Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/g/gatb-core/gatb-core_1.4.2+dfsg-6_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/gatb-core-1.4.2+dfsg-6bril6t_z/gatb-core_1.4.2+dfsg-6_amd64.buildinfo Get source package info: gatb-core=1.4.2+dfsg-6 Source URL: http://snapshot.notset.fr/mr/package/gatb-core/1.4.2+dfsg-6/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.118 apt=2.1.12 autoconf=2.69-11.1 automake=1:1.16.3-1 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.48 bash=5.1~rc3-1 binutils=2.35.1-3 binutils-common=2.35.1-3 binutils-x86-64-linux-gnu=2.35.1-3 bsdextrautils=2.36.1-2 bsdutils=1:2.36.1-2 build-essential=12.8 bzip2=1.0.8-4 cmake=3.18.4-1 cmake-data=3.18.4-1 coreutils=8.32-4+b1 cpp=4:10.2.0-1 cpp-10=10.2.0-19 d-shlibs=0.95 dash=0.5.11+git20200708+dd9ef66-2 debconf=1.5.74 debhelper=13.2.1 debian-archive-keyring=2019.1 debianutils=4.11.2 dh-autoreconf=19 dh-strip-nondeterminism=1.9.0-1 diffutils=1:3.7-3 doxygen=1.8.20-4 dpkg=1.20.5 dpkg-dev=1.20.5 dwz=0.13-5 file=1:5.39-3 findutils=4.7.0+git20201010-2 fontconfig=2.13.1-4.2 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 g++=4:10.2.0-1 g++-10=10.2.0-19 gcc=4:10.2.0-1 gcc-10=10.2.0-19 gcc-10-base=10.2.0-19 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 gpgv=2.2.20-1 graphviz=2.42.2-4+b2 grep=3.6-1 groff-base=1.22.4-5 gzip=1.10-2 hdf5-helpers=1.10.6+repack-2 hostname=3.23 init-system-helpers=1.59 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-8 libaec-dev=1.0.4-1 libaec0=1.0.4-1 libann0=1.1.2+doc-7 libapt-pkg6.0=2.1.12 libarchive-zip-perl=1.68-1 libarchive13=3.4.3-2 libasan6=10.2.0-19 libatomic1=10.2.0-19 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-3.1 libaudit1=1:2.8.5-3.1 libbinutils=2.35.1-3 libblkid1=2.36.1-2 libboost-dev=1.71.0.3 libboost1.71-dev=1.71.0-7+b1 libbrotli1=1.0.9-2+b1 libbsd0=0.10.0-1 libbz2-1.0=1.0.8-4 libc-bin=2.31-4 libc-dev-bin=2.31-4 libc6=2.31-4 libc6-dev=2.31-4 libcairo2=1.16.0-4 libcap-ng0=0.7.9-2.2+b1 libcc1-0=10.2.0-19 libcdt5=2.42.2-4+b2 libcgraph6=2.42.2-4+b2 libclang-cpp9=1:9.0.1-15+b1 libclang1-9=1:9.0.1-15+b1 libcom-err2=1.45.6-1 libcppunit-1.15-0=1.15.1-2 libcppunit-dev=1.15.1-2 libcroco3=0.6.13-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-3 libctf0=2.35.1-3 libcurl4=7.72.0-1 libdatrie1=0.2.12-3 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.255 libdebhelper-perl=13.2.1 libdpkg-perl=1.20.5 libedit2=3.1-20191231-1 libelf1=0.182-1 libexpat1=2.2.10-1 libffi7=3.3-5 libfile-stripnondeterminism-perl=1.9.0-1 libfontconfig1=2.13.1-4.2 libfreetype6=2.10.2+dfsg-4 libfribidi0=1.0.8-2 libgcc-10-dev=10.2.0-19 libgcc-s1=10.2.0-19 libgcrypt20=1.8.7-2 libgd3=2.3.0-2 libgdbm-compat4=1.18.1-5.1 libgdbm6=1.18.1-5.1 libgfortran5=10.2.0-19 libglib2.0-0=2.66.3-1 libgmp10=2:6.2.1+dfsg-1 libgnutls30=3.6.15-4 libgomp1=10.2.0-19 libgpg-error0=1.38-2 libgraphite2-3=1.3.14-1 libgssapi-krb5-2=1.18.3-4 libgts-0.7-5=0.7.6+darcs121130-4+b1 libgvc6=2.42.2-4+b2 libgvpr2=2.42.2-4+b2 libharfbuzz0b=2.6.7-1 libhdf5-103-1=1.10.6+repack-2 libhdf5-cpp-103-1=1.10.6+repack-2 libhdf5-dev=1.10.6+repack-2 libhdf5-fortran-102=1.10.6+repack-2 libhdf5-hl-100=1.10.6+repack-2 libhdf5-hl-cpp-100=1.10.6+repack-2 libhdf5-hl-fortran-100=1.10.6+repack-2 libhogweed6=3.6-2 libice6=2:1.0.10-1 libicu67=67.1-4 libidn2-0=2.3.0-4 libisl23=0.23-1 libitm1=10.2.0-19 libjbig0=2.1-3.1+b2 libjpeg-dev=1:2.0.5-1.1 libjpeg62-turbo=1:2.0.5-1.1 libjpeg62-turbo-dev=1:2.0.5-1.1 libjsoncpp-dev=1.7.4-3.1 libjsoncpp1=1.7.4-3.1 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 liblab-gamut1=2.42.2-4+b2 libldap-2.4-2=2.4.56+dfsg-1 libllvm9=1:9.0.1-15+b1 liblsan0=10.2.0-19 libltdl7=2.4.6-14 liblz4-1=1.9.2-2 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmount1=2.36.1-2 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libncurses6=6.2+20201114-1 libncursesw6=6.2+20201114-1 libnettle8=3.6-2 libnghttp2-14=1.42.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnss-nis=3.1-4 libnss-nisplus=1.3-4 libp11-kit0=0.23.21-2 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpango-1.0-0=1.46.2-3 libpangocairo-1.0-0=1.46.2-3 libpangoft2-1.0-0=1.46.2-3 libpathplan4=2.42.2-4+b2 libpcre2-8-0=10.34-7 libpcre3=2:8.39-13 libperl5.32=5.32.0-5 libpipeline1=1.5.3-1 libpixman-1-0=0.36.0-1 libpng16-16=1.6.37-3 libprocps8=2:3.3.16-5 libpsl5=0.21.0-1.1 libquadmath0=10.2.0-19 librhash0=1.4.0-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg-2 libsasl2-modules-db=2.1.27+dfsg-2 libseccomp2=2.5.0-3 libselinux1=3.1-2+b1 libsemanage-common=3.1-1 libsemanage1=3.1-1+b1 libsepol1=3.1-1 libsigsegv2=2.12-2 libsm6=2:1.2.3-1 libsmartcols1=2.36.1-2 libssh2-1=1.8.0-2.1 libssl1.1=1.1.1h-1 libstdc++-10-dev=10.2.0-19 