Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/g/gatk-native-bindings/gatk-native-bindings_1.0.0-2.1_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/gatk-native-bindings-1.0.0-2.1n298iggu/gatk-native-bindings_1.0.0-2.1_all.buildinfo Get source package info: gatk-native-bindings=1.0.0-2.1 Source URL: http://snapshot.notset.fr/mr/package/gatk-native-bindings/1.0.0-2.1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.118 ant=1.10.9-1 ant-optional=1.10.9-1 antlr=2.7.7+dfsg-10 autoconf=2.69-14 automake=1:1.16.3-1 autopoint=0.21-3 autotools-dev=20180224.1+nmu1 base-files=11 base-passwd=3.5.48 bash=5.1-1 binutils=2.35.1-6 binutils-common=2.35.1-6 binutils-x86-64-linux-gnu=2.35.1-6 bnd=5.0.1-2 bsdextrautils=2.36.1-4 bsdutils=1:2.36.1-4 build-essential=12.8 bzip2=1.0.8-4 ca-certificates=20200601 ca-certificates-java=20190909 coreutils=8.32-4+b1 cpp=4:10.2.0-1 cpp-10=10.2.1-3 dash=0.5.11+git20200708+dd9ef66-5 dctrl-tools=2.24-3+b1 debconf=1.5.74 debhelper=13.3.1 debianutils=4.11.2 default-jdk=2:1.11-72 default-jdk-doc=2:1.11-72 default-jdk-headless=2:1.11-72 default-jre=2:1.11-72 default-jre-headless=2:1.11-72 devscripts=2.20.5 dh-autoreconf=19 dh-strip-nondeterminism=1.9.0-1 diffutils=1:3.7-3 dirmngr=2.2.20-1 dpkg=1.20.5 dpkg-dev=1.20.5 dwz=0.13+20201015-2 fakeroot=1.25.3-1.1 file=1:5.39-3 findutils=4.7.0+git20201010-2 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 g++=4:10.2.0-1 g++-10=10.2.1-3 gcc=4:10.2.0-1 gcc-10=10.2.1-3 gcc-10-base=10.2.1-3 gettext=0.21-3 gettext-base=0.21-3 gnupg=2.2.20-1 gnupg-l10n=2.2.20-1 gnupg-utils=2.2.20-1 gpg=2.2.20-1 gpg-agent=2.2.20-1 gpg-wks-client=2.2.20-1 gpg-wks-server=2.2.20-1 gpgconf=2.2.20-1 gpgsm=2.2.20-1 gpgv=2.2.20-1 gradle=4.4.1-12 gradle-debian-helper=2.1 grep=3.6-1 groff-base=1.22.4-5 groovy=2.4.21-1 gzip=1.10-2 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 ivy=2.4.0-5 java-common=0.72 java-wrappers=0.3 javahelper=0.77 junit4=4.13.1-1 libacl1=2.2.53-9 libantlr-java=2.7.7+dfsg-10 libaopalliance-java=20070526-6 libapache-pom-java=18-1 libarchive-zip-perl=1.68-1 libasan6=10.2.1-3 libasm-java=9.0-1 libasound2=1.2.4-1 libasound2-data=1.2.4-1 libassuan0=2.5.3-7.1 libatinject-jsr330-api-java=1.0+ds1-5 libatomic1=10.2.1-3 libattr1=1:2.4.48-6 libaudit-common=1:3.0-1 libaudit1=1:3.0-1 libavahi-client3=0.8-3 libavahi-common-data=0.8-3 libavahi-common3=0.8-3 libb-hooks-op-check-perl=0.22-1+b3 libbcel-java=6.5.0-1 libbcpg-java=1.65-1 libbcprov-java=1.65-1 libbinutils=2.35.1-6 libblkid1=2.36.1-4 libbrotli1=1.0.9-2+b2 libbsd0=0.10.0-1 libbsf-java=1:2.4.0-8 libbsh-java=2.0b4-20 libbz2-1.0=1.0.8-4 libc-bin=2.31-6 libc-dev-bin=2.31-6 libc6=2.31-6 libc6-dev=2.31-6 libcap-ng0=0.7.9-2.2+b1 libcc1-0=10.2.1-3 libcdi-api-java=1.2-2 libclass-method-modifiers-perl=2.13-1 libcom-err2=1.45.6-1 libcommons-cli-java=1.4-2 libcommons-codec-java=1.14-1 libcommons-collections3-java=3.2.2-2 libcommons-compress-java=1.20-1 libcommons-io-java=2.8.0-1 libcommons-lang-java=2.6-9 libcommons-lang3-java=3.11-1 libcommons-logging-java=1.2-2 libcommons-parent-java=43-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-6 libctf0=2.35.1-6 libcups2=2.3.3op1-4 libdb5.3=5.3.28+dfsg1-0.6 libdbus-1-3=1.12.20-1 libdd-plist-java=1.20-1.1 libdebconfclient0=0.255 libdebhelper-perl=13.3.1 libdevel-callchecker-perl=0.008-1+b2 libdom4j-java=2.1.3-1 libdpkg-perl=1.20.5 libdrm-amdgpu1=2.4.103-2 libdrm-common=2.4.103-2 libdrm-intel1=2.4.103-2 libdrm-nouveau2=2.4.103-2 libdrm-radeon1=2.4.103-2 libdrm2=2.4.103-2 libdynaloader-functions-perl=0.003-1.1 libedit2=3.1-20191231-2+b1 libel-api-java=3.0.0-3 libelf1=0.182-2 libencode-locale-perl=1.05-1.1 libexpat1=2.2.10-1 libfakeroot=1.25.3-1.1 libfelix-framework-java=4.6.1-2.1 libfelix-gogo-runtime-java=0.16.2-1.1 libfelix-resolver-java=1.16.0-1 libffi7=3.3-5 libfile-dirlist-perl=0.05-2 libfile-homedir-perl=1.006-1 libfile-listing-perl=6.14-1 libfile-stripnondeterminism-perl=1.9.0-1 libfile-touch-perl=0.11-1 libfile-which-perl=1.23-1 libfindbugs-java=3.1.0~preview2-3 libfontconfig1=2.13.1-4.2 libfreetype6=2.10.4+dfsg-1 libgcc-10-dev=10.2.1-3 libgcc-s1=10.2.1-3 libgcrypt20=1.8.7-2 libgdbm-compat4=1.18.1-5.1 libgdbm6=1.18.1-5.1 libgeronimo-annotation-1.3-spec-java=1.0-1.1 libgeronimo-interceptor-3.0-spec-java=1.0.1-4 libgif7=5.1.9-1 libgl1=1.3.2-1 libgl1-mesa-dri=20.2.6-1 libglapi-mesa=20.2.6-1 libglib2.0-0=2.66.4-1 libglvnd0=1.3.2-1 libglx-mesa0=20.2.6-1 libglx0=1.3.2-1 libgmp10=2:6.2.1+dfsg-1 libgnutls30=3.7.0-3 libgomp1=10.2.1-3 libgoogle-gson-java=2.8.6-1 libgpg-error0=1.38-2 libgradle-core-java=4.4.1-12 