--- /tmp/freecontact-1.0.21-98ffibdqm/debian/libfreecontact-doc_1.0.21-9_all.deb +++ libfreecontact-doc_1.0.21-9_all.deb ├── file list │ @@ -1,3 +1,3 @@ │ -rw-r--r-- 0 0 0 4 2021-04-07 15:06:42.000000 debian-binary │ --rw-r--r-- 0 0 0 6212 2021-04-07 15:06:42.000000 control.tar.xz │ --rw-r--r-- 0 0 0 95424 2021-04-07 15:06:42.000000 data.tar.xz │ +-rw-r--r-- 0 0 0 6208 2021-04-07 15:06:42.000000 control.tar.xz │ +-rw-r--r-- 0 0 0 95308 2021-04-07 15:06:42.000000 data.tar.xz ├── control.tar.xz │ ├── control.tar │ │ ├── ./control │ │ │ @@ -1,13 +1,13 @@ │ │ │ Package: libfreecontact-doc │ │ │ Source: freecontact │ │ │ Version: 1.0.21-9 │ │ │ Architecture: all │ │ │ Maintainer: Debian Med Packaging Team │ │ │ -Installed-Size: 1268 │ │ │ +Installed-Size: 1266 │ │ │ Depends: libjs-jquery │ │ │ Section: doc │ │ │ Priority: optional │ │ │ Homepage: http://rostlab.org/ │ │ │ Description: documentation for libfreecontact │ │ │ FreeContact is a protein residue contact predictor optimized for speed. │ │ │ Its input is a multiple sequence alignment. FreeContact can function as an │ │ ├── ./md5sums │ │ │ ├── ./md5sums │ │ │ │┄ Files differ ├── data.tar.xz │ ├── data.tar │ │ ├── file list │ │ │ @@ -35,16 +35,16 @@ │ │ │ -rw-r--r-- 0 root (0) root (0) 676 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/classfreecontact_1_1icme__timeout__error.png │ │ │ -rw-r--r-- 0 root (0) root (0) 6160 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/classfreecontact_1_1pf__vector-members.html │ │ │ -rw-r--r-- 0 root (0) root (0) 16791 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/classfreecontact_1_1pf__vector.html │ │ │ -rw-r--r-- 0 root (0) root (0) 730 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/classfreecontact_1_1pf__vector.png │ │ │ -rw-r--r-- 0 root (0) root (0) 7818 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/classfreecontact_1_1predictor-members.html │ │ │ -rw-r--r-- 0 root (0) root (0) 39835 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/classfreecontact_1_1predictor.html │ │ │ -rw-r--r-- 0 root (0) root (0) 132 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/closed.png │ │ │ --rw-r--r-- 0 root (0) root (0) 38364 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/config_8h.html │ │ │ --rw-r--r-- 0 root (0) root (0) 22499 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/config_8h_source.html │ │ │ +-rw-r--r-- 0 root (0) root (0) 37442 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/config_8h.html │ │ │ +-rw-r--r-- 0 root (0) root (0) 22422 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/config_8h_source.html │ │ │ -rw-r--r-- 0 root (0) root (0) 746 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/doc.png │ │ │ -rw-r--r-- 0 root (0) root (0) 31428 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/doxygen.css │ │ │ -rw-r--r-- 0 root (0) root (0) 15382 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/doxygen.svg │ │ │ -rw-r--r-- 0 root (0) root (0) 4735 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/dynsections.js │ │ │ -rw-r--r-- 0 root (0) root (0) 4228 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/files.html │ │ │ -rw-r--r-- 0 root (0) root (0) 616 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/folderclosed.png │ │ │ -rw-r--r-- 0 root (0) root (0) 597 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/folderopen.png │ │ │ @@ -54,16 +54,16 @@ │ │ │ -rw-r--r-- 0 root (0) root (0) 68013 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/freecontact_8h_source.html │ │ │ -rw-r--r-- 0 root (0) root (0) 12930 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/functions.html │ │ │ -rw-r--r-- 0 root (0) root (0) 7336 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/functions_func.html │ │ │ -rw-r--r-- 0 root (0) root (0) 3564 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/functions_type.html │ │ │ -rw-r--r-- 0 root (0) root (0) 7903 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/functions_vars.html │ │ │ -rw-r--r-- 0 root (0) root (0) 6950 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/glassofast-real_8f90.html │ │ │ -rw-r--r-- 0 root (0) root (0) 29554 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/glassofast-real_8f90_source.html │ │ │ --rw-r--r-- 0 root (0) root (0) 8422 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/globals.html │ │ │ --rw-r--r-- 0 root (0) root (0) 7552 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/globals_defs.html │ │ │ +-rw-r--r-- 0 root (0) root (0) 8318 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/globals.html │ │ │ +-rw-r--r-- 0 root (0) root (0) 7448 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/globals_defs.html │ │ │ -rw-r--r-- 0 root (0) root (0) 3466 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/globals_func.html │ │ │ -rw-r--r-- 0 root (0) root (0) 2972 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/globals_type.html │ │ │ -rw-r--r-- 0 root (0) root (0) 8092 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/hierarchy.html │ │ │ -rw-r--r-- 0 root (0) root (0) 2967 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/index.html │ │ │ -rw-r--r-- 0 root (0) root (0) 3222 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/menu.js │ │ │ -rw-r--r-- 0 root (0) root (0) 4783 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/menudata.js │ │ │ -rw-r--r-- 0 root (0) root (0) 39933 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/namespacefreecontact.html │ │ │ @@ -96,27 +96,27 @@ │ │ │ -rw-r--r-- 0 root (0) root (0) 1445 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/all_4.html │ │ │ -rw-r--r-- 0 root (0) root (0) 169 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/all_4.js │ │ │ -rw-r--r-- 0 root (0) root (0) 1445 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/all_5.html │ │ │ -rw-r--r-- 0 root (0) root (0) 639 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/all_5.js │ │ │ -rw-r--r-- 0 root (0) root (0) 1445 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/all_6.html │ │ │ -rw-r--r-- 0 root (0) root (0) 763 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/all_6.js │ │ │ -rw-r--r-- 0 root (0) root (0) 1445 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/all_7.html │ │ │ --rw-r--r-- 0 root (0) root (0) 2970 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/all_7.js │ │ │ +-rw-r--r-- 0 root (0) root (0) 2867 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/all_7.js │ │ │ -rw-r--r-- 0 root (0) root (0) 1445 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/all_8.html │ │ │ -rw-r--r-- 0 root (0) root (0) 433 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/all_8.js │ │ │ -rw-r--r-- 0 root (0) root (0) 1445 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/all_9.html │ │ │ -rw-r--r-- 0 root (0) root (0) 143 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/all_9.js │ │ │ -rw-r--r-- 0 root (0) root (0) 1445 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/all_a.html │ │ │ -rw-r--r-- 0 root (0) root (0) 371 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/all_a.js │ │ │ -rw-r--r-- 0 root (0) root (0) 1445 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/all_b.html │ │ │ -rw-r--r-- 0 root (0) root (0) 268 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/all_b.js │ │ │ -rw-r--r-- 0 root (0) root (0) 1445 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/all_c.html │ │ │ -rw-r--r-- 0 root (0) root (0) 2566 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/all_c.js │ │ │ -rw-r--r-- 0 root (0) root (0) 1445 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/all_d.html │ │ │ --rw-r--r-- 0 root (0) root (0) 2716 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/all_d.js │ │ │ +-rw-r--r-- 0 root (0) root (0) 2715 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/all_d.js │ │ │ -rw-r--r-- 0 root (0) root (0) 1445 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/all_e.html │ │ │ -rw-r--r-- 0 root (0) root (0) 368 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/all_e.js │ │ │ -rw-r--r-- 0 root (0) root (0) 1445 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/all_f.html │ │ │ -rw-r--r-- 0 root (0) root (0) 1583 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/all_f.js │ │ │ -rw-r--r-- 0 root (0) root (0) 1449 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/classes_0.html │ │ │ -rw-r--r-- 0 root (0) root (0) 254 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/classes_0.js │ │ │ -rw-r--r-- 0 root (0) root (0) 1449 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/classes_1.html │ │ │ @@ -131,15 +131,15 @@ │ │ │ -rw-r--r-- 0 root (0) root (0) 303 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/classes_5.js │ │ │ -rw-r--r-- 0 root (0) root (0) 1284 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/close.svg │ │ │ -rw-r--r-- 0 root (0) root (0) 1449 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/defines_0.html │ │ │ -rw-r--r-- 0 root (0) root (0) 142 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/defines_0.js │ │ │ -rw-r--r-- 0 root (0) root (0) 1449 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/defines_1.html │ │ │ -rw-r--r-- 0 root (0) root (0) 138 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/defines_1.js │ │ │ -rw-r--r-- 0 root (0) root (0) 1449 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/defines_2.html │ │ │ --rw-r--r-- 0 root (0) root (0) 2996 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/defines_2.js │ │ │ +-rw-r--r-- 0 root (0) root (0) 2892 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/defines_2.js │ │ │ -rw-r--r-- 0 root (0) root (0) 1449 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/defines_3.html │ │ │ -rw-r--r-- 0 root (0) root (0) 374 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/defines_3.js │ │ │ -rw-r--r-- 0 root (0) root (0) 1449 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/defines_4.html │ │ │ -rw-r--r-- 0 root (0) root (0) 816 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/defines_4.js │ │ │ -rw-r--r-- 0 root (0) root (0) 1449 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/defines_5.html │ │ │ -rw-r--r-- 0 root (0) root (0) 132 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/defines_5.js │ │ │ -rw-r--r-- 0 root (0) root (0) 1449 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/search/defines_6.html │ │ │ @@ -228,15 +228,15 @@ │ │ │ -rw-r--r-- 0 root (0) root (0) 853 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/sync_off.png │ │ │ -rw-r--r-- 0 root (0) root (0) 845 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/sync_on.png │ │ │ -rw-r--r-- 0 root (0) root (0) 142 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/tab_a.png │ │ │ -rw-r--r-- 0 root (0) root (0) 169 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/tab_b.png │ │ │ -rw-r--r-- 0 root (0) root (0) 177 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/tab_h.png │ │ │ -rw-r--r-- 0 root (0) root (0) 184 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/tab_s.png │ │ │ -rw-r--r-- 0 root (0) root (0) 8700 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/html/tabs.css │ │ │ --rw-r--r-- 0 root (0) root (0) 47251 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/libfreecontact.tag │ │ │ +-rw-r--r-- 0 root (0) root (0) 47026 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-dev/libfreecontact.tag │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-doc/ │ │ │ -rw-r--r-- 0 root (0) root (0) 1435 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-doc/changelog.Debian.gz │ │ │ -rw-r--r-- 0 root (0) root (0) 2377 2013-09-28 07:59:19.000000 ./usr/share/doc/libfreecontact-doc/changelog.gz │ │ │ -rw-r--r-- 0 root (0) root (0) 1399 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-doc/copyright │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2021-04-07 15:06:42.000000 ./usr/share/doc/libfreecontact-doc/html/ │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2021-04-07 15:06:42.000000 ./usr/share/doc-base/ │ │ │ -rw-r--r-- 0 root (0) root (0) 584 2021-04-07 15:06:42.000000 ./usr/share/doc-base/libfreecontact │ │ ├── ./usr/share/doc/libfreecontact-dev/html/config_8h.html │ │ │ @@ -69,16 +69,14 @@ │ │ │ │ │ │
│ │ │ │ │ │

