Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/e/epigrass/epigrass_3.0.3+dfsg-2_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/epigrass-3.0.3+dfsg-2by6f8hrq/epigrass_3.0.3+dfsg-2_all.buildinfo Get source package info: epigrass=3.0.3+dfsg-2 Source URL: http://snapshot.notset.fr/mr/package/epigrass/3.0.3+dfsg-2/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.5-1.1 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.52 bash=5.1-5 binutils=2.37-10 binutils-common=2.37-10 binutils-x86-64-linux-gnu=2.37-10 blt=2.5.3+dfsg-4.1 bsdextrautils=2.37.2-4 bsdutils=1:2.37.2-4 build-essential=12.9 bzip2=1.0.8-5 ca-certificates=20211016 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-12 cython3=0.29.24-1+b1 dash=0.5.11+git20210903+057cd650a4ed-3 debconf=1.5.79 debhelper=13.5.2 debianutils=5.5-1 dh-autoreconf=20 dh-python=5.20211114 dh-strip-nondeterminism=1.12.1-1 diffutils=1:3.7-5 docutils-common=0.17.1+dfsg-2 dpkg=1.20.9 dpkg-dev=1.20.9 dwz=0.14-1 file=1:5.41-2 findutils=4.8.0-1 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 fonts-lmodern=2.004.5-6.1 fonts-lyx=2.3.6-1 g++=4:11.2.0-2 g++-11=11.2.0-12 gcc=4:11.2.0-2 gcc-11=11.2.0-12 gcc-11-base=11.2.0-12 gdal-data=3.3.3+dfsg-2 gettext=0.21-4 gettext-base=0.21-4 grep=3.7-1 groff-base=1.22.4-7 gzip=1.10-4 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 latexmk=1:4.76-1 libacl1=2.3.1-1 libaec0=1.0.6-1 libaom3=3.2.0-2 libapache-pom-java=18-1 libarchive-zip-perl=1.68-1 libarmadillo10=1:10.7.4+dfsg-1+b1 libarpack2=3.8.0-1 libasan6=11.2.0-12 libatomic1=11.2.0-12 libattr1=1:2.5.1-1 libaudit-common=1:3.0.6-1 libaudit1=1:3.0.6-1+b1 libbinutils=2.37-10 libblas3=3.10.0-1 libblkid1=2.37.2-4 libbrotli1=1.0.9-2+b3 libbsd0=0.11.3-1 libbz2-1.0=1.0.8-5 libc-bin=2.32-5 libc-dev-bin=2.32-5 libc6=2.32-5 libc6-dev=2.32-5 libcairo2=1.16.0-5 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcc1-0=11.2.0-12 libcfitsio9=4.0.0-1 libcharls2=2.2.0+dfsg-3 libcom-err2=1.46.4-1 libcommons-logging-java=1.2-2 libcommons-parent-java=43-1 libcrypt-dev=1:4.4.26-1 libcrypt1=1:4.4.26-1 libctf-nobfd0=2.37-10 libctf0=2.37-10 libcurl3-gnutls=7.79.1-2 libcurl4=7.79.1-2 libdav1d5=0.9.2-1+b1 libdb5.3=5.3.28+dfsg1-0.8 libde265-0=1.0.8-1 libdebconfclient0=0.261 libdebhelper-perl=13.5.2 libdeflate0=1.8-1 libdpkg-perl=1.20.9 libedit2=3.1-20210910-1 libelf1=0.186-1 libexpat1=2.4.1-3 libexpat1-dev=2.4.1-3 libffi8=3.4.2-3 libfile-stripnondeterminism-perl=1.12.1-1 libfontbox-java=1:1.8.16-2 libfontconfig1=2.13.1-4.2 libfontenc1=1:1.1.4-1 libfreetype6=2.11.0+dfsg-1 libfreexl1=1.0.6-1 libfribidi0=1.0.8-2 libfyba0=4.1.1-7 libgcc-11-dev=11.2.0-12 libgcc-s1=11.2.0-12 libgcrypt20=1.9.4-4 libgdal29=3.3.3+dfsg-2 libgdbm-compat4=1.22-1 libgdbm6=1.22-1 libgeos-c1v5=3.10.1-1 libgeos3.10.1=3.10.1-1 libgeotiff5=1.7.0-2+b1 libgfortran5=11.2.0-12 libgif7=5.1.9-2 libglib2.0-0=2.70.2-1 libgmp10=2:6.2.1+dfsg-3 libgnutls30=3.7.2-2 libgomp1=11.2.0-12 libgpg-error0=1.42-3 libgraphite2-3=1.3.14-1 libgssapi-krb5-2=1.18.3-7 libharfbuzz0b=2.7.4-1 libhdf4-0-alt=4.2.15-4+b1 libhdf5-103-1=1.10.7+repack-4 libhdf5-hl-100=1.10.7+repack-4 libheif1=1.12.0-2+b3 libhogweed6=3.7.3-1 libice6=2:1.0.10-1 libicu67=67.1-7 libidn2-0=2.3.2-2 libimagequant0=2.12.2-1.1 libisl23=0.24-2 libitm1=11.2.0-12 libjbig0=2.1-3.1+b2 libjpeg62-turbo=1:2.1.2-1 libjs-jquery=3.5.1+dfsg+~3.5.5-8 libjs-jquery-ui=1.13.0+dfsg-1 libjs-sphinxdoc=4.3.1-1 libjs-underscore=1.9.1~dfsg-4 libjson-c5=0.15-2 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkmlbase1=1.3.0-9 libkmldom1=1.3.0-9 libkmlengine1=1.3.0-9 libkpathsea6=2021.20210626.59705-1 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 liblapack3=3.10.0-1 liblbfgsb0=3.0+dfsg.3-9 liblcms2-2=2.12~rc1-2 libldap-2.4-2=2.4.59+dfsg-1 liblsan0=11.2.0-12 libltdl7=2.4.6-15 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.41-2 libmagic1=1:5.41-2 libmariadb3=1:10.6.5-1 libmd0=1.0.4-1 libminizip1=1.1-8+b1 libmount1=2.37.2-4 libmpc3=1.2.1-1 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libncursesw6=6.3-1 libnetcdf19=1:4.8.1-1 libnettle8=3.7.3-1 libnghttp2-14=1.43.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnspr4=2:4.32-3 libnss3=2:3.73-1 libnuma1=2.0.14-3 libodbc1=2.3.9-4 libodbc2=2.3.9-4 libodbccr2=2.3.9-4 libodbcinst2=2.3.9-4 libogdi4.1=4.1.0+ds-5+b1 libopenjp2-7=2.4.0-3 libp11-kit0=0.24.0-6 libpam-modules=1.4.0-10 libpam-modules-bin=1.4.0-10 libpam-runtime=1.4.0-10 libpam0g=1.4.0-10 libpaper-utils=1.1.28+b1 libpaper1=1.1.28+b1 libpcre2-8-0=10.39-3 libpcre3=2:8.39-13 libpdfbox-java=1:1.8.16-2 libperl5.32=5.32.1-6 libpipeline1=1.5.4-1 libpixman-1-0=0.40.0-1 libpng16-16=1.6.37-3 libpoppler102=20.09.0-3.1 libpq5=14.1-3 libproj22=8.2.0-1 libpsl5=0.21.0-1.2 libptexenc1=2021.20210626.59705-1 libpython3-dev=3.9.8-1 libpython3-stdlib=3.9.8-1 libpython3.10-minimal=3.10.0-5 libpython3.10-stdlib=3.10.0-5 libpython3.9=3.9.9-1 libpython3.9-dev=3.9.9-1 libpython3.9-minimal=3.9.9-1 libpython3.9-stdlib=3.9.9-1 libqhull-r8.0=2020.2-4 libqhull8.0=2020.2-4 libquadmath0=11.2.0-12 libraqm0=0.7.0-4 libreadline8=8.1-2 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 librttopo1=1.1.0-2 libsasl2-2=2.1.27+dfsg2-2 libsasl2-modules-db=2.1.27+dfsg2-2 libseccomp2=2.5.3-2 libselinux1=3.3-1+b1 libsigsegv2=2.13-1 libsm6=2:1.2.3-1 libsmartcols1=2.37.2-4 libspatialite7=5.0.1-2+b1 libsqlite3-0=3.36.0-2 libssh2-1=1.10.0-2 libssl1.1=1.1.1l-1 libstdc++-11-dev=11.2.0-12 libstdc++6=11.2.0-12 libsub-override-perl=0.09-2 libsuperlu5=5.3.0+dfsg1-2 libsynctex2=2021.20210626.59705-1 libsystemd0=249.7-1 libsz2=1.0.6-1 libtasn1-6=4.18.0-4 libtcl8.6=8.6.12+dfsg-1 libteckit0=2.5.11+ds1-1 libtexlua53=2021.20210626.59705-1 libtexluajit2=2021.20210626.59705-1 libtiff5=4.3.0-2 libtinfo6=6.3-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtk8.6=8.6.12-1 libtool=2.4.6-15 libtsan0=11.2.0-12 libubsan1=11.2.0-12 libuchardet0=0.0.7-1 libudev1=249.7-1 libunistring2=0.9.10-6 liburiparser1=0.9.5+dfsg-2 libuuid1=2.37.2-4 libwebp6=0.6.1-2.1 libwebpdemux2=0.6.1-2.1 libwebpmux3=0.6.1-2.1 libx11-6=2:1.7.2-2+b1 libx11-data=2:1.7.2-2 libx265-199=3.5-2 libxau6=1:1.0.9-1 libxaw7=2:1.0.13-1.1 libxcb-render0=1.14-3 libxcb-shm0=1.14-3 libxcb1=1.14-3 