libgradle-plugins-java=4.4.1-12 libgraphite2-3=1.3.14-1 libgssapi-krb5-2=1.18.3-4 libguava-java=29.0-6 libguice-java=4.2.3-1 libhamcrest-java=1.3-9 libharfbuzz0b=2.6.7-1 libhawtjni-runtime-java=1.17-1 libhogweed6=3.6-2 libhtml-parser-perl=3.75-1+b1 libhtml-tagset-perl=3.20-4 libhtml-tree-perl=5.07-2 libhttp-cookies-perl=6.09-1 libhttp-date-perl=6.05-1 libhttp-message-perl=6.26-1 libhttp-negotiate-perl=6.01-1 libhttpclient-java=4.5.13-1 libhttpcore-java=4.4.13-1 libicu67=67.1-5 libidn2-0=2.3.0-4 libimport-into-perl=1.002005-1 libio-html-perl=1.001-1.1 libio-pty-perl=1:1.15-2 libio-socket-ssl-perl=2.068-1 libipc-run-perl=20200505.0-1 libisl23=0.23-1 libitm1=10.2.1-3 libjansi-java=1.18-1 libjansi-native-java=1.8-1 libjarjar-java=1.4+svn142-10 libjatl-java=0.2.3-1.1 libjavaewah-java=0.7.9-1 libjaxen-java=1.1.6-4 libjcifs-java=1.3.19-2 libjcip-annotations-java=20060626-5.1 libjcommander-java=1.71-3 libjformatstring-java=0.10~20131207-2.1 libjgit-java=3.7.1-6 libjline2-java=2.14.6-4 libjna-java=5.5.0-1.1 libjna-jni=5.5.0-1.1 libjpeg62-turbo=1:2.0.5-2 libjs-jquery=3.5.1+dfsg+~3.5.5-4 libjsch-java=0.1.55-1 libjsoup-java=1.10.2-2 libjsp-api-java=2.3.4-3 libjsr305-java=0.1~+svn49-11 libjzlib-java=1.1.3-2 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 libkryo-java=2.20-6.2 libksba8=1.5.0-3 liblcms2-2=2.9-4+b1 libldap-2.4-2=2.4.56+dfsg-1 libllvm11=1:11.0.1~+rc2-1 liblogback-java=1:1.2.3-5 liblsan0=10.2.1-3 liblwp-mediatypes-perl=6.04-1 liblwp-protocol-https-perl=6.10-1 liblz4-1=1.9.3-1 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmaven-parent-java=31-2 libmaven-resolver-java=1.4.2-1 libmaven-shared-utils-java=3.3.0-1 libmaven3-core-java=3.6.3-1 libminlog-java=1.3.0-1.1 libmodule-runtime-perl=0.016-1 libmoo-perl=2.004004-1 libmount1=2.36.1-4 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libnative-platform-java=0.14-5 libnative-platform-jni=0.14-5 libncurses6=6.2+20201114-2 libncursesw6=6.2+20201114-2 libnekohtml-java=1.9.22-1.1 libnet-http-perl=6.19-1 libnet-ssleay-perl=1.88-3+b1 libnettle8=3.6-2 libnpth0=1.6-3 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnspr4=2:4.29-1 libnss3=2:3.60-1 libobjenesis-java=3.1-1 libosgi-annotation-java=7.0.0-2 libosgi-compendium-java=7.0.0-1 libosgi-core-java=7.0.0-2 libp11-kit0=0.23.22-1 libpam-modules=1.4.0-2 libpam-modules-bin=1.4.0-2 libpam-runtime=1.4.0-2 libpam0g=1.4.0-2 libparams-classify-perl=0.015-1+b3 libpciaccess0=0.16-1 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libpcsclite1=1.9.0-1 libperl5.32=5.32.0-6 libpipeline1=1.5.3-1 libplexus-cipher-java=1.7-3 libplexus-classworlds-java=2.6.0-1 libplexus-component-annotations-java=2.1.0-1 libplexus-container-default-java=2.1.0-1 libplexus-container-default1.5-java=2.1.0-1 libplexus-interpolation-java=1.26-1 libplexus-sec-dispatcher-java=1.4-4 libplexus-utils2-java=3.3.0-1 libpng16-16=1.6.37-3 libpolyglot-maven-java=0.8~tobrien+git20120905-10 libpython3-stdlib=3.9.1-1 libpython3.9-minimal=3.9.1-1 libpython3.9-stdlib=3.9.1-1 libqdox-java=1.12.1-3 libquadmath0=10.2.1-3 libreadline8=8.1-1 libreflectasm-java=1.05-4.1 librhino-java=1.7.7.2-1 librole-tiny-perl=2.001004-1 libsasl2-2=2.1.27+dfsg-2 libsasl2-modules-db=2.1.27+dfsg-2 libseccomp2=2.5.1-1 libselinux1=3.1-2+b2 libsemanage-common=3.1-1 libsemanage1=3.1-1+b2 libsensors-config=1:3.6.0-2 libsensors5=1:3.6.0-2 libsepol1=3.1-1 libservlet-api-java=4.0.1-2 libservlet3.1-java=1:4.0.1-2 libsigsegv2=2.12-3 libsimple-http-java=4.1.21-1.1 libsisu-inject-java=0.3.3-1 libsisu-plexus-java=0.3.3-3 libslf4j-java=1.7.25-3 libsmartcols1=2.36.1-4 libsqlite3-0=3.34.0-1 libssl1.1=1.1.1i-1 libstdc++-10-dev=10.2.1-3 libstdc++6=10.2.1-3 libstrictures-perl=2.000006-1 libsub-override-perl=0.09-2 libsub-quote-perl=2.006006-1 libsystemd0=247.2-3 libtasn1-6=4.16.0-2 libtimedate-perl=2.3300-1 libtinfo6=6.2+20201114-2 libtirpc-common=1.2.6-3 libtirpc-dev=1.2.6-3 libtirpc3=1.2.6-3 libtool=2.4.6-14 libtry-tiny-perl=0.30-1 libtsan0=10.2.1-3 libubsan1=10.2.1-3 libuchardet0=0.0.7-1 libudev1=247.2-3 libunistring2=0.9.10-4 liburi-perl=5.05-1 libuuid1=2.36.1-4 libvulkan1=1.2.154.1-1 libwagon-file-java=3.3.4-1 libwagon-http-java=3.3.4-1 libwagon-provider-api-java=3.3.4-1 libwebsocket-api-java=1.1-2 libwww-perl=6.51-1 libwww-robotrules-perl=6.02-1 libx11-6=2:1.6.12-1 libx11-data=2:1.6.12-1 libx11-xcb1=2:1.6.12-1 libxau6=1:1.0.8-1+b2 libxbean-reflect-java=4.5-8 libxcb-dri2-0=1.14-2.1 libxcb-dri3-0=1.14-2.1 libxcb-glx0=1.14-2.1 libxcb-present0=1.14-2.1 libxcb-sync1=1.14-2.1 libxcb-xfixes0=1.14-2.1 libxcb1=1.14-2.1 