Go to the source code of this file.

│ │ │ │ │ │ │ │ │ - │ │ │ - │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ @@ -143,30 +141,14 @@ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │

│ │ │ Macros

#define HAVE_AVX
 
#define HAVE_BLAS   1
 
#define HAVE_BOOST
 
#define HAVE_BOOST_PROGRAM_OPTIONS
 
#define HAVE_DLFCN_H   1
 
#define STDC_HEADERS   1
 
#define VERSION   "1.0.21"
 
│ │ │

Macro Definition Documentation

│ │ │ - │ │ │ -

◆ HAVE_AVX

│ │ │ - │ │ │ -
│ │ │ -
│ │ │ - │ │ │ - │ │ │ - │ │ │ - │ │ │ -
#define HAVE_AVX
│ │ │ -
│ │ │ - │ │ │ -

Definition at line 15 of file config.h.

│ │ │ - │ │ │ -
│ │ │ -
│ │ │ │ │ │

◆ HAVE_BLAS

│ │ │ │ │ │
│ │ │
│ │ │ │ │ │ │ │ ├── ./usr/share/doc/libfreecontact-dev/html/config_8h_source.html │ │ │ @@ -76,15 +76,15 @@ │ │ │
8 /* Define if F77 and FC dummy `main' functions are identical. */
│ │ │
9 /* #undef FC_DUMMY_MAIN_EQ_F77 */
│ │ │
10 
│ │ │
11 /* Support Altivec instructions */
│ │ │
12 /* #undef HAVE_ALTIVEC */
│ │ │
13 
│ │ │
14 /* Support AVX (Advanced Vector Extensions) instructions */
│ │ │ -
15 #define HAVE_AVX
│ │ │ +
15 /* #undef HAVE_AVX */
│ │ │
16 
│ │ │
17 /* Define if you have a BLAS library. */
│ │ │
18 #define HAVE_BLAS 1
│ │ │
19 
│ │ │
20 /* define if the Boost library is available */
│ │ │
21 #define HAVE_BOOST
│ │ │
22 
│ │ ├── ./usr/share/doc/libfreecontact-dev/html/globals.html │ │ │ @@ -88,17 +88,14 @@ │ │ │
  • glassofast_() │ │ │ : freecontact.cpp │ │ │
  • │ │ │ │ │ │ │ │ │ │ │ │

    - h -

      │ │ │ -
    • HAVE_AVX │ │ │ -: config.h │ │ │ -
    • │ │ │
    • HAVE_BLAS │ │ │ : config.h │ │ │
    • │ │ │
    • HAVE_BOOST │ │ │ : config.h │ │ │
    • │ │ │
    • HAVE_BOOST_PROGRAM_OPTIONS │ │ ├── ./usr/share/doc/libfreecontact-dev/html/globals_defs.html │ │ │ @@ -75,17 +75,14 @@ │ │ │
    • CAN_VECW │ │ │ : freecontact.cpp │ │ │
    • │ │ │
    │ │ │ │ │ │ │ │ │

