Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/f/fast5/fast5_0.6.5-7+b1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/fast5-0.6.5-7+b1jnbhbqar/fast5_0.6.5-7+b1_amd64.buildinfo Get source package info: fast5=0.6.5-7 Source URL: http://snapshot.notset.fr/mr/package/fast5/0.6.5-7/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.5-1.3 autopoint=0.21-6 autotools-dev=20220109.1 base-files=12.2 base-passwd=3.5.52 bash=5.1-6.1 binutils=2.38.90.20220713-2 binutils-common=2.38.90.20220713-2 binutils-x86-64-linux-gnu=2.38.90.20220713-2 bsdextrautils=2.38-5 bsdutils=1:2.38-5 build-essential=12.9 bzip2=1.0.8-5 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.3.0-5 cython3=0.29.30-1 dash=0.5.11+git20210903+057cd650a4ed-8 debconf=1.5.79 debhelper=13.8 debianutils=5.7-0.2 dh-autoreconf=20 dh-python=5.20220403 dh-strip-nondeterminism=1.13.0-1 diffutils=1:3.7-5 dpkg=1.21.9 dpkg-dev=1.21.9 dwz=0.14-1 file=1:5.41-4 findutils=4.9.0-3 g++=4:11.2.0-2 g++-11=11.3.0-5 gcc=4:11.2.0-2 gcc-11=11.3.0-5 gcc-11-base=11.3.0-5 gcc-12-base=12.1.0-7 gettext=0.21-6 gettext-base=0.21-6 grep=3.7-1 groff-base=1.22.4-8 gzip=1.12-1 hdf5-helpers=1.10.7+repack-4+b1 hostname=3.23 init-system-helpers=1.64 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libaec-dev=1.0.6-1 libaec0=1.0.6-1 libarchive-zip-perl=1.68-1 libasan6=11.3.0-5 libatomic1=12.1.0-7 libattr1=1:2.5.1-1 libaudit-common=1:3.0.7-1 libaudit1=1:3.0.7-1+b1 libbinutils=2.38.90.20220713-2 libblkid1=2.38-5 libboost-python-dev=1.74.0.3 libboost-python1.74-dev=1.74.0-16.1 libboost-python1.74.0=1.74.0-16.1 libboost1.74-dev=1.74.0-16.1 libbrotli1=1.0.9-2+b3 libbz2-1.0=1.0.8-5 libc-bin=2.33-8 libc-dev-bin=2.33-8 libc6=2.33-8 libc6-dev=2.33-8 libcap-ng0=0.8.3-1 libcap2=1:2.44-1 libcc1-0=12.1.0-7 libcom-err2=1.46.5-2 libcrypt-dev=1:4.4.28-2 libcrypt1=1:4.4.28-2 libctf-nobfd0=2.38.90.20220713-2 libctf0=2.38.90.20220713-2 libcurl4=7.84.0-2 libcurl4-openssl-dev=7.84.0-2 libdb5.3=5.3.28+dfsg1-0.10 libdebconfclient0=0.263 libdebhelper-perl=13.8 libdpkg-perl=1.21.9 libelf1=0.187-1 libexpat1=2.4.8-1 libexpat1-dev=2.4.8-1 libffi8=3.4.2-4 libfile-stripnondeterminism-perl=1.13.0-1 libgcc-11-dev=11.3.0-5 libgcc-s1=12.1.0-7 libgcrypt20=1.10.1-2 libgdbm-compat4=1.23-1 libgdbm6=1.23-1 libgfortran5=12.1.0-7 libgmp10=2:6.2.1+dfsg1-1 libgnutls30=3.7.6-2 libgomp1=12.1.0-7 libgpg-error0=1.45-2 libgprofng0=2.38.90.20220713-2 libgssapi-krb5-2=1.19.2-2+b2 libhdf5-103-1=1.10.7+repack-4+b1 libhdf5-cpp-103-1=1.10.7+repack-4+b1 libhdf5-dev=1.10.7+repack-4+b1 libhdf5-fortran-102=1.10.7+repack-4+b1 libhdf5-hl-100=1.10.7+repack-4+b1 libhdf5-hl-cpp-100=1.10.7+repack-4+b1 libhdf5-hl-fortran-100=1.10.7+repack-4+b1 libhogweed6=3.7.3-1 libicu71=71.1-3 libidn2-0=2.3.3-1 libisl23=0.25-1 libitm1=12.1.0-7 libjpeg-dev=1:2.1.2-1 libjpeg62-turbo=1:2.1.2-1 libjpeg62-turbo-dev=1:2.1.2-1 libjs-jquery=3.6.0+dfsg+~3.5.13-1 libjs-sphinxdoc=4.5.0-4 libjs-underscore=1.13.3~dfsg+~1.11.4-1 libk5crypto3=1.19.2-2+b2 libkeyutils1=1.6.3-1 libkrb5-3=1.19.2-2+b2 libkrb5support0=1.19.2-2+b2 libldap-2.5-0=2.5.12+dfsg-2 liblsan0=12.1.0-7 liblz4-1=1.9.3-2 liblzma5=5.2.5-2.1 libmagic-mgc=1:5.41-4 libmagic1=1:5.41-4 libmount1=2.38-5 libmpc3=1.2.1-2 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libncursesw6=6.3+20220423-2 libnettle8=3.7.3-1 libnghttp2-14=1.48.