libstdc++6=10.2.0-19 libsub-override-perl=0.09-2 libsystemd0=246.6-5 libsz2=1.0.4-1 libtasn1-6=4.16.0-2 libthai-data=0.1.28-3 libthai0=0.1.28-3 libtiff5=4.1.0+git191117-2 libtinfo6=6.2+20201114-1 libtirpc-common=1.2.6-3 libtirpc-dev=1.2.6-3 libtirpc3=1.2.6-3 libtool=2.4.6-14 libtsan0=10.2.0-19 libubsan1=10.2.0-19 libuchardet0=0.0.7-1 libudev1=246.6-5 libunistring2=0.9.10-4 libuuid1=2.36.1-2 libuv1=1.40.0-1 libwebp6=0.6.1-2+b1 libx11-6=2:1.6.12-1 libx11-data=2:1.6.12-1 libxapian30=1.4.17-1 libxau6=1:1.0.8-1+b2 libxaw7=2:1.0.13-1+b2 libxcb-render0=1.14-2 libxcb-shm0=1.14-2 libxcb1=1.14-2 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.3-1+b2 libxml2=2.9.10+dfsg-6.3 libxmu6=2:1.1.2-2+b3 libxpm4=1:3.5.12-1 libxrender1=1:0.9.10-1 libxt6=1:1.2.0-1 libz3-4=4.8.9-1 libzstd1=1.4.5+dfsg-4 linux-libc-dev=5.9.11-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 ncurses-base=6.2+20201114-1 ncurses-bin=6.2+20201114-1 passwd=1:4.8.1-1 patch=2.7.6-6 perl=5.32.0-5 perl-base=5.32.0-5 perl-modules-5.32=5.32.0-5 po-debconf=1.0.21 procps=2:3.3.16-5 sed=4.7-1 sensible-utils=0.0.12+nmu1 sysvinit-utils=2.96-5 tar=1.32+dfsg-1 ucf=3.0043 util-linux=2.36.1-2 x11-common=1:7.7+21 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201201T091156Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d gatb-core=1.4.2+dfsg-6 && mkdir -p /build/gatb-core-is6xwW && dpkg-source --no-check -x /*.dsc /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg && chown -R builduser:builduser /build/gatb-core-is6xwW" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1606925371" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/gatb-core-is6xwW /tmp/gatb-core-1.4.2+dfsg-6bril6t_z bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20201201T091156Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.VKJe41KL1k as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.VKJe41KL1k Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-2). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20201201T091156Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20201201T091156Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (701 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4697 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-4) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201201T091156Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.VKJe41KL1k Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20201201T091156Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 20s (1115 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.VKJe41KL1k I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d gatb-core=1.4.2+dfsg-6 && mkdir -p /build/gatb-core-is6xwW && dpkg-source --no-check -x /*.dsc /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg && chown -R builduser:builduser /build/gatb-core-is6xwW"' exec /tmp/mmdebstrap.VKJe41KL1k Reading package lists... NOTICE: 'gatb-core' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/gatb-core.git Please use: git clone https://salsa.debian.org/med-team/gatb-core.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3043 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main gatb-core 1.4.2+dfsg-6 (dsc) [2317 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main gatb-core 1.4.2+dfsg-6 (tar) [2945 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main gatb-core 1.4.2+dfsg-6 (diff) [95.5 kB] Fetched 3043 kB in 2s (1236 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'gatb-core_1.4.2+dfsg-6.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting gatb-core in /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg dpkg-source: info: unpacking gatb-core_1.4.2+dfsg.orig.tar.xz dpkg-source: info: unpacking gatb-core_1.4.2+dfsg-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_hdf5.patch dpkg-source: info: applying fix_hdf5_includes.patch dpkg-source: info: applying dynamic_lib.patch dpkg-source: info: applying fix_install_location.patch dpkg-source: info: applying set_soversion.patch dpkg-source: info: applying dynamic_linking_of_tools.patch dpkg-source: info: applying multiarch.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying avoid_-msse dpkg-source: info: applying use-int-as-return-of-fgetc.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1606925371" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.VKJe41KL1k dpkg-buildpackage: info: source package gatb-core dpkg-buildpackage: info: source version 1.4.2+dfsg-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --sourcedirectory=gatb-core dh_auto_clean -O--sourcedirectory=gatb-core dh_autoreconf_clean -O--sourcedirectory=gatb-core dh_clean -O--sourcedirectory=gatb-core debian/rules binary-arch dh binary-arch --sourcedirectory=gatb-core dh_update_autotools_config -a -O--sourcedirectory=gatb-core dh_autoreconf -a -O--sourcedirectory=gatb-core debian/rules override_dh_auto_configure make[1]: Entering directory '/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg' dh_auto_configure -- cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu ../gatb-core -- The C compiler identification is GNU 10.2.0 -- The CXX compiler identification is GNU 10.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- CppUnit: found headers (in /usr/include) but not the static library (/usr/include/../lib/libcppunit.a) -- CppUnit FOUND (/usr/include) -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of __uint128 -- Check size of __uint128 - failed -- Check size of __uint128_t -- Check size of __uint128_t - done -- Options: -std=c++11 -Wno-invalid-offsetof -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.6") -- HDF5_LIBRARIES="/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so/usr/lib/x86_64-linux-gnu/libpthread.so/usr/lib/x86_64-linux-gnu/libsz.so/usr/lib/x86_64-linux-gnu/libz.so/usr/lib/x86_64-linux-gnu/libdl.so/usr/lib/x86_64-linux-gnu/libm.so" -- OPTIMIZED KMER SIZES INTERVALS ARE 32 64 96 128 <-- max supported kmer size without recompilation CMake Warning (dev) at CMakeLists.txt:199 (set): Cannot set "gatb-core-klist": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. -- ---------- GATB TESTS ---------- -- ---------- GATB TOOLS ---------- DYNAMIC BINARIES for dbgh5 DYNAMIC BINARIES for dbginfo DYNAMIC BINARIES for leon -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.6") found components: C CMake Warning (dev) at CMakeLists.txt:225 (set): Cannot set "gatb-core-flags": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:226 (set): Cannot set "gatb-core-includes": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:227 (set): Cannot set "gatb-core-libraries": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:228 (set): Cannot set "gatb-core-cmake": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Doxygen: /usr/bin/doxygen (found version "1.8.20") found components: doxygen dot -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg' dh_auto_build -a cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core -B/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/gatbcore-dynamic.dir/build.make src/CMakeFiles/gatbcore-dynamic.dir/depend make -f src/CMakeFiles/gatbcore-static.dir/build.make src/CMakeFiles/gatbcore-static.dir/depend make[4]: Entering directory '/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' cd /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/gatbcore-dynamic.dir/DependInfo.cmake --color= make -f thirdparty/CMakeFiles/thirdparty_copy.dir/build.make thirdparty/CMakeFiles/thirdparty_copy.dir/depend make[4]: Entering directory '/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' cd /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/thirdparty /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/thirdparty /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/thirdparty/CMakeFiles/thirdparty_copy.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' cd /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/gatbcore-static.dir/DependInfo.cmake --color= Scanning dependencies of target thirdparty_copy make[4]: Leaving directory '/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' make -f thirdparty/CMakeFiles/thirdparty_copy.dir/build.make thirdparty/CMakeFiles/thirdparty_copy.dir/build make[4]: Entering directory '/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' cd /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/thirdparty && /usr/bin/cmake -E make_directory /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None/json cd /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/thirdparty && /usr/bin/cmake -E make_directory /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None/BooPHF cd /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/thirdparty && /usr/bin/cmake -E copy_if_different /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/thirdparty/BooPHF/BooPHF.h /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None/BooPHF/ cd /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/thirdparty && /usr/bin/cmake -E copy_if_different /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/thirdparty/json/json.hpp /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None/json/ make[4]: Leaving directory '/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' [ 0%] Built target thirdparty_copy Scanning dependencies of target gatbcore-dynamic make[4]: Leaving directory '/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/gatbcore-dynamic.dir/build.make src/CMakeFiles/gatbcore-dynamic.dir/build Scanning dependencies of target gatbcore-static make[4]: Leaving directory '/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/gatbcore-static.dir/build.make src/CMakeFiles/gatbcore-static.dir/build make[4]: Entering directory '/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' [ 0%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o cd /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o -c /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/Bank.cpp [ 0%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o cd /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o -c /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp make[4]: Entering directory '/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' [ 1%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o cd /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o -c /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankAlbum.cpp [ 2%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o cd /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o -c /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/Bank.cpp /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In function ‘bool gatb::core::bank::impl::checkMagic(FILE*)’: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:54:11: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 54 | fread (&value, sizeof(value), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In member function ‘virtual void gatb::core::bank::impl::BankBinary::Iterator::next()’: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:453:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 453 | fread (_bufferData->getBuffer(), sizeof( char),block_size, binary_read_file); // read a block of reads into the buffer | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 3%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o cd /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp [ 3%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o cd /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o -c /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankFasta.cpp [ 3%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o cd /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -c /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankAlbum.cpp [ 3%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o cd /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o -c /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankHelpers.cpp [ 4%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o cd /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o -c /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankRandom.cpp [ 4%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o cd /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o -c /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankSplitter.cpp [ 5%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o cd /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o -c /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp [ 6%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o cd /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -c /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp [ 6%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o cd /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o -c /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp [ 6%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o cd /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o -c /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In function ‘bool gatb::core::bank::impl::checkMagic(FILE*)’: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:54:11: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 54 | fread (&value, sizeof(value), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In member function ‘virtual void gatb::core::bank::impl::BankBinary::Iterator::next()’: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:453:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 453 | fread (_bufferData->getBuffer(), sizeof( char),block_size, binary_read_file); // read a block of reads into the buffer | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 7%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o cd /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o -c /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp [ 7%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o cd /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp [ 7%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o