Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/e/elastix/elastix_5.0.1-1_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/elastix-5.0.1-1rsf1bceb/elastix_5.0.1-1_all.buildinfo Get source package info: elastix=5.0.1-1 Source URL: http://snapshot.notset.fr/mr/package/elastix/5.0.1-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.5-1.1 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.52 bash=5.1-5 binutils=2.37-10 binutils-common=2.37-10 binutils-x86-64-linux-gnu=2.37-10 bsdextrautils=2.37.2-4 bsdutils=1:2.37.2-4 build-essential=12.9 bzip2=1.0.8-5 cmake=3.22.0-1 cmake-data=3.22.0-1 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-12 dash=0.5.11+git20210903+057cd650a4ed-3 debconf=1.5.79 debhelper=13.5.2 debianutils=5.5-1 dh-autoreconf=20 dh-elpa-helper=2.0.9 dh-exec=0.23.4 dh-strip-nondeterminism=1.12.1-1 diffutils=1:3.7-5 doxygen=1.9.1-2 dpkg=1.20.9 dpkg-dev=1.20.9 dwz=0.14-1 emacsen-common=3.0.4 file=1:5.41-2 findutils=4.8.0-1 fontconfig=2.13.1-4.2 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 fonts-lmodern=2.004.5-6.1 fonts-urw-base35=20200910-1 g++=4:11.2.0-2 g++-11=11.2.0-12 gcc=4:11.2.0-2 gcc-11=11.2.0-12 gcc-11-base=11.2.0-12 gettext=0.21-4 gettext-base=0.21-4 ghostscript=9.55.0~dfsg-3 graphviz=2.42.2-5+b1 grep=3.7-1 groff-base=1.22.4-7 gzip=1.10-4 hdf5-helpers=1.10.7+repack-4 hostname=3.23 icu-devtools=67.1-7 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libaec-dev=1.0.6-1 libaec0=1.0.6-1 libann0=1.1.2+doc-7 libapache-pom-java=18-1 libarchive-zip-perl=1.68-1 libarchive13=3.4.3-2+b1 libasan6=11.2.0-12 libatomic1=11.2.0-12 libattr1=1:2.5.1-1 libaudit-common=1:3.0.6-1 libaudit1=1:3.0.6-1+b1 libavahi-client3=0.8-5 libavahi-common-data=0.8-5 libavahi-common3=0.8-5 libbinutils=2.37-10 libblkid1=2.37.2-4 libbrotli1=1.0.9-2+b3 libbsd0=0.11.3-1 libbz2-1.0=1.0.8-5 libc-bin=2.32-5 libc-dev-bin=2.32-5 libc6=2.32-5 libc6-dev=2.32-5 libcairo2=1.16.0-5 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcc1-0=11.2.0-12 libcdt5=2.42.2-5+b1 libcgraph6=2.42.2-5+b1 libcharls-dev=2.2.0+dfsg-3 libcharls2=2.2.0+dfsg-3 libclang-cpp11=1:11.1.0-4+b2 libclang1-11=1:11.1.0-4+b2 libcom-err2=1.46.4-1 libcommons-logging-java=1.2-2 libcommons-parent-java=43-1 libcrypt-dev=1:4.4.26-1 libcrypt1=1:4.4.26-1 libctf-nobfd0=2.37-10 libctf0=2.37-10 libcups2=2.3.3op2-7 libcurl3-gnutls=7.79.1-2 libcurl4=7.79.1-2 libcurl4-openssl-dev=7.79.1-2 libdatrie1=0.2.13-2 libdb5.3=5.3.28+dfsg1-0.8 libdbus-1-3=1.12.20-3 libdcmtk-dev=3.6.6-3 libdcmtk16=3.6.6-3 libdebconfclient0=0.261 libdebhelper-perl=13.5.2 libdeflate-dev=1.8-1 libdeflate0=1.8-1 libdouble-conversion-dev=3.1.5-7 libdouble-conversion3=3.1.5-7 libdpkg-perl=1.20.9 libedit2=3.1-20210910-1 libelf1=0.186-1 libexpat1=2.4.1-3 libexpat1-dev=2.4.1-3 libffi8=3.4.2-3 libfftw3-bin=3.3.8-2 libfftw3-dev=3.3.8-2 libfftw3-double3=3.3.8-2 libfftw3-long3=3.3.8-2 libfftw3-quad3=3.3.8-2 libfftw3-single3=3.3.8-2 libfile-stripnondeterminism-perl=1.12.1-1 libfontbox-java=1:1.8.16-2 libfontconfig1=2.13.1-4.2 libfreetype6=2.11.0+dfsg-1 libfribidi0=1.0.8-2 libgcc-11-dev=11.2.0-12 libgcc-s1=11.2.0-12 libgcrypt20=1.9.4-4 libgd3=2.3.0-2 libgdbm-compat4=1.22-1 libgdbm6=1.22-1 libgdcm-dev=3.0.10-1 libgdcm3.0=3.0.10-1 libgfortran5=11.2.0-12 libglib2.0-0=2.70.2-1 libgmp10=2:6.2.1+dfsg-3 libgnutls30=3.7.2-2 libgomp1=11.2.0-12 libgpg-error0=1.42-3 libgraphite2-3=1.3.14-1 