Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/f/fastaq/fastaq_3.17.0-3_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/fastaq-3.17.0-332zymv_1/fastaq_3.17.0-3_all.buildinfo Get source package info: fastaq=3.17.0-3 Source URL: http://snapshot.notset.fr/mr/package/fastaq/3.17.0-3/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-11.1 automake=1:1.16.2-1 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.47 bash=5.0-6 binutils=2.34-6 binutils-common=2.34-6 binutils-x86-64-linux-gnu=2.34-6 bsdmainutils=11.1.2+b1 bsdutils=1:2.34-0.1 build-essential=12.8 bzip2=1.0.8-2 coreutils=8.30-3+b1 cpp=4:9.2.1-3.1 cpp-9=9.3.0-10 dash=0.5.10.2-7 debconf=1.5.73 debhelper=13 debianutils=4.9.1 dh-autoreconf=19 dh-python=4.20200315 dh-strip-nondeterminism=1.7.0-1 diffutils=1:3.7-3 dpkg=1.19.7 dpkg-dev=1.19.7 dwz=0.13-5 fdisk=2.34-0.1 file=1:5.38-4 findutils=4.7.0-1 g++=4:9.2.1-3.1 g++-9=9.3.0-10 gcc=4:9.2.1-3.1 gcc-10-base=10-20200411-1 gcc-9=9.3.0-10 gcc-9-base=9.3.0-10 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 grep=3.4-1 groff-base=1.22.4-4 gzip=1.10-2 help2man=1.47.13 hostname=3.23 init-system-helpers=1.57 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-6 libarchive-zip-perl=1.68-1 libasan5=9.3.0-10 libatomic1=10-20200411-1 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-3 libaudit1=1:2.8.5-3+b1 libbinutils=2.34-6 libblkid1=2.34-0.1 libbrotli1=1.0.7-6+b1 libbsd0=0.10.0-1 libbz2-1.0=1.0.8-2 libc-bin=2.30-4 libc-dev-bin=2.30-4 libc6=2.30-4 libc6-dev=2.30-4 libcap-ng0=0.7.9-2.1+b2 libcc1-0=10-20200411-1 libcom-err2=1.45.6-1 libcroco3=0.6.13-1 libcrypt-dev=1:4.4.16-1 libcrypt1=1:4.4.16-1 libctf-nobfd0=2.34-6 libctf0=2.34-6 libcurl3-gnutls=7.68.0-1 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.251 libdebhelper-perl=13 libdeflate0=1.5-3 libdpkg-perl=1.19.7 libelf1=0.176-1.1 libexpat1=2.2.9-1 libfdisk1=2.34-0.1 libffi7=3.3-4 libfile-stripnondeterminism-perl=1.7.0-1 libgcc-9-dev=9.3.0-10 libgcc-s1=10-20200411-1 libgcrypt20=1.8.5-5 libgdbm-compat4=1.18.1-5 libgdbm6=1.18.1-5 libglib2.0-0=2.64.2-1 libgmp10=2:6.2.0+dfsg-4 libgnutls30=3.6.13-2 libgomp1=10-20200411-1 libgpg-error0=1.37-1 libgssapi-krb5-2=1.17-7 libhogweed5=3.5.1+really3.5.1-2 libhts3=1.10.2-3 libicu63=63.2-3 libidn2-0=2.3.0-1 libisl22=0.22.1-1 libitm1=10-20200411-1 libk5crypto3=1.17-7 libkeyutils1=1.6.1-2 libkrb5-3=1.17-7 libkrb5support0=1.17-7 libldap-2.4-2=2.4.49+dfsg-4 libldap-common=2.4.49+dfsg-4 liblocale-gettext-perl=1.07-4 liblsan0=10-20200411-1 liblz4-1=1.9.2-2 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.38-4 libmagic1=1:5.38-4 libmount1=2.34-0.1 libmpc3=1.1.0-1 libmpdec2=2.4.2-3 libmpfr6=4.0.2-1 libncurses6=6.2-1 libncursesw6=6.2-1 libnettle7=3.5.1+really3.5.1-2 libnghttp2-14=1.40.0-1 libp11-kit0=0.23.20-1 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpcre2-8-0=10.34-7 libpcre3=2:8.39-12+b1 libperl5.30=5.30.0-9 libpipeline1=1.5.2-2 libpsl5=0.21.0-1 libpython3-stdlib=3.8.2-3 libpython3.8-minimal=3.8.2-1+b1 libpython3.8-stdlib=3.8.2-1+b1 libquadmath0=10-20200411-1 libreadline8=8.0-4 librtmp1=2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2=2.1.27+dfsg-2 libsasl2-modules-db=2.1.27+dfsg-2 libseccomp2=2.4.3-1+b1 libselinux1=3.0-1+b3 libsigsegv2=2.12-2 libsmartcols1=2.34-0.1 libsqlite3-0=3.31.1-5 libssh2-1=1.8.0-2.1 libssl1.1=1.1.1f-1 libstdc++-9-dev=9.3.0-10 libstdc++6=10-20200411-1 libsub-override-perl=0.09-2 libsystemd0=245.4-4 libtasn1-6=4.16.0-2 libtinfo6=6.2-1 libtool=2.4.6-14 libtsan0=10-20200411-1 libubsan1=10-20200411-1 libuchardet0=0.0.6-3 libudev1=245.4-4 libunistring2=0.9.10-2 libuuid1=2.34-0.1 libxml2=2.9.10+dfsg-5 linux-libc-dev=5.5.13-2 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 make=4.2.1-1.2 man-db=2.9.1-1 mawk=1.3.4.20200120-2 mime-support=3.64 ncurses-base=6.2-1 ncurses-bin=6.2-1 patch=2.7.6-6 perl=5.30.0-9 perl-base=5.30.0-9 perl-modules-5.30=5.30.0-9 po-debconf=1.0.21 python3=3.8.2-3 python3-distutils=3.8.2-2 python3-lib2to3=3.8.2-2 python3-minimal=3.8.2-3 python3-nose=1.3.7-5 python3-pkg-resources=44.0.0-1 python3-setuptools=44.0.0-1 python3.8=3.8.2-1+b1 python3.8-minimal=3.8.2-1+b1 readline-common=8.0-4 samtools=1.10-3 sed=4.7-1 sensible-utils=0.0.12+nmu1 sysvinit-utils=2.96-3 tar=1.30+dfsg-7 util-linux=2.34-0.1 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20200417T040322Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d fastaq=3.17.0-3 && mkdir -p /build/fastaq-frGK3M && dpkg-source --no-check -x /*.dsc /build/fastaq-frGK3M/fastaq-3.17.0 && chown -R builduser:builduser /build/fastaq-frGK3M" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/fastaq-frGK3M/fastaq-3.17.0 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1587117591" dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/fastaq-frGK3M /tmp/fastaq-3.17.0-332zymv_1 bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20200417T040322Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.2r31ANdbJ4 as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.2r31ANdbJ4 Reading package lists... Building dependency tree... util-linux is already the newest version (2.34-0.1). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 132 kB of archives. After this operation, 393 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20200417T040322Z unstable/main amd64 libfakeroot amd64 1.24-1 [45.7 kB] Get:2 http://snapshot.notset.fr/archive/debian/20200417T040322Z unstable/main amd64 fakeroot amd64 1.24-1 [85.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 132 kB in 0s (1054 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4504 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.24-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.24-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.24-1_amd64.deb ... Unpacking fakeroot (1.24-1) ... Setting up libfakeroot:amd64 (1.24-1) ... Setting up fakeroot (1.24-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.30-4) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20200417T040322Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.2r31ANdbJ4 Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20200417T040322Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 19s (1168 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.2r31ANdbJ4 I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d fastaq=3.17.0-3 && mkdir -p /build/fastaq-frGK3M && dpkg-source --no-check -x /*.dsc /build/fastaq-frGK3M/fastaq-3.17.0 && chown -R builduser:builduser /build/fastaq-frGK3M"' exec /tmp/mmdebstrap.2r31ANdbJ4 Reading package lists... NOTICE: 'fastaq' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/fastaq.git Please use: git clone https://salsa.debian.org/med-team/fastaq.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 77.6 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main fastaq 3.17.0-3 (dsc) [2133 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main fastaq 3.17.0-3 (tar) [71.3 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main fastaq 3.17.0-3 (diff) [4148 B] Fetched 77.6 kB in 0s (526 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'fastaq_3.17.0-3.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting fastaq in /build/fastaq-frGK3M/fastaq-3.17.0 dpkg-source: info: unpacking fastaq_3.17.0.orig.tar.gz dpkg-source: info: unpacking fastaq_3.17.0-3.debian.tar.xz I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/fastaq-frGK3M/fastaq-3.17.0 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1587117591" dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.2r31ANdbJ4 dpkg-buildpackage: info: source package fastaq dpkg-buildpackage: info: source version 3.17.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Sascha Steinbiss dpkg-source --before-build . fakeroot debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/fastaq-frGK3M/fastaq-3.17.0' rm -rf build .pybuild doc pyfastaq.egg-info find . -name __pycache__ | xargs rm -rf rm -rf /build/fastaq-frGK3M/fastaq-3.17.0/debian/man make[1]: Leaving directory '/build/fastaq-frGK3M/fastaq-3.17.0' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/fastaq.substvars debian/files rm -fr -- debian/fastaq/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build-indep dh build-indep --with python3 --buildsystem=pybuild dh_update_autotools_config -i -O--buildsystem=pybuild dh_autoreconf -i -O--buildsystem=pybuild dh_auto_configure -i -O--buildsystem=pybuild pybuild --configure --test-nose -i python{version} -p 3.8 I: pybuild base:217: python3.8 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/fastaq-frGK3M/fastaq-3.17.0' dh_python3 D: dh_python3 dh_python3:161: version: 4.20200315 D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3'] D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': None, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': None} D: dh_python3 dh_python3:164: args: [] D: dh_python3 dh_python3:165: supported Python versions: 3.8 (default=3.8) D: dh_python3 debhelper:152: source=fastaq, binary packages=['fastaq'] D: dh_python3 dh_python3:183: processing package fastaq... D: dh_python3 fs:260: package fastaq details = {'requires.txt': set(), 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': set(), 'private_dirs': {}, 'compile': False, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package fastaq D: dh_python3 depends:275: D=set(); R=[]; S=[]; E=[], B=[]; RT=[] dh_auto_build pybuild --build --test-nose -i python{version} -p 3.8 I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_py creating /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq copying pyfastaq/caf.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq copying pyfastaq/__init__.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq copying pyfastaq/sequences.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq copying pyfastaq/genetic_codes.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq copying pyfastaq/intervals.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq copying pyfastaq/tasks.