Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/g/gatb-core/gatb-core_1.4.2+dfsg-8_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/gatb-core-1.4.2+dfsg-8k8hfnobx/gatb-core_1.4.2+dfsg-8_amd64.buildinfo Get source package info: gatb-core=1.4.2+dfsg-8 Source URL: http://snapshot.notset.fr/mr/package/gatb-core/1.4.2+dfsg-8/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.118 apt=2.3.13 autoconf=2.71-2 automake=1:1.16.5-1.1 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.52 bash=5.1-5+b1 binutils=2.37-10 binutils-common=2.37-10 binutils-x86-64-linux-gnu=2.37-10 bsdextrautils=2.37.2-4 bsdutils=1:2.37.2-4 build-essential=12.9 bzip2=1.0.8-5 cmake=3.22.1-1+b1 cmake-data=3.22.1-1 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-13 d-shlibs=0.104 dash=0.5.11+git20210903+057cd650a4ed-3 debconf=1.5.79 debhelper=13.6 debian-archive-keyring=2021.1.1 debianutils=5.5-1 dh-autoreconf=20 dh-elpa-helper=2.0.10 dh-strip-nondeterminism=1.13.0-1 diffutils=1:3.7-5 doxygen=1.9.1-2 dpkg=1.21.1 dpkg-dev=1.21.1 dwz=0.14-1 emacsen-common=3.0.4 file=1:5.41-2 findutils=4.8.0-1 fontconfig=2.13.1-4.2 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 g++=4:11.2.0-2 g++-11=11.2.0-13 gcc=4:11.2.0-2 gcc-11=11.2.0-13 gcc-11-base=11.2.0-13 gettext=0.21-4 gettext-base=0.21-4 gpgv=2.2.27-3 graphviz=2.42.2-5+b1 grep=3.7-1 groff-base=1.22.4-7 gzip=1.10-4 hdf5-helpers=1.10.7+repack-4 hostname=3.23 init-system-helpers=1.61 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libaec-dev=1.0.6-1 libaec0=1.0.6-1 libann0=1.1.2+doc-7 libapt-pkg6.0=2.3.13 libarchive-zip-perl=1.68-1 libarchive13=3.4.3-2+b1 libasan6=11.2.0-13 libatomic1=11.2.0-13 libattr1=1:2.5.1-1 libaudit-common=1:3.0.6-1 libaudit1=1:3.0.6-1+b1 libbinutils=2.37-10 libblkid1=2.37.2-4 libboost-dev=1.74.0.3 libboost1.74-dev=1.74.0-13 libbrotli1=1.0.9-2+b3 libbsd0=0.11.3-1 libbz2-1.0=1.0.8-5 libc-bin=2.33-1 libc-dev-bin=2.33-1 libc6=2.33-1 libc6-dev=2.33-1 libcairo2=1.16.0-5 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcc1-0=11.2.0-13 libcdt5=2.42.2-5+b1 libcgraph6=2.42.2-5+b1 libclang-cpp11=1:11.1.0-4+b2 libclang1-11=1:11.1.0-4+b2 libcom-err2=1.46.4-1 libcppunit-1.15-0=1.15.1-4 libcppunit-dev=1.15.1-4 libcrypt-dev=1:4.4.27-1 libcrypt1=1:4.4.27-1 libctf-nobfd0=2.37-10 libctf0=2.37-10 libcurl4=7.79.1-2 libcurl4-openssl-dev=7.79.1-2 libdatrie1=0.2.13-2 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.261 libdebhelper-perl=13.6 libdeflate0=1.8-1 libdpkg-perl=1.21.1 libedit2=3.1-20210910-1 libelf1=0.186-1 libexpat1=2.4.1-3 libffi8=3.4.2-3 libfile-stripnondeterminism-perl=1.13.0-1 libfontconfig1=2.13.1-4.2 libfreetype6=2.11.0+dfsg-1 libfribidi0=1.0.8-2 libgcc-11-dev=11.2.0-13 libgcc-s1=11.2.0-13 libgcrypt20=1.9.4-5 libgd3=2.3.0-2 libgdbm-compat4=1.22-1 libgdbm6=1.22-1 libgfortran5=11.2.0-13 libglib2.0-0=2.70.2-1 libgmp10=2:6.2.1+dfsg-3 libgnutls30=3.7.2-4 libgomp1=11.2.0-13 libgpg-error0=1.43-1 libgraphite2-3=1.3.14-1 libgssapi-krb5-2=1.18.3-7 libgts-0.7-5=0.7.6+darcs121130-5 libgvc6=2.42.2-5+b1 libgvpr2=2.42.2-5+b1 libharfbuzz0b=2.7.4-1 libhdf5-103-1=1.10.7+repack-4 libhdf5-cpp-103-1=1.10.7+repack-4 libhdf5-dev=1.10.7+repack-4 libhdf5-fortran-102=1.10.7+repack-4 libhdf5-hl-100=1.10.7+repack-4 libhdf5-hl-cpp-100=1.10.7+repack-4 libhdf5-hl-fortran-100=1.10.7+repack-4 libhogweed6=3.7.3-1 libice6=2:1.0.10-1 libicu67=67.1-7 libidn2-0=2.3.2-2 libisl23=0.24-2 libitm1=11.2.0-13 libjbig0=2.1-3.1+b2 libjpeg-dev=1:2.1.2-1 libjpeg62-turbo=1:2.1.2-1 libjpeg62-turbo-dev=1:2.1.2-1 libjsoncpp-dev=1.9.5-2 libjsoncpp25=1.9.5-2 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 liblab-gamut1=2.42.2-5+b1 libldap-2.4-2=2.4.59+dfsg-1 libllvm11=1:11.1.0-4+b2 liblsan0=11.2.0-13 libltdl7=2.4.6-15 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.41-2 libmagic1=1:5.41-2 libmd0=1.0.4-1 libmount1=2.37.2-4 libmpc3=1.2.1-1 libmpfr6=4.1.0-3 libncurses6=6.3-1 libncursesw6=6.3-1 libnettle8=3.7.3-1 libnghttp2-14=1.43.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libp11-kit0=0.24.0-6 libpam-modules=1.4.0-11 libpam-modules-bin=1.4.0-11 libpam-runtime=1.4.0-11 libpam0g=1.4.0-11 libpango-1.0-0=1.48.10+ds1-1 libpangocairo-1.0-0=1.48.10+ds1-1 libpangoft2-1.0-0=1.48.10+ds1-1 libpathplan4=2.42.2-5+b1 libpcre2-8-0=10.39-3 libpcre3=2:8.39-13 libperl5.32=5.32.1-6 libpipeline1=1.5.4-1 libpixman-1-0=0.40.0-1 libpng16-16=1.6.37-3 libprocps8=2:3.3.17-5 libpsl5=0.21.0-1.2 libquadmath0=11.2.0-13 librhash0=1.4.2-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg2-2 libsasl2-modules-db=2.1.27+dfsg2-2 libseccomp2=2.5.3-2 libselinux1=3.3-1+b1 libsemanage-common=3.3-1 libsemanage2=3.3-1+b1 libsepol2=3.3-1 libsigsegv2=2.13-1 libsm6=2:1.2.3-1 libsmartcols1=2.37.2-4 libssh2-1=1.10.0-2 libssl-dev=1.1.1l-1 libssl1.1=1.1.1l-1 libstdc++-11-dev=11.2.0-13 libstdc++6=11.2.0-13 libsub-override-perl=0.09-2 libsystemd0=249.7-1 libsz2=1.0.6-1 libtasn1-6=4.18.0-4 libthai-data=0.1.29-1 libthai0=0.1.29-1 libtiff5=4.3.0-2 