Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/f/fenics-dolfinx/fenics-dolfinx_0.4.1-4+b1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/fenics-dolfinx-0.4.1-4+b14s78lmqa/fenics-dolfinx_0.4.1-4+b1_amd64.buildinfo Get source package info: fenics-dolfinx=1:0.4.1-4 Source URL: http://snapshot.notset.fr/mr/package/fenics-dolfinx/1:0.4.1-4/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.122 autoconf=2.71-2 automake=1:1.16.5-1.3 autopoint=0.21-6 autotools-dev=20220109.1 base-files=12.2 base-passwd=3.5.52 bash=5.1-6.1 binutils=2.38.90.20220713-2 binutils-common=2.38.90.20220713-2 binutils-x86-64-linux-gnu=2.38.90.20220713-2 bsdextrautils=2.38-5 bsdutils=1:2.38-5 build-essential=12.9 bzip2=1.0.8-5 ca-certificates=20211016 catch2=2.13.9-1 chrpath=0.16-2+b1 cmake=3.23.2-1 cmake-data=3.23.2-1 coreutils=8.32-4.1 cpp=4:12.1.0-3 cpp-11=11.3.0-5 cpp-12=12.1.0-7 dash=0.5.11+git20210903+057cd650a4ed-8 debconf=1.5.79 debhelper=13.8 debianutils=5.7-0.2 dh-autoreconf=20 dh-elpa-helper=2.0.10 dh-python=5.20220403 dh-strip-nondeterminism=1.13.0-1 diffutils=1:3.7-5 docutils-common=0.17.1+dfsg-2 dpkg=1.21.9 dpkg-dev=1.21.9 dwz=0.14-1 emacsen-common=3.0.4 file=1:5.41-4 findutils=4.9.0-3 fonts-mathjax=2.7.9+dfsg-1 g++=4:12.1.0-3 g++-12=12.1.0-7 gcc=4:12.1.0-3 gcc-11=11.3.0-5 gcc-11-base=11.3.0-5 gcc-12=12.1.0-7 gcc-12-base=12.1.0-7 gettext=0.21-6 gettext-base=0.21-6 gfortran=4:12.1.0-3 gfortran-12=12.1.0-7 grep=3.7-1 groff-base=1.22.4-8 gzip=1.12-1 hostname=3.23 ibverbs-providers=40.0-1 icu-devtools=71.1-3 init-system-helpers=1.64 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libaec-dev=1.0.6-1 libaec0=1.0.6-1 libamd2=1:5.12.0+dfsg-2 libarchive-zip-perl=1.68-1 libarchive13=3.6.0-1 libarpack2=3.8.0-1 libarpack2-dev=3.8.0-1 libasan6=11.3.0-5 libasan8=12.1.0-7 libatomic1=12.1.0-7 libattr1=1:2.5.1-1 libaudit-common=1:3.0.7-1 libaudit1=1:3.0.7-1+b1 libbasix-dev=0.4.2-6 libbasix0.4=0.4.2-6 libbinutils=2.38.90.20220713-2 libblas-dev=3.10.1-2 libblas3=3.10.1-2 libblkid1=2.38-5 libboost-atomic1.74-dev=1.74.0-16.1 libboost-atomic1.74.0=1.74.0-16.1 libboost-chrono-dev=1.74.0.3 libboost-chrono1.74-dev=1.74.0-16.1 libboost-chrono1.74.0=1.74.0-16.1 libboost-date-time1.74-dev=1.74.0-16.1 libboost-date-time1.74.0=1.74.0-16.1 libboost-dev=1.74.0.3 libboost-filesystem-dev=1.74.0.3 libboost-filesystem1.74-dev=1.74.0-16.1 libboost-filesystem1.74.0=1.74.0-16.1 libboost-iostreams-dev=1.74.0.3 libboost-iostreams1.74-dev=1.74.0-16.1 libboost-iostreams1.74.0=1.74.0-16.1 libboost-math-dev=1.74.0.3 libboost-math1.74-dev=1.74.0-16.1 libboost-math1.74.0=1.74.0-16.1 libboost-mpi-dev=1.74.0.3 libboost-mpi1.74-dev=1.74.0-16.1 libboost-mpi1.74.0=1.74.0-16.1 libboost-program-options-dev=1.74.0.3 libboost-program-options1.74-dev=1.74.0-16.1 libboost-program-options1.74.0=1.74.0-16.1 libboost-regex1.74-dev=1.74.0-16.1 libboost-regex1.74.0=1.74.0-16.1 libboost-serialization-dev=1.74.0.3 libboost-serialization1.74-dev=1.74.0-16.1 libboost-serialization1.74.0=1.74.0-16.1 libboost-system1.74-dev=1.74.0-16.1 libboost-system1.74.0=1.74.0-16.1 libboost-thread-dev=1.74.0.3 libboost-thread1.74-dev=1.74.0-16.1 libboost-thread1.74.0=1.74.0-16.1 libboost-timer-dev=1.74.0.3 libboost-timer1.74-dev=1.74.0-16.1 libboost-timer1.74.0=1.74.0-16.1 libboost1.74-dev=1.74.0-16.1 libbrotli1=1.0.9-2+b3 libbsd0=0.11.6-1 libbtf1=1:5.12.0+dfsg-2 libbz2-1.0=1.0.8-5 libc-bin=2.33-8 libc-dev-bin=2.33-8 libc6=2.33-8 libc6-dbg=2.33-8 libc6-dev=2.33-8 libcamd2=1:5.12.0+dfsg-2 libcap-ng0=0.8.3-1 libcap2=1:2.44-1 libcbor0.8=0.8.0-2 libcc1-0=12.1.0-7 libccolamd2=1:5.12.0+dfsg-2 libcholmod3=1:5.12.0+dfsg-2 libcolamd2=1:5.12.0+dfsg-2 libcom-err2=1.46.5-2 libcombblas1.16.0=1.6.2-8 libcrypt-dev=1:4.4.28-2 libcrypt1=1:4.4.28-2 libctf-nobfd0=2.38.90.20220713-2 libctf0=2.38.90.20220713-2 libcurl3-gnutls=7.84.0-2 libcurl4=7.84.0-2 libcurl4-openssl-dev=7.84.0-2 libcxsparse3=1:5.12.0+dfsg-2 libdb5.3=5.3.28+dfsg1-0.10 libdebconfclient0=0.263 libdebhelper-perl=13.8 libdpkg-perl=1.21.9 libedit2=3.1-20210910-1 libeigen3-dev=3.4.0-3 libelf1=0.187-1 libevent-2.1-7=2.1.12-stable-5+b1 libevent-core-2.1-7=2.1.12-stable-5+b1 libevent-dev=2.1.12-stable-5+b1 libevent-extra-2.1-7=2.1.12-stable-5+b1 libevent-openssl-2.1-7=2.1.12-stable-5+b1 libevent-pthreads-2.1-7=2.1.12-stable-5+b1 libexpat1=2.4.8-1 libexpat1-dev=2.4.8-1 libfabric1=1.11.0-3 libffi8=3.4.2-4 libfftw3-bin=3.3.8-2 libfftw3-dev=3.3.8-2 libfftw3-double3=3.3.8-2 libfftw3-long3=3.3.8-2 libfftw3-mpi-dev=3.3.8-2 libfftw3-mpi3=3.3.8-2 libfftw3-quad3=3.3.8-2 libfftw3-single3=3.3.8-2 libfido2-1=1.11.0-1+b1 libfile-stripnondeterminism-perl=1.13.0-1 libgcc-11-dev=11.3.0-5 libgcc-12-dev=12.1.0-7 libgcc-s1=12.1.0-7 libgcrypt20=1.10.1-2 libgdbm-compat4=1.23-1 libgdbm6=1.23-1 libgfortran-12-dev=12.1.0-7 libgfortran5=12.1.0-7 libglib2.0-0=2.72.3-1 libgmp10=2:6.2.1+dfsg1-1 libgnutls30=3.7.6-2 libgomp1=12.1.0-7 libgpg-error0=1.45-2 libgprofng0=2.38.90.20220713-2 libgssapi-krb5-2=1.19.2-2+b2 libhdf5-mpi-dev=1.10.7+repack-4+b1 libhdf5-openmpi-103-1=1.10.7+repack-4+b1 libhdf5-openmpi-cpp-103-1=1.10.7+repack-4+b1 libhdf5-openmpi-dev=1.10.7+repack-4+b1 libhdf5-openmpi-fortran-102=1.10.7+repack-4+b1 libhdf5-openmpi-hl-100=1.10.7+repack-4+b1 libhdf5-openmpi-hl-cpp-100=1.10.7+repack-4+b1 libhdf5-openmpi-hl-fortran-100=1.10.7+repack-4+b1 libhogweed6=3.7.3-1 libhwloc-dev=2.8.0-1 libhwloc-plugins=2.8.0-1 libhwloc15=2.8.0-1 libhypre-2.23.0=2.23.0-3 libhypre-dev=2.23.0-3 libibverbs-dev=40.0-1 libibverbs1=40.0-1 libicu-dev=71.1-3 libicu71=71.1-3 libidn2-0=2.3.3-1 libisl23=0.25-1 libitm1=12.1.0-7 libjpeg-dev=1:2.1.2-1 libjpeg62-turbo=1:2.1.2-1 libjpeg62-turbo-dev=1:2.1.2-1 libjs-jquery=3.6.0+dfsg+~3.5.13-1 libjs-jquery-ui=1.13.1+dfsg-1 libjs-mathjax=2.7.9+dfsg-1 libjs-sphinxdoc=4.5.0-4 libjs-underscore=1.13.3~dfsg+~1.11.4-1 libjson-perl=4.07000-1 libjsoncpp25=1.9.5-4 libk5crypto3=1.19.2-2+b2 libkeyutils1=1.6.3-1 libklu1=1:5.12.0+dfsg-2 libkrb5-3=1.19.2-2+b2 libkrb5support0=1.19.2-2+b2 liblapack-dev=3.10.1-2 liblapack3=3.10.1-2 libldap-2.5-0=2.5.12+dfsg-2 libldl2=1:5.12.0+dfsg-2 liblsan0=12.1.0-7 libltdl-dev=2.4.7-4 libltdl7=2.4.7-4 liblz4-1=1.9.3-2 liblzma5=5.2.5-2.1 libmagic-mgc=1:5.41-4 libmagic1=1:5.41-4 libmd0=1.0.4-2 libmetis5=5.1.0.dfsg-7 libmongoose2=1:5.12.0+dfsg-2 libmount1=2.38-5 libmpc3=1.2.1-2 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libmumps-5.4=5.4.1-2+b1 libmumps-dev=5.4.1-2+b1 libmumps-headers-dev=5.4.1-2 libncurses6=6.3+20220423-2 libncursesw6=6.3+20220423-2 libnettle8=3.7.3-1 libnghttp2-14=1.48.0-1 libnl-3-200=3.5.0-0.1 libnl-3-dev=3.5.0-0.1 libnl-route-3-200=3.5.0-0.1 libnl-route-3-dev=3.5.0-0.1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnuma-dev=2.0.14-3 libnuma1=2.0.14-3 libopenmpi-dev=4.1.4-1 libopenmpi3=4.1.4-1 libp11-kit0=0.24.1-1 libpam-modules=1.4.0-13 libpam-modules-bin=1.4.0-13 libpam-runtime=1.4.0-13 libpam0g=1.4.0-13 libparpack2=3.8.0-1 libparpack2-dev=3.8.0-1 libpciaccess0=0.16-3 libpcre2-8-0=10.40-1 libpcre3=2:8.39-14 libperl5.34=5.34.0-5 libpetsc-complex-dev=3.16.6+dfsg1-1 libpetsc-complex3.16=3.16.6+dfsg1-1 libpetsc-complex3.16-dev=3.16.6+dfsg1-1 libpetsc-real-dev=3.16.6+dfsg1-1 libpetsc-real3.16=3.16.6+dfsg1-1 libpetsc-real3.16-dev=3.16.6+dfsg1-1 libpetsc3.16-dev-common=3.16.6+dfsg1-1 libpipeline1=1.5.6-1 libpmix-dev=4.1.2-2 libpmix2=4.1.2-2 libprocps8=2:3.3.17-7+b1 libpsl5=0.21.0-1.2 libpsm-infinipath1=3.3+20.604758e7-6.1 libpsm2-2=11.2.185-1 libpthread-stubs0-dev=0.4-1 libptscotch-7.0=7.0.1-2 libptscotch-dev=7.0.1-2 libpython3-all-dev=3.10.5-3 libpython3-dev=3.10.5-3 libpython3-stdlib=3.10.5-3 libpython3.10=3.10.5-1 libpython3.10-dev=3.10.5-1 libpython3.10-minimal=3.10.5-1 libpython3.10-stdlib=3.10.5-1 libpython3.9-minimal=3.9.13-1 libpython3.9-stdlib=3.9.13-1 libquadmath0=12.1.0-7 librbio2=1:5.12.0+dfsg-2 librdmacm1=40.0-1 libreadline8=8.1.2-1.2 librhash0=1.4.3-3 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.28+dfsg-6 libsasl2-modules-db=2.1.28+dfsg-6 libscalapack-mpi-dev=2.2.1-1 libscalapack-openmpi-dev=2.2.1-1 libscalapack-openmpi2.2=2.2.1-1 libscotch-7.0=7.0.1-2 libscotch-dev=7.0.1-2 libseccomp2=2.5.4-1 libselinux1=3.4-1 libsemanage-common=3.4-1 libsemanage2=3.4-1 libsepol2=3.4-2 libsigsegv2=2.14-1 libslepc-complex-dev=3.16.2+dfsg1-1 libslepc-complex3.16=3.16.2+dfsg1-1 libslepc-complex3.16-dev=3.16.2+dfsg1-1 libslepc-real-dev=3.16.2+dfsg1-1 libslepc-real3.16=3.16.2+dfsg1-1 libslepc-real3.16-dev=3.16.2+dfsg1-1 libsliplu1=1:5.12.0+dfsg-2 libsmartcols1=2.38-5 libspqr2=1:5.12.0+dfsg-2 libsqlite3-0=3.39.2-1 libssh2-1=1.10.0-3+b1 libssl-dev=3.0.4-2 libssl3=3.0.4-2 libstdc++-11-dev=11.3.0-5 libstdc++-12-dev=12.1.0-7 libstdc++6=12.1.0-7 libsub-override-perl=0.09-3 libsuitesparse-dev=1:5.12.0+dfsg-2 libsuitesparseconfig5=1:5.12.0+dfsg-2 libsuperlu-dev=5.3.0+dfsg1-2 libsuperlu-dist-dev=7.2.0+dfsg1-2+b1 libsuperlu-dist7=7.2.0+dfsg1-2+b1 libsuperlu5=5.3.0+dfsg1-2 libsystemd0=251.3-1 libsz2=1.0.6-1 libtasn1-6=4.18.0-4 libtinfo6=6.3+20220423-2 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.7-4 libtrilinos-amesos-13.2=13.2.0-3 libtrilinos-aztecoo-13.2=13.2.0-3 libtrilinos-aztecoo-dev=13.2.0-3 libtrilinos-epetra-13.2=13.2.0-3 libtrilinos-epetraext-13.2=13.2.0-3 libtrilinos-galeri-13.2=13.2.0-3 libtrilinos-ifpack-13.2=13.2.0-3 libtrilinos-kokkos-13.2=13.2.0-3 libtrilinos-ml-13.2=13.2.0-3 libtrilinos-ml-dev=13.2.0-3 libtrilinos-teuchos-13.2=13.2.0-3 libtrilinos-trilinosss-13.2=13.2.0-3 libtrilinos-trilinosss-dev=13.2.0-3 libtrilinos-triutils-13.2=13.2.0-3 libtrilinos-zoltan-13.2=13.2.0-3 libtrilinos-zoltan-dev=13.2.0-3 libtsan0=11.3.0-5 libtsan2=12.1.0-7 libubsan1=12.1.0-7 libuchardet0=0.0.7-1 libucx0=1.13.0-1 libudev1=251.3-1 libumfpack5=1:5.12.0+dfsg-2 libunistring2=1.0-1 libuuid1=2.38-5 libuv1=1.44.1-2 libx11-6=2:1.7.5-1 libx11-data=2:1.7.5-1 libx11-dev=2:1.7.5-1 libxau-dev=1:1.0.9-1 libxau6=1:1.0.9-1 libxcb1=1.14-3 libxcb1-dev=1.14-3 libxdmcp-dev=1:1.1.2-3 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.4-1 libxml2=2.9.14+dfsg-1 libxml2-dev=2.9.14+dfsg-1 libxnvctrl0=470.129.06-1 libxsimd-dev=8.1.0-7 libxtensor-dev=0.24.2-2 libyaml-0-2=0.2.5-1 libyaml-dev=0.2.5-1 libzstd1=1.5.2+dfsg-1 linux-libc-dev=5.18.5-1 login=1:4.11.1+dfsg1-2 lsb-base=11.2 m4=1.4.18-5 make=4.3-4.1 man-db=2.10.2-1 mawk=1.3.4.20200120-3.1 media-types=8.0.0 mpi-default-bin=1.14 mpi-default-dev=1.14 ncurses-base=6.3+20220423-2 ncurses-bin=6.3+20220423-2 nlohmann-json3-dev=3.10.5-2 ocl-icd-libopencl1=2.2.14-3 ocl-icd-opencl-dev=2.2.14-3 opencl-c-headers=3.0~2022.05.18-1 opencl-clhpp-headers=3.0~2022.05.18-1 openmpi-bin=4.1.4-1 openmpi-common=4.1.4-1 openssh-client=1:9.0p1-1+b1 openssl=3.0.4-2 passwd=1:4.11.1+dfsg1-2 patch=2.7.6-7 perl=5.34.0-5 perl-base=5.34.0-5 perl-modules-5.34=5.34.0-5 pkg-config=0.29.2-1 po-debconf=1.0.21+nmu1 procps=2:3.3.17-7+b1 pybind11-dev=2.9.2-1 python-babel-localedata=2.8.0+dfsg.1-7 python-petsc4py-doc=3.16.6-1 python3=3.10.5-3 python3-alabaster=0.7.12-1 python3-all=3.10.5-3 python3-all-dev=3.10.5-3 python3-babel=2.8.0+dfsg.1-7 python3-basix=0.4.2-6 python3-certifi=2020.6.20-1 python3-cffi=1.15.1-1 python3-cffi-backend=1.15.1-1 python3-chardet=4.0.0-2 python3-charset-normalizer=2.0.6-2 python3-dev=3.10.5-3 python3-distutils=3.10.5-2 python3-docutils=0.17.1+dfsg-2 python3-ffcx=1:0.4.2-2 python3-idna=3.3-1 python3-imagesize=1.4.1-1 python3-importlib-metadata=4.6.4-1 python3-jinja2=3.0.3-1 python3-lib2to3=3.10.5-2 python3-markupsafe=2.0.1-2+b1 python3-minimal=3.10.5-3 python3-more-itertools=8.10.0-2 python3-mpi4py=3.1.3-2 python3-numpy=1:1.21.5-1 python3-packaging=21.3-1 python3-petsc4py=3.16.6-1 python3-petsc4py-complex=3.16.6-1 python3-petsc4py-complex3.16=3.16.6-1 python3-petsc4py-real=3.16.6-1 python3-petsc4py-real3.16=3.16.6-1 python3-pip=22.2+dfsg-1 python3-pkg-resources=59.6.0-1.2 python3-ply=3.11-5 python3-pybind11=2.9.2-1 python3-pycparser=2.21-1 python3-pygments=2.12.0+dfsg-2 python3-pyparsing=3.0.7-2 python3-requests=2.27.1+dfsg-1 python3-roman=3.3-1 python3-setuptools=59.6.0-1.2 python3-six=1.16.0-3 python3-slepc4py=3.16.1-1 python3-slepc4py-complex=3.16.1-1 python3-slepc4py-complex3.16=3.16.1-1 python3-slepc4py-real=3.16.1-1 python3-slepc4py-real3.16=3.16.1-1 python3-snowballstemmer=2.2.0-1 python3-sphinx=4.5.0-4 python3-tz=2022.1-1 python3-ufl=2022.1.0-2 python3-urllib3=1.26.9-1 python3-wheel=0.37.1-2 python3-zipp=1.0.0-4 python3.10=3.10.5-1 python3.10-dev=3.10.5-1 python3.10-minimal=3.10.5-1 python3.9=3.9.13-1 python3.9-minimal=3.9.13-1 readline-common=8.1.2-1.2 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sgml-base=1.30 sphinx-common=4.5.0-4 swig=4.0.2-2 swig4.0=4.0.2-2 sysvinit-utils=3.03-1 tar=1.34+dfsg-1 trilinos-dev=13.2.0-3 tzdata=2022a-1 util-linux=2.38-5 util-linux-extra=2.38-5 valgrind=1:3.18.1-1.1 valgrind-mpi=1:3.18.1-1.1 x11proto-dev=2022.1-1 xml-core=0.18+nmu1 xorg-sgml-doctools=1:1.11-1.1 xtl-dev=0.7.2-2 xtrans-dev=1.4.0-1 xz-utils=5.2.5-2.1 zlib1g=1:1.2.11.dfsg-4 zlib1g-dev=1:1.2.11.dfsg-4 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220718T031307Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220718T031307Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220804T091827Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20220721T031210Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d fenics-dolfinx=1:0.4.1-4 && mkdir -p /build/fenics-dolfinx-nE5s0C && dpkg-source --no-check -x /*.dsc /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1 && cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1 && { printf '%s' 'fenics-dolfinx (1:0.4.1-4+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Python 3.10 only -- amd64 / i386 Build Daemon (x86-csail-01) Sat, 23 Jul 2022 11:34:27 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/fenics-dolfinx-nE5s0C" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1658576067" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/fenics-dolfinx-nE5s0C /tmp/fenics-dolfinx-0.4.1-4+b14s78lmqa bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20220721T031210Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.6c7pfSLEvo as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.6c7pfSLEvo Reading package lists... Building dependency tree... util-linux is already the newest version (2.38-5). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 136 kB of archives. After this operation, 401 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20220721T031210Z unstable/main amd64 libfakeroot amd64 1.29-1 [48.5 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220721T031210Z unstable/main amd64 fakeroot amd64 1.29-1 [87.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 136 kB in 0s (1029 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4626 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.29-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.29-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.29-1_amd64.deb ... Unpacking fakeroot (1.29-1) ... Setting up libfakeroot:amd64 (1.29-1) ... Setting up fakeroot (1.29-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-8) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220718T031307Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220718T031307Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220804T091827Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20220721T031210Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.6c7pfSLEvo Get:1 http://snapshot.notset.fr/archive/debian/20220718T031307Z bookworm InRelease [130 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220804T091827Z unstable InRelease [192 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20220721T031210Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20220718T031307Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220718T031307Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20220718T031307Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220718T031307Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20220718T031307Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220718T031307Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20220718T031307Z bookworm/main Sources [12.1 MB] Get:5 http://snapshot.notset.fr/archive/debian/20220718T031307Z bookworm/main amd64 Packages [11.5 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20220804T091827Z unstable/main amd64 Packages Err:6 http://snapshot.notset.fr/archive/debian/20220804T091827Z unstable/main amd64 Packages 404 Not Found [IP: 10.13.0.253 80] Ign:6 http://snapshot.notset.fr/archive/debian/20220804T091827Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20220804T091827Z unstable/main amd64 Packages [12.6 MB] Fetched 36.5 MB in 30s (1215 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.6c7pfSLEvo I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d fenics-dolfinx=1:0.4.1-4 && mkdir -p /build/fenics-dolfinx-nE5s0C && dpkg-source --no-check -x /*.dsc /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1 && cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1 && { printf '%s' 'fenics-dolfinx (1:0.4.1-4+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Python 3.10 only -- amd64 / i386 Build Daemon (x86-csail-01) Sat, 23 Jul 2022 11:34:27 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/fenics-dolfinx-nE5s0C"' exec /tmp/mmdebstrap.6c7pfSLEvo Reading package lists... NOTICE: 'fenics-dolfinx' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/fenics/fenics-dolfinx.git Please use: git clone https://salsa.debian.org/science-team/fenics/fenics-dolfinx.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 740 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20220718T031307Z bookworm/main fenics-dolfinx 1:0.4.1-4 (dsc) [3924 B] Get:2 http://snapshot.notset.fr/archive/debian/20220718T031307Z bookworm/main fenics-dolfinx 1:0.4.1-4 (tar) [701 kB] Get:3 http://snapshot.notset.fr/archive/debian/20220718T031307Z bookworm/main fenics-dolfinx 1:0.4.1-4 (diff) [35.4 kB] Fetched 740 kB in 1s (1035 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'fenics-dolfinx_0.4.1-4.