Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/f/fenics-dolfinx/fenics-dolfinx_0.3.0-13_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/fenics-dolfinx-0.3.0-1307_izg61/fenics-dolfinx_0.3.0-13_all.buildinfo Get source package info: fenics-dolfinx=1:0.3.0-13 Source URL: http://snapshot.notset.fr/mr/package/fenics-dolfinx/1:0.3.0-13/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.118 autoconf=2.71-2 automake=1:1.16.5-1.1 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12.2 base-passwd=3.5.52 bash=5.1-6 binutils=2.37.90.20220130-2 binutils-common=2.37.90.20220130-2 binutils-x86-64-linux-gnu=2.37.90.20220130-2 bsdextrautils=2.37.3-1+b1 bsdutils=1:2.37.3-1+b1 build-essential=12.9 bzip2=1.0.8-5 ca-certificates=20211016 catch2=2.13.8-1 chrpath=0.16-2+b1 cmake=3.22.1-1+b1 cmake-data=3.22.1-1 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-16 dash=0.5.11+git20210903+057cd650a4ed-3 debconf=1.5.79 debhelper=13.6 debianutils=5.7-0.1 dh-autoreconf=20 dh-elpa-helper=2.0.10 dh-python=5.20220119 dh-strip-nondeterminism=1.13.0-1 diffutils=1:3.7-5 docutils-common=0.17.1+dfsg-2 doxygen=1.9.1-2 dpkg=1.21.1 dpkg-dev=1.21.1 dwz=0.14-1 emacsen-common=3.0.4 file=1:5.41-2 findutils=4.8.0-1 fontconfig=2.13.1-4.4 fontconfig-config=2.13.1-4.4 fonts-dejavu-core=2.37-2 fonts-font-awesome=5.0.10+really4.7.0~dfsg-4.1 fonts-lato=2.0-2.1 fonts-mathjax=2.7.9+dfsg-1 g++=4:11.2.0-2 g++-11=11.2.0-16 gcc=4:11.2.0-2 gcc-11=11.2.0-16 gcc-11-base=11.2.0-16 gettext=0.21-4 gettext-base=0.21-4 gfortran=4:11.2.0-2 gfortran-11=11.2.0-16 graphviz=2.42.2-5+b1 grep=3.7-1 groff-base=1.22.4-8 gzip=1.10-4 hostname=3.23 ibverbs-providers=39.0-1 icu-devtools=67.1-7 init-system-helpers=1.61 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libaec-dev=1.0.6-1 libaec0=1.0.6-1 libamd2=1:5.10.1+dfsg-4 libann0=1.1.2+doc-7 libarchive-zip-perl=1.68-1 libarchive13=3.5.2-1 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python3-alabaster=0.7.12-1 python3-all=3.9.8-1 python3-all-dev=3.9.8-1 python3-babel=2.8.0+dfsg.1-7 python3-basix=0.3.0-11 python3-certifi=2020.6.20-1 python3-cffi=1.15.0-1 python3-cffi-backend=1.15.0-1+b1 python3-chardet=4.0.0-1 python3-dev=3.9.8-1 python3-distutils=3.9.10-1 python3-docutils=0.17.1+dfsg-2 python3-ffcx=1:0.3.0-3 python3-idna=3.2-2 python3-imagesize=1.3.0-1 python3-jinja2=3.0.1-2 python3-lib2to3=3.9.10-1 python3-markupsafe=2.0.1-2+b1 python3-minimal=3.9.8-1 python3-mpi4py=3.1.3-1 python3-numpy=1:1.21.5-1 python3-packaging=21.3-1 python3-petsc4py=3.15.1-2 python3-petsc4py-complex=3.15.1-2 python3-petsc4py-complex3.15=3.15.1-2+b1 python3-petsc4py-real=3.15.1-2 python3-petsc4py-real3.15=3.15.1-2+b1 python3-pip=22.0.2+dfsg-1 python3-pkg-resources=59.6.0-1.2 python3-ply=3.11-5 python3-pybind11=2.9.0-1 python3-pycparser=2.21-1 python3-pygments=2.10.0+dfsg-1 python3-pyparsing=2.4.7-1 python3-requests=2.25.1+dfsg-2 python3-roman=3.3-1 python3-setuptools=59.6.0-1.2 python3-six=1.16.0-3 python3-slepc4py=3.15.1-2 python3-slepc4py-complex=3.15.1-2 python3-slepc4py-complex3.15=3.15.1-2+b1 python3-slepc4py-real=3.15.1-2 python3-slepc4py-real3.15=3.15.1-2+b1 python3-snowballstemmer=2.2.0-1 python3-sphinx=4.3.2-1 python3-sphinx-rtd-theme=1.0.0+dfsg-1 python3-tz=2021.3-1 python3-ufl=2021.1.0-4 python3-urllib3=1.26.5-1~exp1 python3-wheel=0.37.1-2 python3.10=3.10.2-1 python3.10-dev=3.10.2-1 python3.10-minimal=3.10.2-1 python3.9=3.9.10-1 python3.9-dev=3.9.10-1 python3.9-minimal=3.9.10-1 readline-common=8.1.2-1 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sgml-base=1.30 sphinx-common=4.3.2-1 sphinx-rtd-theme-common=1.0.0+dfsg-1 swig=4.0.2-1 swig4.0=4.0.2-1 sysvinit-utils=3.01-1 tar=1.34+dfsg-1 trilinos-dev=12.18.1-2+b1 tzdata=2021e-1 ucf=3.0043 util-linux=2.37.3-1+b1 valgrind=1:3.18.1-1 valgrind-mpi=1:3.18.1-1 x11-common=1:7.7+23 x11proto-dev=2021.5-1 xml-core=0.18+nmu1 xorg-sgml-doctools=1:1.11-1.1 xtl-dev=0.7.2-2 xtrans-dev=1.4.0-1 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220205T030322Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220205T030322Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220207T093834Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20220130T212543Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d fenics-dolfinx=1:0.3.0-13 && mkdir -p /build/fenics-dolfinx-1Ymcqs && dpkg-source --no-check -x /*.dsc /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0 && chown -R builduser:builduser /build/fenics-dolfinx-1Ymcqs" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1643816897" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/fenics-dolfinx-1Ymcqs /tmp/fenics-dolfinx-0.3.0-1307_izg61 bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20220130T212543Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.vzpPnEYWMR as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.vzpPnEYWMR Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.3-1+b1). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 136 kB of archives. After this operation, 406 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20220130T212543Z unstable/main amd64 libfakeroot amd64 1.27-1 [48.5 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220130T212543Z unstable/main amd64 fakeroot amd64 1.27-1 [87.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 136 kB in 0s (1039 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4697 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.27-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.27-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.27-1_amd64.deb ... Unpacking fakeroot (1.27-1) ... Setting up libfakeroot:amd64 (1.27-1) ... Setting up fakeroot (1.27-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-5) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220205T030322Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220205T030322Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220207T093834Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20220130T212543Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.vzpPnEYWMR Get:1 http://snapshot.notset.fr/archive/debian/20220205T030322Z bookworm InRelease [129 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220207T093834Z unstable InRelease [165 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20220130T212543Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20220205T030322Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220205T030322Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20220205T030322Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220205T030322Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20220205T030322Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220205T030322Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20220205T030322Z bookworm/main Sources [11.8 MB] Get:5 http://snapshot.notset.fr/archive/debian/20220205T030322Z bookworm/main amd64 Packages [11.2 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20220207T093834Z unstable/main amd64 Packages Err:6 http://snapshot.notset.fr/archive/debian/20220207T093834Z unstable/main amd64 Packages 404 Not Found [IP: 10.13.0.253 80] Ign:6 http://snapshot.notset.fr/archive/debian/20220207T093834Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20220207T093834Z unstable/main amd64 Packages [12.1 MB] Fetched 35.4 MB in 29s (1212 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.vzpPnEYWMR I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d fenics-dolfinx=1:0.3.0-13 && mkdir -p /build/fenics-dolfinx-1Ymcqs && dpkg-source --no-check -x /*.dsc /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0 && chown -R builduser:builduser /build/fenics-dolfinx-1Ymcqs"' exec /tmp/mmdebstrap.vzpPnEYWMR Reading package lists... NOTICE: 'fenics-dolfinx' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/fenics/fenics-dolfinx.git Please use: git clone https://salsa.debian.org/science-team/fenics/fenics-dolfinx.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1030 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20220205T030322Z bookworm/main fenics-dolfinx 1:0.3.0-13 (dsc) [3950 B] Get:2 http://snapshot.notset.fr/archive/debian/20220205T030322Z bookworm/main fenics-dolfinx 1:0.3.0-13 (tar) [986 kB] Get:3 http://snapshot.notset.fr/archive/debian/20220205T030322Z bookworm/main fenics-dolfinx 1:0.3.0-13 (diff) [40.0 kB] Fetched 1030 kB in 1s (1122 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'fenics-dolfinx_0.3.0-13.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting fenics-dolfinx in /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0 dpkg-source: info: unpacking fenics-dolfinx_0.3.0.orig.tar.gz dpkg-source: info: unpacking fenics-dolfinx_0.3.0-13.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying extra_CXXFLAGS.patch dpkg-source: info: applying python_cmake_module_path.patch dpkg-source: info: applying lib_rename.patch dpkg-source: info: applying stokes-taylor-hood-NAN.patch dpkg-source: info: applying enable-importing-cffi_support-from-new-or-old-numba.patch dpkg-source: info: applying avoid_cppimport_tests.patch dpkg-source: info: applying python_unit_test_32bit.patch dpkg-source: info: applying FindPETSc_mpi_include_path.patch dpkg-source: info: applying use_system_catch.patch dpkg-source: info: applying MPI_remove_inplace_PR1738.patch dpkg-source: info: applying use_std_filesystem_PR1980.patch dpkg-source: info: applying docs_local_mathjax.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1643816897" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.vzpPnEYWMR dpkg-buildpackage: info: source package fenics-dolfinx dpkg-buildpackage: info: source version 1:0.3.0-13 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . fakeroot debian/rules clean py3versions: no X-Python3-Version in control file, using supported versions dh clean --buildsystem=cmake --with python3,sphinxdoc debian/rules override_dh_auto_clean make[1]: Entering directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0' py3versions: no X-Python3-Version in control file, using supported versions dh_auto_clean --builddir=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-real dh_auto_clean --builddir=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-complex rm -f cpp/dolfinx/common/version.h \ cpp/demo/hyperelasticity/CMakeLists.txt \ cpp/demo/poisson/CMakeLists.txt make[1]: Leaving directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0' dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules build-indep py3versions: no X-Python3-Version in control file, using supported versions dh build-indep --buildsystem=cmake --with python3,sphinxdoc dh_update_autotools_config -i -O--buildsystem=cmake dh_autoreconf -i -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0' py3versions: no X-Python3-Version in control file, using supported versions PETSC_DIR=/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-real dh_auto_configure --builddir=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-real -- -D CMAKE_BUILD_TYPE:STRING=RelWithDebInfo -D BUILD_SHARED_LIBS:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D DOLFINX_ENABLE_TRILINOS:BOOL=OFF -D DOLFINX_ENABLE_HDF5:BOOL=ON -D HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc -D DOLFINX_ENABLE_PARMETIS:BOOL=OFF -D DOLFINX_ENABLE_SCOTCH:BOOL=ON -D DOLFINX_ENABLE_DOCS:BOOL=OFF -D DOLFINX_ENABLE_MPI:BOOL=ON -D MPIEXEC_PARAMS:STRING="--oversubscribe" -D CMAKE_CXX_FLAGS:STRING="-fpermissive" -D DOLFINX_EXTRA_CXX_FLAGS:STRING="-g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security" -DXTENSOR_USE_XSIMD=ON /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp cd obj-x86_64-linux-gnu-real && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -D CMAKE_BUILD_TYPE:STRING=RelWithDebInfo -D BUILD_SHARED_LIBS:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D DOLFINX_ENABLE_TRILINOS:BOOL=OFF -D DOLFINX_ENABLE_HDF5:BOOL=ON -D HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc -D DOLFINX_ENABLE_PARMETIS:BOOL=OFF -D DOLFINX_ENABLE_SCOTCH:BOOL=ON -D DOLFINX_ENABLE_DOCS:BOOL=OFF -D DOLFINX_ENABLE_MPI:BOOL=ON -D MPIEXEC_PARAMS:STRING=--oversubscribe -D CMAKE_CXX_FLAGS:STRING=-fpermissive -D "DOLFINX_EXTRA_CXX_FLAGS:STRING=-g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security" -DXTENSOR_USE_XSIMD=ON /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp .. -- The C compiler identification is GNU 11.2.0 -- The CXX compiler identification is GNU 11.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found suitable version "3.1", minimum required is "3") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found suitable version "3.1", minimum required is "3") -- Found MPI: TRUE (found suitable version "3.1", minimum required is "3") -- Performing Test HAVE_PIPE -- Performing Test HAVE_PIPE - Success -- Performing Test HAVE_PEDANTIC -- Performing Test HAVE_PEDANTIC - Success -- Performing Test HAVE_DEBUG -- Performing Test HAVE_DEBUG - Success -- Performing Test HAVE_O2_OPTIMISATION -- Performing Test HAVE_O2_OPTIMISATION - Success -- Found Boost 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer -- Found boost_headers 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.74.0 -- Found boost_timer 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.74.0 -- [x] libboost_timer.so.1.74.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: chrono;headers -- Found boost_chrono 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_chrono-1.74.0 -- [x] libboost_chrono.so.1.74.0 -- [ ] libboost_chrono.a -- Adding boost_chrono dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70") found components: timer -- Performing Test arch_native_supported -- Performing Test arch_native_supported - Success -- Looking for sgemm_ -- Looking for sgemm_ - not found -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/lib/x86_64-linux-gnu/libblas.so -- Looking for cheev_ -- Looking for cheev_ - not found -- Looking for cheev_ -- Looking for cheev_ - not found -- Looking for cheev_ -- Looking for cheev_ - found -- Found LAPACK: /usr/lib/x86_64-linux-gnu/liblapack.so;/usr/lib/x86_64-linux-gnu/libblas.so -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Checking for one of the modules 'petsc;PETSc' -- Test PETSC_TEST_RUNS with shared library linking - Success -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - done -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- Found PETSc: TRUE (found suitable version "3.15.5", minimum required is "3.10") -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.7") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Checking for package 'SCOTCH-PT' -- Found SCOTCH (version 6.1.3) -- Performing test SCOTCH_TEST_RUNS -- Performing test SCOTCH_TEST_RUNS - Success -- Found SCOTCH: /usr/lib/x86_64-linux-gnu/libptscotch.so;/usr/lib/x86_64-linux-gnu/libscotch.so;/usr/lib/x86_64-linux-gnu/libptscotcherr.so -- Found Python3: /usr/bin/python3.9 (found version "3.9.10") found components: Interpreter -- Asking Python module FFCx for location of UFC... () -- Found UFC: /usr/lib/python3/dist-packages/ffcx/codegeneration (Required is at least version "0.3") -- Checking for one of the modules 'slepc;SLEPc' -- Test SLEPC_TEST_RUNS with shared library linking - Success -- Found SLEPc: TRUE (found suitable version "3.15.2", minimum required is "3.10") -- Checking for package 'KaHIP' -- KaHIP could not be found/configured. (missing: KAHIP_INCLUDE_DIRS KAHIP_LIBRARIES KAHIP_TEST_RUNS) -- The following features have been enabled: * BUILD_SHARED_LIBS, Build DOLFINx with shared libraries. * XTENSOR_USE_XSIMD, Enable SIMD with xtensor (xsimd). * DOLFINX_ENABLE_SLEPC, Compile with support for SLEPc. * DOLFINX_ENABLE_KAHIP, Compile with support for KaHIP. -- The following OPTIONAL packages have been found: * SLEPc (required version >= 3.10), Scalable Library for Eigenvalue Problem Computations, -- The following REQUIRED packages have been found: * MPI (required version >= 3) * boost_chrono (required version == 1.74.0) * boost_headers (required version == 1.74.0) * boost_timer (required version == 1.74.0) * Boost (required version >= 1.70), Boost C++ libraries, * BLAS * Threads * xtensor-blas, BLAS extenssion to xtensor., * PETSc (required version >= 3.10), Portable, Extensible Toolkit for Scientific Computation (PETSc), PETSc linear algebra backend * HDF5, Hierarchical Data Format 5 (HDF5), * SCOTCH, Programs and libraries for graph, mesh and hypergraph partitioning, Parallel graph partitioning and redordering * Python3 * UFC (required version >= 0.3), Unified interface for form-compilers (part of FFCx), * xtensor, C++ library for numerical analysis with multi-dimensional array expressions., * Basix (required version >= 0.0.1) * xsimd * PkgConfig -- The following features have been disabled: * DOLFINX_SKIP_BUILD_TESTS, Skip build tests for testing usability of dependency packages. * CMAKE_INSTALL_RPATH_USE_LINK_PATH, Add paths to linker search and installed rpath. * XTENSOR_OPTIMIZE, Enable architecture-specific optimizations as defined by xtensor. * DOLFINX_ENABLE_PARMETIS, Compile with support for ParMETIS. -- The following OPTIONAL packages have not been found: * KaHIP, A family of graph partitioning programs, Parallel graph partitioning -- -- Copying demo and test data to build directory. -- ---------------------------------------------- -- -- Generating form files in demo and test directories. May take some time... -- ---------------------------------------------------------------------------------------- -- -- Generating CMakeLists.txt files in demo directory -- ------------------------------------------------------------------- -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY DOLFINX_ENABLE_DOCS DOLFINX_ENABLE_HDF5 DOLFINX_ENABLE_MPI DOLFINX_ENABLE_SCOTCH DOLFINX_ENABLE_TRILINOS MPIEXEC_PARAMS -- Build files have been written to: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-real PETSC_DIR=/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-complex SLEPC_DIR=/usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-complex dh_auto_configure --builddir=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-complex -- -D CMAKE_BUILD_TYPE:STRING=RelWithDebInfo -D BUILD_SHARED_LIBS:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D DOLFINX_ENABLE_TRILINOS:BOOL=OFF -D DOLFINX_ENABLE_HDF5:BOOL=ON -D HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc -D DOLFINX_ENABLE_PARMETIS:BOOL=OFF -D DOLFINX_ENABLE_SCOTCH:BOOL=ON -D DOLFINX_ENABLE_DOCS:BOOL=OFF -D DOLFINX_ENABLE_MPI:BOOL=ON -D MPIEXEC_PARAMS:STRING="--oversubscribe" -D CMAKE_CXX_FLAGS:STRING="-fpermissive" -D DOLFINX_EXTRA_CXX_FLAGS:STRING="-g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security" -DXTENSOR_USE_XSIMD=ON /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp cd obj-x86_64-linux-gnu-complex && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -D CMAKE_BUILD_TYPE:STRING=RelWithDebInfo -D BUILD_SHARED_LIBS:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D DOLFINX_ENABLE_TRILINOS:BOOL=OFF -D DOLFINX_ENABLE_HDF5:BOOL=ON -D HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc -D DOLFINX_ENABLE_PARMETIS:BOOL=OFF -D DOLFINX_ENABLE_SCOTCH:BOOL=ON -D DOLFINX_ENABLE_DOCS:BOOL=OFF -D DOLFINX_ENABLE_MPI:BOOL=ON -D MPIEXEC_PARAMS:STRING=--oversubscribe -D CMAKE_CXX_FLAGS:STRING=-fpermissive -D "DOLFINX_EXTRA_CXX_FLAGS:STRING=-g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security" -DXTENSOR_USE_XSIMD=ON /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp .. -- The C compiler identification is GNU 11.2.0 -- The CXX compiler identification is GNU 11.