libtinfo6=6.3-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtsan0=11.2.0-13 libubsan1=11.2.0-13 libuchardet0=0.0.7-1 libudev1=249.7-1 libunistring2=0.9.10-6 libuuid1=2.37.2-4 libuv1=1.42.0-1 libwebp6=0.6.1-2.1 libx11-6=2:1.7.2-2+b1 libx11-data=2:1.7.2-2 libxapian30=1.4.18-4 libxau6=1:1.0.9-1 libxaw7=2:1.0.13-1.1 libxcb-render0=1.14-3 libxcb-shm0=1.14-3 libxcb1=1.14-3 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.4-1 libxml2=2.9.12+dfsg-5+b1 libxmu6=2:1.1.2-2+b3 libxpm4=1:3.5.12-1 libxrender1=1:0.9.10-1 libxt6=1:1.2.0-1 libxxhash0=0.8.0-2 libz3-4=4.8.12-1+b1 libzstd1=1.4.8+dfsg-3 linux-libc-dev=5.15.5-2 login=1:4.8.1-2 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-2 mawk=1.3.4.20200120-2 ncurses-base=6.3-1 ncurses-bin=6.3-1 passwd=1:4.8.1-2 patch=2.7.6-7 perl=5.32.1-6 perl-base=5.32.1-6 perl-modules-5.32=5.32.1-6 po-debconf=1.0.21+nmu1 procps=2:3.3.17-5 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.01-1 tar=1.34+dfsg-1 ucf=3.0043 util-linux=2.37.2-4 x11-common=1:7.7+23 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211227T152656Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211227T152656Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211222T152232Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d gatb-core=1.4.2+dfsg-8 && mkdir -p /build/gatb-core-qw7UFz && dpkg-source --no-check -x /*.dsc /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg && chown -R builduser:builduser /build/gatb-core-qw7UFz" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1640162067" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/gatb-core-qw7UFz /tmp/gatb-core-1.4.2+dfsg-8k8hfnobx bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20211222T152232Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.8grjJMMtsI as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.8grjJMMtsI Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-4). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20211222T152232Z unstable/main amd64 libfakeroot amd64 1.26-1 [47.3 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211222T152232Z unstable/main amd64 fakeroot amd64 1.26-1 [87.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (691 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4680 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.26-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.26-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.26-1_amd64.deb ... Unpacking fakeroot (1.26-1) ... Setting up libfakeroot:amd64 (1.26-1) ... Setting up fakeroot (1.26-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-1) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211227T152656Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211227T152656Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211222T152232Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.8grjJMMtsI Get:1 http://snapshot.notset.fr/archive/debian/20211227T152656Z bookworm InRelease [129 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20211222T152232Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20211227T152656Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211227T152656Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211227T152656Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211227T152656Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211227T152656Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211227T152656Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20211227T152656Z bookworm/main Sources [11.8 MB] Get:4 http://snapshot.notset.fr/archive/debian/20211227T152656Z bookworm/main amd64 Packages [11.2 MB] Fetched 23.1 MB in 23s (1000 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.8grjJMMtsI I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d gatb-core=1.4.2+dfsg-8 && mkdir -p /build/gatb-core-qw7UFz && dpkg-source --no-check -x /*.dsc /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg && chown -R builduser:builduser /build/gatb-core-qw7UFz"' exec /tmp/mmdebstrap.8grjJMMtsI Reading package lists... NOTICE: 'gatb-core' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/gatb-core.git Please use: git clone https://salsa.debian.org/med-team/gatb-core.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3044 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20211227T152656Z bookworm/main gatb-core 1.4.2+dfsg-8 (dsc) [2317 B] Get:2 http://snapshot.notset.fr/archive/debian/20211227T152656Z bookworm/main gatb-core 1.4.2+dfsg-8 (tar) [2945 kB] Get:3 http://snapshot.notset.fr/archive/debian/20211227T152656Z bookworm/main gatb-core 1.4.2+dfsg-8 (diff) [97.3 kB] Fetched 3044 kB in 2s (1249 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'gatb-core_1.4.2+dfsg-8.