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting fenics-dolfinx in /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1 dpkg-source: info: unpacking fenics-dolfinx_0.4.1.orig.tar.gz dpkg-source: info: unpacking fenics-dolfinx_0.4.1-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying extra_CXXFLAGS.patch dpkg-source: info: applying python_cmake_module_path.patch dpkg-source: info: applying lib_rename.patch dpkg-source: info: applying enable-importing-cffi_support-from-new-or-old-numba.patch dpkg-source: info: applying python_unit_test_32bit.patch dpkg-source: info: applying docs_local_mathjax.patch dpkg-source: info: applying cmake_dolfinx_mpi_cxx.patch dpkg-source: info: applying cmake_dolfinx_xsimd.patch dpkg-source: info: applying docs_no_jupytext.patch dpkg-source: info: applying test_no_numba.patch dpkg-source: info: applying mipsel_python_lighter.patch dpkg-source: info: applying skip_demo_stokes_direct.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1658576067" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.6c7pfSLEvo dpkg-buildpackage: info: source package fenics-dolfinx dpkg-buildpackage: info: source version 1:0.4.1-4+b1 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by amd64 / i386 Build Daemon (x86-csail-01) dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean py3versions: no X-Python3-Version in control file, using supported versions dh clean --buildsystem=cmake --with python3,sphinxdoc debian/rules override_dh_auto_clean make[1]: Entering directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1' py3versions: no X-Python3-Version in control file, using supported versions dh_auto_clean --builddir=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real dh_auto_clean --builddir=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex make[1]: Leaving directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1' dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules build-arch py3versions: no X-Python3-Version in control file, using supported versions dh build-arch --buildsystem=cmake --with python3,sphinxdoc dh_update_autotools_config -a -O--buildsystem=cmake dh_autoreconf -a -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1' py3versions: no X-Python3-Version in control file, using supported versions PETSC_DIR=/usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real dh_auto_configure --builddir=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real -- -D CMAKE_BUILD_TYPE:STRING=RelWithDebInfo -D BUILD_SHARED_LIBS:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D DOLFINX_ENABLE_TRILINOS:BOOL=OFF -D DOLFINX_ENABLE_HDF5:BOOL=ON -D HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc -D DOLFINX_ENABLE_PARMETIS:BOOL=OFF -D DOLFINX_ENABLE_SCOTCH:BOOL=ON -D DOLFINX_ENABLE_DOCS:BOOL=OFF -D DOLFINX_ENABLE_MPI:BOOL=ON -D MPIEXEC_PARAMS:STRING="--oversubscribe" -D CMAKE_CXX_FLAGS:STRING="-fpermissive" -D DOLFINX_EXTRA_CXX_FLAGS:STRING="-g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security" -DXTENSOR_USE_XSIMD=ON /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp cd obj-x86_64-linux-gnu-real && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -D CMAKE_BUILD_TYPE:STRING=RelWithDebInfo -D BUILD_SHARED_LIBS:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D DOLFINX_ENABLE_TRILINOS:BOOL=OFF -D DOLFINX_ENABLE_HDF5:BOOL=ON -D HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc -D DOLFINX_ENABLE_PARMETIS:BOOL=OFF -D DOLFINX_ENABLE_SCOTCH:BOOL=ON -D DOLFINX_ENABLE_DOCS:BOOL=OFF -D DOLFINX_ENABLE_MPI:BOOL=ON -D MPIEXEC_PARAMS:STRING=--oversubscribe -D CMAKE_CXX_FLAGS:STRING=-fpermissive -D "DOLFINX_EXTRA_CXX_FLAGS:STRING=-g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security" -DXTENSOR_USE_XSIMD=ON /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp .. CMake Warning: Ignoring extra path from command line: ".." -- The C compiler identification is GNU 12.1.0 -- The CXX compiler identification is GNU 12.1.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found suitable version "3.1", minimum required is "3") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found suitable version "3.1", minimum required is "3") -- Found MPI: TRUE (found suitable version "3.1", minimum required is "3") -- Performing Test HAVE_PIPE -- Performing Test HAVE_PIPE - Success -- Performing Test HAVE_PEDANTIC -- Performing Test HAVE_PEDANTIC - Success -- Performing Test HAVE_DEBUG -- Performing Test HAVE_DEBUG - Success -- Performing Test HAVE_O2_OPTIMISATION -- Performing Test HAVE_O2_OPTIMISATION - Success -- Found Boost 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer -- Found boost_headers 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.74.0 -- Found boost_timer 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.74.0 -- [x] libboost_timer.so.1.74.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: chrono;headers -- Found boost_chrono 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_chrono-1.74.0 -- [x] libboost_chrono.so.1.74.0 -- [ ] libboost_chrono.a -- Adding boost_chrono dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70") found components: timer -- Found Python3: /usr/bin/python3.10 (found version "3.10.5") found components: Interpreter -- Adding /usr/lib/python3/dist-packages/basix to Basix/xtensor/xtl search hints -- Performing Test arch_native_supported -- Performing Test arch_native_supported - Success -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Checking for one of the modules 'PETSc>=3.15;petsc>=3.15' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.7") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Could NOT find ufcx (missing: ufcx_DIR) -- Asking Python module FFCx for location of UFC... (Python executable: /usr/bin/python3.10) -- Found UFCx: /usr/lib/python3/dist-packages/ffcx/codegeneration (found suitable version "0.4.2", minimum required is "0.4") CMake Warning at CMakeLists.txt:227 (find_package): By not providing "FindADIOS2.cmake" in CMAKE_MODULE_PATH this project has asked CMake to find a package configuration file provided by "ADIOS2", but CMake did not find one. Could not find a package configuration file provided by "ADIOS2" (requested version 2.7.1) with any of the following names: ADIOS2Config.cmake adios2-config.cmake Add the installation prefix of "ADIOS2" to CMAKE_PREFIX_PATH or set "ADIOS2_DIR" to a directory containing one of the above files. If "ADIOS2" provides a separate development package or SDK, be sure it has been installed. -- Checking for one of the modules 'slepc>=3.15' -- Checking for package 'SCOTCH-PT' -- Found SCOTCH (version 7.0.1) -- Performing test SCOTCH_TEST_RUNS -- Performing test SCOTCH_TEST_RUNS - Success -- Found SCOTCH: /usr/lib/x86_64-linux-gnu/libptscotch.so;/usr/lib/x86_64-linux-gnu/libscotch.so;/usr/lib/x86_64-linux-gnu/libptscotcherr.so -- Checking for package 'KaHIP' -- KaHIP could not be found/configured. (missing: KAHIP_INCLUDE_DIRS KAHIP_LIBRARIES KAHIP_TEST_RUNS) -- The following features have been enabled: * BUILD_SHARED_LIBS, Build DOLFINx with shared libraries. * XTENSOR_USE_XSIMD, Enable SIMD with xtensor (xsimd). * DOLFINX_ENABLE_ADIOS2, Compile with support for ADIOS2. * DOLFINX_ENABLE_SCOTCH, Compile with support for SCOTCH. * DOLFINX_ENABLE_SLEPC, Compile with support for SLEPc. * DOLFINX_ENABLE_KAHIP, Compile with support for KaHIP. -- The following OPTIONAL packages have been found: * SCOTCH, Programs and libraries for graph, mesh and hypergraph partitioning, Parallel graph partitioning -- The following RECOMMENDED packages have been found: * SLEPc, Scalable Library for Eigenvalue Problem Computations, Eigenvalue computation -- The following REQUIRED packages have been found: * MPI (required version >= 3) * boost_chrono (required version == 1.74.0) * boost_headers (required version == 1.74.0) * boost_timer (required version == 1.74.0) * Boost (required version >= 1.70), Boost C++ libraries, * Basix * xsimd (required version >= 8.0.2) * xtensor (required version >= 0.23.10), C++ library for numerical analysis with multi-dimensional array expressions., * PETSc, Portable, Extensible Toolkit for Scientific Computation (PETSc), PETSc linear algebra backend * HDF5, Hierarchical Data Format 5 (HDF5), * Python3 * UFCx (required version >= 0.4), Interface for form-compilers (part of FFCx), * PkgConfig -- The following features have been disabled: * DOLFINX_SKIP_BUILD_TESTS, Skip build tests for testing usability of dependency packages. * CMAKE_INSTALL_RPATH_USE_LINK_PATH, Add paths to linker search and installed rpath. * XTENSOR_OPTIMIZE, Enable architecture-specific optimizations as defined by xtensor. * DOLFINX_ENABLE_PARMETIS, Compile with support for ParMETIS. -- The following OPTIONAL packages have not been found: * ufcx (required version >= 0.4) * ADIOS2 (required version >= 2.7.1), Adaptable Input/Output (I/O) System., IO, including in parallel * KaHIP, A family of graph partitioning programs, Parallel graph partitioning -- -- Copying demo and test data to build directory. -- ---------------------------------------------- -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY DOLFINX_ENABLE_DOCS DOLFINX_ENABLE_HDF5 DOLFINX_ENABLE_MPI DOLFINX_ENABLE_TRILINOS FETCHCONTENT_FULLY_DISCONNECTED MPIEXEC_PARAMS -- Build files have been written to: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real PETSC_DIR=/usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex SLEPC_DIR=/usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex dh_auto_configure --builddir=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex -- -D CMAKE_BUILD_TYPE:STRING=RelWithDebInfo -D BUILD_SHARED_LIBS:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D DOLFINX_ENABLE_TRILINOS:BOOL=OFF -D DOLFINX_ENABLE_HDF5:BOOL=ON -D HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc -D DOLFINX_ENABLE_PARMETIS:BOOL=OFF -D DOLFINX_ENABLE_SCOTCH:BOOL=ON -D DOLFINX_ENABLE_DOCS:BOOL=OFF -D DOLFINX_ENABLE_MPI:BOOL=ON -D MPIEXEC_PARAMS:STRING="--oversubscribe" -D CMAKE_CXX_FLAGS:STRING="-fpermissive" -D DOLFINX_EXTRA_CXX_FLAGS:STRING="-g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security" -DXTENSOR_USE_XSIMD=ON /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp cd obj-x86_64-linux-gnu-complex && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -D CMAKE_BUILD_TYPE:STRING=RelWithDebInfo -D BUILD_SHARED_LIBS:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D DOLFINX_ENABLE_TRILINOS:BOOL=OFF -D DOLFINX_ENABLE_HDF5:BOOL=ON -D HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc -D DOLFINX_ENABLE_PARMETIS:BOOL=OFF -D DOLFINX_ENABLE_SCOTCH:BOOL=ON -D DOLFINX_ENABLE_DOCS:BOOL=OFF -D DOLFINX_ENABLE_MPI:BOOL=ON -D MPIEXEC_PARAMS:STRING=--oversubscribe -D CMAKE_CXX_FLAGS:STRING=-fpermissive -D "DOLFINX_EXTRA_CXX_FLAGS:STRING=-g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security" -DXTENSOR_USE_XSIMD=ON /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp .. CMake Warning: Ignoring extra path from command line: ".." -- The C compiler identification is GNU 12.1.0 -- The CXX compiler identification is GNU 12.1.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found suitable version "3.1", minimum required is "3") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found suitable version "3.1", minimum required is "3") -- Found MPI: TRUE (found suitable version "3.1", minimum required is "3") -- Performing Test HAVE_PIPE -- Performing Test HAVE_PIPE - Success -- Performing Test HAVE_PEDANTIC -- Performing Test HAVE_PEDANTIC - Success -- Performing Test HAVE_DEBUG -- Performing Test HAVE_DEBUG - Success -- Performing Test HAVE_O2_OPTIMISATION -- Performing Test HAVE_O2_OPTIMISATION - Success -- Found Boost 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer -- Found boost_headers 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.74.0 -- Found boost_timer 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.74.0 -- [x] libboost_timer.so.1.74.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: chrono;headers -- Found boost_chrono 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_chrono-1.74.0 -- [x] libboost_chrono.so.1.74.0 -- [ ] libboost_chrono.a -- Adding boost_chrono dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70") found components: timer -- Found Python3: /usr/bin/python3.10 (found version "3.10.5") found components: Interpreter -- Adding /usr/lib/python3/dist-packages/basix to Basix/xtensor/xtl search hints -- Performing Test arch_native_supported -- Performing Test arch_native_supported - Success -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Checking for one of the modules 'PETSc>=3.15;petsc>=3.15' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - found -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.7") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Could NOT find ufcx (missing: ufcx_DIR) -- Asking Python module FFCx for location of UFC... (Python executable: /usr/bin/python3.10) -- Found UFCx: /usr/lib/python3/dist-packages/ffcx/codegeneration (found suitable version "0.4.2", minimum required is "0.4") CMake Warning at CMakeLists.txt:227 (find_package): By not providing "FindADIOS2.cmake" in CMAKE_MODULE_PATH this project has asked CMake to find a package configuration file provided by "ADIOS2", but CMake did not find one. Could not find a package configuration file provided by "ADIOS2" (requested version 2.7.1) with any of the following names: ADIOS2Config.cmake adios2-config.cmake Add the installation prefix of "ADIOS2" to CMAKE_PREFIX_PATH or set "ADIOS2_DIR" to a directory containing one of the above files. If "ADIOS2" provides a separate development package or SDK, be sure it has been installed. -- Checking for one of the modules 'slepc>=3.15' -- Checking for package 'SCOTCH-PT' -- Found SCOTCH (version 7.0.1) -- Performing test SCOTCH_TEST_RUNS -- Performing test SCOTCH_TEST_RUNS - Success -- Found SCOTCH: /usr/lib/x86_64-linux-gnu/libptscotch.so;/usr/lib/x86_64-linux-gnu/libscotch.so;/usr/lib/x86_64-linux-gnu/libptscotcherr.so -- Checking for package 'KaHIP' -- KaHIP could not be found/configured. (missing: KAHIP_INCLUDE_DIRS KAHIP_LIBRARIES KAHIP_TEST_RUNS) -- The following features have been enabled: * BUILD_SHARED_LIBS, Build DOLFINx with shared libraries. * XTENSOR_USE_XSIMD, Enable SIMD with xtensor (xsimd). * DOLFINX_ENABLE_ADIOS2, Compile with support for ADIOS2. * DOLFINX_ENABLE_SCOTCH, Compile with support for SCOTCH. * DOLFINX_ENABLE_SLEPC, Compile with support for SLEPc. * DOLFINX_ENABLE_KAHIP, Compile with support for KaHIP. -- The following OPTIONAL packages have been found: * SCOTCH, Programs and libraries for graph, mesh and hypergraph partitioning, Parallel graph partitioning -- The following RECOMMENDED packages have been found: * SLEPc, Scalable Library for Eigenvalue Problem Computations, Eigenvalue computation -- The following REQUIRED packages have been found: * MPI (required version >= 3) * boost_chrono (required version == 1.74.0) * boost_headers (required version == 1.74.0) * boost_timer (required version == 1.74.0) * Boost (required version >= 1.70), Boost C++ libraries, * Basix * xsimd (required version >= 8.0.2) * xtensor (required version >= 0.23.10), C++ library for numerical analysis with multi-dimensional array expressions., * PETSc, Portable, Extensible Toolkit for Scientific Computation (PETSc), PETSc linear algebra backend * HDF5, Hierarchical Data Format 5 (HDF5), * Python3 * UFCx (required version >= 0.4), Interface for form-compilers (part of FFCx), * PkgConfig -- The following features have been disabled: * DOLFINX_SKIP_BUILD_TESTS, Skip build tests for testing usability of dependency packages. * CMAKE_INSTALL_RPATH_USE_LINK_PATH, Add paths to linker search and installed rpath. * XTENSOR_OPTIMIZE, Enable architecture-specific optimizations as defined by xtensor. * DOLFINX_ENABLE_PARMETIS, Compile with support for ParMETIS. -- The following OPTIONAL packages have not been found: * ufcx (required version >= 0.4) * ADIOS2 (required version >= 2.7.1), Adaptable Input/Output (I/O) System., IO, including in parallel * KaHIP, A family of graph partitioning programs, Parallel graph partitioning -- -- Copying demo and test data to build directory. -- ---------------------------------------------- -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY DOLFINX_ENABLE_DOCS DOLFINX_ENABLE_HDF5 DOLFINX_ENABLE_MPI DOLFINX_ENABLE_TRILINOS FETCHCONTENT_FULLY_DISCONNECTED MPIEXEC_PARAMS -- Build files have been written to: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex make[1]: Leaving directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1' debian/rules override_dh_auto_build make[1]: Entering directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1' py3versions: no X-Python3-Version in control file, using supported versions PETSC_DIR=/usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real dh_auto_build --builddir=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real cd obj-x86_64-linux-gnu-real && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real' /usr/bin/cmake -S/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -B/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/CMakeFiles /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real' make -f dolfinx/CMakeFiles/dolfinx.dir/build.make dolfinx/CMakeFiles/dolfinx.dir/depend make[4]: Entering directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real' cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx/CMakeFiles/dolfinx.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real' make -f dolfinx/CMakeFiles/dolfinx.dir/build.make dolfinx/CMakeFiles/dolfinx.dir/build make[4]: Entering directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real' [ 1%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o [ 3%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/Table.cpp.o [ 5%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/Timer.cpp.o [ 7%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/TimeLogger.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o -MF CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o.d -o CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/common/IndexMap.cpp cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/Table.cpp.o -MF CMakeFiles/dolfinx.dir/common/Table.cpp.o.d -o CMakeFiles/dolfinx.dir/common/Table.