Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/f/ffindex/ffindex_0.9.9.9-4_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/ffindex-0.9.9.9-44qkxoc9_/ffindex_0.9.9.9-4_amd64.buildinfo Get source package info: ffindex=0.9.9.9-4 Source URL: http://snapshot.notset.fr/mr/package/ffindex/0.9.9.9-4/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.118 autoconf=2.69-11.1 automake=1:1.16.3-1 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.48 bash=5.1~rc3-1 binutils=2.35.1-3 binutils-common=2.35.1-3 binutils-x86-64-linux-gnu=2.35.1-3 bsdextrautils=2.36.1-2 bsdutils=1:2.36.1-2 build-essential=12.8 bzip2=1.0.8-4 chrpath=0.16-2+b1 cmake=3.18.4-1 cmake-data=3.18.4-1 coreutils=8.32-4+b1 cpp=4:10.2.0-1 cpp-10=10.2.0-23 cpp-9=9.3.0-19 dash=0.5.11+git20200708+dd9ef66-2 debconf=1.5.74 debhelper=13.2.1 debianutils=4.11.2 dh-autoreconf=19 dh-strip-nondeterminism=1.9.0-1 diffutils=1:3.7-3 dpkg=1.20.5 dpkg-dev=1.20.5 dwz=0.13-5 file=1:5.39-3 findutils=4.7.0+git20201010-2 g++=4:10.2.0-1 g++-10=10.2.0-23 gcc=4:10.2.0-1 gcc-10=10.2.0-23 gcc-10-base=10.2.0-23 gcc-9=9.3.0-19 gcc-9-base=9.3.0-19 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 gfortran-9=9.3.0-19 grep=3.6-1 groff-base=1.22.4-5 gzip=1.10-2 help2man=1.47.16 hostname=3.23 ibverbs-providers=32.0-1+b1 init-system-helpers=1.59 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-8 libarchive-zip-perl=1.68-1 libarchive13=3.4.3-2 libasan5=9.3.0-19 libasan6=10.2.0-23 libatomic1=10.2.0-23 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-3.1 libaudit1=1:2.8.5-3.1 libbinutils=2.35.1-3 libblkid1=2.36.1-2 libbrotli1=1.0.9-2+b1 libbsd0=0.10.0-1 libbz2-1.0=1.0.8-4 libc-bin=2.31-5 libc-dev-bin=2.31-5 libc6=2.31-5 libc6-dev=2.31-5 libcap-ng0=0.7.9-2.2+b1 libcbor0=0.5.0+dfsg-2 libcc1-0=10.2.0-23 libcom-err2=1.45.6-1 libcroco3=0.6.13-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-3 libctf0=2.35.1-3 libcurl4=7.72.0-1 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.255 libdebhelper-perl=13.2.1 libdpkg-perl=1.20.5 libedit2=3.1-20191231-1 libelf1=0.182-1 libevent-2.1-7=2.1.12-stable-1 libevent-core-2.1-7=2.1.12-stable-1 libevent-dev=2.1.12-stable-1 libevent-extra-2.1-7=2.1.12-stable-1 libevent-openssl-2.1-7=2.1.12-stable-1 libevent-pthreads-2.1-7=2.1.12-stable-1 libexpat1=2.2.10-1 libfabric1=1.11.0-2 libffi7=3.3-5 libfido2-1=1.5.0-2 libfile-stripnondeterminism-perl=1.9.0-1 libgcc-10-dev=10.2.0-23 libgcc-9-dev=9.3.0-19 libgcc-s1=10.2.0-23 libgcrypt20=1.8.7-2 libgdbm-compat4=1.18.1-5.1 libgdbm6=1.18.1-5.1 libgfortran-9-dev=9.3.0-19 libgfortran5=10.2.0-23 libglib2.0-0=2.66.3-2 libgmp10=2:6.2.1+dfsg-1 libgnutls30=3.6.15-4 libgomp1=10.2.0-23 libgpg-error0=1.38-2 libgssapi-krb5-2=1.18.3-4 libhogweed6=3.6-2 libhwloc-dev=2.4.0+dfsg-2 libhwloc-plugins=2.4.0+dfsg-2 libhwloc15=2.4.0+dfsg-2 libibverbs-dev=32.0-1+b1 libibverbs1=32.0-1+b1 libicu67=67.1-4 libidn2-0=2.3.0-4 libisl23=0.23-1 libitm1=10.2.0-23 libjs-jquery=3.5.1+dfsg+~3.5.4-3 libjs-jquery-ui=1.12.1+dfsg-7 libjsoncpp1=1.7.4-3.1 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 libldap-2.4-2=2.4.56+dfsg-1 liblocale-gettext-perl=1.07-4+b1 liblsan0=10.2.0-23 libltdl-dev=2.4.6-14 libltdl7=2.4.6-14 liblz4-1=1.9.2-2 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmount1=2.36.1-2 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libncurses6=6.2+20201114-1 libncursesw6=6.2+20201114-1 