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found suitable version "3.1", minimum required is "3") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found suitable version "3.1", minimum required is "3") -- Found MPI: TRUE (found suitable version "3.1", minimum required is "3") -- Performing Test HAVE_PIPE -- Performing Test HAVE_PIPE - Success -- Performing Test HAVE_PEDANTIC -- Performing Test HAVE_PEDANTIC - Success -- Performing Test HAVE_DEBUG -- Performing Test HAVE_DEBUG - Success -- Performing Test HAVE_O2_OPTIMISATION -- Performing Test HAVE_O2_OPTIMISATION - Success -- Found Boost 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer -- Found boost_headers 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.74.0 -- Found boost_timer 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.74.0 -- [x] libboost_timer.so.1.74.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: chrono;headers -- Found boost_chrono 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_chrono-1.74.0 -- [x] libboost_chrono.so.1.74.0 -- [ ] libboost_chrono.a -- Adding boost_chrono dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70") found components: timer -- Performing Test arch_native_supported -- Performing Test arch_native_supported - Success -- Looking for sgemm_ -- Looking for sgemm_ - not found -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/lib/x86_64-linux-gnu/libblas.so -- Looking for cheev_ -- Looking for cheev_ - not found -- Looking for cheev_ -- Looking for cheev_ - not found -- Looking for cheev_ -- Looking for cheev_ - found -- Found LAPACK: /usr/lib/x86_64-linux-gnu/liblapack.so;/usr/lib/x86_64-linux-gnu/libblas.so -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Checking for one of the modules 'petsc;PETSc' -- Test PETSC_TEST_RUNS with shared library linking - Success -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - done -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - found -- Found PETSc: TRUE (found suitable version "3.15.5", minimum required is "3.10") -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.7") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Checking for package 'SCOTCH-PT' -- Found SCOTCH (version 6.1.3) -- Performing test SCOTCH_TEST_RUNS -- Performing test SCOTCH_TEST_RUNS - Success -- Found SCOTCH: /usr/lib/x86_64-linux-gnu/libptscotch.so;/usr/lib/x86_64-linux-gnu/libscotch.so;/usr/lib/x86_64-linux-gnu/libptscotcherr.so -- Found Python3: /usr/bin/python3.9 (found version "3.9.10") found components: Interpreter -- Asking Python module FFCx for location of UFC... () -- Found UFC: /usr/lib/python3/dist-packages/ffcx/codegeneration (Required is at least version "0.3") -- Checking for one of the modules 'slepc;SLEPc' -- Test SLEPC_TEST_RUNS with shared library linking - Success -- Found SLEPc: TRUE (found suitable version "3.15.2", minimum required is "3.10") -- Checking for package 'KaHIP' -- KaHIP could not be found/configured. (missing: KAHIP_INCLUDE_DIRS KAHIP_LIBRARIES KAHIP_TEST_RUNS) -- The following features have been enabled: * BUILD_SHARED_LIBS, Build DOLFINx with shared libraries. * XTENSOR_USE_XSIMD, Enable SIMD with xtensor (xsimd). * DOLFINX_ENABLE_SLEPC, Compile with support for SLEPc. * DOLFINX_ENABLE_KAHIP, Compile with support for KaHIP. -- The following OPTIONAL packages have been found: * SLEPc (required version >= 3.10), Scalable Library for Eigenvalue Problem Computations, -- The following REQUIRED packages have been found: * MPI (required version >= 3) * boost_chrono (required version == 1.74.0) * boost_headers (required version == 1.74.0) * boost_timer (required version == 1.74.0) * Boost (required version >= 1.70), Boost C++ libraries, * BLAS * Threads * xtensor-blas, BLAS extenssion to xtensor., * PETSc (required version >= 3.10), Portable, Extensible Toolkit for Scientific Computation (PETSc), PETSc linear algebra backend * HDF5, Hierarchical Data Format 5 (HDF5), * SCOTCH, Programs and libraries for graph, mesh and hypergraph partitioning, Parallel graph partitioning and redordering * Python3 * UFC (required version >= 0.3), Unified interface for form-compilers (part of FFCx), * xtensor, C++ library for numerical analysis with multi-dimensional array expressions., * Basix (required version >= 0.0.1) * xsimd * PkgConfig -- The following features have been disabled: * DOLFINX_SKIP_BUILD_TESTS, Skip build tests for testing usability of dependency packages. * CMAKE_INSTALL_RPATH_USE_LINK_PATH, Add paths to linker search and installed rpath. * XTENSOR_OPTIMIZE, Enable architecture-specific optimizations as defined by xtensor. * DOLFINX_ENABLE_PARMETIS, Compile with support for ParMETIS. -- The following OPTIONAL packages have not been found: * KaHIP, A family of graph partitioning programs, Parallel graph partitioning -- -- Copying demo and test data to build directory. -- ---------------------------------------------- -- -- Generating form files in demo and test directories. May take some time... -- ---------------------------------------------------------------------------------------- -- -- Generating CMakeLists.txt files in demo directory -- ------------------------------------------------------------------- -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY DOLFINX_ENABLE_DOCS DOLFINX_ENABLE_HDF5 DOLFINX_ENABLE_MPI DOLFINX_ENABLE_SCOTCH DOLFINX_ENABLE_TRILINOS MPIEXEC_PARAMS -- Build files have been written to: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-complex make[1]: Leaving directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0' debian/rules override_dh_auto_build make[1]: Entering directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0' py3versions: no X-Python3-Version in control file, using supported versions PETSC_DIR=/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-real dh_auto_build --builddir=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-real cd obj-x86_64-linux-gnu-real && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-real' /usr/bin/cmake -S/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp -B/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-real --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-real/CMakeFiles /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-real//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-real' make -f dolfinx/CMakeFiles/dolfinx.dir/build.make dolfinx/CMakeFiles/dolfinx.dir/depend make[4]: Entering directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-real' cd /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-real && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-real /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-real/dolfinx /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-real/dolfinx/CMakeFiles/dolfinx.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-real' make -f dolfinx/CMakeFiles/dolfinx.dir/build.make dolfinx/CMakeFiles/dolfinx.dir/build make[4]: Entering directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-real' [ 1%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o [ 3%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/defines.cpp.o cd /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.3.0\" -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp -I/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o -MF CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o.d -o CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o -c /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/IndexMap.cpp cd /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.3.0\" -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -DDOLFINX_GIT_COMMIT_HASH=\"unknown\" -DUFC_SIGNATURE=\"e1986e7a7aeb9a4c5c6c9853df071eb9a49772a5\" -I/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp -I/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/defines.cpp.o -MF CMakeFiles/dolfinx.dir/common/defines.cpp.o.d -o CMakeFiles/dolfinx.dir/common/defines.cpp.o -c /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/defines.cpp [ 4%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/MPI.cpp.o [ 6%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/subsystem.cpp.o [ 7%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/log.cpp.o cd /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.3.0\" -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp -I/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/MPI.cpp.o -MF CMakeFiles/dolfinx.dir/common/MPI.cpp.o.d -o CMakeFiles/dolfinx.dir/common/MPI.cpp.o -c /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/MPI.cpp [ 9%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/Table.cpp.o cd /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.3.0\" -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp -I/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/subsystem.cpp.o -MF CMakeFiles/dolfinx.dir/common/subsystem.cpp.o.d -o CMakeFiles/dolfinx.dir/common/subsystem.cpp.o -c /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/subsystem.cpp cd /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.3.0\" -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp -I/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/log.cpp.o -MF CMakeFiles/dolfinx.dir/common/log.cpp.o.d -o CMakeFiles/dolfinx.dir/common/log.cpp.o -c /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/log.cpp cd /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.3.0\" -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp -I/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem 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-I/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/timing.cpp.o -MF CMakeFiles/dolfinx.dir/common/timing.cpp.o.d -o CMakeFiles/dolfinx.dir/common/timing.cpp.o -c /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/timing.cpp [ 18%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/UniqueIdGenerator.cpp.o cd 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CMakeFiles/dolfinx.dir/common/UniqueIdGenerator.cpp.o.d -o CMakeFiles/dolfinx.dir/common/UniqueIdGenerator.cpp.o -c /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/UniqueIdGenerator.cpp [ 20%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/utils.cpp.o cd /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.3.0\" -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp -I/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/utils.cpp.o -MF CMakeFiles/dolfinx.dir/common/utils.cpp.o.d -o CMakeFiles/dolfinx.dir/common/utils.cpp.o -c /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/utils.cpp [ 21%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/DirichletBC.cpp.o cd /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.3.0\" -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp -I/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/DirichletBC.cpp.o -MF CMakeFiles/dolfinx.dir/fem/DirichletBC.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/DirichletBC.cpp.o -c /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/DirichletBC.cpp [ 23%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/CoordinateElement.cpp.o cd /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK 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-I/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/utils.cpp.o -MF CMakeFiles/dolfinx.dir/fem/utils.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/utils.cpp.o -c /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/utils.cpp [ 40%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/generation/BoxMesh.cpp.o cd 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dolfinx/CMakeFiles/dolfinx.dir/la/PETScKrylovSolver.cpp.o -MF CMakeFiles/dolfinx.dir/la/PETScKrylovSolver.cpp.o.d -o CMakeFiles/dolfinx.dir/la/PETScKrylovSolver.cpp.o -c /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/PETScKrylovSolver.cpp [ 70%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/la/PETScMatrix.cpp.o cd /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.3.0\" -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp -I/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/include -isystem 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-I/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/la/SparsityPattern.cpp.o -MF CMakeFiles/dolfinx.dir/la/SparsityPattern.cpp.o.d -o CMakeFiles/dolfinx.dir/la/SparsityPattern.cpp.o -c /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/SparsityPattern.cpp [ 79%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/la/VectorSpaceBasis.cpp.o cd 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CMakeFiles/dolfinx.dir/common/defines.cpp.o CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o CMakeFiles/dolfinx.dir/common/init.cpp.o CMakeFiles/dolfinx.dir/common/log.cpp.o CMakeFiles/dolfinx.dir/common/MPI.cpp.o CMakeFiles/dolfinx.dir/common/subsystem.cpp.o CMakeFiles/dolfinx.dir/common/Table.cpp.o CMakeFiles/dolfinx.dir/common/Timer.cpp.o CMakeFiles/dolfinx.dir/common/TimeLogger.cpp.o CMakeFiles/dolfinx.dir/common/TimeLogManager.cpp.o CMakeFiles/dolfinx.dir/common/timing.cpp.o CMakeFiles/dolfinx.dir/common/UniqueIdGenerator.cpp.o CMakeFiles/dolfinx.dir/common/utils.cpp.o CMakeFiles/dolfinx.dir/fem/DirichletBC.cpp.o CMakeFiles/dolfinx.dir/fem/CoordinateElement.cpp.o CMakeFiles/dolfinx.dir/fem/DofMap.cpp.o CMakeFiles/dolfinx.dir/fem/ElementDofLayout.cpp.o CMakeFiles/dolfinx.dir/fem/FiniteElement.cpp.o CMakeFiles/dolfinx.dir/fem/FunctionSpace.cpp.o CMakeFiles/dolfinx.dir/fem/discreteoperators.cpp.o CMakeFiles/dolfinx.dir/fem/dofmapbuilder.cpp.o CMakeFiles/dolfinx.dir/fem/interpolate.cpp.o CMakeFiles/dolfinx.dir/fem/petsc.cpp.o CMakeFiles/dolfinx.dir/fem/sparsitybuild.cpp.o CMakeFiles/dolfinx.dir/fem/utils.cpp.o CMakeFiles/dolfinx.dir/generation/BoxMesh.cpp.o CMakeFiles/dolfinx.dir/generation/IntervalMesh.cpp.o CMakeFiles/dolfinx.dir/generation/RectangleMesh.cpp.o CMakeFiles/dolfinx.dir/geometry/BoundingBoxTree.cpp.o CMakeFiles/dolfinx.dir/geometry/gjk.cpp.o CMakeFiles/dolfinx.dir/geometry/utils.cpp.o CMakeFiles/dolfinx.dir/graph/boostordering.cpp.o CMakeFiles/dolfinx.dir/graph/partitioners.cpp.o CMakeFiles/dolfinx.dir/graph/partition.cpp.o CMakeFiles/dolfinx.dir/graph/scotch.cpp.o CMakeFiles/dolfinx.dir/io/cells.cpp.o CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o CMakeFiles/dolfinx.dir/io/pugixml.cpp.o CMakeFiles/dolfinx.dir/io/VTKFile.cpp.o CMakeFiles/dolfinx.dir/io/XDMFFile.cpp.o CMakeFiles/dolfinx.dir/io/xdmf_function.cpp.o CMakeFiles/dolfinx.dir/io/xdmf_mesh.cpp.o CMakeFiles/dolfinx.dir/io/xdmf_utils.cpp.o CMakeFiles/dolfinx.dir/la/PETScKrylovSolver.cpp.o CMakeFiles/dolfinx.dir/la/PETScMatrix.cpp.o CMakeFiles/dolfinx.dir/la/PETScOperator.cpp.o CMakeFiles/dolfinx.dir/la/PETScOptions.cpp.o CMakeFiles/dolfinx.dir/la/PETScVector.cpp.o CMakeFiles/dolfinx.dir/la/SLEPcEigenSolver.cpp.o CMakeFiles/dolfinx.dir/la/SparsityPattern.cpp.o CMakeFiles/dolfinx.dir/la/VectorSpaceBasis.cpp.o CMakeFiles/dolfinx.dir/mesh/Mesh.cpp.o CMakeFiles/dolfinx.dir/mesh/Geometry.cpp.o CMakeFiles/dolfinx.dir/mesh/Topology.cpp.o CMakeFiles/dolfinx.dir/mesh/cell_types.cpp.o CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o CMakeFiles/dolfinx.dir/mesh/permutationcomputation.cpp.o CMakeFiles/dolfinx.dir/mesh/topologycomputation.cpp.o CMakeFiles/dolfinx.dir/mesh/utils.cpp.o CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o CMakeFiles/dolfinx.dir/refinement/refine.cpp.o CMakeFiles/dolfinx.dir/refinement/utils.cpp.o /usr/lib/x86_64-linux-gnu/libbasix.so.0.3.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.74.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libptscotch.so /usr/lib/x86_64-linux-gnu/libscotch.so /usr/lib/x86_64-linux-gnu/libptscotcherr.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/lib/libpetsc_real.so cd /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/cmake -E cmake_symlink_library libdolfinx_real.so.0.3.0 libdolfinx_real.so.0.3 libdolfinx_real.so make[4]: Leaving directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-real' [100%] Built target dolfinx make[3]: Leaving directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-real' /usr/bin/cmake -E cmake_progress_start /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-real/CMakeFiles 0 make[2]: Leaving directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-real' PETSC_DIR=/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-complex SLEPC_DIR=/usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-complex dh_auto_build --builddir=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-complex cd obj-x86_64-linux-gnu-complex && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-complex' /usr/bin/cmake -S/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp -B/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-complex --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start 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-I/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/init.cpp.o -MF CMakeFiles/dolfinx.dir/common/init.cpp.o.d -o CMakeFiles/dolfinx.dir/common/init.cpp.o -c /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/init.cpp [ 10%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/MPI.cpp.o cd 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dolfinx/CMakeFiles/dolfinx.dir/fem/sparsitybuild.cpp.o -MF CMakeFiles/dolfinx.dir/fem/sparsitybuild.