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/common/Table.cpp [ 11%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/MPI.cpp.o [ 11%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/defines.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/MPI.cpp.o -MF CMakeFiles/dolfinx.dir/common/MPI.cpp.o.d -o CMakeFiles/dolfinx.dir/common/MPI.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/common/MPI.cpp cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -DDOLFINX_GIT_COMMIT_HASH=\"unknown\" -DUFCX_SIGNATURE=\"197a9717aeffaa1237cff333bbc274ce9c6a92c2\" -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/defines.cpp.o -MF CMakeFiles/dolfinx.dir/common/defines.cpp.o.d -o CMakeFiles/dolfinx.dir/common/defines.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/common/defines.cpp [ 13%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/log.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/Timer.cpp.o -MF CMakeFiles/dolfinx.dir/common/Timer.cpp.o.d -o CMakeFiles/dolfinx.dir/common/Timer.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/common/Timer.cpp cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/log.cpp.o -MF CMakeFiles/dolfinx.dir/common/log.cpp.o.d -o CMakeFiles/dolfinx.dir/common/log.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/common/log.cpp [ 15%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/TimeLogManager.cpp.o [ 18%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/DirichletBC.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/TimeLogger.cpp.o -MF CMakeFiles/dolfinx.dir/common/TimeLogger.cpp.o.d -o CMakeFiles/dolfinx.dir/common/TimeLogger.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/common/TimeLogger.cpp [ 18%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/timing.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/TimeLogManager.cpp.o -MF CMakeFiles/dolfinx.dir/common/TimeLogManager.cpp.o.d -o CMakeFiles/dolfinx.dir/common/TimeLogManager.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/common/TimeLogManager.cpp cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/timing.cpp.o -MF CMakeFiles/dolfinx.dir/common/timing.cpp.o.d -o CMakeFiles/dolfinx.dir/common/timing.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/common/timing.cpp cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/DirichletBC.cpp.o -MF CMakeFiles/dolfinx.dir/fem/DirichletBC.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/DirichletBC.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/fem/DirichletBC.cpp [ 20%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/CoordinateElement.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/CoordinateElement.cpp.o -MF CMakeFiles/dolfinx.dir/fem/CoordinateElement.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/CoordinateElement.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/fem/CoordinateElement.cpp [ 22%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/DofMap.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/DofMap.cpp.o -MF CMakeFiles/dolfinx.dir/fem/DofMap.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/DofMap.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/fem/DofMap.cpp [ 24%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/ElementDofLayout.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/ElementDofLayout.cpp.o -MF CMakeFiles/dolfinx.dir/fem/ElementDofLayout.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/ElementDofLayout.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/fem/ElementDofLayout.cpp [ 26%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/FiniteElement.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/FiniteElement.cpp.o -MF CMakeFiles/dolfinx.dir/fem/FiniteElement.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/FiniteElement.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/fem/FiniteElement.cpp [ 28%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/FunctionSpace.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/FunctionSpace.cpp.o -MF CMakeFiles/dolfinx.dir/fem/FunctionSpace.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/FunctionSpace.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/fem/FunctionSpace.cpp [ 30%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/dofmapbuilder.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/dofmapbuilder.cpp.o -MF CMakeFiles/dolfinx.dir/fem/dofmapbuilder.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/dofmapbuilder.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/fem/dofmapbuilder.cpp [ 32%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/interpolate.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/interpolate.cpp.o -MF CMakeFiles/dolfinx.dir/fem/interpolate.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/interpolate.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/fem/interpolate.cpp [ 33%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/petsc.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/petsc.cpp.o -MF CMakeFiles/dolfinx.dir/fem/petsc.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/petsc.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/fem/petsc.cpp [ 35%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/sparsitybuild.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/sparsitybuild.cpp.o -MF CMakeFiles/dolfinx.dir/fem/sparsitybuild.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/sparsitybuild.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/fem/sparsitybuild.cpp [ 37%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/utils.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/utils.cpp.o -MF CMakeFiles/dolfinx.dir/fem/utils.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/utils.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/fem/utils.cpp [ 39%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/geometry/BoundingBoxTree.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/geometry/BoundingBoxTree.cpp.o -MF CMakeFiles/dolfinx.dir/geometry/BoundingBoxTree.cpp.o.d -o CMakeFiles/dolfinx.dir/geometry/BoundingBoxTree.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/geometry/BoundingBoxTree.cpp [ 41%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/geometry/gjk.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/geometry/gjk.cpp.o -MF CMakeFiles/dolfinx.dir/geometry/gjk.cpp.o.d -o CMakeFiles/dolfinx.dir/geometry/gjk.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/geometry/gjk.cpp [ 43%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/geometry/utils.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/geometry/utils.cpp.o -MF CMakeFiles/dolfinx.dir/geometry/utils.cpp.o.d -o CMakeFiles/dolfinx.dir/geometry/utils.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/geometry/utils.cpp [ 45%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/graph/ordering.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/graph/ordering.cpp.o -MF CMakeFiles/dolfinx.dir/graph/ordering.cpp.o.d -o CMakeFiles/dolfinx.dir/graph/ordering.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/graph/ordering.cpp [ 47%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/graph/partitioners.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/graph/partitioners.cpp.o -MF CMakeFiles/dolfinx.dir/graph/partitioners.cpp.o.d -o CMakeFiles/dolfinx.dir/graph/partitioners.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/graph/partitioners.cpp [ 49%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/graph/partition.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/graph/partition.cpp.o -MF CMakeFiles/dolfinx.dir/graph/partition.cpp.o.d -o CMakeFiles/dolfinx.dir/graph/partition.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/graph/partition.cpp [ 50%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/ADIOS2Writers.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/ADIOS2Writers.cpp.o -MF CMakeFiles/dolfinx.dir/io/ADIOS2Writers.cpp.o.d -o CMakeFiles/dolfinx.dir/io/ADIOS2Writers.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/io/ADIOS2Writers.cpp [ 52%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/cells.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/cells.cpp.o -MF CMakeFiles/dolfinx.dir/io/cells.cpp.o.d -o CMakeFiles/dolfinx.dir/io/cells.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/io/cells.cpp [ 54%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o -MF CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o.d -o CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/io/HDF5Interface.cpp [ 56%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/pugixml.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/pugixml.cpp.o -MF CMakeFiles/dolfinx.dir/io/pugixml.cpp.o.d -o CMakeFiles/dolfinx.dir/io/pugixml.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/io/pugixml.cpp [ 58%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/VTKFile.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/VTKFile.cpp.o -MF CMakeFiles/dolfinx.dir/io/VTKFile.cpp.o.d -o CMakeFiles/dolfinx.dir/io/VTKFile.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/io/VTKFile.cpp [ 60%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/vtk_utils.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/vtk_utils.cpp.o -MF CMakeFiles/dolfinx.dir/io/vtk_utils.cpp.o.d -o CMakeFiles/dolfinx.dir/io/vtk_utils.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/io/vtk_utils.cpp [ 62%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/XDMFFile.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/XDMFFile.cpp.o -MF CMakeFiles/dolfinx.dir/io/XDMFFile.cpp.o.d -o CMakeFiles/dolfinx.dir/io/XDMFFile.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/io/XDMFFile.cpp [ 64%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/xdmf_function.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/xdmf_function.cpp.o -MF CMakeFiles/dolfinx.dir/io/xdmf_function.cpp.o.d -o CMakeFiles/dolfinx.dir/io/xdmf_function.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/io/xdmf_function.cpp [ 66%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/xdmf_mesh.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/xdmf_mesh.cpp.o -MF CMakeFiles/dolfinx.dir/io/xdmf_mesh.cpp.o.d -o CMakeFiles/dolfinx.dir/io/xdmf_mesh.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/io/xdmf_mesh.cpp [ 67%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/xdmf_utils.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/xdmf_utils.cpp.o -MF CMakeFiles/dolfinx.dir/io/xdmf_utils.cpp.o.d -o CMakeFiles/dolfinx.dir/io/xdmf_utils.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/io/xdmf_utils.cpp [ 69%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/la/SparsityPattern.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/la/SparsityPattern.cpp.o -MF CMakeFiles/dolfinx.dir/la/SparsityPattern.cpp.o.d -o CMakeFiles/dolfinx.dir/la/SparsityPattern.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/la/SparsityPattern.cpp [ 71%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/la/petsc.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/la/petsc.cpp.o -MF CMakeFiles/dolfinx.dir/la/petsc.cpp.o.d -o CMakeFiles/dolfinx.dir/la/petsc.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/la/petsc.cpp [ 73%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/la/slepc.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/la/slepc.cpp.o -MF CMakeFiles/dolfinx.dir/la/slepc.cpp.o.d -o CMakeFiles/dolfinx.dir/la/slepc.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/la/slepc.cpp [ 75%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/Mesh.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/Mesh.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/Mesh.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/Mesh.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/mesh/Mesh.cpp [ 77%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/Geometry.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/Geometry.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/Geometry.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/Geometry.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/mesh/Geometry.cpp [ 79%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/Topology.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/Topology.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/Topology.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/Topology.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/mesh/Topology.cpp [ 81%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/cell_types.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/cell_types.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/cell_types.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/cell_types.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/mesh/cell_types.cpp [ 83%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/generation.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/generation.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/generation.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/generation.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/mesh/generation.cpp [ 84%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/mesh/graphbuild.cpp [ 86%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/permutationcomputation.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/permutationcomputation.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/permutationcomputation.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/permutationcomputation.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/mesh/permutationcomputation.cpp [ 88%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/topologycomputation.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/topologycomputation.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/topologycomputation.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/topologycomputation.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/mesh/topologycomputation.cpp [ 90%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o -MF CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o.d -o CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/nls/NewtonSolver.cpp [ 92%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/utils.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/utils.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/utils.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/utils.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/mesh/utils.cpp [ 94%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o -MF CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o.d -o CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/refinement/plaza.cpp [ 96%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/refinement/refine.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/refinement/refine.cpp.o -MF CMakeFiles/dolfinx.dir/refinement/refine.cpp.o.d -o CMakeFiles/dolfinx.dir/refinement/refine.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/refinement/refine.cpp [ 98%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/refinement/utils.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/refinement/utils.cpp.o -MF CMakeFiles/dolfinx.dir/refinement/utils.cpp.o.d -o CMakeFiles/dolfinx.dir/refinement/utils.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/refinement/utils.cpp [100%] Linking CXX shared library libdolfinx_real.so cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/cmake -E cmake_link_script CMakeFiles/dolfinx.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -pthread -Wl,-z,relro -shared -Wl,-soname,libdolfinx_real.so.0.4 -o libdolfinx_real.so.0.4.1 CMakeFiles/dolfinx.dir/common/defines.cpp.o CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o CMakeFiles/dolfinx.dir/common/log.cpp.o CMakeFiles/dolfinx.dir/common/MPI.cpp.o CMakeFiles/dolfinx.dir/common/Table.cpp.o CMakeFiles/dolfinx.dir/common/Timer.cpp.o CMakeFiles/dolfinx.dir/common/TimeLogger.cpp.o CMakeFiles/dolfinx.dir/common/TimeLogManager.cpp.o CMakeFiles/dolfinx.dir/common/timing.cpp.o CMakeFiles/dolfinx.dir/fem/DirichletBC.cpp.o CMakeFiles/dolfinx.dir/fem/CoordinateElement.cpp.o CMakeFiles/dolfinx.dir/fem/DofMap.cpp.o CMakeFiles/dolfinx.dir/fem/ElementDofLayout.cpp.o CMakeFiles/dolfinx.dir/fem/FiniteElement.cpp.o CMakeFiles/dolfinx.dir/fem/FunctionSpace.cpp.o CMakeFiles/dolfinx.dir/fem/dofmapbuilder.cpp.o CMakeFiles/dolfinx.dir/fem/interpolate.cpp.o CMakeFiles/dolfinx.dir/fem/petsc.cpp.o CMakeFiles/dolfinx.dir/fem/sparsitybuild.cpp.o CMakeFiles/dolfinx.dir/fem/utils.cpp.o CMakeFiles/dolfinx.dir/geometry/BoundingBoxTree.cpp.o CMakeFiles/dolfinx.dir/geometry/gjk.cpp.o CMakeFiles/dolfinx.dir/geometry/utils.cpp.o CMakeFiles/dolfinx.dir/graph/ordering.cpp.o CMakeFiles/dolfinx.dir/graph/partitioners.cpp.o CMakeFiles/dolfinx.dir/graph/partition.cpp.o CMakeFiles/dolfinx.dir/io/ADIOS2Writers.cpp.o CMakeFiles/dolfinx.dir/io/cells.cpp.o CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o CMakeFiles/dolfinx.dir/io/pugixml.cpp.o CMakeFiles/dolfinx.dir/io/VTKFile.cpp.o CMakeFiles/dolfinx.dir/io/vtk_utils.cpp.o CMakeFiles/dolfinx.dir/io/XDMFFile.cpp.o CMakeFiles/dolfinx.dir/io/xdmf_function.cpp.o CMakeFiles/dolfinx.dir/io/xdmf_mesh.cpp.o CMakeFiles/dolfinx.dir/io/xdmf_utils.cpp.o CMakeFiles/dolfinx.dir/la/SparsityPattern.cpp.o CMakeFiles/dolfinx.dir/la/petsc.cpp.o CMakeFiles/dolfinx.dir/la/slepc.cpp.o CMakeFiles/dolfinx.dir/mesh/Mesh.cpp.o CMakeFiles/dolfinx.dir/mesh/Geometry.cpp.o CMakeFiles/dolfinx.dir/mesh/Topology.cpp.o CMakeFiles/dolfinx.dir/mesh/cell_types.cpp.o CMakeFiles/dolfinx.dir/mesh/generation.cpp.o CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o CMakeFiles/dolfinx.dir/mesh/permutationcomputation.cpp.o CMakeFiles/dolfinx.dir/mesh/topologycomputation.cpp.o CMakeFiles/dolfinx.dir/mesh/utils.cpp.o CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o CMakeFiles/dolfinx.dir/refinement/refine.cpp.o CMakeFiles/dolfinx.dir/refinement/utils.cpp.o /usr/lib/x86_64-linux-gnu/libbasix.so.0.4.2 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.74.