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq copying pyfastaq/utils.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq creating /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/trim_ends.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/scaffolds_to_contigs.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_fasta.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/count_sequences.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_mira_xml.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/sort_by_name.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/enumerate_names.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/fasta_to_fastq.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/__init__.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/expand_nucleotides.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/filter.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/get_ids.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/merge.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/capillary_to_pairs.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_orfs_gff.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/add_indels.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/caf_to_fastq.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/split_by_base_count.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/trim_Ns_at_end.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/reverse_complement.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_boulderio.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/sequence_trim.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/sort_by_size.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_random_subset.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/trim_contigs.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/interleave.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/acgtn_only.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/get_seq_flanking_gaps.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/deinterleave.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/chunker.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/make_random_contigs.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_tiling_bam.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/replace_bases.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/version.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/strip_illumina_suffix.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_unique_by_id.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/search_for_seq.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/translate.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_perfect_reads.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_fake_qual.py -> /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners running build_scripts creating build creating build/scripts-3.8 copying and adjusting scripts/fastaq -> build/scripts-3.8 changing mode of build/scripts-3.8/fastaq from 644 to 755 mkdir /build/fastaq-frGK3M/fastaq-3.17.0/doc cd /build/fastaq-frGK3M/fastaq-3.17.0/doc make[1]: Leaving directory '/build/fastaq-frGK3M/fastaq-3.17.0' dh_auto_test -i -O--buildsystem=pybuild pybuild --test --test-nose -i python{version} -p 3.8 I: pybuild base:217: cd /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build; python3.8 -m nose -v ---------------------------------------------------------------------- Ran 0 tests in 0.054s OK create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-indep dh binary-indep --with python3 --buildsystem=pybuild dh_testroot -i -O--buildsystem=pybuild dh_prep -i -O--buildsystem=pybuild rm -f -- debian/fastaq.substvars rm -fr -- debian/.debhelper/generated/fastaq/ debian/fastaq/ debian/tmp/ dh_auto_install -i -O--buildsystem=pybuild install -d /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq pybuild --install --test-nose -i python{version} -p 3.8 --dest-dir /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq I: pybuild base:217: /usr/bin/python3 setup.py install --root /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq running install running build running build_py running build_scripts running install_lib creating /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr creating /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib creating /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8 creating /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages creating /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/caf.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/__init__.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/sequences.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/genetic_codes.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/intervals.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/tasks.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/utils.