Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/f/fastqtl/fastqtl_2.184+dfsg-7_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/fastqtl-2.184+dfsg-7kfi9lu0u/fastqtl_2.184+dfsg-7_all.buildinfo Get source package info: fastqtl=2.184+dfsg-7 Source URL: http://snapshot.notset.fr/mr/package/fastqtl/2.184+dfsg-7/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-11 automake=1:1.16.1-4 autopoint=0.19.8.1-9 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.46 bash=5.0-4 binutils=2.32.51.20190909-1 binutils-common=2.32.51.20190909-1 binutils-x86-64-linux-gnu=2.32.51.20190909-1 bsdmainutils=11.1.2+b1 bsdutils=1:2.34-0.1 build-essential=12.7 bzip2=1.0.8-2 coreutils=8.30-3+b1 cpp=4:9.2.1-3 cpp-9=9.2.1-8 dash=0.5.10.2-6 debconf=1.5.73 debhelper=12.5.4 debianutils=4.9 dh-autoreconf=19 dh-strip-nondeterminism=1.6.0-1 diffutils=1:3.7-3 dpkg=1.19.7 dpkg-dev=1.19.7 dwz=0.13-1 fdisk=2.34-0.1 file=1:5.37-5 findutils=4.7.0-1 g++=4:9.2.1-3 g++-9=9.2.1-8 gcc=4:9.2.1-3 gcc-9=9.2.1-8 gcc-9-base=9.2.1-8 gettext=0.19.8.1-9 gettext-base=0.19.8.1-9 grep=3.3-1 groff-base=1.22.4-3 gzip=1.9-3+b1 hostname=3.22+b1 icu-devtools=63.2-2 init-system-helpers=1.57 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-4 libarchive-zip-perl=1.65-1 libasan5=9.2.1-8 libatomic1=9.2.1-8 libattr1=1:2.4.48-4 libaudit-common=1:2.8.5-2 libaudit1=1:2.8.5-2 libbinutils=2.32.51.20190909-1 libblas-dev=3.8.0-2 libblas3=3.8.0-2 libblkid1=2.34-0.1 libboost-dev=1.67.0.2 libboost-iostreams-dev=1.67.0.2 libboost-iostreams1.67-dev=1.67.0-13 libboost-iostreams1.67.0=1.67.0-13 libboost-program-options-dev=1.67.0.2 libboost-program-options1.67-dev=1.67.0-13 libboost-program-options1.67.0=1.67.0-13 libboost-regex1.67-dev=1.67.0-13 libboost-regex1.67.0=1.67.0-13 libboost1.67-dev=1.67.0-13 libbsd0=0.10.0-1 libbz2-1.0=1.0.8-2 libc-bin=2.29-1 libc-dev-bin=2.29-1 libc6=2.29-1 libc6-dev=2.29-1 libcap-ng0=0.7.9-2+b1 libcc1-0=9.2.1-8 libcom-err2=1.45.3-4 libcroco3=0.6.13-1 libcurl3-gnutls=7.65.3-1 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.249 libdeflate0=1.3-1 libdpkg-perl=1.19.7 libeigen3-dev=3.3.7-1 libelf1=0.176-1.1 libfdisk1=2.34-0.1 libffi6=3.2.1-9 libfile-stripnondeterminism-perl=1.6.0-1 libgcc-9-dev=9.2.1-8 libgcc1=1:9.2.1-8 libgcrypt20=1.8.5-2 libgdbm-compat4=1.18.1-5 libgdbm6=1.18.1-5 libgfortran5=9.2.1-8 libglib2.0-0=2.60.6-2 libgmp10=2:6.1.2+dfsg-4 libgnutls30=3.6.9-4 libgomp1=9.2.1-8 libgpg-error0=1.36-7 libgsl-dev=2.5+dfsg-6+b1 libgsl23=2.5+dfsg-6+b1 libgslcblas0=2.5+dfsg-6+b1 libgssapi-krb5-2=1.17-6 libhogweed4=3.5.1+really3.4.1-1 libhts-dev=1.9-11 libhts2=1.9-11 libicu-dev=63.2-2 libicu63=63.2-2 libidn2-0=2.2.0-1 libisl21=0.21-2 libitm1=9.2.1-8 libk5crypto3=1.17-6 libkeyutils1=1.6-6 libkrb5-3=1.17-6 libkrb5support0=1.17-6 libldap-2.4-2=2.4.48+dfsg-1 libldap-common=2.4.48+dfsg-1 liblsan0=9.2.1-8 liblz4-1=1.8.3-1+b1 liblzma-dev=5.2.4-1+b1 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.37-5 libmagic1=1:5.37-5 libmount1=2.34-0.1 libmpc3=1.1.0-1 libmpfr6=4.0.2-1 libncurses6=6.1+20190803-1 libncursesw6=6.1+20190803-1 libnettle6=3.5.1+really3.4.1-1 libnghttp2-14=1.39.2-1 libp11-kit0=0.23.16.1-2 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpcre2-8-0=10.32-5+b1 libpcre3=2:8.39-12+b1 libperl5.28=5.28.1-6 libpipeline1=1.5.1-2 libpsl5=0.20.2-2 libquadmath0=9.2.1-8 librtmp1=2.4+20151223.gitfa8646d.1-2 libsasl2-2=2.1.27+dfsg-1 libsasl2-modules-db=2.1.27+dfsg-1 libseccomp2=2.4.1-2 libselinux1=2.9-2+b2 libsigsegv2=2.12-2 libsmartcols1=2.34-0.1 libssh2-1=1.8.0-2.1 libssl1.1=1.1.1c-1 libstdc++-9-dev=9.2.1-8 libstdc++6=9.2.1-8 libsub-override-perl=0.09-2 libsystemd0=242-7 libtasn1-6=4.14-2 libtinfo6=6.1+20190803-1 libtool=2.4.6-11 libtsan0=9.2.1-8 libubsan1=9.2.1-8 libuchardet0=0.0.6-3 libudev1=242-7 libunistring2=0.9.10-2 libuuid1=2.34-0.1 libxml2=2.9.4+dfsg1-7+b3 linux-libc-dev=5.2.9-2 login=1:4.7-2 lsb-base=11.1.0 m4=1.4.18-2 make=4.2.1-1.2 man-db=2.8.7-3 mawk=1.3.3-17+b3 ncurses-base=6.1+20190803-1 ncurses-bin=6.1+20190803-1 patch=2.7.6-6 perl=5.28.1-6 perl-base=5.28.1-6 perl-modules-5.28=5.28.1-6 pkg-config=0.29-6 po-debconf=1.0.21 r-mathlib=3.6.1-4 sed=4.7-1 sensible-utils=0.0.12 sysvinit-utils=2.96~beta-1 tar=1.30+dfsg-6+b1 util-linux=2.34-0.1 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-1+b1 zlib1g-dev=1:1.2.11.dfsg-1+b1 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20191009T085308Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20190909T151002Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d fastqtl=2.184+dfsg-7 && mkdir -p /build/fastqtl-gudHqC && dpkg-source --no-check -x /*.dsc /build/fastqtl-gudHqC/fastqtl-2.184+dfsg && chown -R builduser:builduser /build/fastqtl-gudHqC" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/fastqtl-gudHqC/fastqtl-2.184+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1568030897" dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/fastqtl-gudHqC /tmp/fastqtl-2.184+dfsg-7kfi9lu0u bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20190909T151002Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.p2XOUttuRa as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.p2XOUttuRa Reading package lists... Building dependency tree... util-linux is already the newest version (2.34-0.1). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 132 kB of archives. After this operation, 393 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20190909T151002Z unstable/main amd64 libfakeroot amd64 1.24-1 [45.7 kB] Get:2 http://snapshot.notset.fr/archive/debian/20190909T151002Z unstable/main amd64 fakeroot amd64 1.24-1 [85.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 132 kB in 0s (810 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4474 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.24-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.24-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.24-1_amd64.deb ... Unpacking fakeroot (1.24-1) ... Setting up libfakeroot:amd64 (1.24-1) ... Setting up fakeroot (1.24-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.29-1) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20191009T085308Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20190909T151002Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.p2XOUttuRa Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:2 http://snapshot.notset.fr/archive/debian/20191009T085308Z unstable InRelease [139 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20190909T151002Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20191009T085308Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20191009T085308Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20191009T085308Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20191009T085308Z unstable/main amd64 Packages [11.0 MB] Fetched 33.7 MB in 30s (1131 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.p2XOUttuRa I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d fastqtl=2.184+dfsg-7 && mkdir -p /build/fastqtl-gudHqC && dpkg-source --no-check -x /*.dsc /build/fastqtl-gudHqC/fastqtl-2.184+dfsg && chown -R builduser:builduser /build/fastqtl-gudHqC"' exec /tmp/mmdebstrap.p2XOUttuRa Reading package lists... NOTICE: 'fastqtl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/fastqtl.git Please use: git clone https://salsa.debian.org/med-team/fastqtl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 17.1 MB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main fastqtl 2.184+dfsg-7 (dsc) [2191 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main fastqtl 2.184+dfsg-7 (tar) [17.1 MB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main fastqtl 2.184+dfsg-7 (diff) [19.5 kB] Fetched 17.1 MB in 15s (1173 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'fastqtl_2.184+dfsg-7.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting fastqtl in /build/fastqtl-gudHqC/fastqtl-2.184+dfsg dpkg-source: info: unpacking fastqtl_2.184+dfsg.orig.tar.xz dpkg-source: info: unpacking fastqtl_2.184+dfsg-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_Makefile_dynamic_hardenings.patch dpkg-source: info: applying 02_Replace_libtabix_by_libhts.patch dpkg-source: info: applying 03_Reproducible_builds.patch dpkg-source: info: applying cross.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/fastqtl-gudHqC/fastqtl-2.184+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1568030897" dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.p2XOUttuRa dpkg-buildpackage: info: source package fastqtl dpkg-buildpackage: info: source version 2.184+dfsg-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . fakeroot debian/rules clean dh clean dh_auto_clean make -j4 clean make[1]: Entering directory '/build/fastqtl-gudHqC/fastqtl-2.184+dfsg' rm -f obj/*.o bin/fastQTL make[1]: Leaving directory '/build/fastqtl-gudHqC/fastqtl-2.184+dfsg' dh_clean debian/rules build-indep dh build-indep dh_update_autotools_config -i dh_autoreconf -i dh_auto_configure -i debian/rules override_dh_auto_build make[1]: Entering directory '/build/fastqtl-gudHqC/fastqtl-2.184+dfsg' mkdir -p /build/fastqtl-gudHqC/fastqtl-2.184+dfsg/obj/ mkdir -p /build/fastqtl-gudHqC/fastqtl-2.184+dfsg/bin/ dh_auto_build -- CXXFLAGS='-g -fdebug-prefix-map=/build/fastqtl-gudHqC/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security' make -j4 "INSTALL=install --strip-program=true" "CXXFLAGS=-g -fdebug-prefix-map=/build/fastqtl-gudHqC/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security" make[2]: Entering directory '/build/fastqtl-gudHqC/fastqtl-2.184+dfsg' g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build/fastqtl-gudHqC/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisMapping.o -c src/analysisMapping.