-1_amd64.deb: OK sha1: python3-gemmi_0.5.4+ds-1_amd64.deb: OK sha256: gemmi-dbgsym_0.5.4+ds-1_amd64.deb: OK sha256: gemmi-dev_0.5.4+ds-1_amd64.deb: OK sha256: gemmi_0.5.4+ds-1_amd64.deb: OK sha256: python3-gemmi_0.5.4+ds-1_amd64.deb: OK Checksums: OK