cd /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c 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Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Graph.cpp.o cd /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Graph.cpp.o -c /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp [ 8%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o cd 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-I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -c /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp [ 10%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o cd /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -c /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankRandom.cpp [ 11%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o cd /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg=. 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CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o -c /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp [ 11%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o cd /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o -c 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src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o cd /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o -c /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp [ 12%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o cd /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ 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Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadMacos.cpp.o cd /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadMacos.cpp.o -c /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/ThreadMacos.cpp [ 28%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/collections/impl/Bloom.cpp.o cd 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-I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -c /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp [ 29%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o cd /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp [ 30%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/Leon.cpp.o cd /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat 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Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Observer.cpp.o cd /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Observer.cpp.o -c /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/designpattern/impl/Observer.cpp [ 32%] Building CXX object 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make[4]: Leaving directory '/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' make -f test/unit/CMakeFiles/gatb-core-cppunit.dir/build.make test/unit/CMakeFiles/gatb-core-cppunit.dir/build make[4]: Entering directory '/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' [ 88%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bank/TestBank.cpp.o cd /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -I/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -Wformat 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../../bin/None/gatb-core-cppunit -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/serial: ../../lib/None/libgatbcore.a -ldl -lpthread -lz /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libpthread.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/x86_64-linux-gnu/libcppunit.so make[4]: Leaving directory '/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' [100%] Built target gatb-core-cppunit make[3]: Leaving directory '/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' make[1]: Leaving directory '/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg' dh_auto_test -a -O--sourcedirectory=gatb-core create-stamp debian/debhelper-build-stamp dh_testroot -a -O--sourcedirectory=gatb-core dh_prep -a -O--sourcedirectory=gatb-core dh_auto_install -a -O--sourcedirectory=gatb-core cd obj-x86_64-linux-gnu && make -j4 install DESTDIR=/build/gatb-core-is6xwW/gatb-core-1.4.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/gatb-core -B/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: 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/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Algorithm.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/StringsRepository.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Abundance.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Vector.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Data.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/IOptionsParser.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Enums.