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libp11-kit0=0.24.1-1 libpam-modules=1.4.0-13 libpam-modules-bin=1.4.0-13 libpam-runtime=1.4.0-13 libpam0g=1.4.0-13 libpcre2-8-0=10.40-1 libpcre3=2:8.39-14 libperl5.34=5.34.0-5 libpipeline1=1.5.6-1 libpsl5=0.21.0-1.2 libpython3-all-dev=3.10.5-3 libpython3-dev=3.10.5-3 libpython3-stdlib=3.10.5-3 libpython3.10=3.10.5-1 libpython3.10-dev=3.10.5-1 libpython3.10-minimal=3.10.5-1 libpython3.10-stdlib=3.10.5-1 libquadmath0=12.1.0-7 libreadline8=8.1.2-1.2 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.28+dfsg-6 libsasl2-modules-db=2.1.28+dfsg-6 libseccomp2=2.5.4-1 libselinux1=3.4-1 libsigsegv2=2.14-1 libsmartcols1=2.38-5 libsqlite3-0=3.39.2-1 libssh2-1=1.10.0-3+b1 libssl-dev=3.0.4-2 libssl3=3.0.4-2 libstdc++-11-dev=11.3.0-5 libstdc++6=12.1.0-7 libsub-override-perl=0.09-3 libsystemd0=251.3-1 libsz2=1.0.6-1 libtasn1-6=4.18.0-4 libtinfo6=6.3+20220423-2 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.7-4 libtsan0=11.3.0-5 libubsan1=12.1.0-7 libuchardet0=0.0.7-1 libudev1=251.3-1 libunistring2=1.0-1 libuuid1=2.38-5 libxml2=2.9.14+dfsg-1 libzstd1=1.5.2+dfsg-1 linux-libc-dev=5.18.5-1 login=1:4.11.1+dfsg1-2 lsb-base=11.2 m4=1.4.18-5 make=4.3-4.1 man-db=2.10.2-1 mawk=1.3.4.20200120-3.1 media-types=8.0.0 ncurses-base=6.3+20220423-2 ncurses-bin=6.3+20220423-2 patch=2.7.6-7 perl=5.34.0-5 perl-base=5.34.0-5 perl-modules-5.34=5.34.0-5 po-debconf=1.0.21+nmu1 python3=3.10.5-3 python3-all=3.10.5-3 python3-all-dev=3.10.5-3 python3-dev=3.10.5-3 python3-distutils=3.10.5-2 python3-lib2to3=3.10.5-2 python3-minimal=3.10.5-3 python3-pkg-resources=59.6.0-1.2 python3-setuptools=59.6.0-1.2 python3.10=3.10.5-1 python3.10-dev=3.10.5-1 python3.10-minimal=3.10.5-1 readline-common=8.1.2-1.2 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sgml-base=1.30 sysvinit-utils=3.03-1 tar=1.34+dfsg-1 util-linux=2.38-5 util-linux-extra=2.38-5 xz-utils=5.2.5-2.1 zlib1g=1:1.2.11.dfsg-4 zlib1g-dev=1:1.2.11.dfsg-4 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220628T032327Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220628T032327Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220804T091827Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20220722T085138Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d fast5=0.6.5-7 && mkdir -p /build/fast5-rp2FPw && dpkg-source --no-check -x /*.dsc /build/fast5-rp2FPw/fast5-0.6.5 && cd /build/fast5-rp2FPw/fast5-0.6.5 && { printf '%s' 'fast5 (0.6.5-7+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Python 3.10 only -- amd64 / i386 Build Daemon (x86-ubc-01) Sat, 23 Jul 2022 14:15:11 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/fast5-rp2FPw" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/fast5-rp2FPw/fast5-0.6.5 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1658585711" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/fast5-rp2FPw /tmp/fast5-0.6.5-7+b1jnbhbqar bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20220722T085138Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.Gld7_3NgvZ as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.Gld7_3NgvZ Reading package lists... Building dependency tree... util-linux is already the newest version (2.38-5). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 136 kB of archives. After this operation, 401 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20220722T085138Z unstable/main amd64 libfakeroot amd64 1.29-1 [48.5 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220722T085138Z unstable/main amd64 fakeroot amd64 1.29-1 [87.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 136 kB in 0s (512 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4625 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.29-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.29-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.29-1_amd64.deb ... Unpacking fakeroot (1.29-1) ... Setting up libfakeroot:amd64 (1.29-1) ... Setting up fakeroot (1.29-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-8) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220628T032327Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220628T032327Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220804T091827Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20220722T085138Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.Gld7_3NgvZ Get:1 http://snapshot.notset.fr/archive/debian/20220628T032327Z bookworm InRelease [130 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220804T091827Z unstable InRelease [192 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20220722T085138Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20220628T032327Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220628T032327Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20220628T032327Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220628T032327Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20220628T032327Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220628T032327Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20220628T032327Z bookworm/main Sources [12.1 MB] Get:5 http://snapshot.notset.fr/archive/debian/20220628T032327Z bookworm/main amd64 Packages [11.5 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20220804T091827Z unstable/main amd64 Packages Err:6 http://snapshot.notset.fr/archive/debian/20220804T091827Z unstable/main amd64 Packages 404 Not Found [IP: 10.13.0.253 80] Ign:6 http://snapshot.notset.fr/archive/debian/20220804T091827Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20220804T091827Z unstable/main amd64 Packages [12.6 MB] Fetched 36.5 MB in 30s (1203 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.Gld7_3NgvZ I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d fast5=0.6.5-7 && mkdir -p /build/fast5-rp2FPw && dpkg-source --no-check -x /*.dsc /build/fast5-rp2FPw/fast5-0.6.5 && cd /build/fast5-rp2FPw/fast5-0.6.5 && { printf '%s' 'fast5 (0.6.5-7+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Python 3.10 only -- amd64 / i386 Build Daemon (x86-ubc-01) Sat, 23 Jul 2022 14:15:11 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/fast5-rp2FPw"' exec /tmp/mmdebstrap.Gld7_3NgvZ Reading package lists... NOTICE: 'fast5' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/fast5.git Please use: git clone https://salsa.debian.org/med-team/fast5.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 102 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20220628T032327Z bookworm/main fast5 0.6.5-7 (dsc) [2339 B] Get:2 http://snapshot.notset.fr/archive/debian/20220628T032327Z bookworm/main fast5 0.6.5-7 (tar) [93.6 kB] Get:3 http://snapshot.notset.fr/archive/debian/20220628T032327Z bookworm/main fast5 0.6.5-7 (diff) [5540 B] Fetched 102 kB in 0s (484 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'fast5_0.6.5-7.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting fast5 in /build/fast5-rp2FPw/fast5-0.6.5 dpkg-source: info: unpacking fast5_0.6.5.orig.tar.gz dpkg-source: info: unpacking fast5_0.6.5-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying rpath.patch dpkg-source: info: applying gcc-12.patch dpkg-source: info: applying build-flags.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/fast5-rp2FPw/fast5-0.6.5 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1658585711" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.Gld7_3NgvZ dpkg-buildpackage: info: source package fast5 dpkg-buildpackage: info: source version 0.6.5-7+b1 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by amd64 / i386 Build Daemon (x86-ubc-01) dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from fast5-0.6.5/debian/source/options: --extend-diff-ignore=^[^/]+\.egg-info/|python/fast5/fast5.cpp debian/rules clean dh clean --with python3 --buildsystem=pybuild \ --sourcedirectory=python debian/rules override_dh_auto_clean make[1]: Entering directory '/build/fast5-rp2FPw/fast5-0.6.5' cd src && /usr/bin/make clean make[2]: Entering directory '/build/fast5-rp2FPw/fast5-0.6.5/src' rm -rf f5ls f5ls-full hdf5-mod f5-mod f5dump f5pack make[2]: Leaving directory '/build/fast5-rp2FPw/fast5-0.6.5/src' dh_auto_clean I: pybuild base:239: python3.10 setup.py clean /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/fast5-rp2FPw/fast5-0.6.5/python/fast5/fast5.