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libptscotch.so /usr/lib/x86_64-linux-gnu/libscotch.so /usr/lib/x86_64-linux-gnu/libptscotcherr.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/lib/libpetsc_real.so cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/cmake -E cmake_symlink_library libdolfinx_real.so.0.4.1 libdolfinx_real.so.0.4 libdolfinx_real.so make[4]: Leaving directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real' [100%] Built target dolfinx make[3]: Leaving directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real' /usr/bin/cmake -E cmake_progress_start /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real/CMakeFiles 0 make[2]: Leaving directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real' PETSC_DIR=/usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex SLEPC_DIR=/usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex dh_auto_build --builddir=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex cd obj-x86_64-linux-gnu-complex && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex' /usr/bin/cmake -S/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -B/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/CMakeFiles /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex' make -f dolfinx/CMakeFiles/dolfinx.dir/build.make dolfinx/CMakeFiles/dolfinx.dir/depend make[4]: Entering directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex' cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx/CMakeFiles/dolfinx.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex' make -f dolfinx/CMakeFiles/dolfinx.dir/build.make dolfinx/CMakeFiles/dolfinx.dir/build make[4]: Entering directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex' [ 1%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o [ 3%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/Table.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o -MF CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o.d -o CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/common/IndexMap.cpp [ 5%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/log.cpp.o [ 7%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/TimeLogger.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/log.cpp.o -MF CMakeFiles/dolfinx.dir/common/log.cpp.o.d -o CMakeFiles/dolfinx.dir/common/log.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/common/log.cpp [ 9%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/MPI.cpp.o [ 11%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/defines.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/MPI.cpp.o -MF CMakeFiles/dolfinx.dir/common/MPI.cpp.o.d -o CMakeFiles/dolfinx.dir/common/MPI.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/common/MPI.cpp [ 13%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/TimeLogManager.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -DDOLFINX_GIT_COMMIT_HASH=\"unknown\" -DUFCX_SIGNATURE=\"197a9717aeffaa1237cff333bbc274ce9c6a92c2\" -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/defines.cpp.o -MF CMakeFiles/dolfinx.dir/common/defines.cpp.o.d -o CMakeFiles/dolfinx.dir/common/defines.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/common/defines.cpp cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/Table.cpp.o -MF CMakeFiles/dolfinx.dir/common/Table.cpp.o.d -o CMakeFiles/dolfinx.dir/common/Table.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/common/Table.cpp cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/TimeLogger.cpp.o -MF CMakeFiles/dolfinx.dir/common/TimeLogger.cpp.o.d -o CMakeFiles/dolfinx.dir/common/TimeLogger.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/common/TimeLogger.cpp [ 15%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/Timer.cpp.o [ 16%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/timing.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/Timer.cpp.o -MF CMakeFiles/dolfinx.dir/common/Timer.cpp.o.d -o CMakeFiles/dolfinx.dir/common/Timer.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/common/Timer.cpp [ 18%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/DirichletBC.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/TimeLogManager.cpp.o -MF CMakeFiles/dolfinx.dir/common/TimeLogManager.cpp.o.d -o CMakeFiles/dolfinx.dir/common/TimeLogManager.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/common/TimeLogManager.cpp cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/timing.cpp.o -MF CMakeFiles/dolfinx.dir/common/timing.cpp.o.d -o CMakeFiles/dolfinx.dir/common/timing.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/common/timing.cpp cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/DirichletBC.cpp.o -MF CMakeFiles/dolfinx.dir/fem/DirichletBC.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/DirichletBC.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/fem/DirichletBC.cpp [ 20%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/CoordinateElement.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/CoordinateElement.cpp.o -MF CMakeFiles/dolfinx.dir/fem/CoordinateElement.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/CoordinateElement.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/fem/CoordinateElement.cpp [ 22%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/DofMap.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/DofMap.cpp.o -MF CMakeFiles/dolfinx.dir/fem/DofMap.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/DofMap.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/fem/DofMap.cpp [ 24%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/ElementDofLayout.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/ElementDofLayout.cpp.o -MF CMakeFiles/dolfinx.dir/fem/ElementDofLayout.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/ElementDofLayout.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/fem/ElementDofLayout.cpp [ 26%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/FiniteElement.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/FiniteElement.cpp.o -MF CMakeFiles/dolfinx.dir/fem/FiniteElement.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/FiniteElement.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/fem/FiniteElement.cpp [ 28%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/FunctionSpace.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/FunctionSpace.cpp.o -MF CMakeFiles/dolfinx.dir/fem/FunctionSpace.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/FunctionSpace.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/fem/FunctionSpace.cpp [ 30%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/dofmapbuilder.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/dofmapbuilder.cpp.o -MF CMakeFiles/dolfinx.dir/fem/dofmapbuilder.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/dofmapbuilder.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/fem/dofmapbuilder.cpp [ 32%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/interpolate.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/interpolate.cpp.o -MF CMakeFiles/dolfinx.dir/fem/interpolate.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/interpolate.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/fem/interpolate.cpp [ 33%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/petsc.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/petsc.cpp.o -MF CMakeFiles/dolfinx.dir/fem/petsc.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/petsc.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/fem/petsc.cpp [ 35%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/sparsitybuild.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/sparsitybuild.cpp.o -MF CMakeFiles/dolfinx.dir/fem/sparsitybuild.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/sparsitybuild.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/fem/sparsitybuild.cpp [ 37%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/utils.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/utils.cpp.o -MF CMakeFiles/dolfinx.dir/fem/utils.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/utils.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/fem/utils.cpp [ 39%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/geometry/BoundingBoxTree.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/geometry/BoundingBoxTree.cpp.o -MF CMakeFiles/dolfinx.dir/geometry/BoundingBoxTree.cpp.o.d -o CMakeFiles/dolfinx.dir/geometry/BoundingBoxTree.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/geometry/BoundingBoxTree.cpp [ 41%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/geometry/gjk.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/geometry/gjk.cpp.o -MF CMakeFiles/dolfinx.dir/geometry/gjk.cpp.o.d -o CMakeFiles/dolfinx.dir/geometry/gjk.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/geometry/gjk.cpp [ 43%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/geometry/utils.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/geometry/utils.cpp.o -MF CMakeFiles/dolfinx.dir/geometry/utils.cpp.o.d -o CMakeFiles/dolfinx.dir/geometry/utils.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/geometry/utils.cpp [ 45%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/graph/ordering.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/graph/ordering.cpp.o -MF CMakeFiles/dolfinx.dir/graph/ordering.cpp.o.d -o CMakeFiles/dolfinx.dir/graph/ordering.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/graph/ordering.cpp [ 47%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/graph/partitioners.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/graph/partitioners.cpp.o -MF CMakeFiles/dolfinx.dir/graph/partitioners.cpp.o.d -o CMakeFiles/dolfinx.dir/graph/partitioners.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/graph/partitioners.cpp [ 49%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/graph/partition.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/graph/partition.cpp.o -MF CMakeFiles/dolfinx.dir/graph/partition.cpp.o.d -o CMakeFiles/dolfinx.dir/graph/partition.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/graph/partition.cpp [ 50%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/ADIOS2Writers.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/ADIOS2Writers.cpp.o -MF CMakeFiles/dolfinx.dir/io/ADIOS2Writers.cpp.o.d -o CMakeFiles/dolfinx.dir/io/ADIOS2Writers.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/io/ADIOS2Writers.cpp [ 52%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/cells.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/cells.cpp.o -MF CMakeFiles/dolfinx.dir/io/cells.cpp.o.d -o CMakeFiles/dolfinx.dir/io/cells.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/io/cells.cpp [ 54%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o -MF CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o.d -o CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/io/HDF5Interface.cpp [ 56%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/pugixml.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/pugixml.cpp.o -MF CMakeFiles/dolfinx.dir/io/pugixml.cpp.o.d -o CMakeFiles/dolfinx.dir/io/pugixml.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/io/pugixml.cpp [ 58%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/VTKFile.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/VTKFile.cpp.o -MF CMakeFiles/dolfinx.dir/io/VTKFile.cpp.o.d -o CMakeFiles/dolfinx.dir/io/VTKFile.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/io/VTKFile.cpp [ 60%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/vtk_utils.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/vtk_utils.cpp.o -MF CMakeFiles/dolfinx.dir/io/vtk_utils.cpp.o.d -o CMakeFiles/dolfinx.dir/io/vtk_utils.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/io/vtk_utils.cpp [ 62%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/XDMFFile.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/XDMFFile.cpp.o -MF CMakeFiles/dolfinx.dir/io/XDMFFile.cpp.o.d -o CMakeFiles/dolfinx.dir/io/XDMFFile.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/io/XDMFFile.cpp [ 64%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/xdmf_function.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/xdmf_function.cpp.o -MF CMakeFiles/dolfinx.dir/io/xdmf_function.cpp.o.d -o CMakeFiles/dolfinx.dir/io/xdmf_function.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/io/xdmf_function.cpp [ 66%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/xdmf_mesh.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/xdmf_mesh.cpp.o -MF CMakeFiles/dolfinx.dir/io/xdmf_mesh.cpp.o.d -o CMakeFiles/dolfinx.dir/io/xdmf_mesh.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/io/xdmf_mesh.cpp [ 67%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/xdmf_utils.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/xdmf_utils.cpp.o -MF CMakeFiles/dolfinx.dir/io/xdmf_utils.cpp.o.d -o CMakeFiles/dolfinx.dir/io/xdmf_utils.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/io/xdmf_utils.cpp [ 69%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/la/SparsityPattern.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/la/SparsityPattern.cpp.o -MF CMakeFiles/dolfinx.dir/la/SparsityPattern.cpp.o.d -o CMakeFiles/dolfinx.dir/la/SparsityPattern.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/la/SparsityPattern.cpp [ 71%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/la/petsc.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/la/petsc.cpp.o -MF CMakeFiles/dolfinx.dir/la/petsc.cpp.o.d -o CMakeFiles/dolfinx.dir/la/petsc.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/la/petsc.cpp [ 73%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/la/slepc.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/la/slepc.cpp.o -MF CMakeFiles/dolfinx.dir/la/slepc.cpp.o.d -o CMakeFiles/dolfinx.dir/la/slepc.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/la/slepc.cpp [ 75%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/Mesh.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/Mesh.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/Mesh.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/Mesh.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/mesh/Mesh.cpp [ 77%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/Geometry.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/Geometry.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/Geometry.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/Geometry.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/mesh/Geometry.cpp [ 79%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/Topology.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/Topology.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/Topology.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/Topology.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/mesh/Topology.cpp [ 81%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/cell_types.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/cell_types.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/cell_types.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/cell_types.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/mesh/cell_types.cpp [ 83%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/generation.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/generation.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/generation.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/generation.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/mesh/generation.cpp [ 84%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/mesh/graphbuild.cpp [ 86%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/permutationcomputation.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/permutationcomputation.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/permutationcomputation.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/permutationcomputation.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/mesh/permutationcomputation.cpp [ 88%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/topologycomputation.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/topologycomputation.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/topologycomputation.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/topologycomputation.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/mesh/topologycomputation.cpp [ 90%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/utils.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/utils.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/utils.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/utils.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/mesh/utils.cpp [ 92%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o -MF CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o.d -o CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/nls/NewtonSolver.cpp [ 94%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/refinement/refine.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/refinement/refine.cpp.o -MF CMakeFiles/dolfinx.dir/refinement/refine.cpp.o.d -o CMakeFiles/dolfinx.dir/refinement/refine.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/refinement/refine.cpp [ 96%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o -MF CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o.d -o CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/refinement/plaza.cpp [ 98%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/refinement/utils.cpp.o cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -I/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/refinement/utils.cpp.o -MF CMakeFiles/dolfinx.dir/refinement/utils.cpp.o.d -o CMakeFiles/dolfinx.dir/refinement/utils.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp/dolfinx/refinement/utils.cpp [100%] Linking CXX shared library libdolfinx_complex.so cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/cmake -E cmake_link_script CMakeFiles/dolfinx.