    - h -

      │ │ │ -
    • HAVE_AVX │ │ │ -: config.h │ │ │ -
    • │ │ │
    • HAVE_BLAS │ │ │ : config.h │ │ │
    • │ │ │
    • HAVE_BOOST │ │ │ : config.h │ │ │
    • │ │ │
    • HAVE_BOOST_PROGRAM_OPTIONS │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/all_10.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,10 +1,10 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['score_106', ['score', ['../structfreecontact_1_1contact__t.html#a9b852e178f7b28ac0aa156b658bdd023', 1, 'freecontact::contact_t']]], │ │ │ │ - ['seqcnt_107', ['seqcnt', ['../classfreecontact_1_1ali__t.html#a0d0fb8987dd3753403178d74c8ac5e04', 1, 'freecontact::ali_t']]], │ │ │ │ - ['sgetrf_5f_108', ['sgetrf_', ['../freecontact_8cpp.html#aeaee28c6fe6eed9f57e918dc31a17afb', 1, 'freecontact.cpp']]], │ │ │ │ - ['sgetri_5f_109', ['sgetri_', ['../freecontact_8cpp.html#a9808abd70f1d1b9b4040709d25636252', 1, 'freecontact.cpp']]], │ │ │ │ - ['shrink_5flambda_110', ['shrink_lambda', ['../structfreecontact_1_1parset__t.html#a537441daba9deb02f67f0beed007e0b2', 1, 'freecontact::parset_t']]], │ │ │ │ - ['simcnt_5ft_111', ['simcnt_t', ['../namespacefreecontact.html#a50e3585fadb19ab5b87e97560021df80', 1, 'freecontact']]], │ │ │ │ - ['spotrf_5f_112', ['spotrf_', ['../freecontact_8cpp.html#a47155893c27b3a0d2bea295ba06b2035', 1, 'freecontact.cpp']]], │ │ │ │ - ['stdc_5fheaders_113', ['STDC_HEADERS', ['../config_8h.html#a550e5c272cc3cf3814651721167dcd23', 1, 'config.h']]] │ │ │ │ + ['score_105', ['score', ['../structfreecontact_1_1contact__t.html#a9b852e178f7b28ac0aa156b658bdd023', 1, 'freecontact::contact_t']]], │ │ │ │ + ['seqcnt_106', ['seqcnt', ['../classfreecontact_1_1ali__t.html#a0d0fb8987dd3753403178d74c8ac5e04', 1, 'freecontact::ali_t']]], │ │ │ │ + ['sgetrf_5f_107', ['sgetrf_', ['../freecontact_8cpp.html#aeaee28c6fe6eed9f57e918dc31a17afb', 1, 'freecontact.cpp']]], │ │ │ │ + ['sgetri_5f_108', ['sgetri_', ['../freecontact_8cpp.html#a9808abd70f1d1b9b4040709d25636252', 1, 'freecontact.cpp']]], │ │ │ │ + ['shrink_5flambda_109', ['shrink_lambda', ['../structfreecontact_1_1parset__t.html#a537441daba9deb02f67f0beed007e0b2', 1, 'freecontact::parset_t']]], │ │ │ │ + ['simcnt_5ft_110', ['simcnt_t', ['../namespacefreecontact.html#a50e3585fadb19ab5b87e97560021df80', 1, 'freecontact']]], │ │ │ │ + ['spotrf_5f_111', ['spotrf_', ['../freecontact_8cpp.html#a47155893c27b3a0d2bea295ba06b2035', 1, 'freecontact.cpp']]], │ │ │ │ + ['stdc_5fheaders_112', ['STDC_HEADERS', ['../config_8h.html#a550e5c272cc3cf3814651721167dcd23', 1, 'config.h']]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/all_11.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,3 +1,3 @@ │ │ │ │ var searchData = [ │ │ │ │ - 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['_5ffill_5fpfi_210', ['_fill_pfi', ['../freecontact_8cpp.html#aaaf4e3fcae5b30304306e976c5d97007', 1, 'freecontact.cpp']]] │ │ │ │ + ['_5ffill_5fpfi_209', ['_fill_pfi', ['../freecontact_8cpp.html#aaaf4e3fcae5b30304306e976c5d97007', 1, 'freecontact.cpp']]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/defines_1.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,3 +1,3 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['can_5fvecw_211', ['CAN_VECW', ['../freecontact_8cpp.html#a2de2789904ae67b5ee548eab4411ce6c', 1, 'freecontact.cpp']]] │ │ │ │ + ['can_5fvecw_210', ['CAN_VECW', ['../freecontact_8cpp.html#a2de2789904ae67b5ee548eab4411ce6c', 1, 'freecontact.cpp']]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/defines_2.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,28 +1,27 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['have_5favx_212', ['HAVE_AVX', ['../config_8h.html#aa7e976f67cb76f04c38c346b91719182', 1, 'config.h']]], │ │ │ │ - ['have_5fblas_213', ['HAVE_BLAS', ['../config_8h.html#a55bac73840c244b1326a808edb8b2aac', 1, 'config.h']]], │ │ │ │ - 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['libfreec_5fapi_238', ['LIBFREEC_API', ['../freecontact_8h.html#afece13c25b7bc83b3748b39207b60099', 1, 'freecontact.h']]], │ │ │ │ - ['libfreec_5flocal_239', ['LIBFREEC_LOCAL', ['../freecontact_8h.html#afe36a0a88885a99b189d3c8766cbdc44', 1, 'freecontact.h']]], │ │ │ │ - ['lt_5fobjdir_240', ['LT_OBJDIR', ['../config_8h.html#ac2d5925d76379847dd9fc4747b061659', 1, 'config.h']]] │ │ │ │ + ['libfreec_5fapi_236', ['LIBFREEC_API', ['../freecontact_8h.html#afece13c25b7bc83b3748b39207b60099', 1, 'freecontact.h']]], │ │ │ │ + ['libfreec_5flocal_237', ['LIBFREEC_LOCAL', ['../freecontact_8h.html#afe36a0a88885a99b189d3c8766cbdc44', 1, 'freecontact.h']]], │ │ │ │ + ['lt_5fobjdir_238', ['LT_OBJDIR', ['../config_8h.html#ac2d5925d76379847dd9fc4747b061659', 1, 'config.h']]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/defines_4.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,9 +1,9 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['package_241', ['PACKAGE', ['../config_8h.html#aca8570fb706c81df371b7f9bc454ae03', 1, 'config.h']]], │ │ │ │ - ['package_5fbugreport_242', ['PACKAGE_BUGREPORT', ['../config_8h.html#a1d1d2d7f8d2f95b376954d649ab03233', 1, 'config.h']]], │ │ │ │ - ['package_5fname_243', ['PACKAGE_NAME', ['../config_8h.html#a1c0439e4355794c09b64274849eb0279', 1, 'config.h']]], │ │ │ │ - ['package_5fstring_244', ['PACKAGE_STRING', ['../config_8h.html#ac73e6f903c16eca7710f92e36e1c6fbf', 1, 'config.h']]], │ │ │ │ - ['package_5ftarname_245', ['PACKAGE_TARNAME', ['../config_8h.html#af415af6bfede0e8d5453708afe68651c', 1, 'config.h']]], │ │ │ │ - ['package_5furl_246', ['PACKAGE_URL', ['../config_8h.html#a5c93853116d5a50307b6744f147840aa', 1, 'config.h']]], │ │ │ │ - ['package_5fversion_247', ['PACKAGE_VERSION', ['../config_8h.html#aa326a05d5e30f9e9a4bb0b4469d5d0c0', 1, 'config.h']]] │ │ │ │ + ['package_239', ['PACKAGE', ['../config_8h.html#aca8570fb706c81df371b7f9bc454ae03', 1, 'config.h']]], │ │ │ │ + ['package_5fbugreport_240', ['PACKAGE_BUGREPORT', ['../config_8h.html#a1d1d2d7f8d2f95b376954d649ab03233', 1, 'config.h']]], │ │ │ │ + ['package_5fname_241', ['PACKAGE_NAME', ['../config_8h.html#a1c0439e4355794c09b64274849eb0279', 1, 'config.h']]], │ │ │ │ + ['package_5fstring_242', ['PACKAGE_STRING', ['../config_8h.html#ac73e6f903c16eca7710f92e36e1c6fbf', 1, 'config.h']]], │ │ │ │ + ['package_5ftarname_243', ['PACKAGE_TARNAME', ['../config_8h.html#af415af6bfede0e8d5453708afe68651c', 1, 'config.h']]], │ │ │ │ + ['package_5furl_244', ['PACKAGE_URL', ['../config_8h.html#a5c93853116d5a50307b6744f147840aa', 1, 'config.h']]], │ │ │ │ + ['package_5fversion_245', ['PACKAGE_VERSION', ['../config_8h.html#aa326a05d5e30f9e9a4bb0b4469d5d0c0', 1, 'config.h']]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/defines_5.