libxdmcp6=1:1.1.2-3 libxerces-c3.2=3.2.3+debian-3 libxext6=2:1.3.4-1 libxft2=2.3.2-2 libxi6=2:1.8-1 libxml2=2.9.12+dfsg-5+b1 libxmu6=2:1.1.2-2+b3 libxpm4=1:3.5.12-1 libxrender1=1:0.9.10-1 libxslt1.1=1.1.34-4 libxss1=1:1.2.3-1 libxt6=1:1.2.0-1 libzstd1=1.4.8+dfsg-3 libzzip-0-13=0.13.72+dfsg.1-1.1 linux-libc-dev=5.15.5-1 login=1:4.8.1-2 lsb-base=11.1.0 m4=1.4.18-5 mailcap=3.70+nmu1 make=4.3-4.1 man-db=2.9.4-2 mariadb-common=1:10.5.12-1 mawk=1.3.4.20200120-2 media-types=4.0.0 mime-support=3.66 mysql-common=5.8+1.0.7 ncurses-base=6.3-1 ncurses-bin=6.3-1 odbcinst=2.3.9-4 odbcinst1debian2=2.3.9-4 openssl=1.1.1l-1 patch=2.7.6-7 perl=5.32.1-6 perl-base=5.32.1-6 perl-modules-5.32=5.32.1-6 po-debconf=1.0.21+nmu1 preview-latex-style=12.2-1 proj-data=8.2.0-1 python-babel-localedata=2.8.0+dfsg.1-7 python-matplotlib-data=3.5.0-5 python-pip-whl=20.3.4-4 python3=3.9.8-1 python3-alabaster=0.7.12-1 python3-appdirs=1.4.4-1 python3-attr=20.3.0-1 python3-babel=2.8.0+dfsg.1-7 python3-brotli=1.0.9-2+b3 python3-certifi=2020.6.20-1 python3-chardet=4.0.0-1 python3-commonmark=0.9.1-3 python3-cycler=0.11.0-1 python3-dateutil=2.8.1-6 python3-dbfread=2.0.7-3 python3-decorator=4.4.2-2 python3-dev=3.9.8-1 python3-distlib=0.3.3-1 python3-distutils=3.9.9-2 python3-docutils=0.17.1+dfsg-2 python3-filelock=3.4.0-1 python3-fonttools=4.27.1-1+b1 python3-fs=2.4.12-1 python3-gdal=3.3.3+dfsg-2 python3-idna=2.10-1 python3-imagesize=1.3.0-1 python3-importlib-metadata=4.6.4-1 python3-jinja2=3.0.1-2 python3-kiwisolver=1.3.2-1+b1 python3-lib2to3=3.9.9-2 python3-lxml=4.6.4-1 python3-lz4=3.1.3+dfsg-1+b1 python3-markupsafe=2.0.1-2+b1 python3-matplotlib=3.5.0-5 python3-minimal=3.9.8-1 python3-more-itertools=8.10.0-2 python3-mpmath=1.2.1-2 python3-networkx=2.5+ds-2 python3-numpy=1:1.21.4-2 python3-packaging=21.3-1 python3-pil=8.4.0-1 python3-pil.imagetk=8.4.0-1 python3-pip=20.3.4-4 python3-pkg-resources=59.4.0-1 python3-platformdirs=2.4.0-2 python3-pygments=2.7.1+dfsg-2.1 python3-pymysql=1.0.2-2 python3-pyparsing=2.4.7-1 python3-recommonmark=0.6.0+ds-1 python3-redis=3.5.3-2 python3-requests=2.25.1+dfsg-2 python3-roman=3.3-1 python3-scipy=1.7.1-2+b1 python3-setuptools=59.4.0-1 python3-six=1.16.0-2 python3-snowballstemmer=2.2.0-1 python3-sphinx=4.3.1-1 python3-sympy=1.7.1-3 python3-tk=3.9.9-2 python3-tqdm=4.57.0-2 python3-tz=2021.3-1 python3-ufolib2=0.11.1+dfsg1-1 python3-urllib3=1.26.5-1~exp1 python3-virtualenv=20.10.0+ds-1 python3-wheel=0.34.2-1 python3-zipp=1.0.0-3 python3.10=3.10.0-5 python3.10-minimal=3.10.0-5 python3.9=3.9.9-1 python3.9-dev=3.9.9-1 python3.9-minimal=3.9.9-1 readline-common=8.1-2 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sgml-base=1.30 sphinx-common=4.3.1-1 sysvinit-utils=3.00-1 t1utils=1.41-4 tar=1.34+dfsg-1 tex-common=6.17 tex-gyre=20180621-3.1 texlive-base=2021.20211127-1 texlive-binaries=2021.20210626.59705-1 texlive-fonts-recommended=2021.20211127-1 texlive-latex-base=2021.20211127-1 texlive-latex-extra=2021.20211127-1 texlive-latex-recommended=2021.20211127-1 texlive-pictures=2021.20211127-1 tk8.6-blt2.5=2.5.3+dfsg-4.1 tzdata=2021e-1 ucf=3.0043 unicode-data=14.0.0-1.1 unixodbc-common=2.3.9-4 util-linux=2.37.2-4 x11-common=1:7.7+23 xdg-utils=1.1.3-4.1 xfonts-encodings=1:1.0.4-2.1 xfonts-utils=1:7.7+6 xml-core=0.18+nmu1 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211206T153429Z/ unstable main deb-src http://snapshot.notset.fr/archive/debian/20211206T153429Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20211210T031943Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20211205T210857Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d epigrass=3.0.3+dfsg-2 && mkdir -p /build/epigrass-VHnZGr && dpkg-source --no-check -x /*.dsc /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg && chown -R builduser:builduser /build/epigrass-VHnZGr" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1638783217" dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/epigrass-VHnZGr /tmp/epigrass-3.0.3+dfsg-2by6f8hrq bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20211205T210857Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.9TsLRcCGk1 as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.9TsLRcCGk1 Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-4). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20211205T210857Z unstable/main amd64 libfakeroot amd64 1.26-1 [47.3 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211205T210857Z unstable/main amd64 fakeroot amd64 1.26-1 [87.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (760 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4673 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.26-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.26-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.26-1_amd64.deb ... Unpacking fakeroot (1.26-1) ... Setting up libfakeroot:amd64 (1.26-1) ... Setting up fakeroot (1.26-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.32-5) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211206T153429Z/ unstable main deb-src http://snapshot.notset.fr/archive/debian/20211206T153429Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20211210T031943Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20211205T210857Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.9TsLRcCGk1 Get:1 http://snapshot.notset.fr/archive/debian/20211206T153429Z unstable InRelease [165 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211210T031943Z unstable InRelease [165 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20211205T210857Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20211206T153429Z unstable/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20211206T153429Z unstable/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20211206T153429Z unstable/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20211206T153429Z unstable/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20211206T153429Z unstable/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20211206T153429Z unstable/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20211206T153429Z unstable/main Sources [12.5 MB] Get:5 http://snapshot.notset.fr/archive/debian/20211206T153429Z