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting gatb-core in /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg dpkg-source: info: unpacking gatb-core_1.4.2+dfsg.orig.tar.xz dpkg-source: info: unpacking gatb-core_1.4.2+dfsg-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_hdf5.patch dpkg-source: info: applying fix_hdf5_includes.patch dpkg-source: info: applying dynamic_lib.patch dpkg-source: info: applying fix_install_location.patch dpkg-source: info: applying set_soversion.patch dpkg-source: info: applying dynamic_linking_of_tools.patch dpkg-source: info: applying multiarch.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying avoid_-msse dpkg-source: info: applying use-int-as-return-of-fgetc.patch dpkg-source: info: applying gatbCoreCompileMinia.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1640162067" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.8grjJMMtsI dpkg-buildpackage: info: source package gatb-core dpkg-buildpackage: info: source version 1.4.2+dfsg-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --sourcedirectory=gatb-core dh_auto_clean -O--sourcedirectory=gatb-core dh_autoreconf_clean -O--sourcedirectory=gatb-core dh_clean -O--sourcedirectory=gatb-core debian/rules binary-arch dh binary-arch --sourcedirectory=gatb-core dh_update_autotools_config -a -O--sourcedirectory=gatb-core dh_autoreconf -a -O--sourcedirectory=gatb-core debian/rules override_dh_auto_configure make[1]: Entering directory '/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg' dh_auto_configure -- cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu ../gatb-core -- The C compiler identification is GNU 11.2.0 -- The CXX compiler identification is GNU 11.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- CppUnit: found headers (in /usr/include) but not the static library (/usr/include/../lib/libcppunit.a) -- CppUnit FOUND (/usr/include) -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of __uint128 -- Check size of __uint128 - failed -- Check size of __uint128_t -- Check size of __uint128_t - done -- Options: -std=c++11 -Wno-invalid-offsetof -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.7") -- HDF5_LIBRARIES="/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so/usr/lib/x86_64-linux-gnu/libcrypto.so/usr/lib/x86_64-linux-gnu/libcurl.so/usr/lib/x86_64-linux-gnu/libpthread.so/usr/lib/x86_64-linux-gnu/libsz.so/usr/lib/x86_64-linux-gnu/libz.so/usr/lib/x86_64-linux-gnu/libdl.so/usr/lib/x86_64-linux-gnu/libm.so" -- OPTIMIZED KMER SIZES INTERVALS ARE 32 64 96 128 <-- max supported kmer size without recompilation CMake Warning (dev) at CMakeLists.txt:199 (set): Cannot set "gatb-core-klist": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. -- ---------- GATB TESTS ---------- -- ---------- GATB TOOLS ---------- DYNAMIC BINARIES for dbgh5 DYNAMIC BINARIES for dbginfo DYNAMIC BINARIES for leon -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.7") found components: C CMake Warning (dev) at CMakeLists.txt:225 (set): Cannot set "gatb-core-flags": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:226 (set): Cannot set "gatb-core-includes": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:227 (set): Cannot set "gatb-core-libraries": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:228 (set): Cannot set "gatb-core-cmake": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Doxygen: /usr/bin/doxygen (found version "1.9.1") found components: doxygen dot -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg' dh_auto_build -a cd obj-x86_64-linux-gnu && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core -B/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/gatbcore-static.dir/build.make src/CMakeFiles/gatbcore-static.dir/depend make -f src/CMakeFiles/gatbcore-dynamic.dir/build.make src/CMakeFiles/gatbcore-dynamic.dir/depend make -f thirdparty/CMakeFiles/thirdparty_copy.dir/build.make thirdparty/CMakeFiles/thirdparty_copy.dir/depend make[4]: Entering directory '/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/thirdparty /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/thirdparty /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/thirdparty/CMakeFiles/thirdparty_copy.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/gatbcore-static.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/gatbcore-dynamic.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' make -f thirdparty/CMakeFiles/thirdparty_copy.dir/build.make thirdparty/CMakeFiles/thirdparty_copy.dir/build make[4]: Entering directory '/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/thirdparty && /usr/bin/cmake -E make_directory /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None/json make[4]: Leaving directory '/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/gatbcore-dynamic.dir/build.make src/CMakeFiles/gatbcore-dynamic.dir/build make[4]: Leaving directory '/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/gatbcore-static.dir/build.make src/CMakeFiles/gatbcore-static.dir/build make[4]: Entering directory '/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/thirdparty && /usr/bin/cmake -E make_directory /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None/BooPHF [ 0%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o [ 1%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o [ 1%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o -c /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/Bank.cpp cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o -c /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankSplitter.cpp [ 1%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o -c /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankAlbum.cpp [ 1%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o [ 1%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o -c /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankHelpers.cpp [ 2%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o -c /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o -c /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankFasta.cpp [ 3%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o -c /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/Bank.cpp cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp [ 4%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o -c /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankRandom.cpp cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/thirdparty && /usr/bin/cmake -E copy_if_different /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/thirdparty/BooPHF/BooPHF.h /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None/BooPHF/ cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/thirdparty && /usr/bin/cmake -E copy_if_different /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/thirdparty/json/json.hpp /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None/json/ make[4]: Leaving directory '/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' [ 4%] Built target thirdparty_copy [ 5%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o -c /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp [ 5%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o -c /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In function ‘bool gatb::core::bank::impl::checkMagic(FILE*)’: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:54:11: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 54 | fread (&value, sizeof(value), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In member function ‘virtual void gatb::core::bank::impl::BankBinary::Iterator::next()’: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:453:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 453 | fread (_bufferData->getBuffer(), sizeof( char),block_size, binary_read_file); // read a block of reads into the buffer | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o -c /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp [ 5%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -MF 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src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o -c /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp [ 6%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp [ 7%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg=. -fstack-protector-strong 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-I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -c /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp [ 8%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -c /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp [ 8%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS 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src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o -c 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomBuilder.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomBuilder.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp [ 12%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Configuration.cpp.o cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Configuration.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Configuration.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Configuration.cpp.o -c /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Configuration.cpp /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In function ‘bool gatb::core::bank::impl::checkMagic(FILE*)’: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:54:11: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 54 | fread (&value, sizeof(value), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In member function ‘virtual void gatb::core::bank::impl::BankBinary::Iterator::next()’: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:453:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 453 | fread (_bufferData->getBuffer(), sizeof( char),block_size, binary_read_file); // read a block of reads into the buffer | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 12%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o -c /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/ConfigurationAlgorithm.cpp [ 13%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -c /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp [ 13%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp [ 13%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o -c /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp [ 14%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/LinearCounter.cpp.o cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/LinearCounter.