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build/fastqtl-gudHqC/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisNominal.o -c src/analysisNominal.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build/fastqtl-gudHqC/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutation.o -c src/analysisPermutation.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build/fastqtl-gudHqC/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutationInteraction.o -c src/analysisPermutationInteraction.cpp -Isrc In file included from src/analysisMapping.cpp:17: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:170:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 170 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:2: note: here 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:171:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:2: note: here 172 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ In file included from src/analysisPermutationInteraction.cpp:17: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:170:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 170 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:2: note: here 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:171:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:2: note: here 172 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ In file included from src/analysisPermutation.cpp:17: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:170:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 170 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:2: note: here 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:171:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:2: note: here 172 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ In file included from src/analysisNominal.cpp:17: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:170:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 170 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:2: note: here 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:171:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:2: note: here 172 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build/fastqtl-gudHqC/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutationPerGroup.o -c src/analysisPermutationPerGroup.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build/fastqtl-gudHqC/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutationSequence.o -c src/analysisPermutationSequence.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build/fastqtl-gudHqC/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/commands.o -c src/commands.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build/fastqtl-gudHqC/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/df.o -c src/df.cpp -Isrc In file included from src/analysisPermutationSequence.cpp:17: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:170:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 170 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:2: note: here 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:171:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:2: note: here 172 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build/fastqtl-gudHqC/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/fastQTL.o -c src/fastQTL.cpp -Isrc In file included from src/analysisPermutationPerGroup.cpp:17: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:170:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 170 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:2: note: here 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:171:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:2: note: here 172 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build/fastqtl-gudHqC/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/management.o -c src/management.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build/fastqtl-gudHqC/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/mle.o -c src/mle.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build/fastqtl-gudHqC/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readCovariates.o -c src/readCovariates.