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq creating /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/__pycache__ copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/__pycache__/sequences.cpython-38.pyc -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/__pycache__ copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/__pycache__/caf.cpython-38.pyc -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/__pycache__ copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/__pycache__/__init__.cpython-38.pyc -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/__pycache__ copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/__pycache__/tasks.cpython-38.pyc -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/__pycache__ copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/__pycache__/intervals.cpython-38.pyc -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/__pycache__ copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/__pycache__/utils.cpython-38.pyc -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/__pycache__ copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/__pycache__/genetic_codes.cpython-38.pyc -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/__pycache__ creating /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/trim_ends.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/scaffolds_to_contigs.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/to_fasta.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/count_sequences.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/to_mira_xml.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/sort_by_name.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/enumerate_names.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/fasta_to_fastq.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/__init__.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/expand_nucleotides.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/filter.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/get_ids.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/merge.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/capillary_to_pairs.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/to_orfs_gff.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/add_indels.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/caf_to_fastq.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/split_by_base_count.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/trim_Ns_at_end.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/reverse_complement.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/to_boulderio.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/sequence_trim.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/sort_by_size.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/to_random_subset.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/trim_contigs.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/interleave.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/acgtn_only.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/get_seq_flanking_gaps.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/deinterleave.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/chunker.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/make_random_contigs.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/to_tiling_bam.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/replace_bases.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners creating /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/__pycache__ copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/__pycache__/__init__.cpython-38.pyc -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/__pycache__ copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/version.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/strip_illumina_suffix.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/to_unique_by_id.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/search_for_seq.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/translate.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/to_perfect_reads.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners copying /build/fastaq-frGK3M/fastaq-3.17.0/.pybuild/cpython3_3.8_fastaq/build/pyfastaq/runners/to_fake_qual.py -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/caf.py to caf.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/__init__.py to __init__.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/sequences.py to sequences.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/genetic_codes.py to genetic_codes.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/intervals.py to intervals.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/tasks.py to tasks.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/utils.py to utils.