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -pthread -Wl,-z,relro -shared -Wl,-soname,libdolfinx_complex.so.0.4 -o libdolfinx_complex.so.0.4.1 CMakeFiles/dolfinx.dir/common/defines.cpp.o CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o CMakeFiles/dolfinx.dir/common/log.cpp.o CMakeFiles/dolfinx.dir/common/MPI.cpp.o CMakeFiles/dolfinx.dir/common/Table.cpp.o CMakeFiles/dolfinx.dir/common/Timer.cpp.o CMakeFiles/dolfinx.dir/common/TimeLogger.cpp.o CMakeFiles/dolfinx.dir/common/TimeLogManager.cpp.o CMakeFiles/dolfinx.dir/common/timing.cpp.o CMakeFiles/dolfinx.dir/fem/DirichletBC.cpp.o CMakeFiles/dolfinx.dir/fem/CoordinateElement.cpp.o CMakeFiles/dolfinx.dir/fem/DofMap.cpp.o CMakeFiles/dolfinx.dir/fem/ElementDofLayout.cpp.o CMakeFiles/dolfinx.dir/fem/FiniteElement.cpp.o CMakeFiles/dolfinx.dir/fem/FunctionSpace.cpp.o CMakeFiles/dolfinx.dir/fem/dofmapbuilder.cpp.o CMakeFiles/dolfinx.dir/fem/interpolate.cpp.o CMakeFiles/dolfinx.dir/fem/petsc.cpp.o CMakeFiles/dolfinx.dir/fem/sparsitybuild.cpp.o CMakeFiles/dolfinx.dir/fem/utils.cpp.o CMakeFiles/dolfinx.dir/geometry/BoundingBoxTree.cpp.o CMakeFiles/dolfinx.dir/geometry/gjk.cpp.o CMakeFiles/dolfinx.dir/geometry/utils.cpp.o CMakeFiles/dolfinx.dir/graph/ordering.cpp.o CMakeFiles/dolfinx.dir/graph/partitioners.cpp.o CMakeFiles/dolfinx.dir/graph/partition.cpp.o CMakeFiles/dolfinx.dir/io/ADIOS2Writers.cpp.o CMakeFiles/dolfinx.dir/io/cells.cpp.o CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o CMakeFiles/dolfinx.dir/io/pugixml.cpp.o CMakeFiles/dolfinx.dir/io/VTKFile.cpp.o CMakeFiles/dolfinx.dir/io/vtk_utils.cpp.o CMakeFiles/dolfinx.dir/io/XDMFFile.cpp.o CMakeFiles/dolfinx.dir/io/xdmf_function.cpp.o CMakeFiles/dolfinx.dir/io/xdmf_mesh.cpp.o CMakeFiles/dolfinx.dir/io/xdmf_utils.cpp.o CMakeFiles/dolfinx.dir/la/SparsityPattern.cpp.o CMakeFiles/dolfinx.dir/la/petsc.cpp.o CMakeFiles/dolfinx.dir/la/slepc.cpp.o CMakeFiles/dolfinx.dir/mesh/Mesh.cpp.o CMakeFiles/dolfinx.dir/mesh/Geometry.cpp.o CMakeFiles/dolfinx.dir/mesh/Topology.cpp.o CMakeFiles/dolfinx.dir/mesh/cell_types.cpp.o CMakeFiles/dolfinx.dir/mesh/generation.cpp.o CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o CMakeFiles/dolfinx.dir/mesh/permutationcomputation.cpp.o CMakeFiles/dolfinx.dir/mesh/topologycomputation.cpp.o CMakeFiles/dolfinx.dir/mesh/utils.cpp.o CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o CMakeFiles/dolfinx.dir/refinement/refine.cpp.o CMakeFiles/dolfinx.dir/refinement/utils.cpp.o /usr/lib/x86_64-linux-gnu/libbasix.so.0.4.2 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.74.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libptscotch.so /usr/lib/x86_64-linux-gnu/libscotch.so /usr/lib/x86_64-linux-gnu/libptscotcherr.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/lib/libslepc_complex.so /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/lib/libpetsc_complex.so cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/cmake -E cmake_symlink_library libdolfinx_complex.so.0.4.1 libdolfinx_complex.so.0.4 libdolfinx_complex.so make[4]: Leaving directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex' [100%] Built target dolfinx make[3]: Leaving directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex' /usr/bin/cmake -E cmake_progress_start /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex/CMakeFiles 0 make[2]: Leaving directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex' make[1]: Leaving directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1' dh: command-omitted: The call to "debian/rules override_dh_auto_test-arch" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch py3versions: no X-Python3-Version in control file, using supported versions dh binary-arch --buildsystem=cmake --with python3,sphinxdoc dh_testroot -a -O--buildsystem=cmake dh_prep -a -O--buildsystem=cmake debian/rules override_dh_auto_install-arch make[1]: Entering directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1' py3versions: no X-Python3-Version in control file, using supported versions dh_auto_install --builddir=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real --destdir=debian/tmp-real cd obj-x86_64-linux-gnu-real && make -j10 install DESTDIR=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real' /usr/bin/cmake -S/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -B/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RelWithDebInfo" -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.4.1 -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.4 -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXTargets.cmake -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXTargets-relwithdebinfo.cmake -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/common/defines.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/common/dolfin_common.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/common/dolfin_doc.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/common/IndexMap.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/common/log.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/common/loguru.hpp -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/common/sort.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/common/math.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/common/MPI.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/common/Table.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/common/Timer.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/common/TimeLogger.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/common/TimeLogManager.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/common/timing.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/common/utils.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/fem/Constant.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/fem/CoordinateElement.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/fem/DirichletBC.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/fem/DofMap.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/fem/ElementDofLayout.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/fem/Expression.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/fem/FiniteElement.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/fem/Form.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/fem/Function.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/fem/FunctionSpace.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/fem/assembler.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/fem/assemble_matrix_impl.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/fem/assemble_scalar_impl.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/fem/assemble_vector_impl.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/fem/discreteoperators.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/fem/dofmapbuilder.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/fem/dolfin_fem.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/fem/interpolate.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/fem/petsc.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/fem/sparsitybuild.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/fem/utils.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/geometry/BoundingBoxTree.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/geometry/gjk.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/geometry/dolfin_geometry.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/geometry/utils.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/graph/AdjacencyList.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/graph/dolfin_graph.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/graph/ordering.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/graph/partitioners.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/graph/partition.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/io/dolfin_io.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/io/ADIOS2Writers.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/io/cells.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/io/HDF5Interface.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/io/pugiconfig.hpp -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/io/pugixml.hpp -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/io/vtk_utils.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/io/VTKFile.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/io/XDMFFile.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/io/xdmf_function.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/io/xdmf_mesh.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/io/xdmf_meshtags.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/io/xdmf_read.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/io/xdmf_utils.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/la/dolfin_la.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/la/MatrixCSR.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/la/SparsityPattern.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/la/Vector.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/la/petsc.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/la/utils.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/la/slepc.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/mesh/dolfin_mesh.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/mesh/Mesh.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/mesh/Geometry.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/mesh/Topology.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/mesh/MeshTags.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/mesh/cell_types.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/mesh/generation.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/mesh/graphbuild.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/mesh/permutationcomputation.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/mesh/topologycomputation.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/mesh/utils.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/nls/dolfin_nls.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/nls/NewtonSolver.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/refinement/dolfin_refinement.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/refinement/plaza.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/refinement/refine.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/refinement/utils.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include/dolfinx/common/version.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfig.cmake -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfigVersion.cmake -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/x86_64-linux-gnu/pkgconfig/dolfinx_real.pc -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/x86_64-linux-gnu/dolfinx/dolfinx.conf -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/share/dolfinx/demo -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/share/dolfinx/demo/CMakeLists.txt -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/share/dolfinx/demo/hyperelasticity -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/share/dolfinx/demo/hyperelasticity/CMakeLists.txt -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/share/dolfinx/demo/hyperelasticity/hyperelasticity.py -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/share/dolfinx/demo/hyperelasticity/main.cpp -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/share/dolfinx/demo/interpolation-io -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/share/dolfinx/demo/interpolation-io/CMakeLists.txt -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/share/dolfinx/demo/interpolation-io/main.cpp -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/share/dolfinx/demo/poisson -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/share/dolfinx/demo/poisson/CMakeLists.txt -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/share/dolfinx/demo/poisson/main.cpp -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/share/dolfinx/demo/poisson/poisson.py -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/share/dolfinx/demo/poisson_matrix_free -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/share/dolfinx/demo/poisson_matrix_free/CMakeLists.txt -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/share/dolfinx/demo/poisson_matrix_free/main.cpp -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/share/dolfinx/demo/poisson_matrix_free/poisson.py ---------------------------------------------------------------------------- DOLFINx has now been installed in /usr and demo programs have been installed in /usr/share/dolfinx/demo Don't forget to update your environment variables. This can be done easily using the helper file 'dolfinx.conf' which sets the appropriate variables (for users of the Bash shell). To update your environment variables, run the following command: source /usr/lib/x86_64-linux-gnu/dolfinx/dolfinx.conf ---------------------------------------------------------------------------- make[2]: Leaving directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-real' for build in real; do \ for v in python3.10; do \ cd python; \ PATH=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-${build}/usr/bin:$PATH \ PETSC_DIR=/usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-${build} SLEPC_DIR=/usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-${build} \ CXXFLAGS="-g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-${build}/usr/include" \ VERBOSE=1 \ $v setup.py build --build-base=build-${build} install --root=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-${build} --install-layout=deb; \ cd ..; \ done; \ done running build running build_py creating build-real creating build-real/lib.linux-x86_64-3.10 creating build-real/lib.linux-x86_64-3.10/dolfinx copying dolfinx/__init__.py -> build-real/lib.linux-x86_64-3.10/dolfinx copying dolfinx/common.py -> build-real/lib.linux-x86_64-3.10/dolfinx copying dolfinx/geometry.py -> build-real/lib.linux-x86_64-3.10/dolfinx copying dolfinx/graph.py -> build-real/lib.linux-x86_64-3.10/dolfinx copying dolfinx/io.py -> build-real/lib.linux-x86_64-3.10/dolfinx copying dolfinx/jit.py -> build-real/lib.linux-x86_64-3.10/dolfinx copying dolfinx/la.py -> build-real/lib.linux-x86_64-3.10/dolfinx copying dolfinx/log.py -> build-real/lib.linux-x86_64-3.10/dolfinx copying dolfinx/mesh.py -> build-real/lib.linux-x86_64-3.10/dolfinx copying dolfinx/pkgconfig.py -> build-real/lib.linux-x86_64-3.10/dolfinx copying dolfinx/plot.py -> build-real/lib.linux-x86_64-3.10/dolfinx creating build-real/lib.linux-x86_64-3.10/dolfinx/fem copying dolfinx/fem/__init__.py -> build-real/lib.linux-x86_64-3.10/dolfinx/fem copying dolfinx/fem/assemble.py -> build-real/lib.linux-x86_64-3.10/dolfinx/fem copying dolfinx/fem/bcs.py -> build-real/lib.linux-x86_64-3.10/dolfinx/fem copying dolfinx/fem/dofmap.py -> build-real/lib.linux-x86_64-3.10/dolfinx/fem copying dolfinx/fem/formmanipulations.py -> build-real/lib.linux-x86_64-3.10/dolfinx/fem copying dolfinx/fem/forms.py -> build-real/lib.linux-x86_64-3.10/dolfinx/fem copying dolfinx/fem/function.py -> build-real/lib.linux-x86_64-3.10/dolfinx/fem copying dolfinx/fem/petsc.py -> build-real/lib.linux-x86_64-3.10/dolfinx/fem creating build-real/lib.linux-x86_64-3.10/dolfinx/nls copying dolfinx/nls/__init__.py -> build-real/lib.linux-x86_64-3.10/dolfinx/nls copying dolfinx/nls/petsc.py -> build-real/lib.linux-x86_64-3.10/dolfinx/nls creating build-real/lib.linux-x86_64-3.10/dolfinx/wrappers copying dolfinx/wrappers/__init__.py -> build-real/lib.linux-x86_64-3.10/dolfinx/wrappers copying dolfinx/wrappers/MPICommWrapper.h -> build-real/lib.linux-x86_64-3.10/dolfinx/wrappers copying dolfinx/wrappers/array.h -> build-real/lib.linux-x86_64-3.10/dolfinx/wrappers copying dolfinx/wrappers/caster_mpi.h -> build-real/lib.linux-x86_64-3.10/dolfinx/wrappers copying dolfinx/wrappers/caster_petsc.h -> build-real/lib.linux-x86_64-3.10/dolfinx/wrappers running build_ext Re-run cmake no build system arguments -- The C compiler identification is GNU 12.1.0 -- The CXX compiler identification is GNU 12.1.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Python3: /usr/bin/python3.10 (found version "3.10.5") found components: Interpreter Development.Module -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/lib/python3/dist-packages/pybind11/include (found version "2.9.2") -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- Performing Test arch_native_supported -- Performing Test arch_native_supported - Success -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found Boost 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer;filesystem -- Found boost_headers 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.74.0 -- Found boost_timer 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.74.0 -- [x] libboost_timer.so.1.74.