libnettle8=3.6-2 libnghttp2-14=1.42.0-1 libnl-3-200=3.4.0-1+b1 libnl-3-dev=3.4.0-1+b1 libnl-route-3-200=3.4.0-1+b1 libnl-route-3-dev=3.4.0-1+b1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnuma-dev=2.0.12-1+b1 libnuma1=2.0.12-1+b1 libopenmpi-dev=4.0.5-7 libopenmpi3=4.0.5-7 libp11-kit0=0.23.21-2 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpciaccess0=0.16-1 libpcre2-8-0=10.34-7 libpcre3=2:8.39-13 libperl5.32=5.32.0-5 libpipeline1=1.5.3-1 libpmix-dev=3.2.1-1 libpmix2=3.2.1-1 libprocps8=2:3.3.16-5 libpsl5=0.21.0-1.1 libpsm-infinipath1=3.3+20.604758e7-6+b1 libpsm2-2=11.2.185-1 libquadmath0=10.2.0-23 librdmacm1=32.0-1+b1 librhash0=1.4.0-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg-2 libsasl2-modules-db=2.1.27+dfsg-2 libseccomp2=2.5.0-3 libselinux1=3.1-2+b1 libsemanage-common=3.1-1 libsemanage1=3.1-1+b1 libsepol1=3.1-1 libsigsegv2=2.12-2 libsmartcols1=2.36.1-2 libssh2-1=1.8.0-2.1 libssl1.1=1.1.1h-1 libstdc++-10-dev=10.2.0-23 libstdc++6=10.2.0-23 libsub-override-perl=0.09-2 libsystemd0=246.6-5 libtasn1-6=4.16.0-2 libtinfo6=6.2+20201114-1 libtirpc-common=1.2.6-3 libtirpc-dev=1.2.6-3 libtirpc3=1.2.6-3 libtool=2.4.6-14 libtsan0=10.2.0-23 libubsan1=10.2.0-23 libuchardet0=0.0.7-1 libucx0=1.9.0~rc1-2 libudev1=246.6-5 libunistring2=0.9.10-4 libuuid1=2.36.1-2 libuv1=1.40.0-1 libx11-6=2:1.6.12-1 libx11-data=2:1.6.12-1 libxau6=1:1.0.8-1+b2 libxcb1=1.14-2 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.3-1+b2 libxml2=2.9.10+dfsg-6.3 libxnvctrl0=450.80.02-1 libzstd1=1.4.5+dfsg-4 linux-libc-dev=5.9.11-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 ncurses-base=6.2+20201114-1 ncurses-bin=6.2+20201114-1 node-jquery=3.5.1+dfsg+~3.5.4-3 ocl-icd-libopencl1=2.2.13-1 openmpi-bin=4.0.5-7 openmpi-common=4.0.5-7 openssh-client=1:8.4p1-3 passwd=1:4.8.1-1 patch=2.7.6-6 perl=5.32.0-5 perl-base=5.32.0-5 perl-modules-5.32=5.32.0-5 pkg-config=0.29.2-1 po-debconf=1.0.21 procps=2:3.3.16-5 sed=4.7-1 sensible-utils=0.0.12+nmu1 sysvinit-utils=2.96-5 tar=1.32+dfsg-1 util-linux=2.36.1-2 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201208T030340Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20201202T205335Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d ffindex=0.9.9.9-4 && mkdir -p /build/ffindex-PAOiaS && dpkg-source --no-check -x /*.dsc /build/ffindex-PAOiaS/ffindex-0.9.9.9 && chown -R builduser:builduser /build/ffindex-PAOiaS" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/ffindex-PAOiaS/ffindex-0.9.9.9 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1607165579" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/ffindex-PAOiaS /tmp/ffindex-0.9.9.9-44qkxoc9_ bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20201202T205335Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.a9kaXdKYin as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.a9kaXdKYin Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-2). