Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/f/fastqtl/fastqtl_2.184+dfsg-8_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/fastqtl-2.184+dfsg-8srep9m4g/fastqtl_2.184+dfsg-8_all.buildinfo Get source package info: fastqtl=2.184+dfsg-8 Source URL: http://snapshot.notset.fr/mr/package/fastqtl/2.184+dfsg-8/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.5-1 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.52 bash=5.1-3+b2 binutils=2.37-7 binutils-common=2.37-7 binutils-x86-64-linux-gnu=2.37-7 bsdextrautils=2.37.2-4 bsdutils=1:2.37.2-4 build-essential=12.9 bzip2=1.0.8-4 coreutils=8.32-4+b1 cpp=4:11.2.0-2 cpp-11=11.2.0-9 dash=0.5.11+git20210120+802ebd4-1 debconf=1.5.77 debhelper=13.5.2 debianutils=5.5-1 dh-autoreconf=20 dh-strip-nondeterminism=1.12.0-2 diffutils=1:3.7-5 dpkg=1.20.9 dpkg-dev=1.20.9 dwz=0.14-1 file=1:5.39-3 findutils=4.8.0-1 g++=4:11.2.0-2 g++-11=11.2.0-9 gcc=4:11.2.0-2 gcc-10-base=10.3.0-11 gcc-11=11.2.0-9 gcc-11-base=11.2.0-9 gettext=0.21-4 gettext-base=0.21-4 grep=3.7-1 groff-base=1.22.4-7 gzip=1.10-4 hostname=3.23 icu-devtools=67.1-7 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libarchive-zip-perl=1.68-1 libasan6=11.2.0-9 libatomic1=11.2.0-9 libattr1=1:2.5.1-1 libaudit-common=1:3.0.6-1 libaudit1=1:3.0.6-1 libbinutils=2.37-7 libblas-dev=3.10.0-1 libblas3=3.10.0-1 libblkid1=2.37.2-4 libboost-dev=1.74.0.3 libboost-iostreams-dev=1.74.0.3 libboost-iostreams1.74-dev=1.74.0-11 libboost-iostreams1.74.0=1.74.0-11 libboost-program-options-dev=1.74.0.3 libboost-program-options1.74-dev=1.74.0-11 libboost-program-options1.74.0=1.74.0-11 libboost-regex1.74-dev=1.74.0-11 libboost-regex1.74.0=1.74.0-11 libboost1.74-dev=1.74.0-11 libbrotli1=1.0.9-2+b2 libbz2-1.0=1.0.8-4 libc-bin=2.32-4 libc-dev-bin=2.32-4 libc6=2.32-4 libc6-dev=2.32-4 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcc1-0=11.2.0-9 libcom-err2=1.46.4-1 libcrypt-dev=1:4.4.25-2 libcrypt1=1:4.4.25-2 libctf-nobfd0=2.37-7 libctf0=2.37-7 libcurl3-gnutls=7.74.0-1.3+b1 libcurl4-gnutls-dev=7.74.0-1.3+b1 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.260 libdebhelper-perl=13.5.2 libdeflate-dev=1.8-1 libdeflate0=1.8-1 libdpkg-perl=1.20.9 libeigen3-dev=3.3.9-2 libelf1=0.185-2 libffi8=3.4.2-3 libfile-stripnondeterminism-perl=1.12.0-2 libgcc-10-dev=10.3.0-11 libgcc-11-dev=11.2.0-9 libgcc-s1=11.2.0-9 libgcrypt20=1.9.4-3+b1 libgdbm-compat4=1.22-1 libgdbm6=1.22-1 libglib2.0-0=2.70.0-1+b1 libgmp10=2:6.2.1+dfsg-2 libgnutls30=3.7.2-2 libgomp1=11.2.0-9 libgpg-error0=1.42-3 libgsl-dev=2.7+dfsg-2 libgsl25=2.7+dfsg-2 libgslcblas0=2.7+dfsg-2 libgssapi-krb5-2=1.18.3-7 libhogweed6=3.7.3-1 libhts-dev=1.13+ds-2 libhts3=1.13+ds-2 libhtscodecs2=1.1.1-3+b1 libicu-dev=67.1-7 libicu67=67.1-7 libidn2-0=2.3.2-2 libisl23=0.24-2 libitm1=11.2.0-9 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 libldap-2.4-2=2.4.59+dfsg-1 liblsan0=11.2.0-9 liblz4-1=1.9.3-2 liblzma-dev=5.2.5-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmount1=2.37.2-4 libmpc3=1.2.1-1 libmpfr6=4.1.0-3 libnettle8=3.7.3-1 libnghttp2-14=1.43.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libp11-kit0=0.24.0-5 libpam-modules=1.4.0-10 libpam-modules-bin=1.4.0-10 libpam-runtime=1.4.0-10 libpam0g=1.4.0-10 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.1-6 libpipeline1=1.5.3-1 libpsl5=0.21.0-1.2 libquadmath0=11.2.0-9 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg-2.1 libsasl2-modules-db=2.1.27+dfsg-2.1 libseccomp2=2.5.2-2 libselinux1=3.1-3 libsigsegv2=2.13-1 libsmartcols1=2.37.2-4 libssh2-1=1.10.0-2 libssl1.1=1.1.1l-1 libstdc++-10-dev=10.3.0-11 libstdc++-11-dev=11.2.0-9 libstdc++6=11.2.0-9 libsub-override-perl=0.09-2 libsystemd0=249.5-1 libtasn1-6=4.17.0-2 libtinfo6=6.2+20210905-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtsan0=11.2.0-9 libubsan1=11.2.0-9 libuchardet0=0.0.7-1 libudev1=249.5-1 libunistring2=0.9.10-6 libuuid1=2.37.2-4 libxml2=2.9.12+dfsg-5 libzstd1=1.4.8+dfsg-3 linux-libc-dev=5.14.12-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-2 mawk=1.3.4.20200120-2 ncurses-base=6.2+20210905-1 ncurses-bin=6.2+20210905-1 patch=2.7.6-7 perl=5.32.1-6 perl-base=5.32.1-6 perl-modules-5.32=5.32.1-6 pkg-config=0.29.2-1 po-debconf=1.0.21+nmu1 r-mathlib=4.1.1-2 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.00-1 tar=1.34+dfsg-1 util-linux=2.37.2-4 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211028T024824Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211028T024824Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211116T090124Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20211021T154134Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d fastqtl=2.184+dfsg-8 && mkdir -p /build/fastqtl-K7pd7K && dpkg-source --no-check -x /*.dsc /build/fastqtl-K7pd7K/fastqtl-2.184+dfsg && chown -R builduser:builduser /build/fastqtl-K7pd7K" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/fastqtl-K7pd7K/fastqtl-2.184+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1634993098" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/fastqtl-K7pd7K /tmp/fastqtl-2.184+dfsg-8srep9m4g bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20211021T154134Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.eFFld7Z7b0 as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.eFFld7Z7b0 Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-4). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20211021T154134Z unstable/main amd64 libfakeroot amd64 1.26-1 [47.3 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211021T154134Z unstable/main amd64 fakeroot amd64 1.26-1 [87.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1003 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4666 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.26-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.26-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.26-1_amd64.deb ... Unpacking fakeroot (1.26-1) ... Setting up libfakeroot:amd64 (1.26-1) ... Setting up fakeroot (1.26-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.32-4) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211028T024824Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211028T024824Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211116T090124Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20211021T154134Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.eFFld7Z7b0 Get:1 http://snapshot.notset.fr/archive/debian/20211028T024824Z bookworm InRelease [128 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211116T090124Z unstable InRelease [165 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20211021T154134Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20211028T024824Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20211028T024824Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20211028T024824Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20211028T024824Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20211028T024824Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20211028T024824Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20211028T024824Z bookworm/main Sources [11.7 MB] Get:5 http://snapshot.notset.fr/archive/debian/20211028T024824Z bookworm/main amd64 Packages [11.2 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20211116T090124Z unstable/main amd64 Packages Err:6 http://snapshot.notset.fr/archive/debian/20211116T090124Z unstable/main amd64 Packages 404 Not Found [IP: 10.13.0.253 80] Ign:6 http://snapshot.notset.fr/archive/debian/20211116T090124Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20211116T090124Z unstable/main amd64 Packages [12.0 MB] Fetched 35.1 MB in 29s (1219 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.eFFld7Z7b0 I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d fastqtl=2.184+dfsg-8 && mkdir -p /build/fastqtl-K7pd7K && dpkg-source --no-check -x /*.dsc /build/fastqtl-K7pd7K/fastqtl-2.184+dfsg && chown -R builduser:builduser /build/fastqtl-K7pd7K"' exec /tmp/mmdebstrap.eFFld7Z7b0 Reading package lists... NOTICE: 'fastqtl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/fastqtl.git Please use: git clone https://salsa.debian.org/med-team/fastqtl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 17.1 MB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20211028T024824Z bookworm/main fastqtl 2.184+dfsg-8 (dsc) [2188 B] Get:2 http://snapshot.notset.fr/archive/debian/20211028T024824Z bookworm/main fastqtl 2.184+dfsg-8 (tar) [17.1 MB] Get:3 http://snapshot.notset.fr/archive/debian/20211028T024824Z bookworm/main fastqtl 2.184+dfsg-8 (diff) [19.8 kB] Fetched 17.1 MB in 14s (1270 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'fastqtl_2.184+dfsg-8.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting fastqtl in /build/fastqtl-K7pd7K/fastqtl-2.184+dfsg dpkg-source: info: unpacking fastqtl_2.184+dfsg.orig.tar.xz dpkg-source: info: unpacking fastqtl_2.184+dfsg-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_Makefile_dynamic_hardenings.patch dpkg-source: info: applying 02_Replace_libtabix_by_libhts.patch dpkg-source: info: applying 03_Reproducible_builds.patch dpkg-source: info: applying cross.