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: chrono;headers -- Found boost_chrono 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_chrono-1.74.0 -- [x] libboost_chrono.so.1.74.0 -- [ ] libboost_chrono.a -- Adding boost_chrono dependencies: headers -- Found boost_filesystem 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_filesystem-1.74.0 -- [x] libboost_filesystem.so.1.74.0 -- [ ] libboost_filesystem.a -- Adding boost_filesystem dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70") found components: timer filesystem -- Found Python3: /usr/bin/python3.10 (found version "3.10.5") found components: Interpreter -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.7") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Checking for one of the modules 'PETSc;petsc' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- Checking for one of the modules 'SLEPc;slepc' -- Performing Test HAVE_PEDANTIC -- Performing Test HAVE_PEDANTIC - Success -- Found petsc4py include directory at /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -- Found mpi4py include directory at /usr/lib/python3/dist-packages/mpi4py/include -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: Python3_LIBRARIES -- Build files have been written to: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/build-real/temp.linux-x86_64-3.10 gmake[2]: Entering directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/build-real/temp.linux-x86_64-3.10' /usr/bin/cmake -S/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python -B/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/build-real/temp.linux-x86_64-3.10 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/build-real/temp.linux-x86_64-3.10/CMakeFiles /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/build-real/temp.linux-x86_64-3.10//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[3]: Entering directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/build-real/temp.linux-x86_64-3.10' /usr/bin/gmake -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/depend gmake[4]: Entering directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/build-real/temp.linux-x86_64-3.10' cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/build-real/temp.linux-x86_64-3.10 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/build-real/temp.linux-x86_64-3.10 /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/build-real/temp.linux-x86_64-3.10 /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/build-real/temp.linux-x86_64-3.10/CMakeFiles/cpp.dir/DependInfo.cmake --color= gmake[4]: Leaving directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/build-real/temp.linux-x86_64-3.10' /usr/bin/gmake -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/build gmake[4]: Entering directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/build-real/temp.linux-x86_64-3.10' [ 8%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/common.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.10 -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include -DVERSION_INFO=\"0.4.1\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/common.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/common.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/common.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/dolfinx/wrappers/common.cpp [ 16%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/fem.cpp.o [ 25%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.10 -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include -DVERSION_INFO=\"0.4.1\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/dolfinx/wrappers/dolfinx.cpp /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.10 -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include -DVERSION_INFO=\"0.4.1\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/fem.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/fem.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/fem.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/dolfinx/wrappers/fem.cpp [ 33%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/geometry.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.10 -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include -DVERSION_INFO=\"0.4.1\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/geometry.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/geometry.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/geometry.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/dolfinx/wrappers/geometry.cpp [ 41%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/graph.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.10 -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include -DVERSION_INFO=\"0.4.1\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/graph.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/graph.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/graph.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/dolfinx/wrappers/graph.cpp [ 50%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/io.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.10 -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include -DVERSION_INFO=\"0.4.1\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/io.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/io.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/io.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/dolfinx/wrappers/io.cpp [ 58%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/la.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.10 -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include -DVERSION_INFO=\"0.4.1\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/la.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/la.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/la.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/dolfinx/wrappers/la.cpp [ 66%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/log.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.10 -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include -DVERSION_INFO=\"0.4.1\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/log.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/log.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/log.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/dolfinx/wrappers/log.cpp [ 75%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/mesh.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.10 -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include -DVERSION_INFO=\"0.4.1\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/mesh.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/mesh.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/mesh.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/dolfinx/wrappers/mesh.cpp [ 83%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/nls.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.10 -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include -DVERSION_INFO=\"0.4.1\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/nls.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/nls.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/nls.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/dolfinx/wrappers/nls.cpp [ 91%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.10 -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include -DVERSION_INFO=\"0.4.1\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/dolfinx/wrappers/refinement.cpp [100%] Linking CXX shared module ../lib.linux-x86_64-3.10/dolfinx/cpp.cpython-310-x86_64-linux-gnu.so /usr/bin/cmake -E cmake_link_script CMakeFiles/cpp.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/include -DVERSION_INFO=\"0.4.1\" -O3 -DNDEBUG -flto -pthread -Wl,-z,relro -shared -o ../lib.linux-x86_64-3.10/dolfinx/cpp.cpython-310-x86_64-linux-gnu.so CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/common.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/fem.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/geometry.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/graph.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/io.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/la.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/log.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/mesh.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/nls.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o -Wl,-rpath,/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/lib /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.4.1 /usr/lib/x86_64-linux-gnu/libbasix.so.0.4.2 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/lib/libpetsc_real.so lto-wrapper: warning: using serial compilation of 54 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information /usr/bin/strip /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/build-real/lib.linux-x86_64-3.10/dolfinx/cpp.cpython-310-x86_64-linux-gnu.so gmake[4]: Leaving directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/build-real/temp.linux-x86_64-3.10' [100%] Built target cpp gmake[3]: Leaving directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/build-real/temp.linux-x86_64-3.10' /usr/bin/cmake -E cmake_progress_start /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/build-real/temp.linux-x86_64-3.10/CMakeFiles 0 gmake[2]: Leaving directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/build-real/temp.linux-x86_64-3.10' running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running install_lib creating /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3 creating /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages creating /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx copying build-real/lib.linux-x86_64-3.10/dolfinx/__init__.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx copying build-real/lib.linux-x86_64-3.10/dolfinx/common.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx copying build-real/lib.linux-x86_64-3.10/dolfinx/geometry.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx copying build-real/lib.linux-x86_64-3.10/dolfinx/graph.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx copying build-real/lib.linux-x86_64-3.10/dolfinx/io.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx copying build-real/lib.linux-x86_64-3.10/dolfinx/jit.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx copying build-real/lib.linux-x86_64-3.10/dolfinx/la.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx copying build-real/lib.linux-x86_64-3.10/dolfinx/log.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx copying build-real/lib.linux-x86_64-3.10/dolfinx/mesh.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx copying build-real/lib.linux-x86_64-3.10/dolfinx/pkgconfig.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx copying build-real/lib.linux-x86_64-3.10/dolfinx/plot.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx creating /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem copying build-real/lib.linux-x86_64-3.10/dolfinx/fem/__init__.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem copying build-real/lib.linux-x86_64-3.10/dolfinx/fem/assemble.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem copying build-real/lib.linux-x86_64-3.10/dolfinx/fem/bcs.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem copying build-real/lib.linux-x86_64-3.10/dolfinx/fem/dofmap.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem copying build-real/lib.linux-x86_64-3.10/dolfinx/fem/formmanipulations.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem copying build-real/lib.linux-x86_64-3.10/dolfinx/fem/forms.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem copying build-real/lib.linux-x86_64-3.10/dolfinx/fem/function.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem copying build-real/lib.linux-x86_64-3.10/dolfinx/fem/petsc.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem creating /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/nls copying build-real/lib.linux-x86_64-3.10/dolfinx/nls/__init__.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/nls copying build-real/lib.linux-x86_64-3.10/dolfinx/nls/petsc.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/nls creating /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/wrappers copying build-real/lib.linux-x86_64-3.10/dolfinx/wrappers/__init__.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/wrappers copying build-real/lib.linux-x86_64-3.10/dolfinx/wrappers/MPICommWrapper.h -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/wrappers copying build-real/lib.linux-x86_64-3.10/dolfinx/wrappers/array.h -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/wrappers copying build-real/lib.linux-x86_64-3.10/dolfinx/wrappers/caster_mpi.h -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/wrappers copying build-real/lib.linux-x86_64-3.10/dolfinx/wrappers/caster_petsc.h -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/wrappers copying build-real/lib.linux-x86_64-3.10/dolfinx/cpp.cpython-310-x86_64-linux-gnu.so -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/__init__.py to __init__.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/common.py to common.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/geometry.py to geometry.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/graph.py to graph.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/io.py to io.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/jit.py to jit.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/la.py to la.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/log.py to log.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/mesh.py to mesh.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/pkgconfig.py to pkgconfig.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/plot.py to plot.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem/__init__.py to __init__.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem/assemble.py to assemble.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem/bcs.py to bcs.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem/dofmap.py to dofmap.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem/formmanipulations.py to formmanipulations.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem/forms.py to forms.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem/function.py to function.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem/petsc.py to petsc.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/nls/__init__.py to __init__.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/nls/petsc.py to petsc.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/wrappers/__init__.py to __init__.cpython-310.pyc running install_egg_info running egg_info creating fenics_dolfinx.egg-info writing fenics_dolfinx.egg-info/PKG-INFO writing dependency_links to fenics_dolfinx.egg-info/dependency_links.txt writing requirements to fenics_dolfinx.egg-info/requires.txt writing top-level names to fenics_dolfinx.egg-info/top_level.txt writing manifest file 'fenics_dolfinx.egg-info/SOURCES.txt' reading manifest file 'fenics_dolfinx.egg-info/SOURCES.txt' writing manifest file 'fenics_dolfinx.egg-info/SOURCES.txt' Copying fenics_dolfinx.egg-info to /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-real/usr/lib/python3/dist-packages/fenics_dolfinx-0.4.1.egg-info Skipping SOURCES.txt running install_scripts dh_auto_install -a --builddir=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex --destdir=debian/tmp-complex cd obj-x86_64-linux-gnu-complex && make -j10 install DESTDIR=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex' /usr/bin/cmake -S/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/cpp -B/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RelWithDebInfo" -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.4.1 -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.4 -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXTargets.cmake -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXTargets-relwithdebinfo.cmake -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/common/defines.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/common/dolfin_common.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/common/dolfin_doc.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/common/IndexMap.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/common/log.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/common/loguru.hpp -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/common/sort.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/common/math.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/common/MPI.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/common/Table.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/common/Timer.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/common/TimeLogger.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/common/TimeLogManager.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/common/timing.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/common/utils.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/fem/Constant.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/fem/CoordinateElement.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/fem/DirichletBC.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/fem/DofMap.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/fem/ElementDofLayout.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/fem/Expression.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/fem/FiniteElement.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/fem/Form.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/fem/Function.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/fem/FunctionSpace.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/fem/assembler.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/fem/assemble_matrix_impl.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/fem/assemble_scalar_impl.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/fem/assemble_vector_impl.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/fem/discreteoperators.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/fem/dofmapbuilder.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/fem/dolfin_fem.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/fem/interpolate.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/fem/petsc.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/fem/sparsitybuild.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/fem/utils.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/geometry/BoundingBoxTree.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/geometry/gjk.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/geometry/dolfin_geometry.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/geometry/utils.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/graph/AdjacencyList.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/graph/dolfin_graph.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/graph/ordering.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/graph/partitioners.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/graph/partition.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/io/dolfin_io.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/io/ADIOS2Writers.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/io/cells.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/io/HDF5Interface.