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,3 +1,3 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['stdc_5fheaders_248', ['STDC_HEADERS', ['../config_8h.html#a550e5c272cc3cf3814651721167dcd23', 1, 'config.h']]] │ │ │ │ + ['stdc_5fheaders_246', ['STDC_HEADERS', ['../config_8h.html#a550e5c272cc3cf3814651721167dcd23', 1, 'config.h']]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/defines_6.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,3 +1,3 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['version_249', ['VERSION', ['../config_8h.html#a1c6d5de492ac61ad29aec7aa9a436bbf', 1, 'config.h']]] │ │ │ │ + ['version_247', ['VERSION', ['../config_8h.html#a1c6d5de492ac61ad29aec7aa9a436bbf', 1, 'config.h']]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/files_0.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,3 +1,3 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['config_2eh_133', ['config.h', ['../config_8h.html', 1, '']]] │ │ │ │ + ['config_2eh_132', ['config.h', ['../config_8h.html', 1, '']]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/files_1.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,4 +1,4 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['freecontact_2ecpp_134', ['freecontact.cpp', ['../freecontact_8cpp.html', 1, '']]], │ │ │ │ - ['freecontact_2eh_135', ['freecontact.h', ['../freecontact_8h.html', 1, '']]] │ │ │ │ + ['freecontact_2ecpp_133', ['freecontact.cpp', ['../freecontact_8cpp.html', 1, '']]], │ │ │ │ + ['freecontact_2eh_134', ['freecontact.h', ['../freecontact_8h.html', 1, '']]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/files_2.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,3 +1,3 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['glassofast_2dreal_2ef90_136', ['glassofast-real.f90', ['../glassofast-real_8f90.html', 1, '']]] │ │ │ │ + ['glassofast_2dreal_2ef90_135', ['glassofast-real.f90', ['../glassofast-real_8f90.html', 1, '']]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/functions_0.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,8 +1,8 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['_5fapc_137', ['_apc', ['../namespacefreecontact.html#a6f14b9da5756947a0dc5a3d4c45fca8d', 1, 'freecontact']]], │ │ │ │ - ['_5fcache_5fholds_5fnseq_138', ['_cache_holds_nseq', ['../namespacefreecontact.html#a871c5bc33c4f82512123cf0d9d4423cc', 1, 'freecontact']]], │ │ │ │ - ['_5fglasso_5ftimer_139', ['_glasso_timer', ['../classfreecontact_1_1__glasso__timer.html#a0d8108776465bafba7f9bb88cc576ba4', 1, 'freecontact::_glasso_timer']]], │ │ │ │ - ['_5fmm_5fsetzero_5fsi128_140', ['_mm_setzero_si128', ['../namespacefreecontact.html#a125fee0592d6510ee355c35c27871f29', 1, 'freecontact']]], │ │ │ │ - ['_5fraw_5fas_5fis_141', ['_raw_as_is', ['../namespacefreecontact.html#a88636cd377a3298d8c03749610d3450f', 1, 'freecontact']]], │ │ │ │ - ['_5fraw_5fscore_5fmatrix_142', ['_raw_score_matrix', ['../namespacefreecontact.html#a21bec792027a4e4fd3ee6193c3d0cf27', 1, 'freecontact']]] │ │ │ │ + ['_5fapc_136', ['_apc', ['../namespacefreecontact.html#a6f14b9da5756947a0dc5a3d4c45fca8d', 1, 'freecontact']]], │ │ │ │ + ['_5fcache_5fholds_5fnseq_137', ['_cache_holds_nseq', ['../namespacefreecontact.html#a871c5bc33c4f82512123cf0d9d4423cc', 1, 'freecontact']]], │ │ │ │ + ['_5fglasso_5ftimer_138', ['_glasso_timer', ['../classfreecontact_1_1__glasso__timer.html#a0d8108776465bafba7f9bb88cc576ba4', 1, 'freecontact::_glasso_timer']]], │ │ │ │ + ['_5fmm_5fsetzero_5fsi128_139', ['_mm_setzero_si128', ['../namespacefreecontact.html#a125fee0592d6510ee355c35c27871f29', 1, 'freecontact']]], │ │ │ │ + ['_5fraw_5fas_5fis_140', ['_raw_as_is', ['../namespacefreecontact.html#a88636cd377a3298d8c03749610d3450f', 1, 'freecontact']]], │ │ │ │ + ['_5fraw_5fscore_5fmatrix_141', ['_raw_score_matrix', ['../namespacefreecontact.html#a21bec792027a4e4fd3ee6193c3d0cf27', 1, 'freecontact']]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/functions_1.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,5 +1,5 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['af_5fvector_143', ['af_vector', ['../classfreecontact_1_1af__vector.html#a11e1c88ffea6ae5d7e0a2de7cb3e8e71', 1, 'freecontact::af_vector']]], │ │ │ │ - ['ali_5ft_144', ['ali_t', ['../classfreecontact_1_1ali__t.html#adc1faa96cac0d20260a49261ed2ded16', 1, 'freecontact::ali_t']]], │ │ │ │ - ['alilen_5ferror_145', ['alilen_error', ['../classfreecontact_1_1alilen__error.html#a6b4e74d7a727b4abb9ff6cd34d24d24e', 1, 'freecontact::alilen_error']]] │ │ │ │ + ['af_5fvector_142', ['af_vector', ['../classfreecontact_1_1af__vector.html#a11e1c88ffea6ae5d7e0a2de7cb3e8e71', 1, 'freecontact::af_vector']]], │ │ │ │ + ['ali_5ft_143', ['ali_t', ['../classfreecontact_1_1ali__t.html#adc1faa96cac0d20260a49261ed2ded16', 1, 'freecontact::ali_t']]], │ │ │ │ + ['alilen_5ferror_144', ['alilen_error', ['../classfreecontact_1_1alilen__error.html#a6b4e74d7a727b4abb9ff6cd34d24d24e', 1, 'freecontact::alilen_error']]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/functions_2.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,8 +1,8 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['contact_5ft_146', ['contact_t', ['../structfreecontact_1_1contact__t.html#a35542bdb254de23639b289ae4c5ac53a', 1, 'freecontact::contact_t']]], │ │ │ │ - ['cov_5fvector_147', ['cov_vector', ['../classfreecontact_1_1cov__vector.html#ada2626f30786a94d65d1af78b77c0482', 1, 'freecontact::cov_vector::cov_vector()'], │ │ │ │ + ['contact_5ft_145', ['contact_t', ['../structfreecontact_1_1contact__t.html#a35542bdb254de23639b289ae4c5ac53a', 1, 'freecontact::contact_t']]], │ │ │ │ + ['cov_5fvector_146', ['cov_vector', ['../classfreecontact_1_1cov__vector.html#ada2626f30786a94d65d1af78b77c0482', 1, 'freecontact::cov_vector::cov_vector()'], │ │ │ │ ['../classfreecontact_1_1cov__vector.html#ae0bb6fe1e54c0b62fbca796d8b2fcc72', 1, 'freecontact::cov_vector::cov_vector(uint16_t __alilen, uint8_t __q)'], │ │ │ │ ['../classfreecontact_1_1cov__vector.html#a81a7f761b2afe638892652cdb3cda854', 1, 'freecontact::cov_vector::cov_vector(uint16_t __alilen, uint8_t __q, _Tp __v)'] │ │ │ │ ]], │ │ │ │ - ['ct_5fvector_148', ['ct_vector', ['../classfreecontact_1_1ct__vector.html#ac93acc36c13b6d021ddcde389e4ec61a', 1, 'freecontact::ct_vector']]] │ │ │ │ + ['ct_5fvector_147', ['ct_vector', ['../classfreecontact_1_1ct__vector.html#ac93acc36c13b6d021ddcde389e4ec61a', 1, 'freecontact::ct_vector']]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/functions_3.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,3 +1,3 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['d2matrix_149', ['d2matrix', ['../classfreecontact_1_1d2matrix.html#aa8567419597744784da379a9820c12f4', 1, 'freecontact::d2matrix']]] │ │ │ │ + ['d2matrix_148', ['d2matrix', ['../classfreecontact_1_1d2matrix.html#aa8567419597744784da379a9820c12f4', 1, 'freecontact::d2matrix']]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/functions_4.