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/trim_ends.py to trim_ends.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/scaffolds_to_contigs.py to scaffolds_to_contigs.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/to_fasta.py to to_fasta.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/count_sequences.py to count_sequences.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/to_mira_xml.py to to_mira_xml.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/sort_by_name.py to sort_by_name.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/enumerate_names.py to enumerate_names.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/fasta_to_fastq.py to fasta_to_fastq.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/__init__.py to __init__.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/expand_nucleotides.py to expand_nucleotides.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/filter.py to filter.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/get_ids.py to get_ids.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/merge.py to merge.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/capillary_to_pairs.py to capillary_to_pairs.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/to_orfs_gff.py to to_orfs_gff.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/add_indels.py to add_indels.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/caf_to_fastq.py to caf_to_fastq.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/split_by_base_count.py to split_by_base_count.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/trim_Ns_at_end.py to trim_Ns_at_end.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/reverse_complement.py to reverse_complement.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/to_boulderio.py to to_boulderio.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/sequence_trim.py to sequence_trim.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/sort_by_size.py to sort_by_size.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/to_random_subset.py to to_random_subset.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/trim_contigs.py to trim_contigs.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/interleave.py to interleave.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/acgtn_only.py to acgtn_only.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/get_seq_flanking_gaps.py to get_seq_flanking_gaps.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/deinterleave.py to deinterleave.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/chunker.py to chunker.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/make_random_contigs.py to make_random_contigs.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/to_tiling_bam.py to to_tiling_bam.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/replace_bases.py to replace_bases.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/version.py to version.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/strip_illumina_suffix.py to strip_illumina_suffix.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/to_unique_by_id.py to to_unique_by_id.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/search_for_seq.py to search_for_seq.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/translate.py to translate.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/to_perfect_reads.py to to_perfect_reads.cpython-38.pyc byte-compiling /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq/runners/to_fake_qual.py to to_fake_qual.cpython-38.pyc running install_egg_info running egg_info creating pyfastaq.egg-info writing pyfastaq.egg-info/PKG-INFO writing dependency_links to pyfastaq.egg-info/dependency_links.txt writing top-level names to pyfastaq.egg-info/top_level.txt writing manifest file 'pyfastaq.egg-info/SOURCES.txt' reading manifest file 'pyfastaq.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pyfastaq.egg-info/SOURCES.txt' Copying pyfastaq.egg-info to /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/lib/python3.8/dist-packages/pyfastaq-3.17.0.egg-info Skipping SOURCES.txt running install_scripts creating /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/bin copying build/scripts-3.8/fastaq -> /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/bin changing mode of /build/fastaq-frGK3M/fastaq-3.17.0/debian/fastaq/usr/bin/fastaq to 755 dh_installdocs -i -O--buildsystem=pybuild install -d debian/fastaq/usr/share/doc/fastaq install -d debian/.debhelper/generated/fastaq install -p -m0644 debian/copyright debian/fastaq/usr/share/doc/fastaq/copyright dh_installchangelogs -i -O--buildsystem=pybuild install -p -m0644 debian/changelog debian/fastaq/usr/share/doc/fastaq/changelog.Debian rm -f debian/fastaq.debhelper.log debian/rules override_dh_installman make[1]: Entering directory '/build/fastaq-frGK3M/fastaq-3.17.0' mkdir -p /build/fastaq-frGK3M/fastaq-3.17.0/debian/man PYTHONPATH=. help2man -N -o debian/man/fastaq.1 \ -n 'FASTA