Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/g/gatb-core/gatb-core_1.4.2+dfsg-8_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/gatb-core-1.4.2+dfsg-8f9rqv212/gatb-core_1.4.2+dfsg-8_all.buildinfo Get source package info: gatb-core=1.4.2+dfsg-8 Source URL: http://snapshot.notset.fr/mr/package/gatb-core/1.4.2+dfsg-8/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.118 apt=2.3.13 autoconf=2.71-2 automake=1:1.16.5-1.1 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.52 bash=5.1-5+b1 binutils=2.37-10 binutils-common=2.37-10 binutils-x86-64-linux-gnu=2.37-10 bsdextrautils=2.37.2-4 bsdutils=1:2.37.2-4 build-essential=12.9 bzip2=1.0.8-5 cmake=3.22.1-1+b1 cmake-data=3.22.1-1 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-13 d-shlibs=0.104 dash=0.5.11+git20210903+057cd650a4ed-3 debconf=1.5.79 debhelper=13.6 debian-archive-keyring=2021.1.1 debianutils=5.5-1 dh-autoreconf=20 dh-elpa-helper=2.0.10 dh-strip-nondeterminism=1.13.0-1 diffutils=1:3.7-5 doxygen=1.9.1-2 dpkg=1.21.1 dpkg-dev=1.21.1 dwz=0.14-1 emacsen-common=3.0.4 file=1:5.41-2 findutils=4.8.0-1 fontconfig=2.13.1-4.2 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 g++=4:11.2.0-2 g++-11=11.2.0-13 gcc=4:11.2.0-2 gcc-11=11.2.0-13 gcc-11-base=11.2.0-13 gettext=0.21-4 gettext-base=0.21-4 gpgv=2.2.27-3 graphviz=2.42.2-5+b1 grep=3.7-1 groff-base=1.22.4-7 gzip=1.10-4 hdf5-helpers=1.10.7+repack-4 hostname=3.23 init-system-helpers=1.61 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libaec-dev=1.0.6-1 libaec0=1.0.6-1 libann0=1.1.2+doc-7 libapt-pkg6.0=2.3.13 libarchive-zip-perl=1.68-1 libarchive13=3.4.3-2+b1 libasan6=11.2.0-13 libatomic1=11.2.0-13 libattr1=1:2.5.1-1 libaudit-common=1:3.0.6-1 libaudit1=1:3.0.6-1+b1 libbinutils=2.37-10 libblkid1=2.37.2-4 libboost-dev=1.74.0.3 libboost1.74-dev=1.74.0-13 libbrotli1=1.0.9-2+b3 libbsd0=0.11.3-1 libbz2-1.0=1.0.8-5 libc-bin=2.33-1 libc-dev-bin=2.33-1 libc6=2.33-1 libc6-dev=2.33-1 libcairo2=1.16.0-5 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcc1-0=11.2.0-13 libcdt5=2.42.2-5+b1 libcgraph6=2.42.2-5+b1 libclang-cpp11=1:11.1.0-4+b2 libclang1-11=1:11.1.0-4+b2 libcom-err2=1.46.4-1 libcppunit-1.15-0=1.15.1-4 libcppunit-dev=1.15.1-4 libcrypt-dev=1:4.4.27-1 libcrypt1=1:4.4.27-1 libctf-nobfd0=2.37-10 libctf0=2.37-10 libcurl4=7.79.1-2 libcurl4-openssl-dev=7.79.1-2 libdatrie1=0.2.13-2 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.261 libdebhelper-perl=13.6 libdeflate0=1.8-1 libdpkg-perl=1.21.1 libedit2=3.1-20210910-1 libelf1=0.186-1 libexpat1=2.4.1-3 libffi8=3.4.2-3 libfile-stripnondeterminism-perl=1.13.0-1 libfontconfig1=2.13.1-4.2 libfreetype6=2.11.0+dfsg-1 libfribidi0=1.0.8-2 libgcc-11-dev=11.2.0-13 libgcc-s1=11.2.0-13 libgcrypt20=1.9.4-5 libgd3=2.3.0-2 libgdbm-compat4=1.22-1 libgdbm6=1.22-1 libgfortran5=11.2.0-13 libglib2.0-0=2.70.2-1 libgmp10=2:6.2.1+dfsg-3 libgnutls30=3.7.2-4 libgomp1=11.2.0-13 libgpg-error0=1.43-1 libgraphite2-3=1.3.14-1 libgssapi-krb5-2=1.18.3-7 libgts-0.7-5=0.7.6+darcs121130-5 libgvc6=2.42.2-5+b1 libgvpr2=2.42.2-5+b1 libharfbuzz0b=2.7.4-1 libhdf5-103-1=1.10.7+repack-4 libhdf5-cpp-103-1=1.10.7+repack-4 libhdf5-dev=1.10.7+repack-4 libhdf5-fortran-102=1.10.7+repack-4 libhdf5-hl-100=1.10.7+repack-4 libhdf5-hl-cpp-100=1.10.7+repack-4 libhdf5-hl-fortran-100=1.10.7+repack-4 libhogweed6=3.7.3-1 libice6=2:1.0.10-1 libicu67=67.1-7 libidn2-0=2.3.2-2 libisl23=0.24-2 libitm1=11.2.0-13 libjbig0=2.1-3.1+b2 libjpeg-dev=1:2.1.2-1 libjpeg62-turbo=1:2.1.2-1 libjpeg62-turbo-dev=1:2.1.2-1 libjsoncpp-dev=1.9.5-2 libjsoncpp25=1.9.5-2 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 liblab-gamut1=2.42.2-5+b1 libldap-2.4-2=2.4.59+dfsg-1 libllvm11=1:11.1.0-4+b2 liblsan0=11.2.0-13 libltdl7=2.4.6-15 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.41-2 libmagic1=1:5.41-2 libmd0=1.0.4-1 libmount1=2.37.2-4 libmpc3=1.2.1-1 libmpfr6=4.1.0-3 libncurses6=6.3-1 libncursesw6=6.3-1 libnettle8=3.7.3-1 libnghttp2-14=1.43.