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,5 +1,5 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['get_5fseq_5fweights_150', ['get_seq_weights', ['../classfreecontact_1_1predictor.html#aaa85bdee06a6d92bd64f24add6786f01', 1, 'freecontact::predictor']]], │ │ │ │ - ['glassofast_151', ['glassofast', ['../glassofast-real_8f90.html#aa244273e8077a11223dc40d0f01c7d2c', 1, 'glassofast-real.f90']]], │ │ │ │ - ['glassofast_5f_152', ['glassofast_', ['../freecontact_8cpp.html#a94039a2beb873605b7a20e5a7b95d9c5', 1, 'freecontact.cpp']]] │ │ │ │ + ['get_5fseq_5fweights_149', ['get_seq_weights', ['../classfreecontact_1_1predictor.html#aaa85bdee06a6d92bd64f24add6786f01', 1, 'freecontact::predictor']]], │ │ │ │ + ['glassofast_150', ['glassofast', ['../glassofast-real_8f90.html#aa244273e8077a11223dc40d0f01c7d2c', 1, 'glassofast-real.f90']]], │ │ │ │ + ['glassofast_5f_151', ['glassofast_', ['../freecontact_8cpp.html#a94039a2beb873605b7a20e5a7b95d9c5', 1, 'freecontact.cpp']]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/functions_5.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,3 +1,3 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['icme_5ftimeout_5ferror_153', ['icme_timeout_error', ['../classfreecontact_1_1icme__timeout__error.html#a172287e4e0390a05642e954f000f18ec', 1, 'freecontact::icme_timeout_error']]] │ │ │ │ + ['icme_5ftimeout_5ferror_152', ['icme_timeout_error', ['../classfreecontact_1_1icme__timeout__error.html#a172287e4e0390a05642e954f000f18ec', 1, 'freecontact::icme_timeout_error']]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/functions_6.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,9 +1,9 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['operator_28_29_154', ['operator()', ['../classfreecontact_1_1ct__vector.html#afcb4a095dfc08a717ddc5a810f32a375', 1, 'freecontact::ct_vector::operator()()'], │ │ │ │ + ['operator_28_29_153', ['operator()', ['../classfreecontact_1_1ct__vector.html#afcb4a095dfc08a717ddc5a810f32a375', 1, 'freecontact::ct_vector::operator()()'], │ │ │ │ ['../classfreecontact_1_1ali__t.html#a30209bf0d36ab06561642afaab8e0824', 1, 'freecontact::ali_t::operator()(uint32_t __k, uint16_t __ai) const'], │ │ │ │ ['../classfreecontact_1_1ali__t.html#a315ec682e10eedad226740129d26e22c', 1, 'freecontact::ali_t::operator()(uint32_t __k, uint16_t __ai)'], │ │ │ │ ['../classfreecontact_1_1d2matrix.html#a7432d39c8f7c295a120898da2040420e', 1, 'freecontact::d2matrix::operator()(_Tri __r, _Tci __c) const'], │ │ │ │ ['../classfreecontact_1_1d2matrix.html#a2413ac1941e9466e0b2064f1aea01cc9', 1, 'freecontact::d2matrix::operator()(_Tri __r, _Tci __c)'], │ │ │ │ ['../classfreecontact_1_1__rawscore__calc__t.html#add939e90702bfef4ffafbf0146cc2c6e', 1, 'freecontact::_rawscore_calc_t::operator()()'], │ │ │ │ ['../classfreecontact_1_1cov__vector.html#a764665858ff8514c5720928e651201b8', 1, 'freecontact::cov_vector::operator()(uint16_t __i, uint16_t __j, uint8_t __ai, uint8_t __aj) const'], │ │ │ │ ['../classfreecontact_1_1cov__vector.html#a9be3a2b672ad4b9f00a135fa1e807e6c', 1, 'freecontact::cov_vector::operator()(uint16_t __i, uint16_t __j, uint8_t __ai, uint8_t __aj)'], │ │ │ │ @@ -11,10 +11,10 @@ │ │ │ │ ['../classfreecontact_1_1cov__vector.html#a04b42f3302b9ba7bd2dc31f567b18fd4', 1, 'freecontact::cov_vector::operator()(size_t __row, size_t __col)'], │ │ │ │ ['../classfreecontact_1_1pf__vector.html#afd9d46ad358aa30bb5b1d1257d05fbce', 1, 'freecontact::pf_vector::operator()(uint16_t __i, uint16_t __j, uint8_t __ai, uint8_t __aj) const'], │ │ │ │ ['../classfreecontact_1_1pf__vector.html#a9cf57da7303fa67651da592fda7496ae', 1, 'freecontact::pf_vector::operator()(uint16_t __i, uint16_t __j, uint8_t __ai, uint8_t __aj)'], │ │ │ │ ['../classfreecontact_1_1af__vector.html#a0618c553a9840735720806238a462e07', 1, 'freecontact::af_vector::operator()(uint16_t __i, uint8_t __ai) const'], │ │ │ │ ['../classfreecontact_1_1af__vector.html#a9ffc3eef6f5a4c953902e0986d8f5c6b', 1, 'freecontact::af_vector::operator()(uint16_t __i, uint8_t __ai)'], │ │ │ │ ['../classfreecontact_1_1ct__vector.html#adad7e9aee9d11e13a29a6478cf8c4896', 1, 'freecontact::ct_vector::operator()()'] │ │ │ │ ]], │ │ │ │ - ['operator_3c_155', ['operator<', ['../structfreecontact_1_1contact__t.html#a4fed9ae3171e56db626848425e3ff9e7', 1, 'freecontact::contact_t']]], │ │ │ │ - ['operator_3e_156', ['operator>', ['../structfreecontact_1_1contact__t.html#ac829d4edc18c6f71bdadbd7b91136764', 1, 'freecontact::contact_t']]] │ │ │ │ + ['operator_3c_154', ['operator<', ['../structfreecontact_1_1contact__t.html#a4fed9ae3171e56db626848425e3ff9e7', 1, 'freecontact::contact_t']]], │ │ │ │ + ['operator_3e_155', ['operator>', ['../structfreecontact_1_1contact__t.html#ac829d4edc18c6f71bdadbd7b91136764', 1, 'freecontact::contact_t']]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/functions_7.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,13 +1,13 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['parset_5ft_157', ['parset_t', ['../structfreecontact_1_1parset__t.html#acb40904ea9efb8180523bf7ba7ccf137', 1, 'freecontact::parset_t']]], │ │ │ │ - ['pf_5fvector_158', ['pf_vector', ['../classfreecontact_1_1pf__vector.html#a9c81f0993ff41ad49471a766e449289a', 1, 'freecontact::pf_vector::pf_vector()'], │ │ │ │ + ['parset_5ft_156', ['parset_t', ['../structfreecontact_1_1parset__t.html#acb40904ea9efb8180523bf7ba7ccf137', 1, 'freecontact::parset_t']]], │ │ │ │ + ['pf_5fvector_157', ['pf_vector', ['../classfreecontact_1_1pf__vector.html#a9c81f0993ff41ad49471a766e449289a', 1, 'freecontact::pf_vector::pf_vector()'], │ │ │ │ ['../classfreecontact_1_1pf__vector.html#aaf6a3bc0e85b225e8f5823815e1cd848', 1, 'freecontact::pf_vector::pf_vector(uint16_t __alilen, uint8_t __q, _Tp __v)'] │ │ │ │ ]], │ │ │ │ - ['predictor_159', ['predictor', ['../classfreecontact_1_1predictor.html#a5b3acba7459ea63588430c640d29711b', 1, 'freecontact::predictor']]], │ │ │ │ - ['ps_5fevfold_160', ['ps_evfold', ['../namespacefreecontact.html#a7829e364e73633e52a50432336bb073e', 1, 'freecontact']]], │ │ │ │ - ['ps_5fpsicov_161', ['ps_psicov', ['../namespacefreecontact.html#aa04798faaad9cccc574dff97c2936ce2', 1, 'freecontact']]], │ │ │ │ - ['ps_5fpsicov_5fsd_162', ['ps_psicov_sd', ['../namespacefreecontact.html#a1ec93d0398ea325d48721441da5e0daa', 1, 'freecontact']]], │ │ │ │ - ['push_163', ['push', ['../classfreecontact_1_1ali__t.html#a27bbedfd1bbfca4e0c5653a0a2c2a8ca', 1, 'freecontact::ali_t::push(const std::vector< uint8_t > &__al)'], │ │ │ │ + ['predictor_158', ['predictor', ['../classfreecontact_1_1predictor.html#a5b3acba7459ea63588430c640d29711b', 1, 'freecontact::predictor']]], │ │ │ │ + ['ps_5fevfold_159', ['ps_evfold', ['../namespacefreecontact.html#a7829e364e73633e52a50432336bb073e', 1, 'freecontact']]], │ │ │ │ + ['ps_5fpsicov_160', ['ps_psicov', ['../namespacefreecontact.html#aa04798faaad9cccc574dff97c2936ce2', 1, 'freecontact']]], │ │ │ │ + ['ps_5fpsicov_5fsd_161', ['ps_psicov_sd', ['../namespacefreecontact.html#a1ec93d0398ea325d48721441da5e0daa', 1, 'freecontact']]], │ │ │ │ + ['push_162', ['push', ['../classfreecontact_1_1ali__t.html#a27bbedfd1bbfca4e0c5653a0a2c2a8ca', 1, 'freecontact::ali_t::push(const std::vector< uint8_t > &__al)'], │ │ │ │ ['../classfreecontact_1_1ali__t.html#afff7e21dde8393904276ebebd0f77fc3', 1, 'freecontact::ali_t::push(const std::string &__l)'] │ │ │ │ ]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/functions_8.