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling fast5/fast5.pyx because it changed. [1/1] Cythonizing fast5/fast5.pyx running clean removing '/build/fast5-rp2FPw/fast5-0.6.5/.pybuild/cpython3_3.10_fast5/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.10' does not exist -- can't clean it rm -rf python/fast5/fast5.cpp make[1]: Leaving directory '/build/fast5-rp2FPw/fast5-0.6.5' dh_autoreconf_clean -O--buildsystem=pybuild -O--sourcedirectory=python dh_clean -O--buildsystem=pybuild -O--sourcedirectory=python debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild \ --sourcedirectory=python dh_update_autotools_config -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_autoreconf -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_auto_configure -a -O--buildsystem=pybuild -O--sourcedirectory=python I: pybuild base:239: python3.10 setup.py config /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/fast5-rp2FPw/fast5-0.6.5/python/fast5/fast5.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling fast5/fast5.pyx because it changed. [1/1] Cythonizing fast5/fast5.pyx running config dh_auto_build -a -O--buildsystem=pybuild -O--sourcedirectory=python I: pybuild base:239: /usr/bin/python3 setup.py build running build running build_ext building 'fast5' extension creating build creating build/temp.linux-x86_64-3.10 creating build/temp.linux-x86_64-3.10/fast5 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/fast5-rp2FPw/fast5-0.6.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I../src -I/usr/include/python3.10 -c fast5/fast5.cpp -o build/temp.linux-x86_64-3.10/fast5/fast5.o -std=c++11 -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/fast5-rp2FPw/fast5-0.6.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/fast5/fast5.o -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/fast5-rp2FPw/fast5-0.6.5/.pybuild/cpython3_3.10_fast5/build/fast5.cpython-310-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.10 copying and adjusting bin/f5ls -> build/scripts-3.10 copying and adjusting bin/f5pack -> build/scripts-3.10 changing mode of build/scripts-3.10/f5ls from 644 to 755 changing mode of build/scripts-3.10/f5pack from 644 to 755 create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_prep -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_auto_install -a -O--buildsystem=pybuild -O--sourcedirectory=python I: pybuild base:239: /usr/bin/python3 setup.py install --root /build/fast5-rp2FPw/fast5-0.6.5/debian/python3-fast5 running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_ext running build_scripts running install_lib creating /build/fast5-rp2FPw/fast5-0.6.5/debian/python3-fast5 creating /build/fast5-rp2FPw/fast5-0.6.5/debian/python3-fast5/usr creating /build/fast5-rp2FPw/fast5-0.6.5/debian/python3-fast5/usr/lib creating /build/fast5-rp2FPw/fast5-0.6.5/debian/python3-fast5/usr/lib/python3.10 creating /build/fast5-rp2FPw/fast5-0.6.5/debian/python3-fast5/usr/lib/python3.10/dist-packages copying /build/fast5-rp2FPw/fast5-0.6.5/.pybuild/cpython3_3.10_fast5/build/fast5.cpython-310-x86_64-linux-gnu.so -> /build/fast5-rp2FPw/fast5-0.6.5/debian/python3-fast5/usr/lib/python3.10/dist-packages running install_egg_info running egg_info creating fast5.egg-info writing fast5.egg-info/PKG-INFO writing dependency_links to fast5.egg-info/dependency_links.txt writing top-level names to fast5.egg-info/top_level.txt writing manifest file 'fast5.egg-info/SOURCES.txt' reading