and FASTQ file manipulation tools' \ --no-discard-stderr \ --version-string=`PYTHONPATH=. scripts/fastaq version` scripts/fastaq sed -i 's/.SH DESCRIPTION/.SH DESCRIPTION\\n.nf/' debian/man/fastaq.1 scripts/fastaq 2>&1 | tail -n +13 | debian/make_man dh_installman -- install -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-acgtn_only.1 debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 install -p -m0644 ./debian/man/fastaq-add_indels.1 debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 install -p -m0644 ./debian/man/fastaq-caf_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 install -p -m0644 ./debian/man/fastaq-capillary_to_pairs.1 debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 install -p -m0644 ./debian/man/fastaq-chunker.1 debian/fastaq/usr/share/man/man1/fastaq-chunker.1 install -p -m0644 ./debian/man/fastaq-count_sequences.1 debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 install -p -m0644 ./debian/man/fastaq-deinterleave.1 debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 install -p -m0644 ./debian/man/fastaq-enumerate_names.1 debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 install -p -m0644 ./debian/man/fastaq-expand_nucleotides.1 debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 install -p -m0644 ./debian/man/fastaq-fasta_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 install -p -m0644 ./debian/man/fastaq-filter.1 debian/fastaq/usr/share/man/man1/fastaq-filter.1 install -p -m0644 ./debian/man/fastaq-get_ids.1 debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 install -p -m0644 ./debian/man/fastaq-get_seq_flanking_gaps.1 debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 install -p -m0644 ./debian/man/fastaq-interleave.1 debian/fastaq/usr/share/man/man1/fastaq-interleave.1 install -p -m0644 ./debian/man/fastaq-make_random_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 install -p -m0644 ./debian/man/fastaq-merge.1 debian/fastaq/usr/share/man/man1/fastaq-merge.1 install -p -m0644 ./debian/man/fastaq-replace_bases.1 debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 install -p -m0644 ./debian/man/fastaq-reverse_complement.1 debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 install -p -m0644 ./debian/man/fastaq-scaffolds_to_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 install -p -m0644 ./debian/man/fastaq-search_for_seq.1 debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 install -p -m0644 ./debian/man/fastaq-sequence_trim.1 debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 install -p -m0644 ./debian/man/fastaq-sort_by_name.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 install -p -m0644 ./debian/man/fastaq-sort_by_size.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 install -p -m0644 ./debian/man/fastaq-split_by_base_count.1 debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 install -p -m0644 ./debian/man/fastaq-strip_illumina_suffix.1 debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 install -p -m0644 ./debian/man/fastaq-to_boulderio.1 debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 install -p -m0644 ./debian/man/fastaq-to_fake_qual.1 debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 install -p -m0644 ./debian/man/fastaq-to_fasta.1 debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 install -p -m0644 ./debian/man/fastaq-to_mira_xml.1 debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 install -p -m0644 ./debian/man/fastaq-to_orfs_gff.1 debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 install -p -m0644 ./debian/man/fastaq-to_perfect_reads.1 debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 install -p -m0644 ./debian/man/fastaq-to_random_subset.1 debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 install -p -m0644 ./debian/man/fastaq-to_tiling_bam.1 debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 install -p -m0644 ./debian/man/fastaq-to_unique_by_id.1 debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 install -p -m0644 ./debian/man/fastaq-translate.1 debian/fastaq/usr/share/man/man1/fastaq-translate.1 install -p -m0644 ./debian/man/fastaq-trim_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 install -p -m0644 ./debian/man/fastaq-trim_ends.1 debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 install -p -m0644 ./debian/man/fastaq-trim_Ns_at_end.1 debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 install -p -m0644 ./debian/man/fastaq-version.1 debian/fastaq/usr/share/man/man1/fastaq-version.1 install -p -m0644 ./debian/man/fastaq.1 debian/fastaq/usr/share/man/man1/fastaq.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 debian/fastaq/usr/share/man/man1/fastaq-chunker.1 debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-filter.1 debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 debian/fastaq/usr/share/man/man1/fastaq-interleave.1 debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-merge.1 debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 debian/fastaq/usr/share/man/man1/fastaq-translate.1 debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 debian/fastaq/usr/share/man/man1/fastaq-version.1 debian/fastaq/usr/share/man/man1/fastaq.1 mv debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 mv debian/fastaq/usr/share/man/man1/fastaq-add_indels.