libxdamage1=1:1.1.5-2 libxdmcp6=1:1.1.2-3 libxerces2-java=2.12.1-1 libxext6=2:1.3.3-1.1 libxfixes3=1:5.0.3-2 libxi6=2:1.7.10-1 libxml-commons-external-java=1.4.01-5 libxml-commons-resolver1.1-java=1.2-11 libxml2=2.9.10+dfsg-6.3+b1 libxpp3-java=1.1.4c-3 libxrender1=1:0.9.10-1 libxshmfence1=1.3-1 libxstream-java=1.4.15-1 libxtst6=2:1.2.3-1 libxxf86vm1=1:1.1.4-1+b2 libxz-java=1.8-2 libyaml-snake-java=1.27+ds-1 libz3-4=4.8.9-1 libzstd1=1.4.8+dfsg-1 linux-libc-dev=5.9.15-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 mailcap=3.68 make=4.3-4 man-db=2.9.3-2 maven-repo-helper=1.9.4 mawk=1.3.4.20200120-2 media-types=1.1.0 mime-support=3.66 ncurses-base=6.2+20201114-1 ncurses-bin=6.2+20201114-1 netbase=6.2 openjdk-11-doc=11.0.10+8-1 openjdk-11-jdk=11.0.10+8-1 openjdk-11-jdk-headless=11.0.10+8-1 openjdk-11-jre=11.0.10+8-1 openjdk-11-jre-headless=11.0.10+8-1 openssl=1.1.1i-1 passwd=1:4.8.1-1 patch=2.7.6-6 patchutils=0.4.2-1 perl=5.32.0-6 perl-base=5.32.0-6 perl-modules-5.32=5.32.0-6 perl-openssl-defaults=5 pinentry-curses=1.1.0-4 po-debconf=1.0.21+nmu1 python3=3.9.1-1 python3-minimal=3.9.1-1 python3.9=3.9.1-1 python3.9-minimal=3.9.1-1 readline-common=8.1-1 sed=4.7-1 sensible-utils=0.0.12+nmu1 sysvinit-utils=2.96-5 tar=1.32+dfsg-1 testng=6.9.12-4 tzdata=2020e-1 ucf=3.0043 unzip=6.0-25 util-linux=2.36.1-4 wdiff=1.2.2-2+b1 x11-common=1:7.7+21 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210106T142920Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20201230T203527Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d gatk-native-bindings=1.0.0-2.1 && mkdir -p /build/gatk-native-bindings-1oYpxT && dpkg-source --no-check -x /*.dsc /build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0 && chown -R builduser:builduser /build/gatk-native-bindings-1oYpxT" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1609687596" dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/gatk-native-bindings-1oYpxT /tmp/gatk-native-bindings-1.0.0-2.1n298iggu bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20201230T203527Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.qCE8ALrG0X as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.qCE8ALrG0X Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-4). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20201230T203527Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20201230T203527Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1126 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4648 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-6) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210106T142920Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20201230T203527Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.qCE8ALrG0X Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210106T142920Z unstable InRelease [153 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20201230T203527Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20210106T142920Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20210106T142920Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20210106T142920Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20210106T142920Z unstable/main amd64 Packages [11.6 MB] Fetched 34.3 MB in 28s (1221 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.qCE8ALrG0X I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d gatk-native-bindings=1.0.0-2.1 && mkdir -p /build/gatk-native-bindings-1oYpxT && dpkg-source --no-check -x /*.dsc /build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0 && chown -R builduser:builduser /build/gatk-native-bindings-1oYpxT"' exec /tmp/mmdebstrap.qCE8ALrG0X Reading package lists... NOTICE: 'gatk-native-bindings' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/java-team/gatk-native-bindings.git Please use: git clone https://salsa.debian.org/java-team/gatk-native-bindings.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 61.9 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main gatk-native-bindings 1.0.0-2.1 (dsc) [2187 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main gatk-native-bindings 1.0.0-2.1 (tar) [55.6 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main gatk-native-bindings 1.0.0-2.1 (diff) [4140 B] Fetched 61.9 kB in 0s (483 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'gatk-native-bindings_1.0.0-2.1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting gatk-native-bindings in /build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0 dpkg-source: info: unpacking gatk-native-bindings_1.0.0.orig.tar.xz dpkg-source: info: unpacking gatk-native-bindings_1.0.0-2.1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_build_debian.