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20201202T205335Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20201202T205335Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1045 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4614 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-5) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201208T030340Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20201202T205335Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.a9kaXdKYin Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:2 http://snapshot.notset.fr/archive/debian/20201208T030340Z unstable InRelease [153 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20201202T205335Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20201208T030340Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20201208T030340Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20201208T030340Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20201208T030340Z unstable/main amd64 Packages [11.6 MB] Fetched 34.3 MB in 30s (1160 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.a9kaXdKYin I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d ffindex=0.9.9.9-4 && mkdir -p /build/ffindex-PAOiaS && dpkg-source --no-check -x /*.dsc /build/ffindex-PAOiaS/ffindex-0.9.9.9 && chown -R builduser:builduser /build/ffindex-PAOiaS"' exec /tmp/mmdebstrap.a9kaXdKYin Reading package lists... NOTICE: 'ffindex' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/ffindex.git Please use: git clone https://salsa.debian.org/med-team/ffindex.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 53.9 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main ffindex 0.9.9.9-4 (dsc) [2188 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main ffindex 0.9.9.9-4 (tar) [36.6 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main ffindex 0.9.9.9-4 (diff) [15.1 kB] Fetched 53.9 kB in 0s (705 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'ffindex_0.9.9.9-4.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting ffindex in /build/ffindex-PAOiaS/ffindex-0.9.9.9 dpkg-source: info: unpacking ffindex_0.9.9.9.orig.tar.gz dpkg-source: info: unpacking ffindex_0.9.9.9-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Makefile.patch dpkg-source: info: applying basename.patch dpkg-source: info: applying cross.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/ffindex-PAOiaS/ffindex-0.9.9.9 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1607165579" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.a9kaXdKYin dpkg-buildpackage: info: source package ffindex dpkg-buildpackage: info: source version 0.9.9.9-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean debian/rules:39: target 'ffindex_apply_mpi.1' given more than once in the same rule dh clean dh_auto_clean make -j4 clean make[1]: Entering directory '/build/ffindex-PAOiaS/ffindex-0.9.9.9' make -C src clean make[2]: Entering directory '/build/ffindex-PAOiaS/ffindex-0.9.9.9/src' rm -f ffindex_apply ffindex_from_fasta ffindex_get ffindex_build ffindex_modify ffindex_unpack ffindex_from_tsv ffindex_apply_mpi ffindex.o ffindex_posix_search.o ffutil.o libffindex.so libffindex.so.2.0.2 libffindex.a \ libffindex.so libffindex.so.2.0.2 libffindex.a \ ffindex_build.o ffindex_get.o ffindex_modify.o ffindex_from_fasta.o ffindex_apply_mpi.o \ ffindex_apply.o ffindex_from_tsv.o ffindex_unpack.o ffindex_posix_search.o ffindex_apply_mpi_spawn.o \ make[2]: Leaving directory '/build/ffindex-PAOiaS/ffindex-0.9.9.9/src' make[1]: Leaving directory '/build/ffindex-PAOiaS/ffindex-0.9.9.9' debian/rules override_dh_clean make[1]: Entering directory '/build/ffindex-PAOiaS/ffindex-0.9.9.9' debian/rules:39: target 'ffindex_apply_mpi.1' given more than once in the same rule rm -f ffindex_apply.1 ffindex_build.1 