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libp11-kit0=0.24.0-6 libpam-modules=1.4.0-11 libpam-modules-bin=1.4.0-11 libpam-runtime=1.4.0-11 libpam0g=1.4.0-11 libpango-1.0-0=1.48.10+ds1-1 libpangocairo-1.0-0=1.48.10+ds1-1 libpangoft2-1.0-0=1.48.10+ds1-1 libpathplan4=2.42.2-5+b1 libpcre2-8-0=10.39-3 libpcre3=2:8.39-13 libperl5.32=5.32.1-6 libpipeline1=1.5.4-1 libpixman-1-0=0.40.0-1 libpng16-16=1.6.37-3 libprocps8=2:3.3.17-5 libpsl5=0.21.0-1.2 libquadmath0=11.2.0-13 librhash0=1.4.2-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg2-2 libsasl2-modules-db=2.1.27+dfsg2-2 libseccomp2=2.5.3-2 libselinux1=3.3-1+b1 libsemanage-common=3.3-1 libsemanage2=3.3-1+b1 libsepol2=3.3-1 libsigsegv2=2.13-1 libsm6=2:1.2.3-1 libsmartcols1=2.37.2-4 libssh2-1=1.10.0-2 libssl-dev=1.1.1l-1 libssl1.1=1.1.1l-1 libstdc++-11-dev=11.2.0-13 libstdc++6=11.2.0-13 libsub-override-perl=0.09-2 libsystemd0=249.7-1 libsz2=1.0.6-1 libtasn1-6=4.18.0-4 libthai-data=0.1.29-1 libthai0=0.1.29-1 libtiff5=4.3.0-2 libtinfo6=6.3-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtsan0=11.2.0-13 libubsan1=11.2.0-13 libuchardet0=0.0.7-1 libudev1=249.7-1 libunistring2=0.9.10-6 libuuid1=2.37.2-4 libuv1=1.42.0-1 libwebp6=0.6.1-2.1 libx11-6=2:1.7.2-2+b1 libx11-data=2:1.7.2-2 libxapian30=1.4.18-4 libxau6=1:1.0.9-1 libxaw7=2:1.0.13-1.1 libxcb-render0=1.14-3 libxcb-shm0=1.14-3 libxcb1=1.14-3 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.4-1 libxml2=2.9.12+dfsg-5+b1 libxmu6=2:1.1.2-2+b3 libxpm4=1:3.5.12-1 libxrender1=1:0.9.10-1 libxt6=1:1.2.0-1 libxxhash0=0.8.0-2 libz3-4=4.8.12-1+b1 libzstd1=1.4.8+dfsg-3 linux-libc-dev=5.15.5-2 login=1:4.8.1-2 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-2 mawk=1.3.4.20200120-2 ncurses-base=6.3-1 ncurses-bin=6.3-1 passwd=1:4.8.1-2 patch=2.7.6-7 perl=5.32.1-6 perl-base=5.32.1-6 perl-modules-5.32=5.32.1-6 po-debconf=1.0.21+nmu1 procps=2:3.3.17-5 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.01-1 tar=1.34+dfsg-1 ucf=3.0043 util-linux=2.37.2-4 x11-common=1:7.7+23 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211227T152656Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211227T152656Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211222T152232Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d gatb-core=1.4.2+dfsg-8 && mkdir -p /build/gatb-core-HJ6IFq && dpkg-source --no-check -x /*.dsc /build/gatb-core-HJ6IFq/gatb-core-1.4.2+dfsg && chown -R builduser:builduser /build/gatb-core-HJ6IFq" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/gatb-core-HJ6IFq/gatb-core-1.4.2+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1640162067" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/gatb-core-HJ6IFq /tmp/gatb-core-1.4.2+dfsg-8f9rqv212 bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20211222T152232Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.fG8CMXXXcc as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.fG8CMXXXcc Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-4). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20211222T152232Z unstable/main amd64 libfakeroot amd64 1.26-1 [47.3 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211222T152232Z unstable/main amd64 fakeroot amd64 1.26-1 [87.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (845 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4680 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.26-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.26-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.26-1_amd64.deb ... Unpacking fakeroot (1.26-1) ... Setting up libfakeroot:amd64 (1.26-1) ... Setting up fakeroot (1.26-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-1) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211227T152656Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211227T152656Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211222T152232Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.fG8CMXXXcc Get:1 http://snapshot.notset.fr/archive/debian/20211227T152656Z