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/sparsitybuild.cpp.o -c /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/sparsitybuild.cpp [ 39%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/utils.cpp.o cd /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.3.0\" -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp -I/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi 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-fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/geometry/utils.cpp.o -MF CMakeFiles/dolfinx.dir/geometry/utils.cpp.o.d -o CMakeFiles/dolfinx.dir/geometry/utils.cpp.o -c /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/geometry/utils.cpp [ 50%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/graph/boostordering.cpp.o cd /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.3.0\" -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp -I/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi 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-I/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/topologycomputation.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/topologycomputation.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/topologycomputation.cpp.o -c /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/topologycomputation.cpp [ 92%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/utils.cpp.o cd /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.3.0\" -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp -I/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/utils.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/utils.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/utils.cpp.o -c /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/utils.cpp [ 93%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o cd /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.3.0\" -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp -I/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o -MF CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o.d -o CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o -c /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/nls/NewtonSolver.cpp [ 95%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o cd /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.3.0\" -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp -I/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem 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-DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp -I/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/refinement/refine.cpp.o -MF CMakeFiles/dolfinx.dir/refinement/refine.cpp.o.d -o CMakeFiles/dolfinx.dir/refinement/refine.cpp.o -c /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/refinement/refine.cpp [ 98%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/refinement/utils.cpp.o cd /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.3.0\" -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Ddolfinx_EXPORTS -I/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp -I/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-complex/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/refinement/utils.cpp.o -MF CMakeFiles/dolfinx.dir/refinement/utils.cpp.o.d -o CMakeFiles/dolfinx.dir/refinement/utils.cpp.o -c /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/refinement/utils.cpp [100%] Linking CXX shared library libdolfinx_complex.so cd /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/cmake -E cmake_link_script CMakeFiles/dolfinx.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -fpermissive -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -pthread -Wl,-z,relro -shared -Wl,-soname,libdolfinx_complex.so.0.3 -o libdolfinx_complex.so.0.3.0 CMakeFiles/dolfinx.dir/common/defines.cpp.o CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o CMakeFiles/dolfinx.dir/common/init.cpp.o CMakeFiles/dolfinx.dir/common/log.cpp.o CMakeFiles/dolfinx.dir/common/MPI.cpp.o 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CMakeFiles/dolfinx.dir/la/SLEPcEigenSolver.cpp.o CMakeFiles/dolfinx.dir/la/SparsityPattern.cpp.o CMakeFiles/dolfinx.dir/la/VectorSpaceBasis.cpp.o CMakeFiles/dolfinx.dir/mesh/Mesh.cpp.o CMakeFiles/dolfinx.dir/mesh/Geometry.cpp.o CMakeFiles/dolfinx.dir/mesh/Topology.cpp.o CMakeFiles/dolfinx.dir/mesh/cell_types.cpp.o CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o CMakeFiles/dolfinx.dir/mesh/permutationcomputation.cpp.o CMakeFiles/dolfinx.dir/mesh/topologycomputation.cpp.o CMakeFiles/dolfinx.dir/mesh/utils.cpp.o CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o CMakeFiles/dolfinx.dir/refinement/refine.cpp.o CMakeFiles/dolfinx.dir/refinement/utils.cpp.o /usr/lib/x86_64-linux-gnu/libbasix.so.0.3.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.74.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libptscotch.so /usr/lib/x86_64-linux-gnu/libscotch.so /usr/lib/x86_64-linux-gnu/libptscotcherr.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-complex/lib/libslepc_complex.so /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-complex/lib/libpetsc_complex.so cd /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/cmake -E cmake_symlink_library libdolfinx_complex.so.0.3.0 libdolfinx_complex.so.0.3 libdolfinx_complex.so make[4]: Leaving directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-complex' [100%] Built target dolfinx make[3]: Leaving directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-complex' /usr/bin/cmake -E cmake_progress_start /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-complex/CMakeFiles 0 make[2]: Leaving directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-complex' make[1]: Leaving directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-indep py3versions: no X-Python3-Version in control file, using supported versions dh binary-indep --buildsystem=cmake --with python3,sphinxdoc dh_testroot -i -O--buildsystem=cmake dh_prep -i -O--buildsystem=cmake debian/rules override_dh_auto_install-indep make[1]: Entering directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0' py3versions: no X-Python3-Version in control file, using supported versions dh_auto_install --builddir=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-real --destdir=debian/tmp-real cd obj-x86_64-linux-gnu-real && make -j10 install DESTDIR=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-real' /usr/bin/cmake -S/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp -B/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-real --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-real' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-real' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RelWithDebInfo" -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx.h -- Installing: 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/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/common/Table.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/common/Timer.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/common/TimeLogger.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/common/TimeLogManager.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/common/array2d.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/common/math.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/common/timing.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/common/types.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/common/UniqueIdGenerator.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/common/utils.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/common/version.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/fem/Constant.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/fem/CoordinateElement.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/fem/DirichletBC.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/fem/DofMap.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/fem/ElementDofLayout.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/fem/Expression.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/fem/FiniteElement.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/fem/Form.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/fem/Function.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/fem/FunctionSpace.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/fem/assembler.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/fem/assemble_matrix_impl.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/fem/assemble_scalar_impl.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/fem/assemble_vector_impl.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/fem/discreteoperators.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/fem/dofmapbuilder.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/fem/dolfin_fem.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/fem/interpolate.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/fem/petsc.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/fem/sparsitybuild.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/fem/utils.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/generation/BoxMesh.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/generation/dolfin_generation.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/generation/IntervalMesh.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/generation/RectangleMesh.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/geometry/BoundingBoxTree.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/geometry/gjk.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/geometry/dolfin_geometry.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/geometry/utils.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/graph/AdjacencyList.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/graph/boostordering.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/graph/dolfin_graph.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/graph/partitioners.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/graph/partition.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/graph/scotch.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/io/dolfin_io.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/io/cells.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/io/HDF5Interface.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/io/pugiconfig.hpp -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/io/pugixml.hpp -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/io/VTKFile.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/io/XDMFFile.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/io/xdmf_function.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/io/xdmf_mesh.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/io/xdmf_meshtags.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/io/xdmf_read.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/io/xdmf_utils.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/la/dolfin_la.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/la/PETScKrylovSolver.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/la/PETScMatrix.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/la/PETScOperator.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/la/PETScOptions.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/la/PETScVector.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/la/SLEPcEigenSolver.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/la/SparsityPattern.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/la/utils.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/la/Vector.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/la/VectorSpaceBasis.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/mesh/dolfin_mesh.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/mesh/Mesh.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/mesh/Geometry.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/mesh/Topology.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/mesh/MeshTags.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/mesh/cell_types.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/mesh/graphbuild.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/mesh/permutationcomputation.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/mesh/topologycomputation.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/mesh/utils.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/nls/dolfin_nls.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/nls/NewtonSolver.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/refinement/dolfin_refinement.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/refinement/plaza.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/refinement/refine.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include/dolfinx/refinement/utils.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx/FindPETSc.cmake -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx/FindSLEPc.cmake -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfig.cmake -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfigVersion.cmake -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/pkgconfig/dolfinx_real.pc -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/dolfinx/dolfinx.conf -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/share/dolfinx/demo -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/share/dolfinx/demo/CMakeLists.txt -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/share/dolfinx/demo/hyperelasticity -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/share/dolfinx/demo/hyperelasticity/hyperelasticity.ufl -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/share/dolfinx/demo/hyperelasticity/main.cpp -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/share/dolfinx/demo/hyperelasticity/hyperelasticity.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/share/dolfinx/demo/hyperelasticity/hyperelasticity.c -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/share/dolfinx/demo/hyperelasticity/CMakeLists.txt -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/share/dolfinx/demo/poisson -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/share/dolfinx/demo/poisson/main.cpp -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/share/dolfinx/demo/poisson/poisson.ufl -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/share/dolfinx/demo/poisson/poisson.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/share/dolfinx/demo/poisson/poisson.c -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/share/dolfinx/demo/poisson/CMakeLists.txt ---------------------------------------------------------------------------- DOLFINx has now been installed in /usr and demo programs have been installed in /usr/share/dolfinx/demo Don't forget to update your environment variables. This can be done easily using the helper file 'dolfinx.conf' which sets the appropriate variables (for users of the Bash shell). To update your environment variables, run the following command: source /usr/lib/x86_64-linux-gnu/dolfinx/dolfinx.conf ---------------------------------------------------------------------------- make[2]: Leaving directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-real' for build in real; do \ for v in python3.9 python3.10 ; do \ cd python; \ PATH=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-${build}/usr/bin:$PATH \ PETSC_DIR=/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-${build} SLEPC_DIR=/usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-${build} \ CXXFLAGS="-g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-${build}/usr/include" \ VERBOSE=1 \ $v setup.py build --build-base=build-${build} install --root=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-${build} --install-layout=deb; \ cd ..; \ done; \ done running build running build_py creating build-real creating build-real/lib.linux-x86_64-3.9 creating build-real/lib.linux-x86_64-3.9/dolfinx copying dolfinx/__init__.py -> build-real/lib.linux-x86_64-3.9/dolfinx copying dolfinx/common.py -> build-real/lib.linux-x86_64-3.9/dolfinx copying dolfinx/generation.py -> build-real/lib.linux-x86_64-3.9/dolfinx copying dolfinx/geometry.py -> build-real/lib.linux-x86_64-3.9/dolfinx copying dolfinx/io.py -> build-real/lib.linux-x86_64-3.9/dolfinx copying dolfinx/la.py -> build-real/lib.linux-x86_64-3.9/dolfinx copying dolfinx/log.py -> build-real/lib.linux-x86_64-3.9/dolfinx copying dolfinx/mesh.py -> build-real/lib.linux-x86_64-3.9/dolfinx copying dolfinx/nls.py -> build-real/lib.linux-x86_64-3.9/dolfinx copying dolfinx/pkgconfig.py -> build-real/lib.linux-x86_64-3.9/dolfinx copying dolfinx/plot.py -> build-real/lib.linux-x86_64-3.9/dolfinx copying dolfinx/jit.py -> build-real/lib.linux-x86_64-3.9/dolfinx creating build-real/lib.linux-x86_64-3.9/dolfinx/fem copying dolfinx/fem/__init__.py -> build-real/lib.linux-x86_64-3.9/dolfinx/fem copying dolfinx/fem/assemble.py -> build-real/lib.linux-x86_64-3.9/dolfinx/fem copying dolfinx/fem/dirichletbc.py -> build-real/lib.linux-x86_64-3.9/dolfinx/fem copying dolfinx/fem/dofmap.py -> build-real/lib.linux-x86_64-3.9/dolfinx/fem copying dolfinx/fem/form.py -> build-real/lib.linux-x86_64-3.9/dolfinx/fem copying dolfinx/fem/formmanipulations.py -> build-real/lib.linux-x86_64-3.9/dolfinx/fem copying dolfinx/fem/function.py -> build-real/lib.linux-x86_64-3.9/dolfinx/fem copying dolfinx/fem/problem.py -> build-real/lib.linux-x86_64-3.9/dolfinx/fem creating build-real/lib.linux-x86_64-3.9/dolfinx/wrappers copying dolfinx/wrappers/__init__.py -> build-real/lib.linux-x86_64-3.9/dolfinx/wrappers package init file 'dolfinx_utils/test/__init__.py' not found (or not a regular file) creating build-real/lib.linux-x86_64-3.9/dolfinx_utils creating build-real/lib.linux-x86_64-3.9/dolfinx_utils/test copying dolfinx_utils/test/fixtures.py -> build-real/lib.linux-x86_64-3.9/dolfinx_utils/test copying dolfinx_utils/test/skips.py -> build-real/lib.linux-x86_64-3.9/dolfinx_utils/test copying dolfinx/wrappers/MPICommWrapper.h -> build-real/lib.linux-x86_64-3.9/dolfinx/wrappers copying dolfinx/wrappers/array.h -> build-real/lib.linux-x86_64-3.9/dolfinx/wrappers copying dolfinx/wrappers/caster_mpi.h -> build-real/lib.linux-x86_64-3.9/dolfinx/wrappers copying dolfinx/wrappers/caster_petsc.h -> build-real/lib.linux-x86_64-3.9/dolfinx/wrappers running build_ext Re-run cmake no build system arguments -- The C compiler identification is GNU 11.2.0 -- The CXX compiler identification is GNU 11.