unstable/main amd64 Packages [12.0 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20211210T031943Z unstable/main amd64 Packages Err:6 http://snapshot.notset.fr/archive/debian/20211210T031943Z unstable/main amd64 Packages 404 Not Found [IP: 10.13.0.253 80] Ign:6 http://snapshot.notset.fr/archive/debian/20211210T031943Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20211210T031943Z unstable/main amd64 Packages [12.0 MB] Fetched 36.8 MB in 33s (1105 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.9TsLRcCGk1 I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d epigrass=3.0.3+dfsg-2 && mkdir -p /build/epigrass-VHnZGr && dpkg-source --no-check -x /*.dsc /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg && chown -R builduser:builduser /build/epigrass-VHnZGr"' exec /tmp/mmdebstrap.9TsLRcCGk1 Reading package lists... NOTICE: 'epigrass' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/epigrass.git Please use: git clone https://salsa.debian.org/med-team/epigrass.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 8527 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20211206T153429Z unstable/main epigrass 3.0.3+dfsg-2 (dsc) [2422 B] Get:2 http://snapshot.notset.fr/archive/debian/20211206T153429Z unstable/main epigrass 3.0.3+dfsg-2 (tar) [8509 kB] Get:3 http://snapshot.notset.fr/archive/debian/20211206T153429Z unstable/main epigrass 3.0.3+dfsg-2 (diff) [15.4 kB] Fetched 8527 kB in 16s (524 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'epigrass_3.0.3+dfsg-2.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting epigrass in /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg dpkg-source: info: unpacking epigrass_3.0.3+dfsg.orig.tar.xz dpkg-source: info: unpacking epigrass_3.0.3+dfsg-2.debian.tar.xz I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1638783217" dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.9TsLRcCGk1 dpkg-buildpackage: info: source package epigrass dpkg-buildpackage: info: source version 3.0.3+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:237: python3.9 setup.py clean running clean removing '/build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/epigrass-VHnZGr/epigrass-3.0.3+dfsg' dh_clean rm -f Epigrass/epimodels.c make[1]: Leaving directory '/build/epigrass-VHnZGr/epigrass-3.0.3+dfsg' debian/rules binary-indep dh binary-indep --with python3 --buildsystem=pybuild dh_update_autotools_config -i -O--buildsystem=pybuild dh_autoreconf -i -O--buildsystem=pybuild dh_auto_configure -i -O--buildsystem=pybuild I: pybuild base:237: python3.9 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/epigrass-VHnZGr/epigrass-3.0.3+dfsg' dh_auto_build I: pybuild base:237: /usr/bin/python3 setup.py build running build running build_py creating /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build/Epigrass copying Epigrass/__init__.py -> /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build/Epigrass copying Epigrass/__version__.py -> /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build/Epigrass copying Epigrass/dataObject.py -> /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build/Epigrass copying Epigrass/data_io.py -> /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build/Epigrass copying Epigrass/epigdal.py -> /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build/Epigrass copying Epigrass/epipanel.py -> /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build/Epigrass copying Epigrass/extract_sites.py -> /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build/Epigrass copying Epigrass/manager.py -> /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build/Epigrass copying Epigrass/models.py -> /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build/Epigrass copying Epigrass/report.py -> /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build/Epigrass copying Epigrass/rinterface.py -> /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build/Epigrass copying Epigrass/simobj.py -> /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build/Epigrass copying Epigrass/spread.py -> /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build/Epigrass running egg_info creating epigrass.egg-info writing epigrass.egg-info/PKG-INFO writing dependency_links to epigrass.egg-info/dependency_links.txt writing entry points to epigrass.egg-info/entry_points.txt writing requirements to epigrass.egg-info/requires.txt writing top-level names to epigrass.egg-info/top_level.txt writing manifest file 'epigrass.egg-info/SOURCES.txt' reading manifest file 'epigrass.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.py' under directory 'demos/Florida' warning: no files found matching 'docs/build/latex/Epigrass.pdf' no previously-included directories found matching 'docs/source*' warning: no previously-included files matching '__pycache__' found under directory '*' adding license file 'COPYING' writing manifest file 'epigrass.egg-info/SOURCES.txt' copying Epigrass/egicon.png -> /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build/Epigrass copying Epigrass/manager_pt_BR.qm -> /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build/Epigrass copying Epigrass/manager_pt_BR.ts -> /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build/Epigrass cp -a debian/missing-sources/Diagrama1.png docs/source /usr/bin/make -C docs html latex make[2]: Entering directory '/build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/docs' mkdir -p build/html build/doctrees sphinx-build -b html -d build/doctrees source build/html Running Sphinx v4.3.1 WARNING: html_static_path entry '.static' does not exist building [mo]: targets for 0 po files that are out of date building [html]: targets for 7 source files that are out of date updating environment: [new config] 7 added, 0 changed, 0 removed reading sources... [ 14%] analysis reading sources... [ 28%] index reading sources... [ 42%] install reading sources... [ 57%] intromodels reading sources... [ 71%] overview reading sources... [ 85%] scripting reading sources... [100%] using /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/docs/source/intromodels.rst:132: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/docs/source/intromodels.rst:206: WARNING: malformed hyperlink target. /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/docs/source/intromodels.rst:298: WARNING: malformed hyperlink target. /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/docs/source/intromodels.rst:299: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/docs/source/overview.rst:65: WARNING: Definition list ends without a blank line; unexpected unindent. /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/docs/source/overview.rst:67: WARNING: Unexpected indentation. /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/docs/source/overview.rst:68: WARNING: Block quote ends without a blank line; unexpected unindent. /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/docs/source/overview.rst:84: WARNING: Definition list ends without a blank line; unexpected unindent. /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/docs/source/overview.rst:86: WARNING: Unexpected indentation. /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/docs/source/overview.rst:87: WARNING: Block quote ends without a blank line; unexpected unindent. /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/docs/source/using.rst:161: WARNING: Definition list ends without a blank line; unexpected unindent. /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/docs/source/using.rst:167: WARNING: Unexpected indentation. /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/docs/source/using.rst:168: WARNING: Block quote ends without a blank line; unexpected unindent. /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/docs/source/using.rst:172: WARNING: Definition list ends without a blank line; unexpected unindent. /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/docs/source/using.rst:389: WARNING: Definition list ends without a blank line; unexpected unindent. /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/docs/source/using.rst:395: WARNING: Unexpected indentation. looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 14%] analysis writing output... [ 28%] index writing output... [ 42%] install writing output... [ 57%] intromodels writing output... [ 71%] overview writing output... [ 85%] scripting writing output... [100%] using /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/docs/source/intromodels.rst:203: WARNING: undefined label: fig:sipr generating indices... genindex done writing additional pages... search done copying images... [ 16%] SIRdiagram.png copying images... [ 33%] SIpRdiagram.png copying images... [ 50%] simplenet.png copying images... [ 66%] dashboard1.png copying images... [ 83%] dashboard2.png copying images... [100%] dashboard3.png copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 18 warnings. The HTML pages are in build/html. Build finished. The HTML pages are in build/html. mkdir -p build/latex build/doctrees sphinx-build -b latex -d build/doctrees source build/latex Running Sphinx v4.3.1 WARNING: html_static_path entry '.static' does not exist loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: 0 added, 0 changed, 0 removed looking for now-outdated files... none found processing Epigrass.tex... index overview install intromodels using analysis scripting resolving references... /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/docs/source/intromodels.rst:203: WARNING: undefined label: fig:sipr done writing... done copying images... [ 16%] SIRdiagram.png copying images... [ 33%] SIpRdiagram.png copying images... [ 50%] simplenet.png copying images... [ 66%] dashboard1.png copying images... [ 83%] dashboard2.png copying images... [100%] dashboard3.png copying TeX support files... copying TeX support files... done build succeeded, 2 warnings. The LaTeX files are in build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). Build finished; the LaTeX files are in build/latex. Run `make all-pdf' or `make all-ps' in that directory to run these through (pdf)latex. make[2]: Leaving directory '/build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/docs' cd docs/build/latex && make all-pdf make[2]: Entering directory '/build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/docs/build/latex' latexmk -pdf -dvi- -ps- 'Epigrass.tex' Rc files read: /etc/LatexMk latexmkrc Latexmk: This is Latexmk, John Collins, 20 November 2021, version: 4.76. Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'Epigrass.tex' ------------ Run number 1 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -recorder "Epigrass.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./Epigrass.tex LaTeX2e <2021-11-15> L3 programming layer <2021-11-22> (./sphinxmanual.cls Document Class: sphinxmanual 2019/12/01 v2.3.0 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2021/10/04 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty<>) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf)) (/usr/share/texmf/tex/latex/tex-gyre/tgtermes.sty (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty))) (/usr/share/texmf/tex/latex/tex-gyre/tgheros.sty) (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)) (./sphinxoptionshyperref.sty) (./sphinxoptionsgeometry.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (./sphinxlatexgraphics.sty) (./sphinxlatexadmonitions.sty (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty)) (./sphinxlatexliterals.sty (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty)) (./sphinxlatexshadowbox.sty) (./sphinxlatexcontainers.sty) (./sphinxhighlight.sty) (./sphinxlatextables.sty (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty)) (./sphinxlatexnumfig.sty) (./sphinxlatexlists.sty) (./sphinxpackagefootnote.sty ) (./sphinxlatexindbibtoc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)) (./sphinxlatexstylepage.sty (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip-2001-04-09.sty)) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty)) (./sphinxlatexstyleheadings.sty (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty)) (./sphinxlatexstyletext.sty) (./sphinxlatexobjects.sty)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref-langpatches.