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1609687596" dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.qCE8ALrG0X dpkg-buildpackage: info: source package gatk-native-bindings dpkg-buildpackage: info: source version 1.0.0-2.1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Holger Levsen dpkg-source --before-build . fakeroot debian/rules clean dh clean --buildsystem=gradle --with javahelper,jh_maven_repo_helper dh_auto_clean -O--buildsystem=gradle sh -c "find . -wholename .*build/tmp | xargs echo | sed -e 's^build/tmp^build^g' | xargs rm -Rf" sh -c "find . -wholename .*build/debian | xargs echo | sed -e 's^build/tmp^build^g' | xargs rm -Rf" rm -Rf /build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/.gradle /build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/buildSrc/.gradle .m2 dh_autoreconf_clean -O--buildsystem=gradle jh_clean -O--buildsystem=gradle rm -fr debian/_jh_manifest* debian/_jh_build* rm -fr debian/.eclipse-build rm -f debian/orbitdeps.debhelper mh_clean -O--buildsystem=gradle debian/rules override_dh_clean make[1]: Entering directory '/build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libgatk-native-bindings-java.substvars debian/files rm -fr -- debian/libgatk-native-bindings-java/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) # also remove bai files that are left after tests rm -f debian/bd-temp-substvars rm -f debian/bd.substvars make[1]: Leaving directory '/build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0' debian/rules build-indep dh build-indep --buildsystem=gradle --with javahelper,jh_maven_repo_helper dh_update_autotools_config -i -O--buildsystem=gradle dh_autoreconf -i -O--buildsystem=gradle dh_auto_configure -i -O--buildsystem=gradle jh_linkjars -i -O--buildsystem=gradle debian/rules override_dh_auto_build make[1]: Entering directory '/build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0' dh_auto_build -- jar mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=gatk-native-bindings -Dfile.encoding=UTF-8 --parallel --max-workers=4 jar Initialized native services in: /build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/.gradle/native Using 4 worker leases. Creating new cache for fileHashes, path /build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@58670130 Creating new cache for resourceHashesCache, path /build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@58670130 Creating new cache for fileHashes, path /build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@7d61eccf WARNING: An illegal reflective access operation has occurred WARNING: Illegal reflective access using Lookup on org.gradle.internal.reflect.JavaMethod (file:/usr/share/gradle/lib/gradle-base-services-4.4.1.jar) to class java.lang.ClassLoader WARNING: Please consider reporting this to the maintainers of org.gradle.internal.reflect.JavaMethod WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations WARNING: All illegal access operations will be denied in a future release Starting Build Compiling initialization script '/build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/.gradle/init.d/init.gradle' using SubsetScriptTransformer. Creating new cache for metadata-1.1/results, path /build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@2676dc05 Compiling initialization script '/build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/.gradle/init.d/init.gradle' using BuildScriptTransformer. Compiling settings file '/build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/settings.gradle' using SubsetScriptTransformer. Compiling settings file '/build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/settings.gradle' using BuildScriptTransformer. Settings evaluated using settings file '/build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/settings.gradle'. Projects loaded. Root project using build file '/build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/build.gradle'. Included projects: [root project 'gatk-native-bindings'] Keep-alive timer started Adding Debian repository to project 'gatk-native-bindings' Parallel execution is an incubating feature. Evaluating root project 'gatk-native-bindings' using build file '/build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/build.gradle'. Compiling build file '/build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/build.gradle' using