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/IHistogram.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Macros.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/IProperty.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Range.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/compression -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/compression/HeaderCoder.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/compression/DnaCoder.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/compression/Leon.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/compression/CompressionUtils.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/compression/RangeCoder.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/CollectionHDF5.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/CollectionHDF5Patch.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/CollectionFile.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/StorageFile.hpp -- Installing: 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/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/impl -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/impl/IteratorHelpers.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/impl/Observer.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/impl/Command.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/api -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/api/Iterator.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/api/ICommand.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/api/IObserver.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/FastMinimizer.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/LargeInt2.pri -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt64.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/LargeInt1.pri -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/LargeInt.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt16.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt8.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/Integer.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt32.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt128.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/ThreadMacos.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/TimeCommon.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/System.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/ThreadLinux.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/FileSystemMacos.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/FileSystemLinux.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/MemoryCommon.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/SystemInfoCommon.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/FileSystemCommon.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/ITime.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/IFileSystem.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/IMemory.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/ISmartPointer.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/IThread.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/config_sha1.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/ISystemInfo.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/types.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/Exception.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/config.hpp -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/test/gatb-core-cppunit -- Set runtime path of "/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/test/gatb-core-cppunit" to "" -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads1_list_ids.txt -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample.fastq.gz -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample.fastq -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/leon2.fastq.leon-ref -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample2.fa -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads2.fa -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/microsnp.fa -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads3.fa.gz -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/leon1.fastq -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads1.fa -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample1.fa -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/query.fa.gz -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads1.fa.gz -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/album.txt -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/leon2.fastq -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/leon1.fastq.leon-ref -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample1.fa.gz -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/README.md -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/query.fa -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/celegans_reads.h5 -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/bin/dbgh5 -- Set runtime path of "/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/bin/dbgh5" to "" -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/bin/dbginfo -- Set runtime path of "/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/bin/dbginfo" to "" -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/bin/leon -- Set runtime path of "/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/bin/leon" to "" -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/BooPHF -- Installing: /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/BooPHF/BooPHF.h make[1]: Leaving directory '/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' debian/rules override_dh_install-arch make[1]: Entering directory '/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg' d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include usr \ --movedev gatb-core/cmake usr/lib \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libgatbcore-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libgatbcore3/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libgatbcore.a debian/libgatbcore-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libgatbcore.so debian/libgatbcore-dev/usr/lib/x86_64-linux-gnu mv /build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 debian/libgatbcore3/usr/lib/x86_64-linux-gnu PKGDEV=libgatbcore-dev PKGSHL=libgatbcore3 install -d -m 755 debian/libgatbcore-dev/usr mv debian/tmp/usr/include debian/libgatbcore-dev/usr install -d -m 755 debian/libgatbcore-dev/usr/lib/x86_64-linux-gnu mv gatb-core/cmake debian/libgatbcore-dev/usr/lib/x86_64-linux-gnu mkdir -p debian/gatb-core/usr/lib/gatb-core dh_install -a make[1]: Leaving directory '/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg' dh_installdocs -a -O--sourcedirectory=gatb-core dh_installchangelogs -a -O--sourcedirectory=gatb-core dh_installexamples -a -O--sourcedirectory=gatb-core dh_installman -a -O--sourcedirectory=gatb-core dh_installsystemduser -a -O--sourcedirectory=gatb-core dh_perl -a -O--sourcedirectory=gatb-core dh_link -a -O--sourcedirectory=gatb-core dh_strip_nondeterminism -a -O--sourcedirectory=gatb-core dh_compress -a -O--sourcedirectory=gatb-core dh_fixperms -a -O--sourcedirectory=gatb-core debian/rules override_dh_missing make[1]: Entering directory '/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg' # test data are installed manually from main source to enable Architecture all builds rm -rf debian/tmp/usr/test/db dh_missing make[1]: Leaving directory '/build/gatb-core-is6xwW/gatb-core-1.4.2+dfsg' dh_dwz -a -a -O--sourcedirectory=gatb-core dh_strip -a -a -O--sourcedirectory=gatb-core dh_makeshlibs -a -a -O--sourcedirectory=gatb-core dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libgatbcore3/DEBIAN/symbols doesn't match completely debian/libgatbcore3.symbols.amd64 --- debian/libgatbcore3.symbols.amd64 (libgatbcore3_1.4.2+dfsg-6_amd64) +++ dpkg-gensymbolsi0LhH6 2021-10-12 23:34:27.073216358 +0000 @@ -8534,81 +8534,97 @@ _ZNSt13__future_base11_Task_stateISt5_BindIFZN4gatb4core8debruijn4impl10prepare_ufILi128EEEvNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPNS3_4bank5IBankEiRiiiRmmEUliE_St12_PlaceholderILi1EEEESaIiEFviEE8_M_resetEv@Base 1.4.2 _ZNSt13__future_base11_Task_stateISt5_BindIFZN4gatb4core8debruijn4impl10prepare_ufILi128EEEvNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPNS3_4bank5IBankEiRiiiRmmEUliE_St12_PlaceholderILi1EEEESaIiEFviEED0Ev@Base 1.4.2 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_ZNSt23_Sp_counted_ptr_inplaceISt13packaged_taskIFviEESaIS2_ELN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 1.4.2 _ZNSt23_Sp_counted_ptr_inplaceISt13packaged_taskIFviEESaIS2_ELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv@Base 1.4.2 _ZNSt23_Sp_counted_ptr_inplaceISt13packaged_taskIFviEESaIS2_ELN9__gnu_cxx12_Lock_policyE2EE14_M_get_deleterERKSt9type_info@Base 1.4.2 _ZNSt23_Sp_counted_ptr_inplaceISt13packaged_taskIFviEESaIS2_ELN9__gnu_cxx12_Lock_policyE2EED0Ev@Base 1.4.2 _ZNSt23_Sp_counted_ptr_inplaceISt13packaged_taskIFviEESaIS2_ELN9__gnu_cxx12_Lock_policyE2EED1Ev@Base 1.4.2 + _ZNSt23_Sp_counted_ptr_inplaceISt13packaged_taskIFviEESaIS2_ELN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.4.2+dfsg-6 _ZNSt23mersenne_twister_engineImLm64ELm312ELm156ELm31ELm13043109905998158313ELm29ELm6148914691236517205ELm17ELm8202884508482404352ELm37ELm18444473444759240704ELm43ELm6364136223846793005EE11_M_gen_randEv@Base 1.4.2 _ZNSt27__uninitialized_default_n_1ILb0EE18__uninit_default_nIPN3dag11rank_vectorEmEET_S5_T0_@Base 1.4.2 _ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN4json4JSONESt4lessIS5_ESaISt4pairIKS5_S7_EEEC1ISt17_Rb_tree_iteratorISC_EEET_SI_@Base 1.4.2 dh_shlibdeps -a -a -O--sourcedirectory=gatb-core dpkg-shlibdeps: warning: symbol gzopen used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol H5T_NATIVE_UINT64_g used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Pset_deflate used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Dread used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol gzseek used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol H5T_C_S1_g used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Tset_size used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Tset_precision used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol gzerror used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol gztell used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: 58 other similar warnings have been skipped (use -v to see them all) dh_installdeb -a -O--sourcedirectory=gatb-core dh_gencontrol -a -O--sourcedirectory=gatb-core dh_md5sums -a -O--sourcedirectory=gatb-core dh_builddeb -a -O--sourcedirectory=gatb-core dpkg-deb: building package 'libgatbcore-dev' in '../libgatbcore-dev_1.4.2+dfsg-6_amd64.deb'. dpkg-deb: building package 'libgatbcore3' in '../libgatbcore3_1.4.2+dfsg-6_amd64.deb'. dpkg-deb: building package 'gatb-core' in '../gatb-core_1.4.2+dfsg-6_amd64.deb'. dpkg-deb: building package 'libgatbcore3-dbgsym' in '../libgatbcore3-dbgsym_1.4.2+dfsg-6_amd64.deb'. dpkg-deb: building package 'gatb-core-dbgsym' in '../gatb-core-dbgsym_1.4.2+dfsg-6_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../gatb-core_1.4.2+dfsg-6_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/gatb-core-is6xwW /tmp/gatb-core-1.4.2+dfsg-6bril6t_z I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.VKJe41KL1k... I: success in 6803.9797 seconds md5: Value of 'md5' differs for gatb-core-dbgsym_1.4.2+dfsg-6_amd64.deb md5: Size differs for gatb-core-dbgsym_1.4.2+dfsg-6_amd64.deb md5: Value of 'md5' differs for gatb-core_1.4.2+dfsg-6_amd64.deb md5: Size differs for gatb-core_1.4.2+dfsg-6_amd64.deb md5: Value of 'md5' differs for libgatbcore-dev_1.4.2+dfsg-6_amd64.deb md5: Size differs for libgatbcore-dev_1.4.2+dfsg-6_amd64.deb md5: Value of 'md5' differs for libgatbcore3-dbgsym_1.4.2+dfsg-6_amd64.deb md5: Size differs for libgatbcore3-dbgsym_1.4.2+dfsg-6_amd64.deb md5: Value of 'md5' differs for libgatbcore3_1.4.2+dfsg-6_amd64.deb md5: Size differs for libgatbcore3_1.4.2+dfsg-6_amd64.deb sha1: Value of 'sha1' differs for gatb-core-dbgsym_1.4.2+dfsg-6_amd64.deb sha1: Size differs for gatb-core-dbgsym_1.4.2+dfsg-6_amd64.deb sha1: Value of 'sha1' differs for gatb-core_1.4.2+dfsg-6_amd64.deb sha1: Size differs for gatb-core_1.4.2+dfsg-6_amd64.deb sha1: Value of 'sha1' differs for libgatbcore-dev_1.4.2+dfsg-6_amd64.deb sha1: Size differs for libgatbcore-dev_1.4.2+dfsg-6_amd64.deb sha1: Value of 'sha1' differs for libgatbcore3-dbgsym_1.4.2+dfsg-6_amd64.deb sha1: Size differs for libgatbcore3-dbgsym_1.4.2+dfsg-6_amd64.deb sha1: Value of 'sha1' differs for libgatbcore3_1.4.2+dfsg-6_amd64.deb sha1: Size differs for libgatbcore3_1.4.2+dfsg-6_amd64.deb sha256: Value of 'sha256' differs for gatb-core-dbgsym_1.4.2+dfsg-6_amd64.deb sha256: Size differs for gatb-core-dbgsym_1.4.2+dfsg-6_amd64.deb sha256: Value of 'sha256' differs for gatb-core_1.4.2+dfsg-6_amd64.deb sha256: Size differs for gatb-core_1.4.2+dfsg-6_amd64.deb sha256: Value of 'sha256' differs for libgatbcore-dev_1.4.2+dfsg-6_amd64.deb sha256: Size differs for libgatbcore-dev_1.4.2+dfsg-6_amd64.deb sha256: Value of 'sha256' differs for libgatbcore3-dbgsym_1.4.2+dfsg-6_amd64.deb sha256: Size differs for libgatbcore3-dbgsym_1.4.2+dfsg-6_amd64.deb sha256: Value of 'sha256' differs for libgatbcore3_1.4.2+dfsg-6_amd64.deb sha256: Size differs for libgatbcore3_1.4.2+dfsg-6_amd64.deb Checksums: FAIL Cannot generate diffoscope for gatb-core-dbgsym_1.4.2+dfsg-6_amd64.deb: Cannot find URL: http://snapshot.notset.fr/mr/file/f5d068daf491a5568856bcac155d4baa5a5b1cfd3f78f813ca14dfd4606c3e7e/download diffoscope run passed diffoscope run passed Cannot generate diffoscope for libgatbcore3-dbgsym_1.4.2+dfsg-6_amd64.deb: Cannot find URL: http://snapshot.notset.fr/mr/file/8d1f688caaf8f74af972603acdb754585b311d5de7824054bb883ce9e785c830/download diffoscope run passed