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,7 +1,7 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['read_5fa_5fseq_164', ['read_a_seq', ['../classfreecontact_1_1ali__t.html#a6097172a49684ece700b492478ce208e', 1, 'freecontact::ali_t']]], │ │ │ │ - ['run_165', ['run', ['../classfreecontact_1_1predictor.html#af15b96aaec6461bfc3e1bdcc9e917a4c', 1, 'freecontact::predictor::run(const ali_t &__ali, const freq_vec_t &__aliw, const double __wtot, double __density, double __gapth, uint16_t __mincontsep, double __pseudocnt, double __pscnt_weight, bool __estimate_ivcov, double __shrink_lambda, bool __cov20, bool __apply_gapth, double __rho, int __num_threads=0, time_t __icme_timeout=1800, time_res_t *__timing=NULL)'], │ │ │ │ + ['read_5fa_5fseq_163', ['read_a_seq', ['../classfreecontact_1_1ali__t.html#a6097172a49684ece700b492478ce208e', 1, 'freecontact::ali_t']]], │ │ │ │ + ['run_164', ['run', ['../classfreecontact_1_1predictor.html#af15b96aaec6461bfc3e1bdcc9e917a4c', 1, 'freecontact::predictor::run(const ali_t &__ali, const freq_vec_t &__aliw, const double __wtot, double __density, double __gapth, uint16_t __mincontsep, double __pseudocnt, double __pscnt_weight, bool __estimate_ivcov, double __shrink_lambda, bool __cov20, bool __apply_gapth, double __rho, int __num_threads=0, time_t __icme_timeout=1800, time_res_t *__timing=NULL)'], │ │ │ │ ['../classfreecontact_1_1predictor.html#a7c41fd33d30f661746becc5c2acf6156', 1, 'freecontact::predictor::run(const ali_t &__ali, double __clustpc, double __density, double __gapth, uint16_t __mincontsep, double __pseudocnt, double __pscnt_weight, bool __estimate_ivcov, double __shrink_lambda, bool __cov20, bool __apply_gapth, double __rho, bool __veczw=true, int __num_threads=0, time_t __icme_timeout=1800, time_res_t *__timing=NULL)'], │ │ │ │ ['../classfreecontact_1_1predictor.html#a536df577952ccdb8636532e926152ea8', 1, 'freecontact::predictor::run(const ali_t &__ali, const parset_t &__parset, bool __veczw=true, int __num_threads=0, time_t __icme_timeout=1800, time_res_t *__timing=NULL)'] │ │ │ │ ]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/functions_9.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,5 +1,5 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['sgetrf_5f_166', ['sgetrf_', ['../freecontact_8cpp.html#aeaee28c6fe6eed9f57e918dc31a17afb', 1, 'freecontact.cpp']]], │ │ │ │ - ['sgetri_5f_167', ['sgetri_', ['../freecontact_8cpp.html#a9808abd70f1d1b9b4040709d25636252', 1, 'freecontact.cpp']]], │ │ │ │ - ['spotrf_5f_168', ['spotrf_', ['../freecontact_8cpp.html#a47155893c27b3a0d2bea295ba06b2035', 1, 'freecontact.cpp']]] │ │ │ │ + ['sgetrf_5f_165', ['sgetrf_', ['../freecontact_8cpp.html#aeaee28c6fe6eed9f57e918dc31a17afb', 1, 'freecontact.cpp']]], │ │ │ │ + ['sgetri_5f_166', ['sgetri_', ['../freecontact_8cpp.html#a9808abd70f1d1b9b4040709d25636252', 1, 'freecontact.cpp']]], │ │ │ │ + ['spotrf_5f_167', ['spotrf_', ['../freecontact_8cpp.html#a47155893c27b3a0d2bea295ba06b2035', 1, 'freecontact.cpp']]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/functions_a.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,5 +1,5 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['_7e_5fglasso_5ftimer_169', ['~_glasso_timer', ['../classfreecontact_1_1__glasso__timer.html#abeb1c8385bbe5b6b92787c2de3bd1a7b', 1, 'freecontact::_glasso_timer']]], │ │ │ │ - ['_7eali_5ft_170', ['~ali_t', ['../classfreecontact_1_1ali__t.html#a48db3e4c88df4d8ab9404b10a6962942', 1, 'freecontact::ali_t']]], │ │ │ │ - ['_7epredictor_171', ['~predictor', ['../classfreecontact_1_1predictor.html#a2bad7f3d97cb9f9acd44758240086646', 1, 'freecontact::predictor']]] │ │ │ │ + ['_7e_5fglasso_5ftimer_168', ['~_glasso_timer', ['../classfreecontact_1_1__glasso__timer.html#abeb1c8385bbe5b6b92787c2de3bd1a7b', 1, 'freecontact::_glasso_timer']]], │ │ │ │ + ['_7eali_5ft_169', ['~ali_t', ['../classfreecontact_1_1ali__t.html#a48db3e4c88df4d8ab9404b10a6962942', 1, 'freecontact::ali_t']]], │ │ │ │ + ['_7epredictor_170', ['~predictor', ['../classfreecontact_1_1predictor.html#a2bad7f3d97cb9f9acd44758240086646', 1, 'freecontact::predictor']]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/namespaces_0.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,3 +1,3 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['freecontact_132', ['freecontact', ['../namespacefreecontact.html', 1, '']]] │ │ │ │ + ['freecontact_131', ['freecontact', ['../namespacefreecontact.html', 1, '']]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/typedefs_0.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,3 +1,3 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['_5f_5fattribute_5f_5f_200', ['__attribute__', ['../namespacefreecontact.html#a5d52092b9ce46fe5b3052637fed9fa02', 1, 'freecontact']]] │ │ │ │ + ['_5f_5fattribute_5f_5f_199', ['__attribute__', ['../namespacefreecontact.html#a5d52092b9ce46fe5b3052637fed9fa02', 1, 'freecontact']]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/typedefs_1.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,4 +1,4 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['cont_5fres_5ft_201', ['cont_res_t', ['../classfreecontact_1_1predictor.html#a0a75e0272008e4e405e49dc82831e3e2', 1, 'freecontact::predictor']]], │ │ │ │ - ['cov_5ffp_5ft_202', ['cov_fp_t', ['../namespacefreecontact.html#ab3fcbb8eace26400143602de7a52b250', 1, 'freecontact']]] │ │ │ │ + ['cont_5fres_5ft_200', ['cont_res_t', ['../classfreecontact_1_1predictor.html#a0a75e0272008e4e405e49dc82831e3e2', 1, 'freecontact::predictor']]], │ │ │ │ + ['cov_5ffp_5ft_201', ['cov_fp_t', ['../namespacefreecontact.html#ab3fcbb8eace26400143602de7a52b250', 1, 'freecontact']]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/typedefs_2.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,5 +1,5 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['fp_5ft_203', ['fp_t', ['../namespacefreecontact.html#a1509da532ff5eb86ac994aadb82819d7', 1, 'freecontact']]], │ │ │ │ - ['freq_5ft_204', ['freq_t', ['../classfreecontact_1_1predictor.html#ae272f45e95c1d1ccd58d17ca137f3da3', 1, 'freecontact::predictor']]], │ │ │ │ - ['freq_5fvec_5ft_205', ['freq_vec_t', ['../classfreecontact_1_1predictor.html#ad9419230887212ba0b77e97592df1f10', 1, 'freecontact::predictor']]] │ │ │ │ + ['fp_5ft_202', ['fp_t', ['../namespacefreecontact.html#a1509da532ff5eb86ac994aadb82819d7', 1, 'freecontact']]], │ │ │ │ + ['freq_5ft_203', ['freq_t', ['../classfreecontact_1_1predictor.html#ae272f45e95c1d1ccd58d17ca137f3da3', 1, 'freecontact::predictor']]], │ │ │ │ + ['freq_5fvec_5ft_204', ['freq_vec_t', ['../classfreecontact_1_1predictor.html#ad9419230887212ba0b77e97592df1f10', 1, 'freecontact::predictor']]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/typedefs_3.