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test arch_native_supported -- Performing Test arch_native_supported - Success -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found Boost 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer;filesystem -- Found boost_headers 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.74.0 -- Found boost_timer 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.74.0 -- [x] libboost_timer.so.1.74.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: chrono;headers -- Found boost_chrono 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_chrono-1.74.0 -- [x] libboost_chrono.so.1.74.0 -- [ ] libboost_chrono.a -- Adding boost_chrono dependencies: headers -- Found boost_filesystem 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_filesystem-1.74.0 -- [x] libboost_filesystem.so.1.74.0 -- [ ] libboost_filesystem.a -- Adding boost_filesystem dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70") found components: timer filesystem -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.7") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Checking for one of the modules 'petsc;PETSc' -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - done -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- Checking for one of the modules 'slepc;SLEPc' -- Found PythonInterp: /usr/bin/python3.9 (found version "3.9.10") -- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython3.9.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/lib/python3/dist-packages/pybind11/include (found version "2.9.0") -- Performing Test HAVE_PEDANTIC -- Performing Test HAVE_PEDANTIC - Success -- Checking for package 'PETSc4Py' -- petsc4py version 3.15.1 found -- Found PETSc4py: /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -- Found MPI4PY: /usr/lib/python3/dist-packages/mpi4py/include -- Configuring done -- Generating done -- Build files have been written to: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/build-real/temp.linux-x86_64-3.9 gmake[2]: Entering directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/build-real/temp.linux-x86_64-3.9' /usr/bin/cmake -S/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python -B/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/build-real/temp.linux-x86_64-3.9 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/build-real/temp.linux-x86_64-3.9/CMakeFiles /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/build-real/temp.linux-x86_64-3.9//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[3]: Entering directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/build-real/temp.linux-x86_64-3.9' /usr/bin/gmake -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/depend gmake[4]: Entering directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/build-real/temp.linux-x86_64-3.9' cd /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/build-real/temp.linux-x86_64-3.9 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/build-real/temp.linux-x86_64-3.9 /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/build-real/temp.linux-x86_64-3.9 /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/build-real/temp.linux-x86_64-3.9/CMakeFiles/cpp.dir/DependInfo.cmake --color= gmake[4]: Leaving directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/build-real/temp.linux-x86_64-3.9' /usr/bin/gmake -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/build gmake[4]: Entering directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/build-real/temp.linux-x86_64-3.9' [ 7%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/dolfin.cpp.o [ 15%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/fem.cpp.o [ 23%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/common.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.3.0\" -DHAS_PYBIND11_MPI4PY -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/include/python3.9 -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include -DVERSION_INFO=\"0.3.0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -std=c++17 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/dolfin.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/dolfin.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/dolfin.cpp.o -c /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/dolfinx/wrappers/dolfin.cpp /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.3.0\" -DHAS_PYBIND11_MPI4PY -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/include/python3.9 -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include -DVERSION_INFO=\"0.3.0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -std=c++17 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/common.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/common.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/common.cpp.o -c /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/dolfinx/wrappers/common.cpp /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.3.0\" -DHAS_PYBIND11_MPI4PY -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/include/python3.9 -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include -DVERSION_INFO=\"0.3.0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -std=c++17 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/fem.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/fem.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/fem.cpp.o -c /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/dolfinx/wrappers/fem.cpp [ 30%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/generation.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.3.0\" -DHAS_PYBIND11_MPI4PY -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/include/python3.9 -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include -DVERSION_INFO=\"0.3.0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -std=c++17 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/generation.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/generation.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/generation.cpp.o -c /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/dolfinx/wrappers/generation.cpp [ 38%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/geometry.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.3.0\" -DHAS_PYBIND11_MPI4PY -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/include/python3.9 -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include -DVERSION_INFO=\"0.3.0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -std=c++17 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/geometry.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/geometry.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/geometry.cpp.o -c /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/dolfinx/wrappers/geometry.cpp [ 46%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/graph.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.3.0\" -DHAS_PYBIND11_MPI4PY -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/include/python3.9 -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include -DVERSION_INFO=\"0.3.0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -std=c++17 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/graph.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/graph.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/graph.cpp.o -c /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/dolfinx/wrappers/graph.cpp [ 53%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/io.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.3.0\" -DHAS_PYBIND11_MPI4PY -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/include/python3.9 -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include -DVERSION_INFO=\"0.3.0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -std=c++17 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/io.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/io.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/io.cpp.o -c /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/dolfinx/wrappers/io.cpp [ 61%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/la.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.3.0\" -DHAS_PYBIND11_MPI4PY -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/include/python3.9 -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include -DVERSION_INFO=\"0.3.0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -std=c++17 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/la.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/la.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/la.cpp.o -c /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/dolfinx/wrappers/la.cpp [ 69%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/log.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.3.0\" -DHAS_PYBIND11_MPI4PY -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/include/python3.9 -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include -DVERSION_INFO=\"0.3.0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -std=c++17 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/log.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/log.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/log.cpp.o -c /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/dolfinx/wrappers/log.cpp [ 76%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/mesh.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.3.0\" -DHAS_PYBIND11_MPI4PY -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/include/python3.9 -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include -DVERSION_INFO=\"0.3.0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -std=c++17 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/mesh.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/mesh.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/mesh.cpp.o -c /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/dolfinx/wrappers/mesh.cpp [ 84%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/nls.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.3.0\" -DHAS_PYBIND11_MPI4PY -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/include/python3.9 -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include -DVERSION_INFO=\"0.3.0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -std=c++17 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/nls.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/nls.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/nls.cpp.o -c /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/dolfinx/wrappers/nls.cpp [ 92%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.3.0\" -DHAS_PYBIND11_MPI4PY -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/include/python3.9 -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include -DVERSION_INFO=\"0.3.0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -std=c++17 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o -c /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/dolfinx/wrappers/refinement.cpp [100%] Linking CXX shared library ../lib.linux-x86_64-3.9/dolfinx/cpp.cpython-39-x86_64-linux-gnu.so /usr/bin/cmake -E cmake_link_script CMakeFiles/cpp.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include -DVERSION_INFO=\"0.3.0\" -O3 -DNDEBUG -flto -pthread -Wl,-z,relro -shared -Wl,-soname,cpp.cpython-39-x86_64-linux-gnu.so -o ../lib.linux-x86_64-3.9/dolfinx/cpp.cpython-39-x86_64-linux-gnu.so CMakeFiles/cpp.dir/dolfinx/wrappers/dolfin.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/common.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/fem.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/generation.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/geometry.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/graph.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/io.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/la.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/log.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/mesh.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/nls.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o -Wl,-rpath,/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/lib /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.3.0 /usr/lib/x86_64-linux-gnu/libbasix.so.0.3.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/bin/strip /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/build-real/lib.linux-x86_64-3.9/dolfinx/cpp.cpython-39-x86_64-linux-gnu.so gmake[4]: Leaving directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/build-real/temp.linux-x86_64-3.9' [100%] Built target cpp gmake[3]: Leaving directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/build-real/temp.linux-x86_64-3.9' /usr/bin/cmake -E cmake_progress_start /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/build-real/temp.linux-x86_64-3.9/CMakeFiles 0 gmake[2]: Leaving directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/build-real/temp.linux-x86_64-3.9' running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running install_lib creating /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3 creating /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages creating /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx copying build-real/lib.linux-x86_64-3.9/dolfinx/__init__.py -> /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx copying build-real/lib.linux-x86_64-3.9/dolfinx/common.py -> /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx copying build-real/lib.linux-x86_64-3.9/dolfinx/generation.py -> /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx copying build-real/lib.linux-x86_64-3.9/dolfinx/geometry.py -> /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx copying build-real/lib.linux-x86_64-3.9/dolfinx/io.py -> /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx copying build-real/lib.linux-x86_64-3.9/dolfinx/la.py -> /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx copying build-real/lib.linux-x86_64-3.9/dolfinx/log.py -> /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx copying build-real/lib.linux-x86_64-3.9/dolfinx/mesh.py -> /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx copying build-real/lib.linux-x86_64-3.9/dolfinx/nls.py -> /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx copying build-real/lib.linux-x86_64-3.9/dolfinx/pkgconfig.py -> /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx copying build-real/lib.linux-x86_64-3.9/dolfinx/plot.py -> /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx copying build-real/lib.linux-x86_64-3.9/dolfinx/jit.py -> /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx creating /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem copying build-real/lib.linux-x86_64-3.9/dolfinx/fem/__init__.py -> /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem copying build-real/lib.linux-x86_64-3.9/dolfinx/fem/assemble.py -> /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem copying build-real/lib.linux-x86_64-3.9/dolfinx/fem/dirichletbc.py -> /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem copying build-real/lib.linux-x86_64-3.9/dolfinx/fem/dofmap.py -> /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem copying build-real/lib.linux-x86_64-3.9/dolfinx/fem/form.py -> /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem copying build-real/lib.linux-x86_64-3.9/dolfinx/fem/formmanipulations.py -> /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem copying build-real/lib.linux-x86_64-3.9/dolfinx/fem/function.py -> /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem copying build-real/lib.linux-x86_64-3.9/dolfinx/fem/problem.py -> /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem creating /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/wrappers copying build-real/lib.linux-x86_64-3.9/dolfinx/wrappers/__init__.py -> /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/wrappers copying build-real/lib.linux-x86_64-3.9/dolfinx/wrappers/MPICommWrapper.h -> /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/wrappers copying build-real/lib.linux-x86_64-3.9/dolfinx/wrappers/array.h -> /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/wrappers copying build-real/lib.linux-x86_64-3.9/dolfinx/wrappers/caster_mpi.h -> /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/wrappers copying build-real/lib.linux-x86_64-3.9/dolfinx/wrappers/caster_petsc.h -> /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/wrappers copying build-real/lib.linux-x86_64-3.9/dolfinx/cpp.cpython-39-x86_64-linux-gnu.so -> /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx creating /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx_utils creating /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx_utils/test copying build-real/lib.linux-x86_64-3.9/dolfinx_utils/test/fixtures.py -> /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx_utils/test copying build-real/lib.linux-x86_64-3.9/dolfinx_utils/test/skips.py -> /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx_utils/test byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/__init__.py to __init__.cpython-39.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/common.py to common.cpython-39.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/generation.py to generation.cpython-39.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/geometry.py to geometry.cpython-39.