SubsetScriptTransformer. Compiling build file '/build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/build.gradle' using BuildScriptTransformer. Starting process 'command 'dpkg-parsechangelog''. Working directory: /build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0 Command: dpkg-parsechangelog -S Version Successfully started process 'command 'dpkg-parsechangelog'' build for version:1.0.0 Adding Maven pom generation to project 'gatk-native-bindings' Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : Creating new cache for annotation-processors, path /build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@43df1377 Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar'] Creating new cache for resourceHashesCache, path /build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@7d61eccf Creating new cache for taskHistory, path /build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@102ecb61 Creating new cache for outputFiles, path /build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@4153a832 :compileJava (Thread[Task worker for ':',5,main]) started. :compileJava Putting task artifact state for task ':compileJava' into context took 0.008 secs. Up-to-date check for task ':compileJava' took 0.3 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileJava'. Compiling with JDK Java compiler API. :compileJava (Thread[Task worker for ':',5,main]) completed. Took 4.502 secs. :processResources (Thread[Task worker for ':',5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. file or directory '/build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/src/main/resources', not found Skipping task ':processResources' as it has no source files and no previous output files. :processResources NO-SOURCE :processResources (Thread[Task worker for ':',5,main]) completed. Took 0.086 secs. :classes (Thread[Task worker for ':' Thread 3,5,main]) started. :classes Skipping task ':classes' as it has no actions. :classes (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.002 secs. :debianMavenPom (Thread[Task worker for ':' Thread 3,5,main]) started. :debianMavenPom Putting task artifact state for task ':debianMavenPom' into context took 0.0 secs. Up-to-date check for task ':debianMavenPom' took 0.001 secs. It is not up-to-date because: No history is available. Generating pom file /build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/build/debian/gatk-native-bindings.pom :debianMavenPom (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.304 secs. :jar (Thread[Task worker for ':' Thread 3,5,main]) started. :jar Putting task artifact state for task ':jar' into context took 0.0 secs. Up-to-date check for task ':jar' took 0.011 secs. It is not up-to-date because: No history is available. :jar (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.586 secs. BUILD SUCCESSFUL in 44s 3 actionable tasks: 3 executed make[1]: Leaving directory '/build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0' jh_build -i -O--buildsystem=gradle rm -f debian/libgatk-native-bindings-java.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0' # Tests do not work with locales with a different decimal separator # (for example ',') env LC_ALL=C \ dh_auto_build -- test mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=gatk-native-bindings -Dfile.encoding=UTF-8 --parallel --max-workers=4 test Initialized native services in: /build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/.gradle/native To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-11-openjdk-amd64/bin/java -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' An attempt to start the daemon took 4.292 secs. The client will now receive all logging from the daemon (pid: 2034319). The daemon log file: /build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/.gradle/daemon/4.4.1/daemon-2034319.out.log Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Daemon will be stopped at the end of the build stopping after processing Using 4 worker leases. Creating new cache for fileHashes, path /build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@48dd0d19 Creating new cache for resourceHashesCache, path /build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@48dd0d19 Creating new cache for fileHashes, path /build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@2dd878e8 Starting Build Creating new cache for metadata-1.1/results, path /build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@6994cadf Settings evaluated using settings file '/build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/settings.gradle'. Projects loaded. Root project using build file '/build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/build.gradle'. Included projects: [root project 'gatk-native-bindings'] Keep-alive timer started Adding Debian repository to project 'gatk-native-bindings' Parallel execution is an incubating feature. Evaluating root project 'gatk-native-bindings' using build file '/build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/build.gradle'. Starting process 'command 'dpkg-parsechangelog''. Working directory: /build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0 Command: dpkg-parsechangelog -S Version Successfully started process 'command 'dpkg-parsechangelog'' build for version:1.0.0 Adding Maven pom generation to project 'gatk-native-bindings' Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'test' from project : Creating new cache for annotation-processors, path /build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@414fa15f Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':compileTestJava', task ':processTestResources', task ':testClasses', task ':test'] Creating new cache for resourceHashesCache, path /build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@2dd878e8 Creating new cache for taskHistory, path /build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@4ee08ce7 Creating new cache for outputFiles, path /build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@44a21121 :compileJava (Thread[Daemon worker,5,main]) started. :compileJava Putting task artifact state for task ':compileJava' into context took 0.101 secs. Skipping task ':compileJava' as it is up-to-date (took 0.403 secs). :compileJava UP-TO-DATE :compileJava (Thread[Daemon worker,5,main]) completed. Took 2.104 secs. :processResources (Thread[Daemon worker,5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. file or directory '/build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/src/main/resources', not found Skipping task ':processResources' as it has no source files and no previous output files. :processResources NO-SOURCE :processResources (Thread[Daemon worker,5,main]) completed. Took 0.09 secs. :classes (Thread[Daemon worker,5,main]) started. :classes Skipping task ':classes' as it has no actions. :classes UP-TO-DATE :classes (Thread[Daemon worker,5,main]) completed. Took 0.0 secs. :compileTestJava (Thread[Daemon worker,5,main]) started. :compileTestJava Putting task artifact state for task ':compileTestJava' into context took 0.0 secs. file or directory '/build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/src/test/java', not found Skipping task ':compileTestJava' as it has no source files and no previous output files. :compileTestJava NO-SOURCE :compileTestJava (Thread[Daemon worker,5,main]) completed. Took 0.002 secs. :processTestResources (Thread[Daemon worker,5,main]) started. :processTestResources Putting task artifact state for task ':processTestResources' into context took 0.0 secs. file or directory '/build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/src/test/resources', not found Skipping task ':processTestResources' as it has no source files and no previous output files. :processTestResources NO-SOURCE :processTestResources (Thread[Daemon worker,5,main]) completed. Took 0.001 secs. :testClasses (Thread[Daemon worker,5,main]) started. :testClasses Skipping task ':testClasses' as it has no actions. :testClasses UP-TO-DATE :testClasses (Thread[Daemon worker,5,main]) completed. Took 0.0 secs. :test (Thread[Daemon worker,5,main]) started. :test Putting task artifact state for task ':test' into context took 0.0 secs. Skipping task ':test' as it has no source files and no previous output files. :test NO-SOURCE :test (Thread[Daemon worker,5,main]) completed. Took 0.097 secs. BUILD SUCCESSFUL in 47s 1 actionable task: 1 up-to-date make[1]: Leaving directory '/build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-indep dh binary-indep --buildsystem=gradle --with javahelper,jh_maven_repo_helper dh_testroot -i -O--buildsystem=gradle dh_prep -i -O--buildsystem=gradle rm -f -- debian/libgatk-native-bindings-java.substvars rm -fr -- debian/.debhelper/generated/libgatk-native-bindings-java/ debian/libgatk-native-bindings-java/ debian/tmp/ dh_auto_install -i -O--buildsystem=gradle install -d /build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/debian/libgatk-native-bindings-java jh_installjavadoc -i -O--buildsystem=gradle dh_installdocs -i -O--buildsystem=gradle install -d