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/LinearCounter.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/LinearCounter.cpp.o -c /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/LinearCounter.cpp [ 14%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -c /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp [ 14%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Model.cpp.o cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Model.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Model.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Model.cpp.o -c /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp [ 15%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ModelData.cpp.o cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof 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-I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -c /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp [ 17%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemCommon.cpp.o cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include 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55%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o -c 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-g -O2 -ffile-prefix-map=/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/leon.dir/leon.cpp.o -o ../bin/None/leon -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/serial: ../lib/None/libgatbcore.a -ldl -lpthread -lz /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm [ 93%] Linking CXX executable ../bin/None/dbginfo cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/dbginfo.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/dbginfo.dir/dbginfo.cpp.o -o ../bin/None/dbginfo -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/serial: ../lib/None/libgatbcore.a -ldl -lpthread -lz /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm make[4]: Leaving directory '/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' [ 93%] Linking CXX executable ../bin/None/dbgh5 cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/dbgh5.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/dbgh5.dir/dbgh5.cpp.o -o ../bin/None/dbgh5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/serial: ../lib/None/libgatbcore.a -ldl -lpthread -lz /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm [ 93%] Built target leon [ 93%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o cd /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -I/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src -g -O2 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/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/impl/Command.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/impl/IteratorHelpers.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/impl/Observer.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/FastMinimizer.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/Integer.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/LargeInt1.pri -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/LargeInt2.pri -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/LargeInt.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt128.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt16.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt32.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt64.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt8.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Data.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Enums.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/IOptionsParser.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/IProperty.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Macros.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Range.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/StringsRepository.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Vector.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Abundance.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/IHistogram.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Algorithm.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Histogram.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/HostInfo.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/LibraryInfo.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/OptionsParser.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Pool.