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/io.py to io.cpython-39.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/la.py to la.cpython-39.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/log.py to log.cpython-39.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/mesh.py to mesh.cpython-39.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/nls.py to nls.cpython-39.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/pkgconfig.py to pkgconfig.cpython-39.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/plot.py to plot.cpython-39.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/jit.py to jit.cpython-39.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem/__init__.py to __init__.cpython-39.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem/assemble.py to assemble.cpython-39.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem/dirichletbc.py to dirichletbc.cpython-39.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem/dofmap.py to dofmap.cpython-39.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem/form.py to form.cpython-39.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem/formmanipulations.py to formmanipulations.cpython-39.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem/function.py to function.cpython-39.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem/problem.py to problem.cpython-39.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/wrappers/__init__.py to __init__.cpython-39.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx_utils/test/fixtures.py to fixtures.cpython-39.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx_utils/test/skips.py to skips.cpython-39.pyc running install_egg_info running egg_info creating fenics_dolfinx.egg-info writing fenics_dolfinx.egg-info/PKG-INFO writing dependency_links to fenics_dolfinx.egg-info/dependency_links.txt writing requirements to fenics_dolfinx.egg-info/requires.txt writing top-level names to fenics_dolfinx.egg-info/top_level.txt writing manifest file 'fenics_dolfinx.egg-info/SOURCES.txt' reading manifest file 'fenics_dolfinx.egg-info/SOURCES.txt' writing manifest file 'fenics_dolfinx.egg-info/SOURCES.txt' Copying fenics_dolfinx.egg-info to /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/fenics_dolfinx-0.3.0.egg-info Skipping SOURCES.txt running install_scripts running build running build_py creating build-real/lib.linux-x86_64-3.10 creating build-real/lib.linux-x86_64-3.10/dolfinx copying dolfinx/__init__.py -> build-real/lib.linux-x86_64-3.10/dolfinx copying dolfinx/common.py -> build-real/lib.linux-x86_64-3.10/dolfinx copying dolfinx/generation.py -> build-real/lib.linux-x86_64-3.10/dolfinx copying dolfinx/geometry.py -> build-real/lib.linux-x86_64-3.10/dolfinx copying dolfinx/io.py -> build-real/lib.linux-x86_64-3.10/dolfinx copying dolfinx/la.py -> build-real/lib.linux-x86_64-3.10/dolfinx copying dolfinx/log.py -> build-real/lib.linux-x86_64-3.10/dolfinx copying dolfinx/mesh.py -> build-real/lib.linux-x86_64-3.10/dolfinx copying dolfinx/nls.py -> build-real/lib.linux-x86_64-3.10/dolfinx copying dolfinx/pkgconfig.py -> build-real/lib.linux-x86_64-3.10/dolfinx copying dolfinx/plot.py -> build-real/lib.linux-x86_64-3.10/dolfinx copying dolfinx/jit.py -> build-real/lib.linux-x86_64-3.10/dolfinx creating build-real/lib.linux-x86_64-3.10/dolfinx/fem copying dolfinx/fem/__init__.py -> build-real/lib.linux-x86_64-3.10/dolfinx/fem copying dolfinx/fem/assemble.py -> build-real/lib.linux-x86_64-3.10/dolfinx/fem copying dolfinx/fem/dirichletbc.py -> build-real/lib.linux-x86_64-3.10/dolfinx/fem copying dolfinx/fem/dofmap.py -> build-real/lib.linux-x86_64-3.10/dolfinx/fem copying dolfinx/fem/form.py -> build-real/lib.linux-x86_64-3.10/dolfinx/fem copying dolfinx/fem/formmanipulations.py -> build-real/lib.linux-x86_64-3.10/dolfinx/fem copying dolfinx/fem/function.py -> build-real/lib.linux-x86_64-3.10/dolfinx/fem copying dolfinx/fem/problem.py -> build-real/lib.linux-x86_64-3.10/dolfinx/fem creating build-real/lib.linux-x86_64-3.10/dolfinx/wrappers copying dolfinx/wrappers/__init__.py -> build-real/lib.linux-x86_64-3.10/dolfinx/wrappers package init file 'dolfinx_utils/test/__init__.py' not found (or not a regular file) creating build-real/lib.linux-x86_64-3.10/dolfinx_utils creating build-real/lib.linux-x86_64-3.10/dolfinx_utils/test copying dolfinx_utils/test/fixtures.py -> build-real/lib.linux-x86_64-3.10/dolfinx_utils/test copying dolfinx_utils/test/skips.py -> build-real/lib.linux-x86_64-3.10/dolfinx_utils/test copying dolfinx/wrappers/MPICommWrapper.h -> build-real/lib.linux-x86_64-3.10/dolfinx/wrappers copying dolfinx/wrappers/array.h -> build-real/lib.linux-x86_64-3.10/dolfinx/wrappers copying dolfinx/wrappers/caster_mpi.h -> build-real/lib.linux-x86_64-3.10/dolfinx/wrappers copying dolfinx/wrappers/caster_petsc.h -> build-real/lib.linux-x86_64-3.10/dolfinx/wrappers running build_ext Re-run cmake no build system arguments -- The C compiler identification is GNU 11.2.0 -- The CXX compiler identification is GNU 11.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test arch_native_supported -- Performing Test arch_native_supported - Success -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found Boost 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer;filesystem -- Found boost_headers 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.74.0 -- Found boost_timer 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.74.0 -- [x] libboost_timer.so.1.74.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: chrono;headers -- Found boost_chrono 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_chrono-1.74.0 -- [x] libboost_chrono.so.1.74.0 -- [ ] libboost_chrono.a -- Adding boost_chrono dependencies: headers -- Found boost_filesystem 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_filesystem-1.74.0 -- [x] libboost_filesystem.so.1.74.0 -- [ ] libboost_filesystem.a -- Adding boost_filesystem dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70") found components: timer filesystem -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.7") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Checking for one of the modules 'petsc;PETSc' -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - done -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- Checking for one of the modules 'slepc;SLEPc' -- Found PythonInterp: /usr/bin/python3.10 (found version "3.10.2") -- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython3.10.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/lib/python3/dist-packages/pybind11/include (found version "2.9.0") -- Performing Test HAVE_PEDANTIC -- Performing Test HAVE_PEDANTIC - Success -- Checking for package 'PETSc4Py' -- petsc4py version 3.15.1 found -- Found PETSc4py: /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -- Found MPI4PY: /usr/lib/python3/dist-packages/mpi4py/include -- Configuring done -- Generating done -- Build files have been written to: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/build-real/temp.linux-x86_64-3.10 gmake[2]: Entering directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/build-real/temp.linux-x86_64-3.10' /usr/bin/cmake -S/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python -B/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/build-real/temp.linux-x86_64-3.10 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/build-real/temp.linux-x86_64-3.10/CMakeFiles /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/build-real/temp.linux-x86_64-3.10//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[3]: Entering directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/build-real/temp.linux-x86_64-3.10' /usr/bin/gmake -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/depend gmake[4]: Entering directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/build-real/temp.linux-x86_64-3.10' cd /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/build-real/temp.linux-x86_64-3.10 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/build-real/temp.linux-x86_64-3.10 /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/build-real/temp.linux-x86_64-3.10 /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/build-real/temp.linux-x86_64-3.10/CMakeFiles/cpp.dir/DependInfo.cmake --color= gmake[4]: Leaving directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/build-real/temp.linux-x86_64-3.10' /usr/bin/gmake -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/build gmake[4]: Entering directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/build-real/temp.linux-x86_64-3.10' [ 7%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/dolfin.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.3.0\" -DHAS_PYBIND11_MPI4PY -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/include/python3.10 -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include -DVERSION_INFO=\"0.3.0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -std=c++17 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/dolfin.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/dolfin.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/dolfin.cpp.o -c /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/dolfinx/wrappers/dolfin.cpp [ 15%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/fem.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.3.0\" -DHAS_PYBIND11_MPI4PY -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/include/python3.10 -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include -DVERSION_INFO=\"0.3.0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -std=c++17 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/fem.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/fem.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/fem.cpp.o -c /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/dolfinx/wrappers/fem.cpp [ 23%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/common.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.3.0\" -DHAS_PYBIND11_MPI4PY -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/include/python3.10 -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include -DVERSION_INFO=\"0.3.0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -std=c++17 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/common.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/common.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/common.cpp.o -c /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/dolfinx/wrappers/common.cpp [ 30%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/generation.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.3.0\" -DHAS_PYBIND11_MPI4PY -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/include/python3.10 -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/include -DVERSION_INFO=\"0.3.0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -std=c++17 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/generation.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/generation.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/generation.cpp.o -c /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/dolfinx/wrappers/generation.cpp [ 38%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/geometry.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.3.0\" -DHAS_PYBIND11_MPI4PY -DHAS_SLEPC -DXTENSOR_USE_XSIMD -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/lib/python3/dist-packages/pybind11/include -isystem /usr/include/python3.10 -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi 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CMakeFiles/cpp.dir/dolfinx/wrappers/log.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/mesh.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/nls.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o -Wl,-rpath,/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/lib /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.3.0 /usr/lib/x86_64-linux-gnu/libbasix.so.0.3.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/slepcdir/slepc3.15/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/bin/strip /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/build-real/lib.linux-x86_64-3.10/dolfinx/cpp.cpython-310-x86_64-linux-gnu.so gmake[4]: Leaving directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/build-real/temp.linux-x86_64-3.10' [100%] Built target cpp gmake[3]: Leaving directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/build-real/temp.linux-x86_64-3.10' /usr/bin/cmake -E cmake_progress_start /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/build-real/temp.linux-x86_64-3.10/CMakeFiles 0 gmake[2]: Leaving directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/build-real/temp.linux-x86_64-3.10' running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running install_lib copying build-real/lib.linux-x86_64-3.10/dolfinx/cpp.cpython-310-x86_64-linux-gnu.so -> /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/__init__.py to __init__.cpython-310.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/common.py to common.cpython-310.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/generation.py to generation.cpython-310.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/geometry.py to geometry.cpython-310.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/io.py to io.cpython-310.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/la.py to la.cpython-310.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/log.py to log.cpython-310.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/mesh.py to mesh.cpython-310.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/nls.py to nls.cpython-310.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/pkgconfig.py to pkgconfig.cpython-310.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/plot.py to plot.cpython-310.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/jit.py to jit.cpython-310.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem/__init__.py to __init__.cpython-310.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem/assemble.py to assemble.cpython-310.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem/dirichletbc.py to dirichletbc.cpython-310.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem/dofmap.py to dofmap.cpython-310.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem/form.py to form.cpython-310.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem/formmanipulations.py to formmanipulations.cpython-310.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem/function.py to function.cpython-310.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem/problem.py to problem.cpython-310.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/wrappers/__init__.py to __init__.cpython-310.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx_utils/test/fixtures.py to fixtures.cpython-310.pyc byte-compiling /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx_utils/test/skips.py to skips.cpython-310.pyc running install_egg_info running egg_info writing fenics_dolfinx.egg-info/PKG-INFO writing dependency_links to fenics_dolfinx.egg-info/dependency_links.txt writing requirements to fenics_dolfinx.egg-info/requires.txt writing top-level names to fenics_dolfinx.egg-info/top_level.txt reading manifest file 'fenics_dolfinx.egg-info/SOURCES.txt' writing manifest file 'fenics_dolfinx.egg-info/SOURCES.txt' removing '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/fenics_dolfinx-0.3.0.egg-info' (and everything under it) Copying fenics_dolfinx.egg-info to /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages/fenics_dolfinx-0.3.0.egg-info Skipping SOURCES.txt running install_scripts dh_auto_install -i --builddir=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-complex --destdir=debian/tmp-complex cd obj-x86_64-linux-gnu-complex && make -j10 install DESTDIR=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-complex' /usr/bin/cmake -S/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp -B/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-complex --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-complex' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-complex' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RelWithDebInfo" -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.3.0 -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.3 -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXTargets.cmake -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXTargets-relwithdebinfo.cmake -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/common/defines.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/common/dolfin_common.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/common/dolfin_doc.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/common/IndexMap.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/common/init.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/common/log.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/common/loguru.hpp -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/common/sort.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/common/MPI.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/common/subsystem.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/common/Table.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/common/Timer.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/common/TimeLogger.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/common/TimeLogManager.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/common/array2d.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/common/math.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/common/timing.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/common/types.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/common/UniqueIdGenerator.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/common/utils.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/common/version.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/fem/Constant.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/fem/CoordinateElement.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/fem/DirichletBC.