manifest file 'fast5.egg-info/SOURCES.txt' writing manifest file 'fast5.egg-info/SOURCES.txt' Copying fast5.egg-info to /build/fast5-rp2FPw/fast5-0.6.5/debian/python3-fast5/usr/lib/python3.10/dist-packages/fast5-0.6.2.egg-info Skipping SOURCES.txt running install_scripts creating /build/fast5-rp2FPw/fast5-0.6.5/debian/python3-fast5/usr/bin copying build/scripts-3.10/f5ls -> /build/fast5-rp2FPw/fast5-0.6.5/debian/python3-fast5/usr/bin copying build/scripts-3.10/f5pack -> /build/fast5-rp2FPw/fast5-0.6.5/debian/python3-fast5/usr/bin changing mode of /build/fast5-rp2FPw/fast5-0.6.5/debian/python3-fast5/usr/bin/f5ls to 755 changing mode of /build/fast5-rp2FPw/fast5-0.6.5/debian/python3-fast5/usr/bin/f5pack to 755 debian/rules override_dh_install make[1]: Entering directory '/build/fast5-rp2FPw/fast5-0.6.5' dh_install mkdir -p debian/fast5/usr/bin/ mv debian/python3-fast5/usr/bin/* debian/fast5/usr/bin/ make[1]: Leaving directory '/build/fast5-rp2FPw/fast5-0.6.5' dh_installdocs -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_installchangelogs -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_installexamples -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_python3 -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_installsystemduser -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_perl -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_link -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_strip_nondeterminism -a -O--buildsystem=pybuild -O--sourcedirectory=python debian/rules override_dh_compress make[1]: Entering directory '/build/fast5-rp2FPw/fast5-0.6.5' cd src && /usr/bin/make clean make[2]: Entering directory '/build/fast5-rp2FPw/fast5-0.6.5/src' rm -rf f5ls f5ls-full hdf5-mod f5-mod f5dump f5pack make[2]: Leaving directory '/build/fast5-rp2FPw/fast5-0.6.5/src' dh_compress -X .cpp -X .hpp make[1]: Leaving directory '/build/fast5-rp2FPw/fast5-0.6.5' dh_fixperms -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_missing -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_dwz -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_strip -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_makeshlibs -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_shlibdeps -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_installdeb -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_gencontrol -a -O--buildsystem=pybuild -O--sourcedirectory=python dpkg-gencontrol: warning: package python3-fast5: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-fast5: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-fast5: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-fast5: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_builddeb -a -O--buildsystem=pybuild -O--sourcedirectory=python dpkg-deb: building package 'python3-fast5-dbgsym' in '../python3-fast5-dbgsym_0.6.5-7+b1_amd64.deb'. dpkg-deb: building package 'python3-fast5' in '../python3-fast5_0.6.5-7+b1_amd64.deb'. dpkg-genbuildinfo --build=any -O../fast5_0.6.5-7+b1_amd64.buildinfo dpkg-genchanges --build=any -O../fast5_0.6.5-7+b1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-source: info: using options from fast5-0.6.5/debian/source/options: --extend-diff-ignore=^[^/]+\.egg-info/|python/fast5/fast5.cpp dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/fast5-rp2FPw /tmp/fast5-0.6.5-7+b1jnbhbqar I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.Gld7_3NgvZ... I: success in 442.6915 seconds md5: python3-fast5-dbgsym_0.6.5-7+b1_amd64.deb: OK md5: python3-fast5_0.6.5-7+b1_amd64.deb: OK sha1: python3-fast5-dbgsym_0.6.5-7+b1_amd64.deb: OK sha1: python3-fast5_0.6.5-7+b1_amd64.deb: OK sha256: python3-fast5-dbgsym_0.6.5-7+b1_amd64.deb: OK sha256: python3-fast5_0.6.5-7+b1_amd64.deb: OK Checksums: OK