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Progress.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Property.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/StringLine.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Stringify.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/TimeInfo.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Tokenizer.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Tool.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/XmlReader.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/api -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/api/ICell.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/Cell.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/CollectionFile.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/Storage.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/Storage.tpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/StorageFile.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/StorageTools.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/CollectionHDF5.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/CollectionHDF5Patch.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/StorageHDF5.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/config.hpp -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/test/gatb-core-cppunit -- Set runtime path of "/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/test/gatb-core-cppunit" to "" -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/README.md -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/album.txt -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/celegans_reads.h5 -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/leon1.fastq -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/leon1.fastq.leon-ref -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/leon2.fastq -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/leon2.fastq.leon-ref -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/microsnp.fa -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/query.fa -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/query.fa.gz -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads1.fa -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads1.fa.gz -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads1_list_ids.txt -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads2.fa -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads3.fa.gz -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample.fastq -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample.fastq.gz -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample1.fa -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample1.fa.gz -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample2.fa -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/bin/dbgh5 -- Set runtime path of "/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/bin/dbgh5" to "" -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/bin/dbginfo -- Set runtime path of "/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/bin/dbginfo" to "" -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/bin/leon -- Set runtime path of "/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/bin/leon" to "" -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/BooPHF -- Installing: /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/BooPHF/BooPHF.h make[1]: Leaving directory '/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' debian/rules override_dh_install-arch make[1]: Entering directory '/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg' d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include usr \ --movedev gatb-core/cmake usr/lib \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libgatbcore-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libgatbcore3/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libgatbcore.a debian/libgatbcore-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libgatbcore.so debian/libgatbcore-dev/usr/lib/x86_64-linux-gnu mv /build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 debian/libgatbcore3/usr/lib/x86_64-linux-gnu PKGDEV=libgatbcore-dev PKGSHL=libgatbcore3 install -d -m 755 debian/libgatbcore-dev/usr mv debian/tmp/usr/include debian/libgatbcore-dev/usr install -d -m 755 debian/libgatbcore-dev/usr/lib/x86_64-linux-gnu mv gatb-core/cmake debian/libgatbcore-dev/usr/lib/x86_64-linux-gnu mkdir -p debian/gatb-core/usr/lib/gatb-core dh_install -a make[1]: Leaving directory '/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg' dh_installdocs -a -O--sourcedirectory=gatb-core dh_installchangelogs -a -O--sourcedirectory=gatb-core dh_installexamples -a -O--sourcedirectory=gatb-core dh_installman -a -O--sourcedirectory=gatb-core dh_installsystemduser -a -O--sourcedirectory=gatb-core dh_perl -a -O--sourcedirectory=gatb-core dh_link -a -O--sourcedirectory=gatb-core dh_strip_nondeterminism -a -O--sourcedirectory=gatb-core dh_compress -a -O--sourcedirectory=gatb-core dh_fixperms -a -O--sourcedirectory=gatb-core debian/rules override_dh_missing make[1]: Entering directory '/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg' # test data are installed manually from main source to enable Architecture all builds rm -rf debian/tmp/usr/test/db dh_missing make[1]: Leaving directory '/build/gatb-core-qw7UFz/gatb-core-1.4.2+dfsg' dh_dwz -a -O--sourcedirectory=gatb-core dh_strip -a -O--sourcedirectory=gatb-core dh_makeshlibs -a -O--sourcedirectory=gatb-core dh_shlibdeps -a -O--sourcedirectory=gatb-core dpkg-shlibdeps: warning: symbol H5open used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol pthread_join used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol gzwrite used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol H5check_version used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol pthread_create used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Tset_size used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol gzread used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol gzopen used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Gopen2 used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol pthread_attr_setstacksize used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: 58 other similar warnings have been skipped (use -v to see them all) dh_installdeb -a -O--sourcedirectory=gatb-core dh_gencontrol -a -O--sourcedirectory=gatb-core dh_md5sums -a -O--sourcedirectory=gatb-core dh_builddeb -a -O--sourcedirectory=gatb-core dpkg-deb: building package 'gatb-core' in '../gatb-core_1.4.2+dfsg-8_amd64.deb'. dpkg-deb: building package 'gatb-core-dbgsym' in '../gatb-core-dbgsym_1.4.2+dfsg-8_amd64.deb'. dpkg-deb: building package 'libgatbcore3' in '../libgatbcore3_1.4.2+dfsg-8_amd64.deb'. dpkg-deb: building package 'libgatbcore3-dbgsym' in '../libgatbcore3-dbgsym_1.4.2+dfsg-8_amd64.deb'. dpkg-deb: building package 'libgatbcore-dev' in '../libgatbcore-dev_1.4.2+dfsg-8_amd64.deb'. dpkg-genbuildinfo --build=any -O../gatb-core_1.4.2+dfsg-8_amd64.buildinfo dpkg-genchanges --build=any -O../gatb-core_1.4.2+dfsg-8_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/gatb-core-qw7UFz /tmp/gatb-core-1.4.2+dfsg-8k8hfnobx I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.8grjJMMtsI... I: success in 4673.9677 seconds md5: Value of 'md5' differs for gatb-core-dbgsym_1.4.2+dfsg-8_amd64.deb md5: Size differs for gatb-core-dbgsym_1.4.2+dfsg-8_amd64.deb md5: Value of 'md5' differs for gatb-core_1.4.2+dfsg-8_amd64.deb md5: Size differs for gatb-core_1.4.2+dfsg-8_amd64.deb md5: Value of 'md5' differs for libgatbcore-dev_1.4.2+dfsg-8_amd64.deb md5: Size differs for libgatbcore-dev_1.4.2+dfsg-8_amd64.deb md5: Value of 'md5' differs for libgatbcore3-dbgsym_1.4.2+dfsg-8_amd64.deb md5: Size differs for libgatbcore3-dbgsym_1.4.2+dfsg-8_amd64.deb md5: Value of 'md5' differs for libgatbcore3_1.4.2+dfsg-8_amd64.deb md5: Size differs for libgatbcore3_1.4.2+dfsg-8_amd64.deb sha1: Value of 'sha1' differs for gatb-core-dbgsym_1.4.2+dfsg-8_amd64.deb sha1: Size differs for gatb-core-dbgsym_1.4.2+dfsg-8_amd64.deb sha1: Value of 'sha1' differs for gatb-core_1.4.2+dfsg-8_amd64.deb sha1: Size differs for gatb-core_1.4.2+dfsg-8_amd64.deb sha1: Value of 'sha1' differs for libgatbcore-dev_1.4.2+dfsg-8_amd64.deb sha1: Size differs for libgatbcore-dev_1.4.2+dfsg-8_amd64.deb sha1: Value of 'sha1' differs for libgatbcore3-dbgsym_1.4.2+dfsg-8_amd64.deb sha1: Size differs for libgatbcore3-dbgsym_1.4.2+dfsg-8_amd64.deb sha1: Value of 'sha1' differs for libgatbcore3_1.4.2+dfsg-8_amd64.deb sha1: Size differs for libgatbcore3_1.4.2+dfsg-8_amd64.deb sha256: Value of 'sha256' differs for gatb-core-dbgsym_1.4.2+dfsg-8_amd64.deb sha256: Size differs for gatb-core-dbgsym_1.4.2+dfsg-8_amd64.deb sha256: Value of 'sha256' differs for gatb-core_1.4.2+dfsg-8_amd64.deb sha256: Size differs for gatb-core_1.4.2+dfsg-8_amd64.deb sha256: Value of 'sha256' differs for libgatbcore-dev_1.4.2+dfsg-8_amd64.deb sha256: Size differs for libgatbcore-dev_1.4.2+dfsg-8_amd64.deb sha256: Value of 'sha256' differs for libgatbcore3-dbgsym_1.4.2+dfsg-8_amd64.deb sha256: Size differs for libgatbcore3-dbgsym_1.4.2+dfsg-8_amd64.deb sha256: Value of 'sha256' differs for libgatbcore3_1.4.2+dfsg-8_amd64.deb sha256: Size differs for libgatbcore3_1.4.2+dfsg-8_amd64.deb Checksums: FAIL Cannot generate diffoscope for gatb-core-dbgsym_1.4.2+dfsg-8_amd64.deb: Cannot find URL: http://snapshot.notset.fr/mr/file/ca4be992a48bff3aaf1747c544bc6025d8d803b55faf241f65ac6deb5cb8bda7/download diffoscope run passed diffoscope run passed Cannot generate diffoscope for libgatbcore3-dbgsym_1.4.2+dfsg-8_amd64.deb: Cannot find URL: http://snapshot.notset.fr/mr/file/6b9dda4b2ff24ecdad2f3f4349d92e2c0eb7bcf80056e803bec0e865dea47663/download diffoscope run passed