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/fem/DofMap.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/fem/ElementDofLayout.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/fem/Expression.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/fem/FiniteElement.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/fem/Form.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/fem/Function.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/fem/FunctionSpace.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/fem/assembler.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/fem/assemble_matrix_impl.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/fem/assemble_scalar_impl.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/fem/assemble_vector_impl.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/fem/discreteoperators.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/fem/dofmapbuilder.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/fem/dolfin_fem.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/fem/interpolate.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/fem/petsc.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/fem/sparsitybuild.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/fem/utils.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/generation/BoxMesh.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/generation/dolfin_generation.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/generation/IntervalMesh.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/generation/RectangleMesh.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/geometry/BoundingBoxTree.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/geometry/gjk.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/geometry/dolfin_geometry.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/geometry/utils.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/graph/AdjacencyList.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/graph/boostordering.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/graph/dolfin_graph.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/graph/partitioners.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/graph/partition.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/graph/scotch.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/io/dolfin_io.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/io/cells.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/io/HDF5Interface.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/io/pugiconfig.hpp -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/io/pugixml.hpp -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/io/VTKFile.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/io/XDMFFile.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/io/xdmf_function.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/io/xdmf_mesh.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/io/xdmf_meshtags.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/io/xdmf_read.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/io/xdmf_utils.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/la/dolfin_la.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/la/PETScKrylovSolver.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/la/PETScMatrix.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/la/PETScOperator.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/la/PETScOptions.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/la/PETScVector.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/la/SLEPcEigenSolver.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/la/SparsityPattern.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/la/utils.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/la/Vector.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/la/VectorSpaceBasis.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/mesh/dolfin_mesh.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/mesh/Mesh.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/mesh/Geometry.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/mesh/Topology.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/mesh/MeshTags.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/mesh/cell_types.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/mesh/graphbuild.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/mesh/permutationcomputation.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/mesh/topologycomputation.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/mesh/utils.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/nls/dolfin_nls.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/nls/NewtonSolver.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/refinement/dolfin_refinement.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/refinement/plaza.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/refinement/refine.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/include/dolfinx/refinement/utils.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/FindPETSc.cmake -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/FindSLEPc.cmake -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfig.cmake -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfigVersion.cmake -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/pkgconfig/dolfinx_complex.pc -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/dolfinx/dolfinx.conf -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/share/dolfinx/demo -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/share/dolfinx/demo/CMakeLists.txt -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/share/dolfinx/demo/poisson -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/share/dolfinx/demo/poisson/main.cpp -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/share/dolfinx/demo/poisson/poisson.ufl -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/share/dolfinx/demo/poisson/CMakeLists.txt -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/share/dolfinx/demo/poisson/poisson.h -- Installing: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-complex/usr/share/dolfinx/demo/poisson/poisson.c ---------------------------------------------------------------------------- DOLFINx has now been installed in /usr and demo programs have been installed in /usr/share/dolfinx/demo Don't forget to update your environment variables. This can be done easily using the helper file 'dolfinx.conf' which sets the appropriate variables (for users of the Bash shell). To update your environment variables, run the following command: source /usr/lib/x86_64-linux-gnu/dolfinx/dolfinx.conf ---------------------------------------------------------------------------- make[2]: Leaving directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/obj-x86_64-linux-gnu-complex' (cd cpp/doc; doxygen) warning: Tag 'TCL_SUBST' at line 270 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 1133 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" Doxygen version used: 1.9.1 Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx Searching for files in directory /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common Searching for files in directory /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem Searching for files in directory /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/generation Searching for files in directory /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/geometry Searching for files in directory /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/graph Searching for files in directory /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io Searching for files in directory /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la Searching for files in directory /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh Searching for files in directory /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/nls Searching for files in directory /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/refinement Reading and parsing tag files Parsing files Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/array2d.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/array2d.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/defines.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/defines.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/defines.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/defines.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/dolfin_common.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/dolfin_common.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/dolfin_doc.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/dolfin_doc.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/IndexMap.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/IndexMap.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/IndexMap.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/IndexMap.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/init.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/init.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/init.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/init.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/log.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/log.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/log.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/log.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/math.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/math.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/MPI.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/MPI.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/MPI.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/MPI.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/sort.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/sort.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/subsystem.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/subsystem.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/subsystem.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/subsystem.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/Table.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/Table.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/Table.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/Table.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/TimeLogger.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/TimeLogger.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/TimeLogger.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/TimeLogger.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/TimeLogManager.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/TimeLogManager.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/TimeLogManager.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/TimeLogManager.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/Timer.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/Timer.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/Timer.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/Timer.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/timing.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/timing.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/timing.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/timing.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/types.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/types.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/UniqueIdGenerator.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/UniqueIdGenerator.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/UniqueIdGenerator.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/UniqueIdGenerator.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/utils.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/utils.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/utils.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/utils.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/version.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/version.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/dolfinx.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/dolfinx.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/assemble_matrix_impl.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/assemble_matrix_impl.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/assemble_scalar_impl.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/assemble_scalar_impl.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/assemble_vector_impl.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/assemble_vector_impl.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/assembler.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/assembler.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/Constant.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/Constant.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/CoordinateElement.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/CoordinateElement.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/CoordinateElement.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/CoordinateElement.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/DirichletBC.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/DirichletBC.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/DirichletBC.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/DirichletBC.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/discreteoperators.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/discreteoperators.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/discreteoperators.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/discreteoperators.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/DofMap.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/DofMap.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/DofMap.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/DofMap.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/dofmapbuilder.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/dofmapbuilder.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/dofmapbuilder.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/dofmapbuilder.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/dolfin_fem.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/dolfin_fem.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/ElementDofLayout.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/ElementDofLayout.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/ElementDofLayout.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/ElementDofLayout.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/Expression.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/Expression.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/FiniteElement.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/FiniteElement.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/FiniteElement.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/FiniteElement.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/Form.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/Form.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/Function.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/Function.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/FunctionSpace.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/FunctionSpace.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/FunctionSpace.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/FunctionSpace.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/interpolate.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/interpolate.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/interpolate.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/interpolate.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/petsc.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/petsc.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/petsc.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/petsc.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/sparsitybuild.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/sparsitybuild.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/sparsitybuild.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/sparsitybuild.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/utils.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/utils.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/utils.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/utils.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/generation/BoxMesh.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/generation/BoxMesh.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/generation/BoxMesh.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/generation/BoxMesh.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/generation/dolfin_generation.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/generation/dolfin_generation.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/generation/IntervalMesh.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/generation/IntervalMesh.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/generation/IntervalMesh.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/generation/IntervalMesh.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/generation/RectangleMesh.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/generation/RectangleMesh.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/generation/RectangleMesh.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/generation/RectangleMesh.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/geometry/BoundingBoxTree.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/geometry/BoundingBoxTree.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/geometry/BoundingBoxTree.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/geometry/BoundingBoxTree.