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/fastqtl-K7pd7K/fastqtl-2.184+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1634993098" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.eFFld7Z7b0 dpkg-buildpackage: info: source package fastqtl dpkg-buildpackage: info: source version 2.184+dfsg-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . debian/rules clean dh clean dh_auto_clean make -j10 clean make[1]: Entering directory '/build/fastqtl-K7pd7K/fastqtl-2.184+dfsg' rm -f obj/*.o bin/fastQTL make[1]: Leaving directory '/build/fastqtl-K7pd7K/fastqtl-2.184+dfsg' dh_clean debian/rules binary-indep dh binary-indep dh_update_autotools_config -i dh_autoreconf -i dh_auto_configure -i debian/rules override_dh_auto_build make[1]: Entering directory '/build/fastqtl-K7pd7K/fastqtl-2.184+dfsg' mkdir -p /build/fastqtl-K7pd7K/fastqtl-2.184+dfsg/obj/ mkdir -p /build/fastqtl-K7pd7K/fastqtl-2.184+dfsg/bin/ dh_auto_build -- CXXFLAGS='-g -ffile-prefix-map=/build/fastqtl-K7pd7K/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14' make -j10 "INSTALL=install --strip-program=true" "CXXFLAGS=-g -ffile-prefix-map=/build/fastqtl-K7pd7K/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14" make[2]: Entering directory '/build/fastqtl-K7pd7K/fastqtl-2.184+dfsg' g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-K7pd7K/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisMapping.o -c src/analysisMapping.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-K7pd7K/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisNominal.o -c src/analysisNominal.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-K7pd7K/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutation.o -c src/analysisPermutation.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-K7pd7K/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutationInteraction.o -c src/analysisPermutationInteraction.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-K7pd7K/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutationPerGroup.o -c src/analysisPermutationPerGroup.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-K7pd7K/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutationSequence.o -c src/analysisPermutationSequence.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-K7pd7K/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/commands.o -c src/commands.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-K7pd7K/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/df.o -c src/df.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-K7pd7K/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/fastQTL.o -c src/fastQTL.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-K7pd7K/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/management.o -c src/management.cpp -Isrc In file included from src/analysisPermutationInteraction.cpp:17: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:170:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 170 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:9: note: here 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:171:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:9: note: here 172 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ In file included from src/analysisMapping.cpp:17: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:170:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 170 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:9: note: here 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:171:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:9: note: here 172 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-K7pd7K/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/mle.o -c src/mle.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-K7pd7K/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readCovariates.o -c src/readCovariates.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-K7pd7K/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readGenotypes.o -c src/readGenotypes.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-K7pd7K/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readGroups.o -c src/readGroups.cpp -Isrc In file included from src/analysisNominal.cpp:17: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:170:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 170 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:9: note: here 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:171:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:9: note: here 172 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ In file included from src/management.cpp:20: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:170:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 170 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:9: note: here 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:171:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:9: note: here 172 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ In file included from src/analysisPermutationPerGroup.cpp:17: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:170:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 170 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:9: note: here 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:171:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:9: note: here 172 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ In file included from src/analysisPermutationSequence.cpp:17: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:170:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 170 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:9: note: here 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:171:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:9: note: here 172 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ In file included from src/analysisPermutation.cpp:17: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:170:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 170 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:9: note: here 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:171:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:9: note: here 172 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-K7pd7K/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readInclusionsExclusions.o -c src/readInclusionsExclusions.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-K7pd7K/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readInteractions.o -c src/readInteractions.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-K7pd7K/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readPhenotypes.o -c src/readPhenotypes.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-K7pd7K/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readThresholds.o -c src/readThresholds.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-K7pd7K/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/residualizer.o -c src/residualizer.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-K7pd7K/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/tabix.o -c src/utils/tabix.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-K7pd7K/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/utils.o -c src/utils/utils.cpp -Isrc src/utils/tabix.cpp: In constructor ‘Tabix::Tabix(std::string&)’: src/utils/tabix.cpp:17:22: warning: ‘int bgzf_is_bgzf(const char*)’ is deprecated: Use bgzf_compression() or hts_detect_format() instead [-Wdeprecated-declarations] 17 | if ( bgzf_is_bgzf(cfilename)!=1 ) | ~~~~~~~~~~~~^~~~~~~~~~~ In file included from src/utils/tabix.hpp:12, from src/utils/tabix.cpp:6: /usr/include/htslib/bgzf.h:263:9: note: declared here 263 | int bgzf_is_bgzf(const char *fn) HTS_DEPRECATED("Use bgzf_compression() or hts_detect_format() instead"); | ^~~~~~~~~~~~ g++ -O3 -Wl,-z,relro -Wl,-z,now obj/analysisMapping.o obj/analysisNominal.o obj/analysisPermutation.o obj/analysisPermutationInteraction.o obj/analysisPermutationPerGroup.o obj/analysisPermutationSequence.o obj/commands.o obj/df.o obj/fastQTL.o obj/management.o obj/mle.o obj/readCovariates.o obj/readGenotypes.o obj/readGroups.o obj/readInclusionsExclusions.o obj/readInteractions.o obj/readPhenotypes.o obj/readThresholds.o obj/residualizer.o obj/tabix.o obj/utils.o -lRmath -lhts -lm -lz -lboost_iostreams -lboost_program_options -lgsl -lblas -o bin/fastQTL make[2]: Leaving directory '/build/fastqtl-K7pd7K/fastqtl-2.184+dfsg' cd /build/fastqtl-K7pd7K/fastqtl-2.184+dfsg/example/ && \ tar Jcvf examples.tar.xz * --sort=name --mode=go=rX,u+rw,a-s --owner=root --group=root --numeric-owner covariates.txt.gz genotypes.vcf.gz genotypes.vcf.gz.tbi interaction.txt phenotypes.bed.gz phenotypes.bed.gz.tbi make[1]: Leaving directory '/build/fastqtl-K7pd7K/fastqtl-2.184+dfsg' dh: command-omitted: The call to "dh_auto_test -i" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -i dh_auto_install -i dh_install -i dh_installdocs -i dh_installchangelogs -i dh_installman -i dh_lintian -i dh_perl -i dh_link -i dh_strip_nondeterminism -i dh_compress -i dh_fixperms -i dh_missing -i dh_installdeb -i dh_gencontrol -i dh_md5sums -i dh_builddeb -i dpkg-deb: building package 'fastqtl-doc' in '../fastqtl-doc_2.184+dfsg-8_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../fastqtl_2.184+dfsg-8_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/fastqtl-K7pd7K /tmp/fastqtl-2.184+dfsg-8srep9m4g I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.eFFld7Z7b0... I: success in 529.1956 seconds md5: fastqtl-doc_2.184+dfsg-8_all.deb: OK sha1: fastqtl-doc_2.184+dfsg-8_all.deb: OK sha256: fastqtl-doc_2.184+dfsg-8_all.deb: OK Checksums: OK