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/io/pugiconfig.hpp -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/io/pugixml.hpp -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/io/vtk_utils.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/io/VTKFile.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/io/XDMFFile.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/io/xdmf_function.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/io/xdmf_mesh.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/io/xdmf_meshtags.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/io/xdmf_read.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/io/xdmf_utils.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/la/dolfin_la.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/la/MatrixCSR.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/la/SparsityPattern.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/la/Vector.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/la/petsc.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/la/utils.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/la/slepc.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/mesh/dolfin_mesh.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/mesh/Mesh.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/mesh/Geometry.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/mesh/Topology.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/mesh/MeshTags.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/mesh/cell_types.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/mesh/generation.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/mesh/graphbuild.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/mesh/permutationcomputation.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/mesh/topologycomputation.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/mesh/utils.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/nls/dolfin_nls.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/nls/NewtonSolver.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/refinement/dolfin_refinement.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/refinement/plaza.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/refinement/refine.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/refinement/utils.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include/dolfinx/common/version.h -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfig.cmake -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfigVersion.cmake -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/x86_64-linux-gnu/pkgconfig/dolfinx_complex.pc -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/x86_64-linux-gnu/dolfinx/dolfinx.conf -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/share/dolfinx/demo -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/share/dolfinx/demo/CMakeLists.txt -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/share/dolfinx/demo/hyperelasticity -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/share/dolfinx/demo/hyperelasticity/CMakeLists.txt -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/share/dolfinx/demo/hyperelasticity/hyperelasticity.py -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/share/dolfinx/demo/hyperelasticity/main.cpp -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/share/dolfinx/demo/interpolation-io -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/share/dolfinx/demo/interpolation-io/CMakeLists.txt -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/share/dolfinx/demo/interpolation-io/main.cpp -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/share/dolfinx/demo/poisson -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/share/dolfinx/demo/poisson/CMakeLists.txt -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/share/dolfinx/demo/poisson/main.cpp -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/share/dolfinx/demo/poisson/poisson.py -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/share/dolfinx/demo/poisson_matrix_free -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/share/dolfinx/demo/poisson_matrix_free/CMakeLists.txt -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/share/dolfinx/demo/poisson_matrix_free/main.cpp -- Installing: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/share/dolfinx/demo/poisson_matrix_free/poisson.py ---------------------------------------------------------------------------- DOLFINx has now been installed in /usr and demo programs have been installed in /usr/share/dolfinx/demo Don't forget to update your environment variables. This can be done easily using the helper file 'dolfinx.conf' which sets the appropriate variables (for users of the Bash shell). To update your environment variables, run the following command: source /usr/lib/x86_64-linux-gnu/dolfinx/dolfinx.conf ---------------------------------------------------------------------------- make[2]: Leaving directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-complex' dh_numpy3 -a for build in complex; do \ for v in python3.10; do \ cd python; \ PATH=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-${build}/usr/bin:$PATH \ PETSC_DIR=/usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-${build} SLEPC_DIR=/usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-${build} \ CXXFLAGS="-g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-${build}/usr/include" \ VERBOSE=1 \ $v setup.py build --build-base=build-${build} install --root=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-${build} --install-layout=deb; \ cd ..; \ done; \ done running build running build_py creating build-complex creating build-complex/lib.linux-x86_64-3.10 creating build-complex/lib.linux-x86_64-3.10/dolfinx copying dolfinx/__init__.py -> build-complex/lib.linux-x86_64-3.10/dolfinx copying dolfinx/common.py -> build-complex/lib.linux-x86_64-3.10/dolfinx copying dolfinx/geometry.py -> build-complex/lib.linux-x86_64-3.10/dolfinx copying dolfinx/graph.py -> build-complex/lib.linux-x86_64-3.10/dolfinx copying dolfinx/io.py -> build-complex/lib.linux-x86_64-3.10/dolfinx copying dolfinx/jit.py -> build-complex/lib.linux-x86_64-3.10/dolfinx copying dolfinx/la.py -> build-complex/lib.linux-x86_64-3.10/dolfinx copying dolfinx/log.py -> build-complex/lib.linux-x86_64-3.10/dolfinx copying dolfinx/mesh.py -> build-complex/lib.linux-x86_64-3.10/dolfinx copying dolfinx/pkgconfig.py -> build-complex/lib.linux-x86_64-3.10/dolfinx copying dolfinx/plot.py -> build-complex/lib.linux-x86_64-3.10/dolfinx creating build-complex/lib.linux-x86_64-3.10/dolfinx/fem copying dolfinx/fem/__init__.py -> build-complex/lib.linux-x86_64-3.10/dolfinx/fem copying dolfinx/fem/assemble.py -> build-complex/lib.linux-x86_64-3.10/dolfinx/fem copying dolfinx/fem/bcs.py -> build-complex/lib.linux-x86_64-3.10/dolfinx/fem copying dolfinx/fem/dofmap.py -> build-complex/lib.linux-x86_64-3.10/dolfinx/fem copying dolfinx/fem/formmanipulations.py -> build-complex/lib.linux-x86_64-3.10/dolfinx/fem copying dolfinx/fem/forms.py -> build-complex/lib.linux-x86_64-3.10/dolfinx/fem copying dolfinx/fem/function.py -> build-complex/lib.linux-x86_64-3.10/dolfinx/fem copying dolfinx/fem/petsc.py -> build-complex/lib.linux-x86_64-3.10/dolfinx/fem creating build-complex/lib.linux-x86_64-3.10/dolfinx/nls copying dolfinx/nls/__init__.py -> build-complex/lib.linux-x86_64-3.10/dolfinx/nls copying dolfinx/nls/petsc.py -> build-complex/lib.linux-x86_64-3.10/dolfinx/nls creating build-complex/lib.linux-x86_64-3.10/dolfinx/wrappers copying dolfinx/wrappers/__init__.py -> build-complex/lib.linux-x86_64-3.10/dolfinx/wrappers copying dolfinx/wrappers/MPICommWrapper.h -> build-complex/lib.linux-x86_64-3.10/dolfinx/wrappers copying dolfinx/wrappers/array.h -> build-complex/lib.linux-x86_64-3.10/dolfinx/wrappers copying dolfinx/wrappers/caster_mpi.h -> build-complex/lib.linux-x86_64-3.10/dolfinx/wrappers copying dolfinx/wrappers/caster_petsc.h -> build-complex/lib.linux-x86_64-3.10/dolfinx/wrappers running build_ext Re-run cmake no build system arguments -- The C compiler identification is GNU 12.1.0 -- The CXX compiler identification is GNU 12.1.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Python3: /usr/bin/python3.10 (found version "3.10.5") found components: Interpreter Development.Module -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/lib/python3/dist-packages/pybind11/include (found version "2.9.2") -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- Performing Test arch_native_supported -- Performing Test arch_native_supported - Success -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found Boost 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer;filesystem -- Found boost_headers 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.74.0 -- Found boost_timer 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.74.0 -- [x] libboost_timer.so.1.74.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: chrono;headers -- Found boost_chrono 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_chrono-1.74.0 -- [x] libboost_chrono.so.1.74.0 -- [ ] libboost_chrono.a -- Adding boost_chrono dependencies: headers -- Found boost_filesystem 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_filesystem-1.74.0 -- [x] libboost_filesystem.so.1.74.0 -- [ ] libboost_filesystem.a -- Adding boost_filesystem dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70") found components: timer filesystem -- Found Python3: /usr/bin/python3.10 (found version "3.10.5") found components: Interpreter -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.7") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Checking for one of the modules 'PETSc;petsc' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - found -- Checking for one of the modules 'SLEPc;slepc' -- Performing Test HAVE_PEDANTIC -- Performing Test HAVE_PEDANTIC - Success -- Found petsc4py include directory at /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -- Found mpi4py include directory at /usr/lib/python3/dist-packages/mpi4py/include -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: Python3_LIBRARIES -- Build files have been written to: /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/build-complex/temp.linux-x86_64-3.10 gmake[2]: Entering directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/build-complex/temp.linux-x86_64-3.10' /usr/bin/cmake -S/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python -B/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/build-complex/temp.linux-x86_64-3.10 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/build-complex/temp.linux-x86_64-3.10/CMakeFiles /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/build-complex/temp.linux-x86_64-3.10//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[3]: Entering directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/build-complex/temp.linux-x86_64-3.10' /usr/bin/gmake -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/depend gmake[4]: Entering directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/build-complex/temp.linux-x86_64-3.10' cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/build-complex/temp.linux-x86_64-3.10 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/build-complex/temp.linux-x86_64-3.10 /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/build-complex/temp.linux-x86_64-3.10 /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/build-complex/temp.linux-x86_64-3.10/CMakeFiles/cpp.dir/DependInfo.cmake --color= gmake[4]: Leaving directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/build-complex/temp.linux-x86_64-3.10' /usr/bin/gmake -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/build gmake[4]: Entering directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/build-complex/temp.linux-x86_64-3.10' [ 8%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o [ 16%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/common.cpp.o [ 25%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/fem.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.10 -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include -DVERSION_INFO=\"0.4.1\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/dolfinx/wrappers/dolfinx.cpp /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.10 -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include -DVERSION_INFO=\"0.4.1\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/common.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/common.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/common.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/dolfinx/wrappers/common.cpp /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.10 -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include -DVERSION_INFO=\"0.4.1\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/fem.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/fem.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/fem.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/dolfinx/wrappers/fem.cpp [ 33%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/geometry.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.10 -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include -DVERSION_INFO=\"0.4.1\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/geometry.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/geometry.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/geometry.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/dolfinx/wrappers/geometry.cpp [ 41%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/graph.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.10 -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include -DVERSION_INFO=\"0.4.1\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/graph.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/graph.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/graph.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/dolfinx/wrappers/graph.cpp [ 50%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/io.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.10 -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include -DVERSION_INFO=\"0.4.1\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/io.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/io.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/io.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/dolfinx/wrappers/io.cpp [ 58%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/la.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.10 -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include -DVERSION_INFO=\"0.4.1\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/la.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/la.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/la.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/dolfinx/wrappers/la.cpp [ 66%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/log.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.10 -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include -DVERSION_INFO=\"0.4.1\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/log.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/log.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/log.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/dolfinx/wrappers/log.cpp [ 75%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/mesh.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.10 -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include -DVERSION_INFO=\"0.4.1\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/mesh.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/mesh.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/mesh.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/dolfinx/wrappers/mesh.cpp [ 83%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/nls.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.10 -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include -DVERSION_INFO=\"0.4.1\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/nls.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/nls.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/nls.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/dolfinx/wrappers/nls.cpp [ 91%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.4.1\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.10 -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include -DVERSION_INFO=\"0.4.1\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o -c /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/dolfinx/wrappers/refinement.cpp [100%] Linking CXX shared module ../lib.linux-x86_64-3.10/dolfinx/cpp.cpython-310-x86_64-linux-gnu.so /usr/bin/cmake -E cmake_link_script CMakeFiles/cpp.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/include -DVERSION_INFO=\"0.4.1\" -O3 -DNDEBUG -flto -pthread -Wl,-z,relro -shared -o ../lib.linux-x86_64-3.10/dolfinx/cpp.cpython-310-x86_64-linux-gnu.so CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/common.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/fem.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/geometry.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/graph.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/io.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/la.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/log.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/mesh.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/nls.