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 mv debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 mv debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 mv debian/fastaq/usr/share/man/man1/fastaq-chunker.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-chunker.1 mv debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 mv debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 mv debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 mv debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 mv debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 debian/fastaq/usr/share/man/man1/fastaq-chunker.1 debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 mv debian/fastaq/usr/share/man/man1/fastaq-translate.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-translate.1 mv debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 mv debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 mv debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 mv debian/fastaq/usr/share/man/man1/fastaq-version.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-version.1 mv debian/fastaq/usr/share/man/man1/fastaq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 debian/fastaq/usr/share/man/man1/fastaq-translate.1 debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 debian/fastaq/usr/share/man/man1/fastaq-version.1 debian/fastaq/usr/share/man/man1/fastaq.1 mv debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 mv debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 mv debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 mv debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 mv debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 mv debian/fastaq/usr/share/man/man1/fastaq-filter.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-filter.1 mv debian/fastaq/usr/share/man/man1/fastaq-get_ids.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 mv debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 mv debian/fastaq/usr/share/man/man1/fastaq-interleave.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-interleave.1 mv debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 mv debian/fastaq/usr/share/man/man1/fastaq-merge.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-merge.1 mv debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 mv debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 mv debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 mv debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-filter.1 debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 debian/fastaq/usr/share/man/man1/fastaq-interleave.1 debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-merge.1 debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 make[1]: Leaving directory '/build/fastaq-frGK3M/fastaq-3.17.0' dh_python3 -i -O--buildsystem=pybuild D: dh_python3 dh_python3:161: version: 4.20200315 D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '-i', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': False, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--buildsystem=pybuild'} D: dh_python3 dh_python3:164: args: [] D: dh_python3 dh_python3:165: supported Python versions: 3.8 (default=3.8) D: dh_python3 debhelper:152: source=fastaq, binary packages=['fastaq'] D: dh_python3 dh_python3:183: processing package fastaq... D: dh_python3 fs:49: moving files from debian/fastaq/usr/lib/python3.8/dist-packages to debian/fastaq/usr/lib/python3/dist-packages/ D: dh_python3 fs:260: package fastaq details = {'requires.txt': set(), 'egg-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package fastaq D: dh_python3 depends:275: D={'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installinit -i -O--buildsystem=pybuild dh_installsystemduser -i -O--buildsystem=pybuild dh_perl -i -O--buildsystem=pybuild dh_link -i -O--buildsystem=pybuild dh_strip_nondeterminism -i -O--buildsystem=pybuild dh_compress -i -O--buildsystem=pybuild cd debian/fastaq chmod a-x usr/share/doc/fastaq/changelog.Debian usr/share/man/man1/fastaq-acgtn_only.1 usr/share/man/man1/fastaq-add_indels.1 usr/share/man/man1/fastaq-caf_to_fastq.1 usr/share/man/man1/fastaq-capillary_to_pairs.1 usr/share/man/man1/fastaq-chunker.1 usr/share/man/man1/fastaq-count_sequences.1 usr/share/man/man1/fastaq-deinterleave.1 usr/share/man/man1/fastaq-enumerate_names.1 usr/share/man/man1/fastaq-expand_nucleotides.1 usr/share/man/man1/fastaq-fasta_to_fastq.1 usr/share/man/man1/fastaq-filter.1 usr/share/man/man1/fastaq-get_ids.1 usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 usr/share/man/man1/fastaq-interleave.1 