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,3 +1,3 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['g_5ffp_5ft_206', ['g_fp_t', ['../freecontact_8cpp.html#ad7a2b4ac8fe1e98449202b128fd3025a', 1, 'freecontact.cpp']]] │ │ │ │ + ['g_5ffp_5ft_205', ['g_fp_t', ['../freecontact_8cpp.html#ad7a2b4ac8fe1e98449202b128fd3025a', 1, 'freecontact.cpp']]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/typedefs_4.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,3 +1,3 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['pairfreq_5ft_207', ['pairfreq_t', ['../classfreecontact_1_1predictor.html#a5054b4f980d5bd2b7d83404bb7c18e0a', 1, 'freecontact::predictor']]] │ │ │ │ + ['pairfreq_5ft_206', ['pairfreq_t', ['../classfreecontact_1_1predictor.html#a5054b4f980d5bd2b7d83404bb7c18e0a', 1, 'freecontact::predictor']]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/typedefs_5.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,3 +1,3 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['simcnt_5ft_208', ['simcnt_t', ['../namespacefreecontact.html#a50e3585fadb19ab5b87e97560021df80', 1, 'freecontact']]] │ │ │ │ + ['simcnt_5ft_207', ['simcnt_t', ['../namespacefreecontact.html#a50e3585fadb19ab5b87e97560021df80', 1, 'freecontact']]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/typedefs_6.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,3 +1,3 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['time_5fres_5ft_209', ['time_res_t', ['../classfreecontact_1_1predictor.html#a1d8a9bb6c5e1f99f2017a67d27fb7ff6', 1, 'freecontact::predictor']]] │ │ │ │ + ['time_5fres_5ft_208', ['time_res_t', ['../classfreecontact_1_1predictor.html#a1d8a9bb6c5e1f99f2017a67d27fb7ff6', 1, 'freecontact::predictor']]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/variables_0.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,13 +1,13 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['aamap_172', ['aamap', ['../namespacefreecontact.html#ac2f5df04647861769de567ed36636abc', 1, 'freecontact']]], │ │ │ │ - ['aamap_5fgapidx_173', ['aamap_gapidx', ['../namespacefreecontact.html#a3eda07fc84a407b262052bc2990c1e17', 1, 'freecontact']]], │ │ │ │ - ['alilen_174', ['alilen', ['../classfreecontact_1_1ct__vector.html#a3a085bd6ca05321e6ce99f6a6bdd0776', 1, 'freecontact::ct_vector::alilen()'], │ │ │ │ + ['aamap_171', ['aamap', ['../namespacefreecontact.html#ac2f5df04647861769de567ed36636abc', 1, 'freecontact']]], │ │ │ │ + ['aamap_5fgapidx_172', ['aamap_gapidx', ['../namespacefreecontact.html#a3eda07fc84a407b262052bc2990c1e17', 1, 'freecontact']]], │ │ │ │ + ['alilen_173', ['alilen', ['../classfreecontact_1_1ct__vector.html#a3a085bd6ca05321e6ce99f6a6bdd0776', 1, 'freecontact::ct_vector::alilen()'], │ │ │ │ ['../classfreecontact_1_1af__vector.html#a66b3dd779a2f5ef53ec28fbd6ef81d4f', 1, 'freecontact::af_vector::alilen()'], │ │ │ │ ['../classfreecontact_1_1pf__vector.html#ac9e54bc4758580d3e9d19713a7122e19', 1, 'freecontact::pf_vector::alilen()'], │ │ │ │ ['../classfreecontact_1_1cov__vector.html#a8c931ced2da5532682eada559d15f102', 1, 'freecontact::cov_vector::alilen()'], │ │ │ │ ['../classfreecontact_1_1ali__t.html#a2341c9fb8d57e95a2ce89b9704d76386', 1, 'freecontact::ali_t::alilen()'] │ │ │ │ ]], │ │ │ │ - ['alilen16_175', ['alilen16', ['../classfreecontact_1_1ali__t.html#a9645bb267ec8c7fdec0a49d5001d02c2', 1, 'freecontact::ali_t']]], │ │ │ │ - ['alilenpad_176', ['alilenpad', ['../classfreecontact_1_1ali__t.html#a99f3fdaa31e1b6675641d3444d2af1ca', 1, 'freecontact::ali_t']]], │ │ │ │ - ['apply_5fgapth_177', ['apply_gapth', ['../structfreecontact_1_1parset__t.html#aa5dc46e03834a38dc6ec5e4eceb99ee9', 1, 'freecontact::parset_t']]] │ │ │ │ + ['alilen16_174', ['alilen16', ['../classfreecontact_1_1ali__t.html#a9645bb267ec8c7fdec0a49d5001d02c2', 1, 'freecontact::ali_t']]], │ │ │ │ + ['alilenpad_175', ['alilenpad', ['../classfreecontact_1_1ali__t.html#a99f3fdaa31e1b6675641d3444d2af1ca', 1, 'freecontact::ali_t']]], │ │ │ │ + ['apply_5fgapth_176', ['apply_gapth', ['../structfreecontact_1_1parset__t.html#aa5dc46e03834a38dc6ec5e4eceb99ee9', 1, 'freecontact::parset_t']]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/variables_1.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,5 +1,5 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['clustpc_178', ['clustpc', ['../structfreecontact_1_1parset__t.html#a7500d01d2e2ca7d9f8bf9c3c0e66fd90', 1, 'freecontact::parset_t']]], │ │ │ │ - ['cols_179', ['cols', ['../classfreecontact_1_1d2matrix.html#a17836224c5079e294c977a24f063b5a6', 1, 'freecontact::d2matrix']]], │ │ │ │ - ['cov20_180', ['cov20', ['../structfreecontact_1_1parset__t.html#a45d6bcd68f2aab12d24c0ea847919745', 1, 'freecontact::parset_t']]] │ │ │ │ + ['clustpc_177', ['clustpc', ['../structfreecontact_1_1parset__t.html#a7500d01d2e2ca7d9f8bf9c3c0e66fd90', 1, 'freecontact::parset_t']]], │ │ │ │ + ['cols_178', ['cols', ['../classfreecontact_1_1d2matrix.html#a17836224c5079e294c977a24f063b5a6', 1, 'freecontact::d2matrix']]], │ │ │ │ + ['cov20_179', ['cov20', ['../structfreecontact_1_1parset__t.html#a45d6bcd68f2aab12d24c0ea847919745', 1, 'freecontact::parset_t']]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/variables_2.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,11 +1,11 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['d1_181', ['d1', ['../classfreecontact_1_1pf__vector.html#a3df7f7e334cc36d0244f63a763a46773', 1, 'freecontact::pf_vector::d1()'], │ │ │ │ + ['d1_180', ['d1', ['../classfreecontact_1_1pf__vector.html#a3df7f7e334cc36d0244f63a763a46773', 1, 'freecontact::pf_vector::d1()'], │ │ │ │ ['../classfreecontact_1_1cov__vector.html#a1ae0ac11c6a6045a2ab8041d7ccf3c51', 1, 'freecontact::cov_vector::d1()'] │ │ │ │ ]], │ │ │ │ - ['d2_182', ['d2', ['../classfreecontact_1_1pf__vector.html#ac2191e06d1d45bb952d769628d4ea0e3', 1, 'freecontact::pf_vector']]], │ │ │ │ - ['d3_183', ['d3', ['../classfreecontact_1_1pf__vector.html#a93bddad71a1a3eaccc67ae3f21dbb4a7', 1, 'freecontact::pf_vector']]], │ │ │ │ - ['dbg_184', ['dbg', ['../classfreecontact_1_1__glasso__timer.html#a5f31c0f817ed47307224a1a666f684d0', 1, 'freecontact::_glasso_timer::dbg()'], │ │ │ │ + ['d2_181', ['d2', ['../classfreecontact_1_1pf__vector.html#ac2191e06d1d45bb952d769628d4ea0e3', 1, 'freecontact::pf_vector']]], │ │ │ │ + ['d3_182', ['d3', ['../classfreecontact_1_1pf__vector.html#a93bddad71a1a3eaccc67ae3f21dbb4a7', 1, 'freecontact::pf_vector']]], │ │ │ │ + ['dbg_183', ['dbg', ['../classfreecontact_1_1__glasso__timer.html#a5f31c0f817ed47307224a1a666f684d0', 1, 'freecontact::_glasso_timer::dbg()'], │ │ │ │ ['../classfreecontact_1_1predictor.html#a11c0748eaab37bd6c7102f706ad8bf77', 1, 'freecontact::predictor::dbg()'] │ │ │ │ ]], │ │ │ │ - ['density_185', ['density', ['../structfreecontact_1_1parset__t.html#a67e002f68302fc4d28a1e0e7162b2bc7', 1, 'freecontact::parset_t']]] │ │ │ │ + ['density_184', ['density', ['../structfreecontact_1_1parset__t.html#a67e002f68302fc4d28a1e0e7162b2bc7', 1, 'freecontact::parset_t']]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/variables_3.