bookworm InRelease [129 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20211222T152232Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20211227T152656Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211227T152656Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211227T152656Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211227T152656Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211227T152656Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211227T152656Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20211227T152656Z bookworm/main Sources [11.8 MB] Get:4 http://snapshot.notset.fr/archive/debian/20211227T152656Z bookworm/main amd64 Packages [11.2 MB] Fetched 23.1 MB in 20s (1178 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.fG8CMXXXcc I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d gatb-core=1.4.2+dfsg-8 && mkdir -p /build/gatb-core-HJ6IFq && dpkg-source --no-check -x /*.dsc /build/gatb-core-HJ6IFq/gatb-core-1.4.2+dfsg && chown -R builduser:builduser /build/gatb-core-HJ6IFq"' exec /tmp/mmdebstrap.fG8CMXXXcc Reading package lists... NOTICE: 'gatb-core' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/gatb-core.git Please use: git clone https://salsa.debian.org/med-team/gatb-core.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3044 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20211227T152656Z bookworm/main gatb-core 1.4.2+dfsg-8 (dsc) [2317 B] Get:2 http://snapshot.notset.fr/archive/debian/20211227T152656Z bookworm/main gatb-core 1.4.2+dfsg-8 (tar) [2945 kB] Get:3 http://snapshot.notset.fr/archive/debian/20211227T152656Z bookworm/main gatb-core 1.4.2+dfsg-8 (diff) [97.3 kB] Fetched 3044 kB in 2s (1240 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'gatb-core_1.4.2+dfsg-8.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting gatb-core in /build/gatb-core-HJ6IFq/gatb-core-1.4.2+dfsg dpkg-source: info: unpacking gatb-core_1.4.2+dfsg.orig.tar.xz dpkg-source: info: unpacking gatb-core_1.4.2+dfsg-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_hdf5.patch dpkg-source: info: applying fix_hdf5_includes.patch dpkg-source: info: applying dynamic_lib.patch dpkg-source: info: applying fix_install_location.patch dpkg-source: info: applying set_soversion.patch dpkg-source: info: applying dynamic_linking_of_tools.patch dpkg-source: info: applying multiarch.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying avoid_-msse dpkg-source: info: applying use-int-as-return-of-fgetc.patch dpkg-source: info: applying gatbCoreCompileMinia.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/gatb-core-HJ6IFq/gatb-core-1.4.2+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1640162067" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.fG8CMXXXcc dpkg-buildpackage: info: source package gatb-core dpkg-buildpackage: info: source version 1.4.2+dfsg-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . debian/rules clean dh clean --sourcedirectory=gatb-core dh_auto_clean -O--sourcedirectory=gatb-core dh_autoreconf_clean -O--sourcedirectory=gatb-core dh_clean -O--sourcedirectory=gatb-core debian/rules binary-indep dh binary-indep --sourcedirectory=gatb-core dh_update_autotools_config -i -O--sourcedirectory=gatb-core dh_autoreconf -i -O--sourcedirectory=gatb-core debian/rules override_dh_auto_configure make[1]: Entering directory '/build/gatb-core-HJ6IFq/gatb-core-1.4.2+dfsg' dh_auto_configure -- cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu ../gatb-core -- The C compiler identification is GNU 11.2.0 -- The CXX compiler identification is GNU 11.