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build/fastqtl-gudHqC/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readGenotypes.o -c src/readGenotypes.cpp -Isrc In file included from src/management.cpp:20: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:170:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 170 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:2: note: here 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:171:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:2: note: here 172 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build/fastqtl-gudHqC/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readGroups.o -c src/readGroups.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build/fastqtl-gudHqC/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readInclusionsExclusions.o -c src/readInclusionsExclusions.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build/fastqtl-gudHqC/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readInteractions.o -c src/readInteractions.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build/fastqtl-gudHqC/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readPhenotypes.o -c src/readPhenotypes.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build/fastqtl-gudHqC/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readThresholds.o -c src/readThresholds.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build/fastqtl-gudHqC/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/residualizer.o -c src/residualizer.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build/fastqtl-gudHqC/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/tabix.o -c src/utils/tabix.cpp -Isrc src/utils/tabix.cpp: In constructor ‘Tabix::Tabix(std::string&)’: src/utils/tabix.cpp:17:32: warning: ‘int bgzf_is_bgzf(const char*)’ is deprecated: Use bgzf_compression() or hts_detect_format() instead [-Wdeprecated-declarations] 17 | if ( bgzf_is_bgzf(cfilename)!=1 ) | ^ In file included from src/utils/tabix.hpp:12, from src/utils/tabix.cpp:6: /usr/include/htslib/bgzf.h:243:9: note: declared here 243 | int bgzf_is_bgzf(const char *fn) HTS_DEPRECATED("Use bgzf_compression() or hts_detect_format() instead"); | ^~~~~~~~~~~~ src/utils/tabix.cpp:17:32: warning: ‘int bgzf_is_bgzf(const char*)’ is deprecated: Use bgzf_compression() or hts_detect_format() instead [-Wdeprecated-declarations] 17 | if ( bgzf_is_bgzf(cfilename)!=1 ) | ^ In file included from src/utils/tabix.hpp:12, from src/utils/tabix.cpp:6: /usr/include/htslib/bgzf.h:243:9: note: declared here 243 | int bgzf_is_bgzf(const char *fn) HTS_DEPRECATED("Use bgzf_compression() or hts_detect_format() instead"); | ^~~~~~~~~~~~ g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build/fastqtl-gudHqC/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/utils.o -c src/utils/utils.cpp -Isrc g++ -O3 -Wl,-z,relro -Wl,-z,now obj/analysisMapping.o obj/analysisNominal.o obj/analysisPermutation.o obj/analysisPermutationInteraction.o obj/analysisPermutationPerGroup.o obj/analysisPermutationSequence.o obj/commands.o obj/df.o obj/fastQTL.o obj/management.o obj/mle.o obj/readCovariates.o obj/readGenotypes.o obj/readGroups.o obj/readInclusionsExclusions.o obj/readInteractions.o obj/readPhenotypes.o obj/readThresholds.o obj/residualizer.o obj/tabix.o obj/utils.o -lRmath -lhts -lm -lz -lboost_iostreams -lboost_program_options -lgsl -lblas -o bin/fastQTL make[2]: Leaving directory '/build/fastqtl-gudHqC/fastqtl-2.184+dfsg' cd /build/fastqtl-gudHqC/fastqtl-2.184+dfsg/example/ && \ tar Jcvf examples.tar.xz * --sort=name --mode=go=rX,u+rw,a-s --owner=root --group=root --numeric-owner covariates.txt.gz genotypes.vcf.gz genotypes.vcf.gz.tbi interaction.txt phenotypes.bed.gz phenotypes.bed.gz.tbi make[1]: Leaving directory '/build/fastqtl-gudHqC/fastqtl-2.184+dfsg' dh_auto_test -i create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-indep dh binary-indep dh_testroot -i dh_prep -i dh_auto_install -i dh_install -i dh_installdocs -i dh_installchangelogs -i dh_installman -i dh_lintian -i dh_perl -i dh_link -i dh_strip_nondeterminism -i dh_compress -i dh_fixperms -i dh_missing -i dh_installdeb -i dh_gencontrol -i dh_md5sums -i dh_builddeb -i dpkg-deb: building package 'fastqtl-doc' in '../fastqtl-doc_2.184+dfsg-7_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../fastqtl_2.184+dfsg-7_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/fastqtl-gudHqC /tmp/fastqtl-2.184+dfsg-7kfi9lu0u I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.p2XOUttuRa... I: success in 820.8607 seconds md5: fastqtl-doc_2.184+dfsg-7_all.deb: OK sha1: fastqtl-doc_2.184+dfsg-7_all.deb: OK sha256: fastqtl-doc_2.184+dfsg-7_all.deb: OK Checksums: OK