ffindex_from_fasta.1 ffindex_get.1 ffindex_modify.1 ffindex_unpack.1 ffindex_apply_mpi.1 ffindex_from_tsv.1 ffindex_apply_mpi.1 dh_clean make[1]: Leaving directory '/build/ffindex-PAOiaS/ffindex-0.9.9.9' debian/rules binary-arch debian/rules:39: target 'ffindex_apply_mpi.1' given more than once in the same rule dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/ffindex-PAOiaS/ffindex-0.9.9.9' make -C src all make[2]: Entering directory '/build/ffindex-PAOiaS/ffindex-0.9.9.9/src' cc -g -O2 -fdebug-prefix-map=/build/ffindex-PAOiaS/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ffindex.o ffindex.c cc -g -O2 -fdebug-prefix-map=/build/ffindex-PAOiaS/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ffindex_posix_search.o ffindex_posix_search.c cc -g -O2 -fdebug-prefix-map=/build/ffindex-PAOiaS/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ffutil.o ffutil.c cc -g -O2 -fdebug-prefix-map=/build/ffindex-PAOiaS/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ffindex_from_fasta.o ffindex_from_fasta.c cc -g -O2 -fdebug-prefix-map=/build/ffindex-PAOiaS/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ffindex_get.o ffindex_get.c ffindex.c: In function ‘ffindex_write’: ffindex.c:577:3: warning: ignoring return value of ‘ftruncate’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 577 | ftruncate(fileno(index_file), ftell(index_file)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -g -O2 -fdebug-prefix-map=/build/ffindex-PAOiaS/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ffindex_build.o ffindex_build.c cc -g -O2 -fdebug-prefix-map=/build/ffindex-PAOiaS/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ffindex_modify.o ffindex_modify.c In file included from /usr/include/string.h:495, from ffindex.c:26: In function ‘strncpy’, inlined from ‘ffindex_insert_dir’ at ffindex.c:234:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 255 bytes from a string of length 255 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -g -O2 -fdebug-prefix-map=/build/ffindex-PAOiaS/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ffindex_unpack.o ffindex_unpack.c cc -g -O2 -fdebug-prefix-map=/build/ffindex-PAOiaS/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ffindex_from_tsv.o ffindex_from_tsv.c cc -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/ffindex-PAOiaS/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_MPI -c ffindex_apply_mpi.c -o ffindex_apply_mpi.o cc -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,-soname,libffindex.so.2.0.2 -shared -o libffindex.so.2.0.2 ffindex.o ffindex_posix_search.o ffutil.o ar rcs libffindex.a ffindex.o ffindex_posix_search.o ffutil.o ln -sf libffindex.so.2.0.2 libffindex.so cc -g -O2 -fdebug-prefix-map=/build/ffindex-PAOiaS/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c ffindex_apply_mpi.c -o ffindex_apply.o cc -o ffindex_from_fasta ffindex_from_fasta.o -Wl,-z,relro -Wl,-z,now -L. -lffindex cc -o ffindex_get ffindex_get.o -Wl,-z,relro -Wl,-z,now -L. -lffindex cc -o ffindex_build ffindex_build.o -Wl,-z,relro -Wl,-z,now -L. -lffindex cc -o ffindex_modify ffindex_modify.o -Wl,-z,relro -Wl,-z,now -L. -lffindex cc -o ffindex_unpack ffindex_unpack.o -Wl,-z,relro -Wl,-z,now -L. -lffindex cc -o ffindex_from_tsv ffindex_from_tsv.o -Wl,-z,relro -Wl,-z,now -L. -lffindex cc -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/ffindex-PAOiaS/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_MPI -o ffindex_apply_mpi ffindex_apply_mpi.o -Wl,-z,relro -Wl,-z,now -L. -lffindex -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi cc -g -O2 -fdebug-prefix-map=/build/ffindex-PAOiaS/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -o ffindex_apply ffindex_apply.o -Wl,-z,relro -Wl,-z,now -L. -lffindex make[2]: Leaving directory '/build/ffindex-PAOiaS/ffindex-0.9.9.9/src' make[1]: Leaving directory '/build/ffindex-PAOiaS/ffindex-0.9.9.9' debian/rules override_dh_auto_test make[1]: Entering directory '/build/ffindex-PAOiaS/ffindex-0.9.9.9' debian/rules:39: target 'ffindex_apply_mpi.1' given more than once in the same rule dh_auto_test -- FFINDEX_MAX_INDEX_ENTRIES=20000 check make -j4 test FFINDEX_MAX_INDEX_ENTRIES=20000 check make[2]: Entering directory '/build/ffindex-PAOiaS/ffindex-0.9.9.9' make[2]: 'test' is up to date. make -C src check make[3]: Entering directory '/build/ffindex-PAOiaS/ffindex-0.9.9.9/src' rm -f /tmp/test.data /tmp/test.ffindex LD_LIBRARY_PATH=".:" ./ffindex_build -s /tmp/test.data /tmp/test.ffindex ../test/data ../test/data2 LD_LIBRARY_PATH=".:" ./ffindex_get /tmp/test.data /tmp/test.ffindex a b foo | tee /tmp/test.out a bb fooo fooo LD_LIBRARY_PATH=".:" ./ffindex_modify -u /tmp/test.ffindex b LD_LIBRARY_PATH=".:" ./ffindex_get /tmp/test.data /tmp/test.ffindex a b foo | tee /tmp/test-unlink.out ffindex_get.c:152 ffindex_get key not found in index: b: No such file or directory a fooo fooo LD_LIBRARY_PATH=".:" ./ffindex_build -a -s /tmp/test.data /tmp/test.ffindex ../test/testfile ======== compare results ========= diff /tmp/test.out test.should diff /tmp/test-unlink.out test-unlink.should ======== error handling ========== LD_LIBRARY_PATH=".:" ./ffindex_get /tmp/test.data /tmp/test.ffindex nonexistquery b foo || echo ffindex_get.c:152 ffindex_get key not found in index: nonexistquery: No such file or directory ffindex_get.c:152 ffindex_get key not found in index: b: No such file or directory fooo fooo LD_LIBRARY_PATH=".:" ./ffindex_get /nonexist/data /tmp/test.ffindex a foo || echo /nonexist/data: No such file or directory ffindex_get.c:80 ffindex_index_db_open failed: ./ffindex_get: Invalid argument LD_LIBRARY_PATH=".:" ./ffindex_get /tmp/test.data /nonexist/index a foo || echo /nonexist/index: No such file or directory ffindex_get.c:80 ffindex_index_db_open failed: ./ffindex_get: Invalid argument make[3]: Leaving directory '/build/ffindex-PAOiaS/ffindex-0.9.9.9/src' make[2]: Leaving directory '/build/ffindex-PAOiaS/ffindex-0.9.9.9' make[1]: Leaving directory '/build/ffindex-PAOiaS/ffindex-0.9.9.9' create-stamp debian/debhelper-build-stamp dh_testroot -a dh_prep -a dh_auto_install -a make -j4 install DESTDIR=/build/ffindex-PAOiaS/ffindex-0.9.9.9/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/ffindex-PAOiaS/ffindex-0.9.9.9' make -C src install make[2]: Entering directory '/build/ffindex-PAOiaS/ffindex-0.9.9.9/src' mkdir -p /build/ffindex-PAOiaS/ffindex-0.9.9.9/debian/tmp/usr/bin mkdir -p /build/ffindex-PAOiaS/ffindex-0.9.9.9/debian/tmp/usr/lib mkdir -p /build/ffindex-PAOiaS/ffindex-0.9.9.9/debian/tmp/usr/include install ffindex_get /build/ffindex-PAOiaS/ffindex-0.9.9.9/debian/tmp/usr/bin/ffindex_get install ffindex_build /build/ffindex-PAOiaS/ffindex-0.9.9.9/debian/tmp/usr/bin/ffindex_build install