debian/libgatk-native-bindings-java/usr/share/doc/libgatk-native-bindings-java install -d debian/.debhelper/generated/libgatk-native-bindings-java install -p -m0644 debian/copyright debian/libgatk-native-bindings-java/usr/share/doc/libgatk-native-bindings-java/copyright dh_installchangelogs -i -O--buildsystem=gradle install -p -m0644 debian/changelog debian/libgatk-native-bindings-java/usr/share/doc/libgatk-native-bindings-java/changelog.Debian dh_installinit -i -O--buildsystem=gradle dh_perl -i -O--buildsystem=gradle dh_link -i -O--buildsystem=gradle jh_installlibs -i -O--buildsystem=gradle install -d debian/libgatk-native-bindings-java/usr/share/java install -p -m0644 ./build/libs/gatk-native-bindings-1.0.0.jar debian/libgatk-native-bindings-java/usr/share/java/gatk-native-bindings-1.0.0.jar rm -f debian/libgatk-native-bindings-java/usr/share/java/gatk-native-bindings.jar ln -s gatk-native-bindings-1.0.0.jar debian/libgatk-native-bindings-java/usr/share/java/gatk-native-bindings.jar jh_classpath -i -O--buildsystem=gradle jh_manifest -plibgatk-native-bindings-java --classpath=/usr/lib/jvm/default-java/lib/tools.jar debian/libgatk-native-bindings-java/usr/share/java/gatk-native-bindings.jar Updating symlinked /build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/debian/libgatk-native-bindings-java/usr/share/java/gatk-native-bindings-1.0.0.jar (via debian/libgatk-native-bindings-java/usr/share/java/gatk-native-bindings.jar) Reading manifest from /build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/debian/libgatk-native-bindings-java/usr/share/java/gatk-native-bindings-1.0.0.jar Updating manifest in /build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/debian/libgatk-native-bindings-java/usr/share/java/gatk-native-bindings-1.0.0.jar jh_manifest -i -O--buildsystem=gradle find debian/libgatk-native-bindings-java -name '*.jar' Found usr/share/java/gatk-native-bindings-1.0.0.jar Found symlink usr/share/java/gatk-native-bindings.jar Reading manifest from debian/libgatk-native-bindings-java/usr/share/java/gatk-native-bindings-1.0.0.jar No update of debian/libgatk-native-bindings-java/usr/share/java/gatk-native-bindings-1.0.0.jar required. jh_exec -i -O--buildsystem=gradle jh_depends -i -O--buildsystem=gradle Searching /build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/debian/libgatk-native-bindings-java for libgatk-native-bindings-java Searching /build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/debian/libgatk-native-bindings-java/usr/share/java/gatk-native-bindings-1.0.0.jar Found Jars: /usr/lib/jvm/default-java/lib/tools.jar Checking: /build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0/debian/libgatk-native-bindings-java/usr/lib/jvm/default-java/lib/tools.jar Found Debs: Adding substvars: java:Depends= java:Recommends= mh_installpoms -i -O--buildsystem=gradle mh_installpom --package=libgatk-native-bindings-java --usj-name=gatk-native-bindings debian/pom-gatk-native-bindings.xml mh_cleanpom --package=libgatk-native-bindings-java --rules=debian/maven.rules debian/pom-gatk-native-bindings.xml debian/.mh/pom.xml debian/.mh/pom.properties mv debian/.mh/pom.xml debian/.mh/gatk-native-bindings-debian.pom install -m 644 -D debian/.mh/gatk-native-bindings-1.0.0.pom debian/libgatk-native-bindings-java/usr/share/maven-repo/org/broadinstitute/gatk-native-bindings/1.0.0/gatk-native-bindings-1.0.0.pom install -m 644 -D debian/.mh/gatk-native-bindings-debian.pom debian/libgatk-native-bindings-java/usr/share/maven-repo/org/broadinstitute/gatk-native-bindings/debian/gatk-native-bindings-debian.pom mh_linkjars --skip-clean-poms -i -O--buildsystem=gradle mh_linkjar --package=libgatk-native-bindings-java --skip-clean-pom debian/pom-gatk-native-bindings.xml /usr/share/java/gatk-native-bindings.jar dh_link -plibgatk-native-bindings-java /usr/share/javagatk-native-bindings.jar usr/share/maven-repo/org/broadinstitute/gatk-native-bindings/1.0.0/gatk-native-bindings-1.0.0.jar rm -f debian/libgatk-native-bindings-java/usr/share/java/gatk-native-bindings.jar ln -s gatk-native-bindings-1.0.0.jar debian/libgatk-native-bindings-java/usr/share/java/gatk-native-bindings.jar rm -f debian/libgatk-native-bindings-java/usr/share/maven-repo/org/broadinstitute/gatk-native-bindings/1.0.0/gatk-native-bindings-1.0.0.jar ln -s ../../../../../java/gatk-native-bindings.jar debian/libgatk-native-bindings-java/usr/share/maven-repo/org/broadinstitute/gatk-native-bindings/1.0.0/gatk-native-bindings-1.0.0.jar dh_link -plibgatk-native-bindings-java /usr/share/javagatk-native-bindings.jar usr/share/maven-repo/org/broadinstitute/gatk-native-bindings/debian/gatk-native-bindings-debian.jar rm -f debian/libgatk-native-bindings-java/usr/share/java/gatk-native-bindings.jar ln -s gatk-native-bindings-1.0.0.jar debian/libgatk-native-bindings-java/usr/share/java/gatk-native-bindings.jar rm -f debian/libgatk-native-bindings-java/usr/share/maven-repo/org/broadinstitute/gatk-native-bindings/1.0.0/gatk-native-bindings-1.0.0.jar ln -s ../../../../../java/gatk-native-bindings.jar debian/libgatk-native-bindings-java/usr/share/maven-repo/org/broadinstitute/gatk-native-bindings/1.0.0/gatk-native-bindings-1.0.0.jar rm -f debian/libgatk-native-bindings-java/usr/share/maven-repo/org/broadinstitute/gatk-native-bindings/debian/gatk-native-bindings-debian.jar ln -s ../../../../../java/gatk-native-bindings.jar debian/libgatk-native-bindings-java/usr/share/maven-repo/org/broadinstitute/gatk-native-bindings/debian/gatk-native-bindings-debian.jar dh_strip_nondeterminism -i -O--buildsystem=gradle Using 1609687596 as canonical time Normalizing debian/libgatk-native-bindings-java/usr/share/java/gatk-native-bindings-1.0.0.jar using File::StripNondeterminism::handlers::jar dh_compress -i -O--buildsystem=gradle cd debian/libgatk-native-bindings-java chmod a-x usr/share/doc/libgatk-native-bindings-java/changelog.Debian gzip -9nf usr/share/doc/libgatk-native-bindings-java/changelog.Debian cd '/build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0' dh_fixperms -i -O--buildsystem=gradle find debian/libgatk-native-bindings-java -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libgatk-native-bindings-java ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libgatk-native-bindings-java/usr/share/doc -type f -a -true -a ! -regex 'debian/libgatk-native-bindings-java/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libgatk-native-bindings-java/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libgatk-native-bindings-java -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 dh_missing -i -O--buildsystem=gradle dh_installdeb -i -O--buildsystem=gradle install -d debian/libgatk-native-bindings-java/DEBIAN rm -f debian/libgatk-native-bindings-java.debhelper.log debian/rules override_dh_gencontrol make[1]: Entering directory '/build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0' cat debian/control \ | sed -e '/^Build-.*Depends:/,/^[^[:space:]#]/{s/^Build-.*Depends:/ /;p};d' \ | grep '^[[:space:]]' \ | tr ',' '\n' \ > debian/bd-temp-substvars echo -n "bd:libgatk-native-bindings-java=" > debian/bd.substvars grep 'libgatk-native-bindings-java ' debian/bd-temp-substvars \ | tr "\n" "," \ | sed -e 's/[[:space:]]\+/ /g;s/,$/\n/' \ >> debian/bd.substvars dh_gencontrol -O--buildsystem=gradle -- -Tdebian/bd.substvars echo misc:Depends= >> debian/libgatk-native-bindings-java.substvars echo misc:Pre-Depends= >> debian/libgatk-native-bindings-java.substvars dpkg-gencontrol -plibgatk-native-bindings-java -ldebian/changelog -Tdebian/libgatk-native-bindings-java.substvars -Pdebian/libgatk-native-bindings-java -Tdebian/bd.substvars dpkg-gencontrol: warning: Depends field of package libgatk-native-bindings-java: substitution variable ${maven:Depends} used, but is not defined chmod 0644 -- debian/libgatk-native-bindings-java/DEBIAN/control chown 0:0 -- debian/libgatk-native-bindings-java/DEBIAN/control make[1]: Leaving directory '/build/gatk-native-bindings-1oYpxT/gatk-native-bindings-1.0.0' dh_md5sums -i -O--buildsystem=gradle cd debian/libgatk-native-bindings-java >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libgatk-native-bindings-java/DEBIAN/md5sums chown 0:0 -- debian/libgatk-native-bindings-java/DEBIAN/md5sums dh_builddeb -i -O--buildsystem=gradle dpkg-deb --build debian/libgatk-native-bindings-java .. dpkg-deb: building package 'libgatk-native-bindings-java' in '../libgatk-native-bindings-java_1.0.0-2.1_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../gatk-native-bindings_1.0.0-2.1_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/gatk-native-bindings-1oYpxT /tmp/gatk-native-bindings-1.0.0-2.1n298iggu I: cleaning package lists and apt cache... W: deleting files in /tmp: hsperfdata_root W: deleting files in /tmp: hsperfdata_builduser I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.qCE8ALrG0X... I: success in 784.9045 seconds md5: libgatk-native-bindings-java_1.0.0-2.1_all.deb: OK sha1: libgatk-native-bindings-java_1.0.0-2.1_all.deb: OK sha256: libgatk-native-bindings-java_1.0.0-2.1_all.deb: OK Checksums: OK