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) (./sphinxmessages.sty) Writing index file Epigrass.idx (/usr/share/texmf/tex/latex/tex-gyre/t1qtm.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./Epigrass.aux) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (/usr/share/texlive/texmf-dist/tex/latex/txfonts/t1txtt.fd) (/usr/share/texmf/tex/latex/tex-gyre/t1qhv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map} <./MEMO_logo.png>] [2] [1] [2] [1] [2] Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/txfonts/ts1txtt.fd) [3] [4] [5] [6] Chapter 2. [7] [8] Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 512--524 \T1/qtm/m/n/10 Mod-els of dis-ease dy-nam-ics are quite di-verse, rang-ing from car-i-ca-tures to very de-tailed sim-u- Underfull \hbox (badness 10000) in paragraph at lines 512--524 \T1/qtm/m/n/10 la-tions. Tra-di-tional mod-els of spread of dis-eases are based on the mean field as-sump-tion, i.e., Underfull \hbox (badness 10000) in paragraph at lines 512--524 \T1/qtm/m/n/10 that in-di-vid-u-als in-ter-act ran-domly at a cer-tain rate. Im -por-tant ref-er-ences to the sub-ject are Overfull \hbox (149.075pt too wide) in paragraph at lines 512--524 \T1/qtm/m/n/10 cite{DiekmannOandHeesterbeekJAP2000,DaleyDJandGaniJandCanningsC2 001,IshamVandMedleyG1996,AndersonRMandMayRMandAndersonB1992}. [9] [10] [11 <./SIRdiagram.png>] Package tabulary Warning: No suitable columns! on input line 715. Overfull \hbox (46.48824pt too wide) in paragraph at lines 715--716 [][] [12] [13] [14 <./SIpRdiagram.png>] LaTeX Warning: Hyper reference `analysis:analysis' on page 15 undefined on inpu t line 873. LaTeX Warning: Hyper reference `intromodels:simpnet' on page 15 undefined on in put line 876. [15] [16 <./simplenet.png>] Chapter 4. Package tabulary Warning: No suitable columns! on input line 1108. [17] [18] (/usr/share/texmf/tex/latex/tex-gyre/ts1qtm.fd) [19] [20] [21] [22] [23] [24] [25] [26 <./dashboard1.png (PNG copy)> <./dashboard2.png (PNG co py)>] [27 <./dashboard3.png (PNG copy)>] [28] Chapter 5. [29] [30] Chapter 6. [31] Overfull \hbox (83.44495pt too wide) in paragraph at lines 2404--2404 [] Underfull \hbox (badness 10000) in paragraph at lines 2404--2404 [32] [33] [34] No file Epigrass.ind. [35] (./Epigrass.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. Package rerunfilecheck Warning: File `Epigrass.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ts 1.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ec.enc} Output written on Epigrass.pdf (39 pages, 4134679 bytes). Transcript written on Epigrass.log. Latexmk: Index file 'Epigrass.idx' was written Latexmk: Missing input file 'Epigrass.ind' (or dependence on it) from following: 'No file Epigrass.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'Epigrass.pdf' Rule 'makeindex Epigrass.idx': File changes, etc: Changed files, or newly in use since previous run(s): 'Epigrass.idx' ------------ Run number 1 of rule 'makeindex Epigrass.idx' ------------ ------------ Running 'makeindex -s python.ist -o "Epigrass.ind" "Epigrass.idx"' ------------ Latexmk: Examining 'Epigrass.log' === TeX engine is 'pdfTeX' Latexmk: applying rule 'makeindex Epigrass.idx'... This is makeindex, version 2.15 [TeX Live 2022/dev] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file Epigrass.idx....done (53 entries accepted, 0 rejected). Sorting entries....done (306 comparisons). Generating output file Epigrass.ind....done (100 lines written, 0 warnings). Output written in Epigrass.ind. Transcript written in Epigrass.ilg. Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'Epigrass.aux' 'Epigrass.ind' 'Epigrass.out' ------------ Run number 2 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -recorder "Epigrass.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./Epigrass.tex LaTeX2e <2021-11-15> L3 programming layer <2021-11-22> (./sphinxmanual.cls Document Class: sphinxmanual 2019/12/01 v2.3.0 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2021/10/04 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty<>) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf)) (/usr/share/texmf/tex/latex/tex-gyre/tgtermes.sty (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty))) (/usr/share/texmf/tex/latex/tex-gyre/tgheros.sty) (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)) (./sphinxoptionshyperref.sty) (./sphinxoptionsgeometry.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (./sphinxlatexgraphics.sty) (./sphinxlatexadmonitions.sty (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty)) (./sphinxlatexliterals.sty (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty)) (./sphinxlatexshadowbox.sty) (./sphinxlatexcontainers.sty) (./sphinxhighlight.sty) (./sphinxlatextables.sty (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty)) (./sphinxlatexnumfig.sty) (./sphinxlatexlists.sty) (./sphinxpackagefootnote.sty ) (./sphinxlatexindbibtoc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)) (./sphinxlatexstylepage.sty (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip-2001-04-09.sty)) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty)) (./sphinxlatexstyleheadings.sty (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty)) (./sphinxlatexstyletext.sty) (./sphinxlatexobjects.sty)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref-langpatches.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) (./sphinxmessages.sty) Writing index file Epigrass.idx (/usr/share/texmf/tex/latex/tex-gyre/t1qtm.