ffindex_modify /build/ffindex-PAOiaS/ffindex-0.9.9.9/debian/tmp/usr/bin/ffindex_modify install ffindex_from_fasta /build/ffindex-PAOiaS/ffindex-0.9.9.9/debian/tmp/usr/bin/ffindex_from_fasta install ffindex_from_tsv /build/ffindex-PAOiaS/ffindex-0.9.9.9/debian/tmp/usr/bin/ffindex_from_tsv install ffindex_apply /build/ffindex-PAOiaS/ffindex-0.9.9.9/debian/tmp/usr/bin/ffindex_apply install ffindex_unpack /build/ffindex-PAOiaS/ffindex-0.9.9.9/debian/tmp/usr/bin/ffindex_unpack install libffindex.so.2.0.2 /build/ffindex-PAOiaS/ffindex-0.9.9.9/debian/tmp/usr/lib/libffindex.so.2.0.2 install libffindex.a /build/ffindex-PAOiaS/ffindex-0.9.9.9/debian/tmp/usr/lib/libffindex.a ln -sf libffindex.so.2.0.2 /build/ffindex-PAOiaS/ffindex-0.9.9.9/debian/tmp/usr/lib/libffindex.so.0 ln -sf libffindex.so.2.0.2 /build/ffindex-PAOiaS/ffindex-0.9.9.9/debian/tmp/usr/lib/libffindex.so install ffindex.h /build/ffindex-PAOiaS/ffindex-0.9.9.9/debian/tmp/usr/include/ffindex.h install ffutil.h /build/ffindex-PAOiaS/ffindex-0.9.9.9/debian/tmp/usr/include/ffutil.h install ffindex_posix_search.h /build/ffindex-PAOiaS/ffindex-0.9.9.9/debian/tmp/usr/include/ffindex_posix_search.h install ffindex_apply_mpi /build/ffindex-PAOiaS/ffindex-0.9.9.9/debian/tmp/usr/bin/ffindex_apply_mpi make[2]: Leaving directory '/build/ffindex-PAOiaS/ffindex-0.9.9.9/src' make[1]: Leaving directory '/build/ffindex-PAOiaS/ffindex-0.9.9.9' debian/rules override_dh_install make[1]: Entering directory '/build/ffindex-PAOiaS/ffindex-0.9.9.9' debian/rules:39: target 'ffindex_apply_mpi.1' given more than once in the same rule dh_install find debian -name ffindex_apply_mpi -exec chrpath --delete \{\} \; make[1]: Leaving directory '/build/ffindex-PAOiaS/ffindex-0.9.9.9' dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installexamples make[1]: Entering directory '/build/ffindex-PAOiaS/ffindex-0.9.9.9' debian/rules:39: target 'ffindex_apply_mpi.1' given more than once in the same rule dh_installexamples cp -aR test /build/ffindex-PAOiaS/ffindex-0.9.9.9/debian/ffindex/usr/share/doc/ffindex/examples/; cp ./src/test.should /build/ffindex-PAOiaS/ffindex-0.9.9.9/debian/ffindex/usr/share/doc/ffindex/examples/; cp ./src/test-unlink.should /build/ffindex-PAOiaS/ffindex-0.9.9.9/debian/ffindex/usr/share/doc/ffindex/examples/; make[1]: Leaving directory '/build/ffindex-PAOiaS/ffindex-0.9.9.9' debian/rules override_dh_installman make[1]: Entering directory '/build/ffindex-PAOiaS/ffindex-0.9.9.9' debian/rules:39: target 'ffindex_apply_mpi.1' given more than once in the same rule unset LD_PRELOAD && export LD_LIBRARY_PATH=debian/tmp/usr/lib && eval 'ffindex_apply="apply a program to each FFindex entry"; ffindex_build="build file index from files in directories"; ffindex_from_fasta="populate index from FASTA file"; ffindex_get="retrieve entries from file index"; ffindex_modify="modify file index entries"; ffindex_unpack="unpack file index entries"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)"; ffindex_from_tsv="populate index from TSV file"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)";' && help2man --no-info --no-discard-stderr '--help-option= ' -n "$ffindex_apply" --version-option="-v" 'debian/tmp/usr/bin/ffindex_apply' -o 'ffindex_apply.1' --include debian/man_notes.nroff unset LD_PRELOAD && export LD_LIBRARY_PATH=debian/tmp/usr/lib && eval 'ffindex_apply="apply