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/geometry/dolfin_geometry.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/geometry/dolfin_geometry.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/geometry/gjk.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/geometry/gjk.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/geometry/gjk.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/geometry/gjk.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/geometry/utils.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/geometry/utils.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/geometry/utils.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/geometry/utils.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/graph/AdjacencyList.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/graph/AdjacencyList.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/graph/boostordering.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/graph/boostordering.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/graph/boostordering.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/graph/boostordering.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/graph/dolfin_graph.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/graph/dolfin_graph.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/graph/partition.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/graph/partition.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/graph/partition.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/graph/partition.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/graph/partitioners.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/graph/partitioners.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/graph/partitioners.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/graph/partitioners.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/graph/scotch.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/graph/scotch.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/graph/scotch.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/graph/scotch.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/cells.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/cells.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/cells.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/cells.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/dolfin_io.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/dolfin_io.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/HDF5Interface.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/HDF5Interface.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/HDF5Interface.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/HDF5Interface.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/pugiconfig.hpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/pugiconfig.hpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/VTKFile.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/VTKFile.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/VTKFile.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/VTKFile.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/xdmf_function.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/xdmf_function.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/xdmf_function.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/xdmf_function.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/xdmf_mesh.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/xdmf_mesh.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/xdmf_mesh.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/xdmf_mesh.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/xdmf_meshtags.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/xdmf_meshtags.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/xdmf_read.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/xdmf_read.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/xdmf_utils.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/xdmf_utils.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/xdmf_utils.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/xdmf_utils.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/XDMFFile.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/XDMFFile.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/XDMFFile.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/XDMFFile.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/dolfin_la.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/dolfin_la.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/PETScKrylovSolver.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/PETScKrylovSolver.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/PETScKrylovSolver.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/PETScKrylovSolver.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/PETScMatrix.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/PETScMatrix.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/PETScMatrix.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/PETScMatrix.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/PETScOperator.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/PETScOperator.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/PETScOperator.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/PETScOperator.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/PETScOptions.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/PETScOptions.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/PETScOptions.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/PETScOptions.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/PETScVector.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/PETScVector.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/PETScVector.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/PETScVector.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/SLEPcEigenSolver.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/SLEPcEigenSolver.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/SLEPcEigenSolver.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/SLEPcEigenSolver.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/SparsityPattern.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/SparsityPattern.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/SparsityPattern.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/SparsityPattern.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/utils.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/utils.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/Vector.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/Vector.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/VectorSpaceBasis.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/VectorSpaceBasis.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/VectorSpaceBasis.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/VectorSpaceBasis.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/cell_types.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/cell_types.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/cell_types.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/cell_types.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/dolfin_mesh.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/dolfin_mesh.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/Geometry.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/Geometry.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/Geometry.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/Geometry.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/graphbuild.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/graphbuild.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/graphbuild.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/graphbuild.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/Mesh.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/Mesh.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/Mesh.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/Mesh.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/MeshTags.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/MeshTags.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/permutationcomputation.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/permutationcomputation.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/permutationcomputation.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/permutationcomputation.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/Topology.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/Topology.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/Topology.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/Topology.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/topologycomputation.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/topologycomputation.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/topologycomputation.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/topologycomputation.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/utils.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/utils.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/utils.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/utils.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/nls/dolfin_nls.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/nls/dolfin_nls.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/nls/NewtonSolver.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/nls/NewtonSolver.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/nls/NewtonSolver.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/nls/NewtonSolver.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/refinement/dolfin_refinement.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/refinement/dolfin_refinement.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/refinement/plaza.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/refinement/plaza.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/refinement/plaza.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/refinement/plaza.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/refinement/refine.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/refinement/refine.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/refinement/refine.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/refinement/refine.h... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/refinement/utils.cpp... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/refinement/utils.cpp... Preprocessing /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/refinement/utils.h... Parsing file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/refinement/utils.h... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Computing nesting relations for classes... Associating documentation with classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/array2d.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/defines.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/dolfin_common.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/dolfin_doc.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/IndexMap.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/init.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/log.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/math.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/MPI.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/sort.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/subsystem.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/Table.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/TimeLogger.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/TimeLogManager.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/Timer.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/timing.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/types.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/UniqueIdGenerator.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/utils.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/utils.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/geometry/utils.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/utils.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/utils.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/refinement/utils.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/common/version.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/dolfinx.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/assemble_matrix_impl.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/assemble_scalar_impl.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/assemble_vector_impl.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/assembler.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/Constant.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/CoordinateElement.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/DirichletBC.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/discreteoperators.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/DofMap.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/dofmapbuilder.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/dolfin_fem.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/ElementDofLayout.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/Expression.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/FiniteElement.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/Form.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/Function.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/FunctionSpace.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/interpolate.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/petsc.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/fem/sparsitybuild.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/generation/BoxMesh.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/generation/dolfin_generation.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/generation/IntervalMesh.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/generation/RectangleMesh.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/geometry/BoundingBoxTree.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/geometry/dolfin_geometry.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/geometry/gjk.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/graph/AdjacencyList.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/graph/boostordering.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/graph/dolfin_graph.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/graph/partition.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/graph/partitioners.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/graph/scotch.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/cells.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/dolfin_io.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/HDF5Interface.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/pugiconfig.hpp... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/VTKFile.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/xdmf_function.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/xdmf_mesh.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/xdmf_meshtags.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/xdmf_read.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/xdmf_utils.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/io/XDMFFile.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/dolfin_la.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/PETScKrylovSolver.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/PETScMatrix.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/PETScOperator.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/PETScOptions.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/PETScVector.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/SLEPcEigenSolver.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/SparsityPattern.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/Vector.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/la/VectorSpaceBasis.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/cell_types.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/dolfin_mesh.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/Geometry.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/graphbuild.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/Mesh.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/MeshTags.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/permutationcomputation.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/Topology.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/mesh/topologycomputation.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/nls/dolfin_nls.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/nls/NewtonSolver.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/refinement/dolfin_refinement.