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- CppUnit: found headers (in /usr/include) but not the static library (/usr/include/../lib/libcppunit.a) -- CppUnit FOUND (/usr/include) -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of __uint128 -- Check size of __uint128 - failed -- Check size of __uint128_t -- Check size of __uint128_t - done -- Options: -std=c++11 -Wno-invalid-offsetof -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.7") -- HDF5_LIBRARIES="/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so/usr/lib/x86_64-linux-gnu/libcrypto.so/usr/lib/x86_64-linux-gnu/libcurl.so/usr/lib/x86_64-linux-gnu/libpthread.so/usr/lib/x86_64-linux-gnu/libsz.so/usr/lib/x86_64-linux-gnu/libz.so/usr/lib/x86_64-linux-gnu/libdl.so/usr/lib/x86_64-linux-gnu/libm.so" -- OPTIMIZED KMER SIZES INTERVALS ARE 32 64 96 128 <-- max supported kmer size without recompilation CMake Warning (dev) at CMakeLists.txt:199 (set): Cannot set "gatb-core-klist": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. -- ---------- GATB TESTS ---------- -- ---------- GATB TOOLS ---------- DYNAMIC BINARIES for dbgh5 DYNAMIC BINARIES for dbginfo DYNAMIC BINARIES for leon -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.7") found components: C CMake Warning (dev) at CMakeLists.txt:225 (set): Cannot set "gatb-core-flags": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:226 (set): Cannot set "gatb-core-includes": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:227 (set): Cannot set "gatb-core-libraries": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:228 (set): Cannot set "gatb-core-cmake": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Doxygen: /usr/bin/doxygen (found version "1.9.1") found components: doxygen dot -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/gatb-core-HJ6IFq/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/gatb-core-HJ6IFq/gatb-core-1.4.2+dfsg' debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/gatb-core-HJ6IFq/gatb-core-1.4.2+dfsg' echo "Save time of autobuilders and do nothing ... unfortunately this does not seem to work" Save time of autobuilders and do nothing ... unfortunately this does not seem to work make[1]: Leaving directory '/build/gatb-core-HJ6IFq/gatb-core-1.4.2+dfsg' dh: command-omitted: The call to "dh_auto_test -i -O--sourcedirectory=gatb-core" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -i -O--sourcedirectory=gatb-core dh_prep -i -O--sourcedirectory=gatb-core debian/rules override_dh_auto_install-indep make[1]: Entering directory '/build/gatb-core-HJ6IFq/gatb-core-1.4.2+dfsg' echo "Nothing to do here" Nothing to do here make[1]: Leaving directory '/build/gatb-core-HJ6IFq/gatb-core-1.4.2+dfsg' dh_install -i -O--sourcedirectory=gatb-core dh_installdocs -i -O--sourcedirectory=gatb-core dh_installchangelogs -i -O--sourcedirectory=gatb-core dh_installexamples -i -O--sourcedirectory=gatb-core dh_installman -i -O--sourcedirectory=gatb-core dh_installsystemduser -i -O--sourcedirectory=gatb-core dh_perl -i -O--sourcedirectory=gatb-core dh_link -i -O--sourcedirectory=gatb-core dh_strip_nondeterminism -i -O--sourcedirectory=gatb-core dh_compress -i -O--sourcedirectory=gatb-core dh_fixperms -i -O--sourcedirectory=gatb-core debian/rules override_dh_missing make[1]: Entering directory '/build/gatb-core-HJ6IFq/gatb-core-1.4.2+dfsg' # test data are installed manually from main source to enable Architecture all builds rm -rf debian/tmp/usr/test/db dh_missing make[1]: Leaving directory '/build/gatb-core-HJ6IFq/gatb-core-1.4.2+dfsg' dh_installdeb -i -O--sourcedirectory=gatb-core dh_gencontrol -i -O--sourcedirectory=gatb-core dh_md5sums -i -O--sourcedirectory=gatb-core dh_builddeb -i -O--sourcedirectory=gatb-core dpkg-deb: building package 'gatb-core-testdata' in '../gatb-core-testdata_1.4.2+dfsg-8_all.deb'. dpkg-genbuildinfo --build=all -O../gatb-core_1.4.2+dfsg-8_all.buildinfo dpkg-genchanges --build=all -O../gatb-core_1.4.2+dfsg-8_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/gatb-core-HJ6IFq /tmp/gatb-core-1.4.2+dfsg-8f9rqv212 I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.fG8CMXXXcc... I: success in 477.7811 seconds md5: gatb-core-testdata_1.4.2+dfsg-8_all.deb: OK sha1: gatb-core-testdata_1.4.2+dfsg-8_all.deb: OK sha256: gatb-core-testdata_1.4.2+dfsg-8_all.deb: OK Checksums: OK