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./Epigrass.aux) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (./Epigrass.out) (./Epigrass.out) (/usr/share/texlive/texmf-dist/tex/latex/txfonts/t1txtt.fd) (/usr/share/texmf/tex/latex/tex-gyre/t1qhv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map} <./MEMO_logo.png>] [2] (./Epigrass.toc) [1] [2] [1] [2] Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/txfonts/ts1txtt.fd) [3] [4] [5] [6] Chapter 2. [7] [8] Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 512--524 \T1/qtm/m/n/10 Mod-els of dis-ease dy-nam-ics are quite di-verse, rang-ing from car-i-ca-tures to very de-tailed sim-u- Underfull \hbox (badness 10000) in paragraph at lines 512--524 \T1/qtm/m/n/10 la-tions. Tra-di-tional mod-els of spread of dis-eases are based on the mean field as-sump-tion, i.e., Underfull \hbox (badness 10000) in paragraph at lines 512--524 \T1/qtm/m/n/10 that in-di-vid-u-als in-ter-act ran-domly at a cer-tain rate. Im -por-tant ref-er-ences to the sub-ject are Overfull \hbox (149.075pt too wide) in paragraph at lines 512--524 \T1/qtm/m/n/10 cite{DiekmannOandHeesterbeekJAP2000,DaleyDJandGaniJandCanningsC2 001,IshamVandMedleyG1996,AndersonRMandMayRMandAndersonB1992}. [9] [10] [11 <./SIRdiagram.png>] Package tabulary Warning: No suitable columns! on input line 715. Overfull \hbox (46.48824pt too wide) in paragraph at lines 715--716 [][] [12] [13] [14 <./SIpRdiagram.png>] [15] [16 <./simplenet.png>] Chapter 4. Package tabulary Warning: No suitable columns! on input line 1108. [17] [18] (/usr/share/texmf/tex/latex/tex-gyre/ts1qtm.fd) [19] [20] [21] [22] [23] [24] [25] [26 <./dashboard1.png (PNG copy)> <./dashboard2.png (PNG co py)>] [27 <./dashboard3.png (PNG copy)>] [28] Chapter 5. [29] [30] Chapter 6. [31] Overfull \hbox (83.44495pt too wide) in paragraph at lines 2404--2404 [] Underfull \hbox (badness 10000) in paragraph at lines 2404--2404 [32] [33] [34] (./Epigrass.ind [35] [36] [37]) (./Epigrass.aux) Package rerunfilecheck Warning: File `Epigrass.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ts 1.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ec.enc} Output written on Epigrass.pdf (41 pages, 4144842 bytes). Transcript written on Epigrass.log. Latexmk: Index file 'Epigrass.idx' was written Latexmk: References changed. Latexmk: Log file says output to 'Epigrass.pdf' Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'Epigrass.aux' 'Epigrass.out' 'Epigrass.toc' ------------ Run number 3 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -recorder "Epigrass.tex"' ------------ Latexmk: Examining 'Epigrass.log' === TeX engine is 'pdfTeX' Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./Epigrass.tex LaTeX2e <2021-11-15> L3 programming layer <2021-11-22> (./sphinxmanual.cls Document Class: sphinxmanual 2019/12/01 v2.3.0 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2021/10/04 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty<>) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf)) (/usr/share/texmf/tex/latex/tex-gyre/tgtermes.sty (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty))) (/usr/share/texmf/tex/latex/tex-gyre/tgheros.sty) (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)) (./sphinxoptionshyperref.sty) (./sphinxoptionsgeometry.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (./sphinxlatexgraphics.sty) (./sphinxlatexadmonitions.sty (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty)) (./sphinxlatexliterals.sty (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty)) (./sphinxlatexshadowbox.sty) (./sphinxlatexcontainers.sty) (./sphinxhighlight.sty) (./sphinxlatextables.sty (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty)) (./sphinxlatexnumfig.sty) (./sphinxlatexlists.sty) (./sphinxpackagefootnote.sty ) (./sphinxlatexindbibtoc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)) (./sphinxlatexstylepage.sty (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip-2001-04-09.sty)) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty)) (./sphinxlatexstyleheadings.sty (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty)) (./sphinxlatexstyletext.sty) (./sphinxlatexobjects.sty)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref-langpatches.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) (./sphinxmessages.sty) Writing index file Epigrass.idx (/usr/share/texmf/tex/latex/tex-gyre/t1qtm.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./Epigrass.aux) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (./Epigrass.out) (./Epigrass.out) (/usr/share/texlive/texmf-dist/tex/latex/txfonts/t1txtt.fd) (/usr/share/texmf/tex/latex/tex-gyre/t1qhv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map} <./MEMO_logo.png>] [2] (./Epigrass.toc) [1] [2] [1] [2] Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/txfonts/ts1txtt.fd) [3] [4] [5] [6] Chapter 2. [7] [8] Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 512--524 \T1/qtm/m/n/10 Mod-els of dis-ease dy-nam-ics are quite di-verse, rang-ing from car-i-ca-tures to very de-tailed sim-u- Underfull \hbox (badness 10000) in paragraph at lines 512--524 \T1/qtm/m/n/10 la-tions. Tra-di-tional mod-els of spread of dis-eases are based on the mean field as-sump-tion, i.e., Underfull \hbox (badness 10000) in paragraph at lines 512--524 \T1/qtm/m/n/10 that in-di-vid-u-als in-ter-act ran-domly at a cer-tain rate. Im -por-tant ref-er-ences to the sub-ject are Overfull \hbox (149.075pt too wide) in paragraph at lines 512--524 \T1/qtm/m/n/10 cite{DiekmannOandHeesterbeekJAP2000,DaleyDJandGaniJandCanningsC2 001,IshamVandMedleyG1996,AndersonRMandMayRMandAndersonB1992}. [9] [10] [11 <./SIRdiagram.png>] Package tabulary Warning: No suitable columns! on input line 715. Overfull \hbox (46.48824pt too wide) in paragraph at lines 715--716 [][] [12] [13] [14 <./SIpRdiagram.png>] [15] [16 <./simplenet.png>] Chapter 4. Package tabulary Warning: No suitable columns! on input line 1108. [17] [18] (/usr/share/texmf/tex/latex/tex-gyre/ts1qtm.fd) [19] [20] [21] [22] [23] [24] [25] [26 <./dashboard1.png (PNG copy)> <./dashboard2.png (PNG co py)>] [27 <./dashboard3.png (PNG copy)>] [28] Chapter 5. [29] [30] Chapter 6. [31] Overfull \hbox (83.44495pt too wide) in paragraph at lines 2404--2404 [] Underfull \hbox (badness 10000) in paragraph at lines 2404--2404 [32] [33] [34] (./Epigrass.ind [35] [36] [37]) (./Epigrass.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ts 1.