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/refinement/plaza.h... Generating code for file /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/cpp/dolfinx/refinement/refine.h... Generating file documentation... Generating page documentation... Generating docs for page todo... Generating group documentation... Generating class documentation... Generating namespace index... Generating docs for compound dolfinx::array2d... Generating docs for compound dolfinx::Table... Generating docs for namespace dolfinx::common Generating docs for compound dolfinx::common::IndexMap... Generating docs for compound dolfinx::common::TimeLogger... Generating docs for compound dolfinx::common::TimeLogManager... Generating docs for compound dolfinx::common::Timer... Generating docs for compound dolfinx::common::UniqueIdGenerator... Generating docs for namespace dolfinx::common::subsystem Generating docs for namespace dolfinx::fem Generating docs for compound dolfinx::fem::DirichletBC... Generating docs for compound dolfinx::fem::Form... Generating docs for compound dolfinx::fem::Constant... Generating docs for compound dolfinx::fem::CoordinateElement... Generating docs for compound dolfinx::fem::DofMap... Generating docs for compound dolfinx::fem::ElementDofLayout... Generating docs for compound dolfinx::fem::Expression... Generating docs for compound dolfinx::fem::FiniteElement... Generating docs for compound dolfinx::fem::Function... Generating docs for compound dolfinx::fem::FunctionSpace... Generating docs for namespace dolfinx::fem::sparsitybuild Generating docs for compound dolfinx::function::Function... Generating docs for namespace dolfinx::generation Generating docs for namespace dolfinx::generation::BoxMesh Generating docs for namespace dolfinx::generation::IntervalMesh Generating docs for namespace dolfinx::generation::RectangleMesh Generating docs for namespace dolfinx::geometry Generating docs for compound dolfinx::geometry::BoundingBoxTree... Generating docs for namespace dolfinx::graph Generating docs for compound dolfinx::graph::AdjacencyList... Generating docs for namespace dolfinx::graph::build Generating docs for namespace dolfinx::graph::kahip Generating docs for namespace dolfinx::graph::scotch Generating docs for namespace dolfinx::io Generating docs for compound dolfinx::io::HDF5Interface... Generating docs for compound dolfinx::io::VTKFile... Generating docs for compound dolfinx::io::XDMFFile... Generating docs for namespace dolfinx::io::cells Generating docs for namespace dolfinx::io::xdmf_function Generating docs for namespace dolfinx::io::xdmf_mesh Generating docs for namespace dolfinx::io::xdmf_read Generating docs for namespace dolfinx::la Generating docs for compound dolfinx::la::PETScKrylovSolver... Generating docs for compound dolfinx::la::PETScMatrix... Generating docs for compound dolfinx::la::PETScOperator... Generating docs for compound dolfinx::la::PETScOptions... Generating docs for compound dolfinx::la::PETScVector... Generating docs for compound dolfinx::la::SparsityPattern... Generating docs for compound dolfinx::la::Vector... Generating docs for compound dolfinx::la::VectorSpaceBasis... Generating docs for namespace dolfinx::mesh Generating docs for compound dolfinx::mesh::MeshTags... Generating docs for compound dolfinx::mesh::Geometry... Generating docs for compound dolfinx::mesh::Mesh... Generating docs for compound dolfinx::mesh::Topology... Generating docs for namespace dolfinx::MPI Generating docs for compound dolfinx::MPI::Comm... Generating docs for compound dolfinx::MPI::dependent_false... Generating docs for namespace dolfinx::nls Generating docs for compound dolfinx::nls::NewtonSolver... Generating docs for namespace dolfinx::refinement Generating docs for namespace dolfinx::refinement::plaza Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating graphical class hierarchy... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... Running dot... Generating dot graphs using 11 parallel threads... Running dot for graph 1/48 Running dot for graph 2/48 Running dot for graph 3/48 Running dot for graph 4/48 Running dot for graph 5/48 Running dot for graph 6/48 Running dot for graph 7/48 Running dot for graph 8/48 Running dot for graph 9/48 Running dot for graph 10/48 Running dot for graph 11/48 Running dot for graph 12/48 Running dot for graph 13/48 Running dot for graph 14/48 Running dot for graph 15/48 Running dot for graph 16/48 Running dot for graph 17/48 Running dot for graph 18/48 Running dot for graph 19/48 Running dot for graph 20/48 Running dot for graph 21/48 Running dot for graph 22/48 Running dot for graph 23/48 Running dot for graph 24/48 Running dot for graph 25/48 Running dot for graph 26/48 Running dot for graph 27/48 Running dot for graph 28/48 Running dot for graph 29/48 Running dot for graph 30/48 Running dot for graph 31/48 Running dot for graph 32/48 Running dot for graph 33/48 Running dot for graph 34/48 Running dot for graph 35/48 Running dot for graph 36/48 Running dot for graph 37/48 Running dot for graph 38/48 Running dot for graph 39/48 Running dot for graph 40/48 Running dot for graph 41/48 Running dot for graph 42/48 Running dot for graph 43/48 Running dot for graph 44/48 Running dot for graph 45/48 Running dot for graph 46/48 Running dot for graph 47/48 Running dot for graph 48/48 Patching output file 1/7 Patching output file 2/7 Patching output file 3/7 Patching output file 4/7 Patching output file 5/7 Patching output file 6/7 Patching output file 7/7 lookup cache used 2401/65536 hits=18589 misses=2474 finished... (cd python/doc; \ python3 ../demo/generate-demo-files.py; \ mkdir -p build/pkgconfig; \ cp /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/pkgconfig/dolfinx_real.pc build/pkgconfig; \ sed "s|prefix=/usr|prefix=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr|" -i build/pkgconfig/dolfinx_real.pc; \ PYTHONPATH=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/python3/dist-packages \ PKG_CONFIG_PATH=`pwd`/build/pkgconfig:${PKG_CONFIG_PATH} \ LD_LIBRARY_PATH=/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/:${LD_LIBRARY_PATH} \ RDMAV_FORK_SAFE=1 \ make html; \ find ../demo/ -name *.py.rst | xargs rm) extract written to /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/demo/cahn-hilliard/demo_cahn-hilliard.py.rst extract written to /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/demo/elasticity/demo_elasticity.py.rst extract written to /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/demo/gmsh/demo_gmsh.py.rst extract written to /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/demo/helmholtz2D/demo_helmholtz_2d.py.rst extract written to /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/demo/mixed-elasticity-sc/static-condensation-elasticity.py.rst extract written to /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/demo/poisson/demo_poisson.py.rst extract written to /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/demo/pyvista/demo_pyvista.py.rst extract written to /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/demo/stokes-taylor-hood/demo_stokes-taylor-hood.py.rst Converting py files in in /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/demo/cahn-hilliard/ ... Converting py files in in /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/demo/elasticity/ ... Converting py files in in /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/demo/gmsh/ ... Converting py files in in /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/demo/helmholtz2D/ ... Converting py files in in /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/demo/mixed-elasticity-sc/ ... Converting py files in in /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/demo/poisson/ ... Converting py files in in /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/demo/pyvista/ ... Converting py files in in /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/demo/stokes-taylor-hood/ ... make[2]: Entering directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/doc' Running Sphinx v4.3.2 making output directory... done [autosummary] generating autosummary for: api.rst, contributing.rst, demos.rst, demos/cahn-hilliard/demo_cahn-hilliard.py.rst, demos/elasticity/demo_elasticity.py.rst, demos/gmsh/demo_gmsh.py.rst, demos/helmholtz2D/demo_helmholtz_2d.py.rst, demos/mixed-elasticity-sc/static-condensation-elasticity.py.rst, demos/poisson/demo_poisson.py.rst, demos/pyvista/demo_pyvista.py.rst, demos/stokes-taylor-hood/demo_stokes-taylor-hood.py.rst, developer.rst, index.rst, installation.rst, styleguide_cpp.rst [autosummary] generating autosummary for: /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/doc/source/generated/dolfinx.common.rst, /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/doc/source/generated/dolfinx.cpp.common.rst, /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/doc/source/generated/dolfinx.cpp.fem.rst, /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/doc/source/generated/dolfinx.cpp.generation.rst, /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/doc/source/generated/dolfinx.cpp.geometry.rst, /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/doc/source/generated/dolfinx.cpp.graph.rst, /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/doc/source/generated/dolfinx.cpp.io.rst, /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/doc/source/generated/dolfinx.cpp.log.rst, /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/doc/source/generated/dolfinx.cpp.mesh.rst, /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/doc/source/generated/dolfinx.cpp.refinement.rst, /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/doc/source/generated/dolfinx.fem.rst, /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/doc/source/generated/dolfinx.generation.rst, /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/doc/source/generated/dolfinx.io.rst, /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/doc/source/generated/dolfinx.jit.rst, /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/doc/source/generated/dolfinx.la.rst, /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/doc/source/generated/dolfinx.mesh.rst, /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/doc/source/generated/dolfinx.pkgconfig.rst, /build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/doc/source/generated/dolfinx.plot.rst building [mo]: targets for 0 po files that are out of date building [html]: targets for 15 source files that are out of date updating environment: [new config] 33 added, 0 changed, 0 removed reading sources... [ 3%] api reading sources... [ 6%] contributing reading sources... [ 9%] demos reading sources... [ 12%] demos/cahn-hilliard/demo_cahn-hilliard.py reading sources... [ 15%] demos/elasticity/demo_elasticity.py reading sources... [ 18%] demos/gmsh/demo_gmsh.py reading sources... [ 21%] demos/helmholtz2D/demo_helmholtz_2d.py reading sources... [ 24%] demos/mixed-elasticity-sc/static-condensation-elasticity.py reading sources... [ 27%] demos/poisson/demo_poisson.py reading sources... [ 30%] demos/pyvista/demo_pyvista.py reading sources... [ 33%] demos/stokes-taylor-hood/demo_stokes-taylor-hood.py reading sources... [ 36%] developer reading sources... [ 39%] generated/dolfinx.common reading sources... [ 42%] generated/dolfinx.cpp.common reading sources... [ 45%] generated/dolfinx.cpp.fem reading sources... [ 48%] generated/dolfinx.cpp.generation reading sources... [ 51%] generated/dolfinx.cpp.geometry reading sources... [ 54%] generated/dolfinx.cpp.graph reading sources... [ 57%] generated/dolfinx.cpp.io reading sources... [ 60%] generated/dolfinx.cpp.log reading sources... [ 63%] generated/dolfinx.cpp.mesh reading sources... [ 66%] generated/dolfinx.cpp.refinement reading sources... [ 69%] generated/dolfinx.fem reading sources... [ 72%] generated/dolfinx.generation reading sources... [ 75%] generated/dolfinx.io reading sources... [ 78%] generated/dolfinx.jit reading sources... [ 81%] generated/dolfinx.la reading sources... [ 84%] generated/dolfinx.mesh reading sources... [ 87%] generated/dolfinx.pkgconfig reading sources... [ 90%] generated/dolfinx.plot reading sources... [ 93%] index reading sources... [ 96%] installation reading sources... [100%] styleguide_cpp looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 3%] api writing output... [ 6%] contributing writing output... [ 9%] demos writing output... [ 12%] demos/cahn-hilliard/demo_cahn-hilliard.py writing output... [ 15%] demos/elasticity/demo_elasticity.py writing output... [ 18%] demos/gmsh/demo_gmsh.py writing output... [ 21%] demos/helmholtz2D/demo_helmholtz_2d.py writing output... [ 24%] demos/mixed-elasticity-sc/static-condensation-elasticity.py writing output... [ 27%] demos/poisson/demo_poisson.py writing output... [ 30%] demos/pyvista/demo_pyvista.py writing output... [ 33%] demos/stokes-taylor-hood/demo_stokes-taylor-hood.py writing output... [ 36%] developer writing output... [ 39%] generated/dolfinx.common writing output... [ 42%] generated/dolfinx.cpp.common writing output... [ 45%] generated/dolfinx.cpp.fem writing output... [ 48%] generated/dolfinx.cpp.generation writing output... [ 51%] generated/dolfinx.cpp.geometry writing output... [ 54%] generated/dolfinx.cpp.graph writing output... [ 57%] generated/dolfinx.cpp.io writing output... [ 60%] generated/dolfinx.cpp.log writing output... [ 63%] generated/dolfinx.cpp.mesh writing output... [ 66%] generated/dolfinx.cpp.refinement writing output... [ 69%] generated/dolfinx.fem writing output... [ 72%] generated/dolfinx.generation writing output... [ 75%] generated/dolfinx.io writing output... [ 78%] generated/dolfinx.jit writing output... [ 81%] generated/dolfinx.la writing output... [ 84%] generated/dolfinx.mesh writing output... [ 87%] generated/dolfinx.pkgconfig writing output... [ 90%] generated/dolfinx.plot writing output... [ 93%] index writing output... [ 96%] installation writing output... [100%] styleguide_cpp generating indices... genindex py-modindex done highlighting module code... [ 4%] dolfinx.common highlighting module code... [ 8%] dolfinx.cpp.common highlighting module code... [ 12%] dolfinx.cpp.fem highlighting module code... [ 16%] dolfinx.cpp.generation highlighting module code... [ 20%] dolfinx.cpp.geometry highlighting module code... [ 25%] dolfinx.cpp.graph highlighting module code... [ 29%] dolfinx.cpp.io highlighting module code... [ 33%] dolfinx.cpp.la highlighting module code... [ 37%] dolfinx.cpp.log highlighting module code... [ 41%] dolfinx.cpp.mesh highlighting module code... [ 45%] dolfinx.cpp.refinement highlighting module code... [ 50%] dolfinx.fem.assemble highlighting module code... [ 54%] dolfinx.fem.dirichletbc highlighting module code... [ 58%] dolfinx.fem.dofmap highlighting module code... [ 62%] dolfinx.fem.form highlighting module code... [ 66%] dolfinx.fem.formmanipulations highlighting module code... [ 70%] dolfinx.fem.function highlighting module code... [ 75%] dolfinx.fem.problem highlighting module code... [ 79%] dolfinx.generation highlighting module code... [ 83%] dolfinx.io highlighting module code... [ 87%] dolfinx.jit highlighting module code... [ 91%] dolfinx.mesh highlighting module code... [ 95%] dolfinx.pkgconfig highlighting module code... [100%] dolfinx.plot writing additional pages... search done copying images... [100%] demos/poisson/poisson_u.png copying downloadable files... [ 50%] demos/cahn-hilliard/demo_cahn-hilliard.py copying downloadable files... [100%] demos/poisson/demo_poisson.py copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded. The HTML pages are in build/html. make[2]: Leaving directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0/python/doc' dh_numpy3 -i make[1]: Leaving directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0' dh_install -i -O--buildsystem=cmake dh_installdocs -i -O--buildsystem=cmake dh_installdocs: warning: Cannot auto-detect main package for dolfinx-doc. If the default is wrong, please use --doc-main-package dh_sphinxdoc -i -O--buildsystem=cmake dh_installchangelogs -i -O--buildsystem=cmake dh_python3 -i -O--buildsystem=cmake E: dh_python3 dh_python3:176: no package to act on (python3-foo or one with ${python3:Depends} in Depends) dh_installsystemduser -i -O--buildsystem=cmake dh_perl -i -O--buildsystem=cmake dh_link -i -O--buildsystem=cmake dh_strip_nondeterminism -i -O--buildsystem=cmake debian/rules override_dh_compress make[1]: Entering directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0' py3versions: no X-Python3-Version in control file, using supported versions dh_compress -X.py -X.cpp -X.h -X.pdf -X.ufl make[1]: Leaving directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0' dh_fixperms -i -O--buildsystem=cmake dh_missing -i -O--buildsystem=cmake dh_installdeb -i -O--buildsystem=cmake debian/rules override_dh_gencontrol make[1]: Entering directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0' py3versions: no X-Python3-Version in control file, using supported versions echo "python3-petsc4py-real:Depends=python3-petsc4py, python3-slepc4py, python3-petsc4py-real (>= 3.15), python3-petsc4py-real (<< 3.16), python3-slepc4py-real (>= 3.15), python3-slepc4py-real (<< 3.16)" >> debian/python3-dolfinx-real.substvars echo "python3-petsc4py-complex:Depends=python3-petsc4py, python3-slepc4py, python3-petsc4py-complex (>= 3.15), python3-petsc4py-complex (<< 3.16), python3-slepc4py-complex (>= 3.15), python3-slepc4py-complex (<< 3.16)" >> debian/python3-dolfinx-complex.substvars echo "python-petsc4py-alt:Depends=python3-petsc4py, python3-slepc4py, python3-petsc4py-real (>= 3.15), python3-petsc4py-real (<< 3.16), python3-slepc4py-real (>= 3.15), python3-slepc4py-real (<< 3.16)" >> debian/libdolfinx-dev.substvars dh_gencontrol -- -Vpetsc:Depends="libpetsc-real3.15-dev, libslepc-real3.15-dev" -Vpetsc-complex:Depends="libpetsc-complex3.15-dev, libslepc-complex3.15-dev" -Vdolfinx:Next-Upstream-Version=1:0.4~ \ -Vpybind11:Upstream-Version=2.9 -Vpybind11:Next-Upstream-Version=3 dpkg-gencontrol: warning: package dolfinx-doc: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package dolfinx-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined make[1]: Leaving directory '/build/fenics-dolfinx-1Ymcqs/fenics-dolfinx-0.3.0' dh_md5sums -i -O--buildsystem=cmake dh_builddeb -i -O--buildsystem=cmake dpkg-deb: building package 'dolfinx-doc' in '../dolfinx-doc_0.3.0-13_all.deb'. dpkg-genbuildinfo --build=all -O../fenics-dolfinx_0.3.0-13_all.buildinfo dpkg-genchanges --build=all -O../fenics-dolfinx_0.3.0-13_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/fenics-dolfinx-1Ymcqs /tmp/fenics-dolfinx-0.3.0-1307_izg61 I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.vzpPnEYWMR... I: success in 1476.0952 seconds md5: Value of 'md5' differs for dolfinx-doc_0.3.0-13_all.deb md5: Size differs for dolfinx-doc_0.3.0-13_all.deb sha1: Value of 'sha1' differs for dolfinx-doc_0.3.0-13_all.deb sha1: Size differs for dolfinx-doc_0.3.0-13_all.deb sha256: Value of 'sha256' differs for dolfinx-doc_0.3.0-13_all.deb sha256: Size differs for dolfinx-doc_0.3.0-13_all.deb Checksums: FAIL Cannot generate diffoscope for dolfinx-doc_0.3.0-13_all.deb: RetryError[]