a program to each FFindex entry"; ffindex_build="build file index from files in directories"; ffindex_from_fasta="populate index from FASTA file"; ffindex_get="retrieve entries from file index"; ffindex_modify="modify file index entries"; ffindex_unpack="unpack file index entries"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)"; ffindex_from_tsv="populate index from TSV file"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)";' && help2man --no-info --no-discard-stderr '--help-option= ' -n "$ffindex_build" --version-option="-v" 'debian/tmp/usr/bin/ffindex_build' -o 'ffindex_build.1' --include debian/man_notes.nroff unset LD_PRELOAD && export LD_LIBRARY_PATH=debian/tmp/usr/lib && eval 'ffindex_apply="apply a program to each FFindex entry"; ffindex_build="build file index from files in directories"; ffindex_from_fasta="populate index from FASTA file"; ffindex_get="retrieve entries from file index"; ffindex_modify="modify file index entries"; ffindex_unpack="unpack file index entries"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)"; ffindex_from_tsv="populate index from TSV file"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)";' && help2man --no-info --no-discard-stderr '--help-option= ' -n "$ffindex_from_fasta" --version-option="-v" 'debian/tmp/usr/bin/ffindex_from_fasta' -o 'ffindex_from_fasta.1' --include debian/man_notes.nroff unset LD_PRELOAD && export LD_LIBRARY_PATH=debian/tmp/usr/lib && eval 'ffindex_apply="apply a program to each FFindex entry"; ffindex_build="build file index from files in directories"; ffindex_from_fasta="populate index from FASTA file"; ffindex_get="retrieve entries from file index"; ffindex_modify="modify file index entries"; ffindex_unpack="unpack file index entries"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)"; ffindex_from_tsv="populate index from TSV file"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)";' && help2man --no-info --no-discard-stderr '--help-option= ' -n "$ffindex_get" --version-option="-v" 'debian/tmp/usr/bin/ffindex_get' -o 'ffindex_get.1' --include debian/man_notes.nroff unset LD_PRELOAD && export LD_LIBRARY_PATH=debian/tmp/usr/lib && eval 'ffindex_apply="apply a program to each FFindex entry"; ffindex_build="build file index from files in directories"; ffindex_from_fasta="populate index from FASTA file"; ffindex_get="retrieve entries from file index"; ffindex_modify="modify file index entries"; ffindex_unpack="unpack file index entries"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)"; ffindex_from_tsv="populate index from TSV file"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)";' && help2man --no-info --no-discard-stderr '--help-option= ' -n "$ffindex_modify" --version-option="-v" 'debian/tmp/usr/bin/ffindex_modify' -o 'ffindex_modify.1' --include debian/man_notes.nroff unset LD_PRELOAD && export LD_LIBRARY_PATH=debian/tmp/usr/lib && eval 'ffindex_apply="apply a program to each FFindex entry"; ffindex_build="build file index from files in directories"; ffindex_from_fasta="populate index from FASTA file"; ffindex_get="retrieve entries from file index"; ffindex_modify="modify file index entries"; ffindex_unpack="unpack file index entries"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)"; ffindex_from_tsv="populate index from TSV file"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)";' && help2man --no-info --no-discard-stderr '--help-option= ' -n "$ffindex_unpack" --version-option="-v" 'debian/tmp/usr/bin/ffindex_unpack' -o 'ffindex_unpack.1' --include debian/man_notes.nroff unset LD_PRELOAD && export LD_LIBRARY_PATH=debian/tmp/usr/lib && eval 'ffindex_apply="apply a program to each FFindex entry"; ffindex_build="build file index from files in directories"; ffindex_from_fasta="populate index from FASTA file"; ffindex_get="retrieve entries from file index"; ffindex_modify="modify file index entries"; ffindex_unpack="unpack file index entries"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)"; ffindex_from_tsv="populate index from TSV file"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)";' && help2man --no-info --no-discard-stderr '--help-option= ' -n "$ffindex_apply_mpi" --version-option="-v" 'debian/tmp/usr/bin/ffindex_apply_mpi' -o 'ffindex_apply_mpi.1' --include debian/man_notes.nroff unset LD_PRELOAD && export LD_LIBRARY_PATH=debian/tmp/usr/lib && eval 'ffindex_apply="apply a program to each FFindex entry"; ffindex_build="build file index from files in directories"; ffindex_from_fasta="populate index from FASTA file"; ffindex_get="retrieve entries from file index"; ffindex_modify="modify file index entries"; ffindex_unpack="unpack file index entries"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)"; ffindex_from_tsv="populate index from TSV file"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)";' && help2man --no-info --no-discard-stderr '--help-option= ' -n "$ffindex_from_tsv" --version-option="-v" 'debian/tmp/usr/bin/ffindex_from_tsv' -o 'ffindex_from_tsv.1' --include debian/man_notes.nroff dh_installman make[1]: Leaving directory '/build/ffindex-PAOiaS/ffindex-0.9.9.9' dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'ffindex' in '../ffindex_0.9.9.9-4_amd64.deb'. dpkg-deb: building package 'libffindex0-dev' in '../libffindex0-dev_0.9.9.9-4_amd64.deb'. dpkg-deb: building package 'libffindex0' in '../libffindex0_0.9.9.9-4_amd64.deb'. dpkg-deb: building package 'libffindex0-dbgsym' in '../libffindex0-dbgsym_0.9.9.9-4_amd64.deb'. dpkg-deb: building package 'ffindex-dbgsym' in '../ffindex-dbgsym_0.9.9.9-4_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../ffindex_0.9.9.9-4_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/ffindex-PAOiaS /tmp/ffindex-0.9.9.9-44qkxoc9_ I: cleaning package lists and apt cache... W: deleting files in /tmp: test.out W: deleting files in /tmp: test.ffindex W: deleting files in /tmp: test-unlink.out W: deleting files in /tmp: test.data I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.a9kaXdKYin... I: success in 551.2361 seconds md5: ffindex-dbgsym_0.9.9.9-4_amd64.deb: OK md5: ffindex_0.9.9.9-4_amd64.deb: OK md5: libffindex0-dbgsym_0.9.9.9-4_amd64.deb: OK md5: libffindex0-dev_0.9.9.9-4_amd64.deb: OK md5: libffindex0_0.9.9.9-4_amd64.deb: OK sha1: ffindex-dbgsym_0.9.9.9-4_amd64.deb: OK sha1: ffindex_0.9.9.9-4_amd64.deb: OK sha1: libffindex0-dbgsym_0.9.9.9-4_amd64.deb: OK sha1: libffindex0-dev_0.9.9.9-4_amd64.deb: OK sha1: libffindex0_0.9.9.9-4_amd64.deb: OK sha256: ffindex-dbgsym_0.9.9.9-4_amd64.deb: OK sha256: ffindex_0.9.9.9-4_amd64.deb: OK sha256: libffindex0-dbgsym_0.9.9.9-4_amd64.deb: OK sha256: libffindex0-dev_0.9.9.9-4_amd64.deb: OK sha256: libffindex0_0.9.9.9-4_amd64.deb: OK Checksums: OK