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ec.enc} Output written on Epigrass.pdf (41 pages, 4145097 bytes). Transcript written on Epigrass.log. Latexmk: Index file 'Epigrass.idx' was written Latexmk: Log file says output to 'Epigrass.pdf' Latexmk: Examining 'Epigrass.log' === TeX engine is 'pdfTeX' Latexmk: All targets (Epigrass.pdf) are up-to-date make[2]: Leaving directory '/build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/docs/build/latex' rm docs/source/Diagrama1.png make[1]: Leaving directory '/build/epigrass-VHnZGr/epigrass-3.0.3+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/epigrass-VHnZGr/epigrass-3.0.3+dfsg' # remove failing tests since redis server is not setup mkdir -p tests_ignore mv tests/test_manager.py tests/test_models.py tests/tests.py tests_ignore dh_auto_test || true I: pybuild base:237: cd /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build; python3.9 -m unittest discover -v tests.test_epigdal (unittest.loader._FailedTest) ... ERROR ====================================================================== ERROR: tests.test_epigdal (unittest.loader._FailedTest) ---------------------------------------------------------------------- ImportError: Failed to import test module: tests.test_epigdal Traceback (most recent call last): File "/usr/lib/python3.9/unittest/loader.py", line 436, in _find_test_path module = self._get_module_from_name(name) File "/usr/lib/python3.9/unittest/loader.py", line 377, in _get_module_from_name __import__(name) File "/build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build/tests/test_epigdal.py", line 3, in from Epigrass.epigdal import NewWorld as World, KmlGenerator File "/build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build/Epigrass/epigdal.py", line 16, in import geopandas as gpd ModuleNotFoundError: No module named 'geopandas' ---------------------------------------------------------------------- Ran 1 test in 0.000s FAILED (errors=1) E: pybuild pybuild:354: test: plugin distutils failed with: exit code=1: cd /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build; python3.9 -m unittest discover -v dh_auto_test: error: pybuild --test -i python{version} -p 3.9 returned exit code 13 mv tests_ignore/* tests rmdir tests_ignore make[1]: Leaving directory '/build/epigrass-VHnZGr/epigrass-3.0.3+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -i -O--buildsystem=pybuild dh_prep -i -O--buildsystem=pybuild debian/rules override_dh_auto_install make[1]: Entering directory '/build/epigrass-VHnZGr/epigrass-3.0.3+dfsg' dh_auto_install -- --after-install='mv {destdir}/{install_dir}/Epigrass/egicon.png {destdir}/usr/share/pixmaps/epigrass.png; \ ln -s /usr/share/pixmaps/epigrass.png {destdir}/{install_dir}/Epigrass/egicon.png' I: pybuild base:237: /usr/bin/python3 setup.py install --root /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing epigrass.egg-info/PKG-INFO writing dependency_links to epigrass.egg-info/dependency_links.txt writing entry points to epigrass.egg-info/entry_points.txt writing requirements to epigrass.egg-info/requires.txt writing top-level names to epigrass.egg-info/top_level.txt reading manifest file 'epigrass.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.py' under directory 'demos/Florida' no previously-included directories found matching 'docs/source*' warning: no previously-included files matching '__pycache__' found under directory '*' adding license file 'COPYING' writing manifest file 'epigrass.egg-info/SOURCES.txt' running install_lib creating /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass creating /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr creating /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/lib creating /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/lib/python3.9 creating /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/lib/python3.9/dist-packages creating /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/lib/python3.9/dist-packages/Epigrass copying /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build/Epigrass/__init__.py -> /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/lib/python3.9/dist-packages/Epigrass copying /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build/Epigrass/__version__.py -> /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/lib/python3.9/dist-packages/Epigrass copying /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build/Epigrass/dataObject.py -> /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/lib/python3.9/dist-packages/Epigrass copying /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build/Epigrass/data_io.py -> /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/lib/python3.9/dist-packages/Epigrass copying /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build/Epigrass/epigdal.py -> /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/lib/python3.9/dist-packages/Epigrass copying /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build/Epigrass/epipanel.py -> /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/lib/python3.9/dist-packages/Epigrass copying /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build/Epigrass/extract_sites.py -> /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/lib/python3.9/dist-packages/Epigrass copying /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build/Epigrass/manager.py -> /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/lib/python3.9/dist-packages/Epigrass copying /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build/Epigrass/models.py -> /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/lib/python3.9/dist-packages/Epigrass copying /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build/Epigrass/report.py -> /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/lib/python3.9/dist-packages/Epigrass copying /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build/Epigrass/rinterface.py -> /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/lib/python3.9/dist-packages/Epigrass copying /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build/Epigrass/simobj.py -> /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/lib/python3.9/dist-packages/Epigrass copying /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build/Epigrass/spread.py -> /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/lib/python3.9/dist-packages/Epigrass copying /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build/Epigrass/egicon.png -> /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/lib/python3.9/dist-packages/Epigrass copying /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build/Epigrass/manager_pt_BR.qm -> /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/lib/python3.9/dist-packages/Epigrass copying /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build/Epigrass/manager_pt_BR.ts -> /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/lib/python3.9/dist-packages/Epigrass creating /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/lib/python3.9/dist-packages/Epigrass/__pycache__ copying /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build/Epigrass/__pycache__/__init__.cpython-39.pyc -> /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/lib/python3.9/dist-packages/Epigrass/__pycache__ copying /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/.pybuild/cpython3_3.9/build/Epigrass/__pycache__/epigdal.cpython-39.pyc -> /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/lib/python3.9/dist-packages/Epigrass/__pycache__ byte-compiling /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/lib/python3.9/dist-packages/Epigrass/__init__.py to __init__.cpython-39.pyc byte-compiling /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/lib/python3.9/dist-packages/Epigrass/__version__.py to __version__.cpython-39.pyc byte-compiling /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/lib/python3.9/dist-packages/Epigrass/dataObject.py to dataObject.cpython-39.pyc byte-compiling /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/lib/python3.9/dist-packages/Epigrass/data_io.py to data_io.cpython-39.pyc byte-compiling /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/lib/python3.9/dist-packages/Epigrass/epigdal.py to epigdal.cpython-39.pyc byte-compiling /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/lib/python3.9/dist-packages/Epigrass/epipanel.py to epipanel.cpython-39.pyc byte-compiling /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/lib/python3.9/dist-packages/Epigrass/extract_sites.py to extract_sites.cpython-39.pyc byte-compiling /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/lib/python3.9/dist-packages/Epigrass/manager.py to manager.cpython-39.pyc byte-compiling /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/lib/python3.9/dist-packages/Epigrass/models.py to models.cpython-39.pyc byte-compiling /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/lib/python3.9/dist-packages/Epigrass/report.py to report.cpython-39.pyc byte-compiling /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/lib/python3.9/dist-packages/Epigrass/rinterface.py to rinterface.cpython-39.pyc byte-compiling /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/lib/python3.9/dist-packages/Epigrass/simobj.py to simobj.cpython-39.pyc byte-compiling /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/lib/python3.9/dist-packages/Epigrass/spread.py to spread.cpython-39.pyc running install_data creating /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/share creating /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/share/pixmaps copying egicon.png -> /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/share/pixmaps creating /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/share/doc creating /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/share/doc/epigrass copying docs/build/latex/Epigrass.pdf -> /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/share/doc/epigrass/ creating /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/share/applications copying epigrass.desktop -> /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/share/applications running install_egg_info Copying epigrass.egg-info to /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/lib/python3.9/dist-packages/epigrass-3.0.3.egg-info Skipping SOURCES.txt running install_scripts Installing epirunner script to /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/bin I: pybuild pybuild:311: mv /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass//usr/lib/python3.9/dist-packages/Epigrass/egicon.png /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass/usr/share/pixmaps/epigrass.png; \ ln -s /usr/share/pixmaps/epigrass.png /build/epigrass-VHnZGr/epigrass-3.0.3+dfsg/debian/epigrass//usr/lib/python3.9/dist-packages/Epigrass/egicon.png #PYTHONPATH=debian/epigrass/usr/lib/python3.7/dist-packages/ \ # debian/epigrass/usr/bin/epirunner --help find debian -name "*.desktop" -delete make[1]: Leaving directory '/build/epigrass-VHnZGr/epigrass-3.0.3+dfsg' dh_install -i -O--buildsystem=pybuild debian/rules override_dh_installdocs make[1]: Entering directory '/build/epigrass-VHnZGr/epigrass-3.0.3+dfsg' # no idea why doc is installed in main package as well - just remove this copy dh_installdocs rm debian/epigrass/usr/share/doc/epigrass/Epigrass.pdf* make[1]: Leaving directory '/build/epigrass-VHnZGr/epigrass-3.0.3+dfsg' dh_installchangelogs -i -O--buildsystem=pybuild dh_installman -i -O--buildsystem=pybuild dh_python3 -i -O--buildsystem=pybuild E: dh_python3 dh_python3:176: no package to act on (python3-foo or one with ${python3:Depends} in Depends) dh_installsystemduser -i -O--buildsystem=pybuild dh_perl -i -O--buildsystem=pybuild dh_link -i -O--buildsystem=pybuild dh_strip_nondeterminism -i -O--buildsystem=pybuild dh_compress -i -O--buildsystem=pybuild dh_fixperms -i -O--buildsystem=pybuild dh_missing -i -O--buildsystem=pybuild dh_installdeb -i -O--buildsystem=pybuild dh_gencontrol -i -O--buildsystem=pybuild dh_md5sums -i -O--buildsystem=pybuild dh_builddeb -i -O--buildsystem=pybuild dpkg-deb: building package 'epigrass-doc' in '../epigrass-doc_3.0.3+dfsg-2_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../epigrass_3.0.3+dfsg-2_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/epigrass-VHnZGr /tmp/epigrass-3.0.3+dfsg-2by6f8hrq I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.9TsLRcCGk1... I: success in 5589.8045 seconds md5: epigrass-doc_3.0.3+dfsg-2_all.deb: OK sha1: epigrass-doc_3.0.3+dfsg-2_all.deb: OK sha256: epigrass-doc_3.0.3+dfsg-2_all.deb: OK Checksums: OK