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o -Wl,-rpath,/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/lib:/usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/lib /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.4.1 /usr/lib/x86_64-linux-gnu/libbasix.so.0.4.2 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-complex/lib/libslepc_complex.so /usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/lib/libpetsc_complex.so lto-wrapper: warning: using serial compilation of 55 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information /usr/bin/strip /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/build-complex/lib.linux-x86_64-3.10/dolfinx/cpp.cpython-310-x86_64-linux-gnu.so gmake[4]: Leaving directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/build-complex/temp.linux-x86_64-3.10' [100%] Built target cpp gmake[3]: Leaving directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/build-complex/temp.linux-x86_64-3.10' /usr/bin/cmake -E cmake_progress_start /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/build-complex/temp.linux-x86_64-3.10/CMakeFiles 0 gmake[2]: Leaving directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/python/build-complex/temp.linux-x86_64-3.10' running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running install_lib creating /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3 creating /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages creating /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx copying build-complex/lib.linux-x86_64-3.10/dolfinx/__init__.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx copying build-complex/lib.linux-x86_64-3.10/dolfinx/common.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx copying build-complex/lib.linux-x86_64-3.10/dolfinx/geometry.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx copying build-complex/lib.linux-x86_64-3.10/dolfinx/graph.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx copying build-complex/lib.linux-x86_64-3.10/dolfinx/io.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx copying build-complex/lib.linux-x86_64-3.10/dolfinx/jit.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx copying build-complex/lib.linux-x86_64-3.10/dolfinx/la.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx copying build-complex/lib.linux-x86_64-3.10/dolfinx/log.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx copying build-complex/lib.linux-x86_64-3.10/dolfinx/mesh.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx copying build-complex/lib.linux-x86_64-3.10/dolfinx/pkgconfig.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx copying build-complex/lib.linux-x86_64-3.10/dolfinx/plot.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx creating /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem copying build-complex/lib.linux-x86_64-3.10/dolfinx/fem/__init__.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem copying build-complex/lib.linux-x86_64-3.10/dolfinx/fem/assemble.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem copying build-complex/lib.linux-x86_64-3.10/dolfinx/fem/bcs.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem copying build-complex/lib.linux-x86_64-3.10/dolfinx/fem/dofmap.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem copying build-complex/lib.linux-x86_64-3.10/dolfinx/fem/formmanipulations.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem copying build-complex/lib.linux-x86_64-3.10/dolfinx/fem/forms.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem copying build-complex/lib.linux-x86_64-3.10/dolfinx/fem/function.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem copying build-complex/lib.linux-x86_64-3.10/dolfinx/fem/petsc.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem creating /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/nls copying build-complex/lib.linux-x86_64-3.10/dolfinx/nls/__init__.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/nls copying build-complex/lib.linux-x86_64-3.10/dolfinx/nls/petsc.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/nls creating /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/wrappers copying build-complex/lib.linux-x86_64-3.10/dolfinx/wrappers/__init__.py -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/wrappers copying build-complex/lib.linux-x86_64-3.10/dolfinx/wrappers/MPICommWrapper.h -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/wrappers copying build-complex/lib.linux-x86_64-3.10/dolfinx/wrappers/array.h -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/wrappers copying build-complex/lib.linux-x86_64-3.10/dolfinx/wrappers/caster_mpi.h -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/wrappers copying build-complex/lib.linux-x86_64-3.10/dolfinx/wrappers/caster_petsc.h -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/wrappers copying build-complex/lib.linux-x86_64-3.10/dolfinx/cpp.cpython-310-x86_64-linux-gnu.so -> /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/__init__.py to __init__.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/common.py to common.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/geometry.py to geometry.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/graph.py to graph.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/io.py to io.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/jit.py to jit.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/la.py to la.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/log.py to log.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/mesh.py to mesh.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/pkgconfig.py to pkgconfig.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/plot.py to plot.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem/__init__.py to __init__.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem/assemble.py to assemble.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem/bcs.py to bcs.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem/dofmap.py to dofmap.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem/formmanipulations.py to formmanipulations.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem/forms.py to forms.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem/function.py to function.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem/petsc.py to petsc.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/nls/__init__.py to __init__.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/nls/petsc.py to petsc.cpython-310.pyc byte-compiling /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/wrappers/__init__.py to __init__.cpython-310.pyc running install_egg_info running egg_info writing fenics_dolfinx.egg-info/PKG-INFO writing dependency_links to fenics_dolfinx.egg-info/dependency_links.txt writing requirements to fenics_dolfinx.egg-info/requires.txt writing top-level names to fenics_dolfinx.egg-info/top_level.txt reading manifest file 'fenics_dolfinx.egg-info/SOURCES.txt' writing manifest file 'fenics_dolfinx.egg-info/SOURCES.txt' Copying fenics_dolfinx.egg-info to /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-complex/usr/lib/python3/dist-packages/fenics_dolfinx-0.4.1.egg-info Skipping SOURCES.txt running install_scripts chrpath -d /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp*/usr/lib/python*/dist-packages/dolfinx/*.so sed -i "s/-D_FORTIFY_SOURCE=2//g" /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp*/usr/lib/x86_64-linux-gnu/pkgconfig/dolfinx*.pc sed -i "s|-DNDEBUG||g" /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp*/usr/lib/x86_64-linux-gnu/pkgconfig/dolfinx*.pc if [ "xno" != "xno" ]; then \ case " mips64el hurd-i386 m68k sh4 " in \ *\ amd64\ *) echo "ALL tests have been disabled on amd64";; \ *) set -e; \ export CTEST_OUTPUT_ON_FAILURE=1; \ for build in real complex; do \ echo "== testing $build number build =="; \ builddir=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/obj-x86_64-linux-gnu-${build}; \ for mytest in test demo; do \ echo "running tests from $mytest for $build build"; \ testdir=${builddir}/${mytest}; \ cd $testdir; \ if [ "x" != "x" ]; then echo "set(CTEST_CUSTOM_TESTS_IGNORE )" >> CTestCustom.cmake; fi; \ PETSC_DIR=/usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-${build} SLEPC_DIR=/usr/lib/slepcdir/slepc3.16/x86_64-linux-gnu-${build} cmake -DCMAKE_MODULE_PATH=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-${build}/usr/lib/x86_64-linux-gnu/cmake/dolfinx \ -DDOLFINX_DIR=/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1/debian/tmp-${build}/usr/lib/x86_64-linux-gnu/cmake/dolfinx \ -DMPIEXEC_PARAMS:STRING="--oversubscribe" \ ${testdir} ; \ make all VERBOSE=1; \ OMPI_ALLOW_RUN_AS_ROOT=1 OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1 make test VERBOSE=1; \ done; \ cd /build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1; \ done; \ esac; \ fi make[1]: Leaving directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1' debian/rules override_dh_install-arch make[1]: Entering directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1' py3versions: no X-Python3-Version in control file, using supported versions dh_install -a sed "s/set(CMAKE_IMPORT_FILE_VERSION 1)/set(CMAKE_IMPORT_FILE_VERSION 1)\n\nif(PETSC_SCALAR_COMPLEX)\n set(LIB_NAME_EXT \"_complex\")\nelse()\n set(LIB_NAME_EXT \"_real\")\nendif()/; \ s/libdolfinx_real.so/libdolfinx\${LIB_NAME_EXT}.so/g" \ -i debian/libdolfinx-dev/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXTargets-relwithdebinfo.cmake make[1]: Leaving directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1' dh_installdocs -a -O--buildsystem=cmake dh_sphinxdoc -a -O--buildsystem=cmake dh_sphinxdoc: warning: Sphinx documentation not found dh_installchangelogs -a -O--buildsystem=cmake debian/rules override_dh_python3-arch make[1]: Entering directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1' py3versions: no X-Python3-Version in control file, using supported versions dh_python3 -a E: dh_python3 pydist:283: more than one package name found for petsc4py dist I: dh_python3 pydist:292: Cannot find package that provides petsc4py. Please add package that provides it to Build-Depends or add "petsc4py python3-petsc4py" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. E: dh_python3 pydist:283: more than one package name found for petsc4py dist I: dh_python3 pydist:292: Cannot find package that provides petsc4py. Please add package that provides it to Build-Depends or add "petsc4py python3-petsc4py" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. dh_numpy3 -a mkdir -p debian/python3-dolfinx-real//usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/lib mv debian/python3-dolfinx-real/usr/lib/python3 debian/python3-dolfinx-real//usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/lib rm -rf debian/python3-dolfinx-real//usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-real/lib/python3/dist-packages/dolfinx_utils mkdir -p debian/python3-dolfinx-complex//usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/lib mv debian/python3-dolfinx-complex/usr/lib/python3 debian/python3-dolfinx-complex//usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/lib rm -rf debian/python3-dolfinx-complex//usr/lib/petscdir/petsc3.16/x86_64-linux-gnu-complex/lib/python3/dist-packages/dolfinx_utils make[1]: Leaving directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1' dh_installsystemduser -a -O--buildsystem=cmake dh_perl -a -O--buildsystem=cmake dh_link -a -O--buildsystem=cmake dh_strip_nondeterminism -a -O--buildsystem=cmake debian/rules override_dh_compress make[1]: Entering directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1' py3versions: no X-Python3-Version in control file, using supported versions dh_compress -X.py -X.cpp -X.h -X.pdf -X.ufl make[1]: Leaving directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1' dh_fixperms -a -O--buildsystem=cmake dh_missing -a -O--buildsystem=cmake debian/rules override_dh_dwz make[1]: Entering directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1' py3versions: no X-Python3-Version in control file, using supported versions dh_dwz -Xcpp.cpython make[1]: Leaving directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1' debian/rules override_dh_strip make[1]: Entering directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1' py3versions: no X-Python3-Version in control file, using supported versions dh_strip --package=libdolfinx-real0.4 -Xcomplex -Xpython dh_strip --package=libdolfinx-complex0.4 -Xreal -Xpython dh_strip --package=python3-dolfinx-real make[1]: Leaving directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1' dh_makeshlibs -a -O--buildsystem=cmake debian/rules override_dh_shlibdeps make[1]: Entering directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1' py3versions: no X-Python3-Version in control file, using supported versions dh_shlibdeps --dpkg-shlibdeps-params=--ignore-missing-info dpkg-shlibdeps: warning: symbol dladdr used by debian/libdolfinx-real0.4/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.4.1 found in none of the libraries dpkg-shlibdeps: warning: symbol dladdr used by debian/libdolfinx-complex0.4/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.4.1 found in none of the libraries make[1]: Leaving directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1' dh_installdeb -a -O--buildsystem=cmake debian/rules override_dh_gencontrol make[1]: Entering directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1' py3versions: no X-Python3-Version in control file, using supported versions echo "python3-petsc4py-real:Depends=python3-petsc4py, python3-slepc4py, python3-petsc4py-real (>= 3.16), python3-petsc4py-real (<< 3.17), python3-slepc4py-real (>= 3.16), python3-slepc4py-real (<< 3.17)" >> debian/python3-dolfinx-real.substvars echo "python3-petsc4py-complex:Depends=python3-petsc4py, python3-slepc4py, python3-petsc4py-complex (>= 3.16), python3-petsc4py-complex (<< 3.17), python3-slepc4py-complex (>= 3.16), python3-slepc4py-complex (<< 3.17)" >> debian/python3-dolfinx-complex.substvars echo "python-petsc4py-alt:Depends=python3-petsc4py, python3-slepc4py, python3-petsc4py-real (>= 3.16), python3-petsc4py-real (<< 3.17), python3-slepc4py-real (>= 3.16), python3-slepc4py-real (<< 3.17)" >> debian/libdolfinx-dev.substvars dh_gencontrol -- -Vpetsc:Depends="libpetsc-real3.16-dev, libslepc-real3.16-dev" -Vpetsc-complex:Depends="libpetsc-complex3.16-dev, libslepc-complex3.16-dev" -Vdolfinx:Next-Upstream-Version=1:0.5~ \ -Vpybind11:Upstream-Version=2.9 -Vpybind11:Next-Upstream-Version=3 \ -Vxtensor:Upstream-Version=0.24.2 -Vxsimd:Upstream-Version=8.1.0 dpkg-gencontrol: warning: package libdolfinx-real-dev: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-complex-dev: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package python3-dolfinx-real: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-dolfinx-real: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-dolfinx-complex: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-dolfinx-complex: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-real0.4: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-dev: substitution variable ${python-petsc4py-alt:Depends} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-dev: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-complex0.4: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-complex0.4: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-real0.4: substitution variable ${python3:Depends} unused, but is defined make[1]: Leaving directory '/build/fenics-dolfinx-nE5s0C/fenics-dolfinx-0.4.1' dh_md5sums -a -O--buildsystem=cmake dh_builddeb -a -O--buildsystem=cmake dpkg-deb: building package 'libdolfinx-real0.4-dbgsym' in '../libdolfinx-real0.4-dbgsym_0.4.1-4+b1_amd64.deb'. dpkg-deb: building package 'libdolfinx-complex0.4-dbgsym' in '../libdolfinx-complex0.4-dbgsym_0.4.1-4+b1_amd64.deb'. dpkg-deb: building package 'libdolfinx-real0.4' in '../libdolfinx-real0.4_0.4.1-4+b1_amd64.deb'. dpkg-deb: building package 'libdolfinx-real-dev' in '../libdolfinx-real-dev_0.4.1-4+b1_amd64.deb'. dpkg-deb: building package 'python3-dolfinx' in '../python3-dolfinx_0.4.1-4+b1_amd64.deb'. dpkg-deb: building package 'libdolfinx-dev' in '../libdolfinx-dev_0.4.1-4+b1_amd64.deb'. dpkg-deb: building package 'libdolfinx-complex-dev' in '../libdolfinx-complex-dev_0.4.1-4+b1_amd64.deb'. dpkg-deb: building package 'libdolfinx-complex0.4' in '../libdolfinx-complex0.4_0.4.1-4+b1_amd64.deb'. dpkg-deb: building package 'python3-dolfinx-real' in '../python3-dolfinx-real_0.4.1-4+b1_amd64.deb'. dpkg-deb: building package 'python3-dolfinx-complex' in '../python3-dolfinx-complex_0.4.1-4+b1_amd64.deb'. dpkg-genbuildinfo --build=any -O../fenics-dolfinx_0.4.1-4+b1_amd64.buildinfo dpkg-genchanges --build=any -O../fenics-dolfinx_0.4.1-4+b1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/fenics-dolfinx-nE5s0C /tmp/fenics-dolfinx-0.4.1-4+b14s78lmqa I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.6c7pfSLEvo... I: success in 1890.1619 seconds md5: libdolfinx-complex-dev_0.4.1-4+b1_amd64.deb: OK md5: libdolfinx-complex0.4-dbgsym_0.4.1-4+b1_amd64.deb: OK md5: libdolfinx-complex0.4_0.4.1-4+b1_amd64.deb: OK md5: libdolfinx-dev_0.4.1-4+b1_amd64.deb: OK md5: libdolfinx-real-dev_0.4.1-4+b1_amd64.deb: OK md5: libdolfinx-real0.4-dbgsym_0.4.1-4+b1_amd64.deb: OK md5: libdolfinx-real0.4_0.4.1-4+b1_amd64.deb: OK md5: python3-dolfinx-complex_0.4.1-4+b1_amd64.deb: OK md5: python3-dolfinx-real_0.4.1-4+b1_amd64.deb: OK md5: python3-dolfinx_0.4.1-4+b1_amd64.deb: OK sha1: libdolfinx-complex-dev_0.4.1-4+b1_amd64.deb: OK sha1: libdolfinx-complex0.4-dbgsym_0.4.1-4+b1_amd64.deb: OK sha1: libdolfinx-complex0.4_0.4.1-4+b1_amd64.deb: OK sha1: libdolfinx-dev_0.4.1-4+b1_amd64.deb: OK sha1: libdolfinx-real-dev_0.4.1-4+b1_amd64.deb: OK sha1: libdolfinx-real0.4-dbgsym_0.4.1-4+b1_amd64.deb: OK sha1: libdolfinx-real0.4_0.4.1-4+b1_amd64.deb: OK sha1: python3-dolfinx-complex_0.4.1-4+b1_amd64.deb: OK sha1: python3-dolfinx-real_0.4.1-4+b1_amd64.deb: OK sha1: python3-dolfinx_0.4.1-4+b1_amd64.deb: OK sha256: libdolfinx-complex-dev_0.4.1-4+b1_amd64.deb: OK sha256: libdolfinx-complex0.4-dbgsym_0.4.1-4+b1_amd64.deb: OK sha256: libdolfinx-complex0.4_0.4.1-4+b1_amd64.deb: OK sha256: libdolfinx-dev_0.4.1-4+b1_amd64.deb: OK sha256: libdolfinx-real-dev_0.4.1-4+b1_amd64.deb: OK sha256: libdolfinx-real0.4-dbgsym_0.4.1-4+b1_amd64.deb: OK sha256: libdolfinx-real0.4_0.4.1-4+b1_amd64.deb: OK sha256: python3-dolfinx-complex_0.4.1-4+b1_amd64.deb: OK sha256: python3-dolfinx-real_0.4.1-4+b1_amd64.deb: OK sha256: python3-dolfinx_0.4.1-4+b1_amd64.deb: OK Checksums: OK