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,3 +1,3 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['estimate_5fivcov_186', ['estimate_ivcov', ['../structfreecontact_1_1parset__t.html#a7af5f0424d951104c4c12f9c72e4218a', 1, 'freecontact::parset_t']]] │ │ │ │ + ['estimate_5fivcov_185', ['estimate_ivcov', ['../structfreecontact_1_1parset__t.html#a7af5f0424d951104c4c12f9c72e4218a', 1, 'freecontact::parset_t']]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/variables_4.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,3 +1,3 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['gapth_187', ['gapth', ['../structfreecontact_1_1parset__t.html#aa02be18253e40111daef91e6abfcb808', 1, 'freecontact::parset_t']]] │ │ │ │ + ['gapth_186', ['gapth', ['../structfreecontact_1_1parset__t.html#aa02be18253e40111daef91e6abfcb808', 1, 'freecontact::parset_t']]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/variables_5.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,3 +1,3 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['i_188', ['i', ['../structfreecontact_1_1contact__t.html#ac07d70260ddab5a213ea58f96c77b350', 1, 'freecontact::contact_t']]] │ │ │ │ + ['i_187', ['i', ['../structfreecontact_1_1contact__t.html#ac07d70260ddab5a213ea58f96c77b350', 1, 'freecontact::contact_t']]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/variables_6.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,3 +1,3 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['j_189', ['j', ['../structfreecontact_1_1contact__t.html#a64b84f0de8fa19b82b12f7e7e2e45259', 1, 'freecontact::contact_t']]] │ │ │ │ + ['j_188', ['j', ['../structfreecontact_1_1contact__t.html#a64b84f0de8fa19b82b12f7e7e2e45259', 1, 'freecontact::contact_t']]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/variables_7.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,4 +1,4 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['mapaa_190', ['mapaa', ['../namespacefreecontact.html#ad43b86635de3822859fb2497f75922b4', 1, 'freecontact']]], │ │ │ │ - ['mincontsep_191', ['mincontsep', ['../structfreecontact_1_1parset__t.html#a2b91e5a85776ca5d7db677420d6e0d56', 1, 'freecontact::parset_t']]] │ │ │ │ + ['mapaa_189', ['mapaa', ['../namespacefreecontact.html#ad43b86635de3822859fb2497f75922b4', 1, 'freecontact']]], │ │ │ │ + ['mincontsep_190', ['mincontsep', ['../structfreecontact_1_1parset__t.html#a2b91e5a85776ca5d7db677420d6e0d56', 1, 'freecontact::parset_t']]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/variables_8.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,4 +1,4 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['pscnt_5fweight_192', ['pscnt_weight', ['../structfreecontact_1_1parset__t.html#af405692fa0f49858b49c974663d024ed', 1, 'freecontact::parset_t']]], │ │ │ │ - ['pseudocnt_193', ['pseudocnt', ['../structfreecontact_1_1parset__t.html#accc7e5c8aab465a1be4e0748099d10b4', 1, 'freecontact::parset_t']]] │ │ │ │ + ['pscnt_5fweight_191', ['pscnt_weight', ['../structfreecontact_1_1parset__t.html#af405692fa0f49858b49c974663d024ed', 1, 'freecontact::parset_t']]], │ │ │ │ + ['pseudocnt_192', ['pseudocnt', ['../structfreecontact_1_1parset__t.html#accc7e5c8aab465a1be4e0748099d10b4', 1, 'freecontact::parset_t']]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/variables_9.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,6 +1,6 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['q_194', ['q', ['../classfreecontact_1_1af__vector.html#a8c127b8ad601de72b85dd5ecdbbb6e8a', 1, 'freecontact::af_vector::q()'], │ │ │ │ + ['q_193', ['q', ['../classfreecontact_1_1af__vector.html#a8c127b8ad601de72b85dd5ecdbbb6e8a', 1, 'freecontact::af_vector::q()'], │ │ │ │ ['../classfreecontact_1_1pf__vector.html#acdde71e2d4aa1a66ff789e4a6f3d4649', 1, 'freecontact::pf_vector::q()'], │ │ │ │ ['../classfreecontact_1_1cov__vector.html#af62bdb972b6e27d6a0e59841007b2b90', 1, 'freecontact::cov_vector::q()'] │ │ │ │ ]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/variables_a.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,4 +1,4 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['rho_195', ['rho', ['../structfreecontact_1_1parset__t.html#a72d8ec88d692d8863f8143ecab17a87a', 1, 'freecontact::parset_t']]], │ │ │ │ - ['rows_196', ['rows', ['../classfreecontact_1_1d2matrix.html#ab744e837264b13380ddb57f5106da6bd', 1, 'freecontact::d2matrix']]] │ │ │ │ + ['rho_194', ['rho', ['../structfreecontact_1_1parset__t.html#a72d8ec88d692d8863f8143ecab17a87a', 1, 'freecontact::parset_t']]], │ │ │ │ + ['rows_195', ['rows', ['../classfreecontact_1_1d2matrix.html#ab744e837264b13380ddb57f5106da6bd', 1, 'freecontact::d2matrix']]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/html/search/variables_b.js │ │ │ ├── js-beautify {} │ │ │ │ @@ -1,5 +1,5 @@ │ │ │ │ var searchData = [ │ │ │ │ - ['score_197', ['score', ['../structfreecontact_1_1contact__t.html#a9b852e178f7b28ac0aa156b658bdd023', 1, 'freecontact::contact_t']]], │ │ │ │ - ['seqcnt_198', ['seqcnt', ['../classfreecontact_1_1ali__t.html#a0d0fb8987dd3753403178d74c8ac5e04', 1, 'freecontact::ali_t']]], │ │ │ │ - ['shrink_5flambda_199', ['shrink_lambda', ['../structfreecontact_1_1parset__t.html#a537441daba9deb02f67f0beed007e0b2', 1, 'freecontact::parset_t']]] │ │ │ │ + ['score_196', ['score', ['../structfreecontact_1_1contact__t.html#a9b852e178f7b28ac0aa156b658bdd023', 1, 'freecontact::contact_t']]], │ │ │ │ + ['seqcnt_197', ['seqcnt', ['../classfreecontact_1_1ali__t.html#a0d0fb8987dd3753403178d74c8ac5e04', 1, 'freecontact::ali_t']]], │ │ │ │ + ['shrink_5flambda_198', ['shrink_lambda', ['../structfreecontact_1_1parset__t.html#a537441daba9deb02f67f0beed007e0b2', 1, 'freecontact::parset_t']]] │ │ │ │ ]; │ │ ├── ./usr/share/doc/libfreecontact-dev/libfreecontact.tag │ │ │ @@ -2,21 +2,14 @@ │ │ │ │ │ │ │ │ │ config.h │ │ │ /build/freecontact-emh25t/freecontact-1.0.21/lib/ │ │ │ config_8h.html │ │ │ │ │ │ #define │ │ │ - HAVE_AVX │ │ │ - config_8h.html │ │ │ - aa7e976f67cb76f04c38c346b91719182 │ │ │ - │ │ │ - │ │ │ - │ │ │ - #define │ │ │ HAVE_BLAS │ │ │ config_8h.html │ │ │ a55bac73840c244b1326a808edb8b2aac │ │ │ │ │ │ │ │ │ │ │ │ #define