usr/share/man/man1/fastaq-make_random_contigs.1 usr/share/man/man1/fastaq-merge.1 usr/share/man/man1/fastaq-replace_bases.1 usr/share/man/man1/fastaq-reverse_complement.1 usr/share/man/man1/fastaq-scaffolds_to_contigs.1 usr/share/man/man1/fastaq-search_for_seq.1 usr/share/man/man1/fastaq-sequence_trim.1 usr/share/man/man1/fastaq-sort_by_name.1 usr/share/man/man1/fastaq-sort_by_size.1 usr/share/man/man1/fastaq-split_by_base_count.1 usr/share/man/man1/fastaq-strip_illumina_suffix.1 usr/share/man/man1/fastaq-to_boulderio.1 usr/share/man/man1/fastaq-to_fake_qual.1 usr/share/man/man1/fastaq-to_fasta.1 usr/share/man/man1/fastaq-to_mira_xml.1 usr/share/man/man1/fastaq-to_orfs_gff.1 usr/share/man/man1/fastaq-to_perfect_reads.1 usr/share/man/man1/fastaq-to_random_subset.1 usr/share/man/man1/fastaq-to_tiling_bam.1 usr/share/man/man1/fastaq-to_unique_by_id.1 usr/share/man/man1/fastaq-translate.1 usr/share/man/man1/fastaq-trim_Ns_at_end.1 usr/share/man/man1/fastaq-trim_contigs.1 usr/share/man/man1/fastaq-trim_ends.1 usr/share/man/man1/fastaq-version.1 usr/share/man/man1/fastaq.1 gzip -9nf usr/share/doc/fastaq/changelog.Debian usr/share/man/man1/fastaq-acgtn_only.1 usr/share/man/man1/fastaq-add_indels.1 usr/share/man/man1/fastaq-caf_to_fastq.1 usr/share/man/man1/fastaq-capillary_to_pairs.1 usr/share/man/man1/fastaq-chunker.1 usr/share/man/man1/fastaq-count_sequences.1 usr/share/man/man1/fastaq-deinterleave.1 usr/share/man/man1/fastaq-enumerate_names.1 usr/share/man/man1/fastaq-expand_nucleotides.1 usr/share/man/man1/fastaq-fasta_to_fastq.1 usr/share/man/man1/fastaq-filter.1 usr/share/man/man1/fastaq-get_ids.1 usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 usr/share/man/man1/fastaq-interleave.1 usr/share/man/man1/fastaq-make_random_contigs.1 usr/share/man/man1/fastaq-merge.1 usr/share/man/man1/fastaq-replace_bases.1 usr/share/man/man1/fastaq-reverse_complement.1 usr/share/man/man1/fastaq-scaffolds_to_contigs.1 usr/share/man/man1/fastaq-search_for_seq.1 usr/share/man/man1/fastaq-sequence_trim.1 usr/share/man/man1/fastaq-sort_by_name.1 usr/share/man/man1/fastaq-sort_by_size.1 usr/share/man/man1/fastaq-split_by_base_count.1 usr/share/man/man1/fastaq-strip_illumina_suffix.1 usr/share/man/man1/fastaq-to_boulderio.1 usr/share/man/man1/fastaq-to_fake_qual.1 usr/share/man/man1/fastaq-to_fasta.1 usr/share/man/man1/fastaq-to_mira_xml.1 usr/share/man/man1/fastaq-to_orfs_gff.1 usr/share/man/man1/fastaq-to_perfect_reads.1 usr/share/man/man1/fastaq-to_random_subset.1 usr/share/man/man1/fastaq-to_tiling_bam.1 usr/share/man/man1/fastaq-to_unique_by_id.1 usr/share/man/man1/fastaq-translate.1 usr/share/man/man1/fastaq-trim_Ns_at_end.1 usr/share/man/man1/fastaq-trim_contigs.1 usr/share/man/man1/fastaq-trim_ends.1 usr/share/man/man1/fastaq-version.1 usr/share/man/man1/fastaq.1 cd '/build/fastaq-frGK3M/fastaq-3.17.0' dh_fixperms -i -O--buildsystem=pybuild find debian/fastaq -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/fastaq ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/fastaq/usr/share/doc -type f -a -true -a ! -regex 'debian/fastaq/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastaq/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/fastaq/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastaq -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastaq/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/fastaq/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -i -O--buildsystem=pybuild dh_installdeb -i -O--buildsystem=pybuild install -d debian/fastaq/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/fastaq/DEBIAN/postinst cat debian/fastaq.postinst.debhelper >> debian/fastaq/DEBIAN/postinst chmod 0755 -- debian/fastaq/DEBIAN/postinst chown 0:0 -- debian/fastaq/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/fastaq/DEBIAN/prerm cat debian/fastaq.prerm.debhelper >> debian/fastaq/DEBIAN/prerm chmod 0755 -- debian/fastaq/DEBIAN/prerm chown 0:0 -- debian/fastaq/DEBIAN/prerm dh_gencontrol -i -O--buildsystem=pybuild echo misc:Depends= >> debian/fastaq.substvars echo misc:Pre-Depends= >> debian/fastaq.substvars dpkg-gencontrol -pfastaq -ldebian/changelog -Tdebian/fastaq.substvars -Pdebian/fastaq -UMulti-Arch chmod 0644 -- debian/fastaq/DEBIAN/control chown 0:0 -- debian/fastaq/DEBIAN/control dh_md5sums -i -O--buildsystem=pybuild cd debian/fastaq >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/fastaq/DEBIAN/md5sums chown 0:0 -- debian/fastaq/DEBIAN/md5sums dh_builddeb -i -O--buildsystem=pybuild dpkg-deb --build debian/fastaq .. dpkg-deb: building package 'fastaq' in '../fastaq_3.17.0-3_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../fastaq_3.17.0-3_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/fastaq-frGK3M /tmp/fastaq-3.17.0-332zymv_1 I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.2r31ANdbJ4... I: success in 327.3344 seconds md5: fastaq_3.17.0-3_all.deb: OK sha1: fastaq_3.17.0-3_all.deb: OK sha256: fastaq_3.17.0-3_all.deb: OK Checksums: OK