libgs9=9.55.0~dfsg-3 libgs9-common=9.55.0~dfsg-3 libgssapi-krb5-2=1.18.3-7 libgts-0.7-5=0.7.6+darcs121130-5 libgvc6=2.42.2-5+b1 libgvpr2=2.42.2-5+b1 libharfbuzz0b=2.7.4-1 libhdf5-103-1=1.10.7+repack-4 libhdf5-cpp-103-1=1.10.7+repack-4 libhdf5-dev=1.10.7+repack-4 libhdf5-fortran-102=1.10.7+repack-4 libhdf5-hl-100=1.10.7+repack-4 libhdf5-hl-cpp-100=1.10.7+repack-4 libhdf5-hl-fortran-100=1.10.7+repack-4 libhogweed6=3.7.3-1 libice6=2:1.0.10-1 libicu-dev=67.1-7 libicu67=67.1-7 libidn12=1.38-4 libidn2-0=2.3.2-2 libijs-0.35=0.35-15 libinsighttoolkit5-dev=5.2.1-1 libinsighttoolkit5.2=5.2.1-1 libisl23=0.24-2 libitm1=11.2.0-12 libjbig-dev=2.1-3.1+b2 libjbig0=2.1-3.1+b2 libjbig2dec0=0.19-3 libjpeg-dev=1:2.1.2-1 libjpeg62-turbo=1:2.1.2-1 libjpeg62-turbo-dev=1:2.1.2-1 libjson-c5=0.15-2 libjsoncpp24=1.9.4-5 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkpathsea6=2021.20210626.59705-1 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 liblab-gamut1=2.42.2-5+b1 liblcms2-2=2.12~rc1-2 libldap-2.4-2=2.4.59+dfsg-1 libllvm11=1:11.1.0-4+b2 liblsan0=11.2.0-12 libltdl7=2.4.6-15 liblz4-1=1.9.3-2 liblzma-dev=5.2.5-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.41-2 libmagic1=1:5.41-2 libmd0=1.0.4-1 libminc-dev=2.4.03-4 libminc2-5.2.0=2.4.03-4 libmount1=2.37.2-4 libmpc3=1.2.1-1 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libncurses6=6.3-1 libncursesw6=6.3-1 libnetcdf-dev=1:4.8.1-1 libnetcdf19=1:4.8.1-1 libnettle8=3.7.3-1 libnghttp2-14=1.43.0-1 libnifti-dev=3.0.1-8 libnifti2-2=3.0.1-8 libnifti2-dev=3.0.1-8 libnifticdf-dev=3.0.1-8 libnifticdf2=3.0.1-8 libniftiio-dev=3.0.1-8 libniftiio2=3.0.1-8 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libopenjp2-7=2.4.0-3 libp11-kit0=0.24.0-6 libpam-modules=1.4.0-10 libpam-modules-bin=1.4.0-10 libpam-runtime=1.4.0-10 libpam0g=1.4.0-10 libpango-1.0-0=1.48.10+ds1-1 libpangocairo-1.0-0=1.48.10+ds1-1 libpangoft2-1.0-0=1.48.10+ds1-1 libpaper-utils=1.1.28+b1 libpaper1=1.1.28+b1 libpathplan4=2.42.2-5+b1 libpcre2-8-0=10.39-3 libpcre3=2:8.39-13 libpdfbox-java=1:1.8.16-2 libperl5.32=5.32.1-6 libpipeline1=1.5.4-1 libpixman-1-0=0.40.0-1 libpng-dev=1.6.37-3 libpng16-16=1.6.37-3 libprocps8=2:3.3.17-5 libpsl5=0.21.0-1.2 libptexenc1=2021.20210626.59705-1 libpython3-stdlib=3.9.8-1 libpython3.9-minimal=3.9.9-1 libpython3.9-stdlib=3.9.9-1 libquadmath0=11.2.0-12 libreadline8=8.1-2 librhash0=1.4.2-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg2-2 libsasl2-modules-db=2.1.27+dfsg2-2 libseccomp2=2.5.3-2 libselinux1=3.3-1+b1 libsigsegv2=2.13-1 libsm6=2:1.2.3-1 libsmartcols1=2.37.2-4 libsocket++1=1.12.13+git20131030.5d039ba-1 libsqlite3-0=3.36.0-2 libssh2-1=1.10.0-2 libssl-dev=1.1.1l-1 libssl1.1=1.1.1l-1 libstdc++-11-dev=11.2.0-12 libstdc++6=11.2.0-12 libsub-override-perl=0.09-2 libsynctex2=2021.20210626.59705-1 libsystemd0=249.7-1 libsz2=1.0.6-1 libtasn1-6=4.18.0-4 libteckit0=2.5.11+ds1-1 libtexlua53=2021.20210626.59705-1 libtexluajit2=2021.20210626.59705-1 libthai-data=0.1.28-4.1 libthai0=0.1.28-4.1 libtiff-dev=4.3.0-2 libtiff5=4.3.0-2 libtiffxx5=4.3.0-2 libtinfo6=6.3-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtsan0=11.2.0-12 libubsan1=11.2.0-12 libuchardet0=0.0.7-1 libudev1=249.7-1 libunistring2=0.9.10-6 libuuid1=2.37.2-4 libuv1=1.42.0-1 libwebp6=0.6.1-2.1 libwrap0=7.6.q-31 libwrap0-dev=7.6.q-31 libx11-6=2:1.7.2-2+b1 libx11-data=2:1.7.2-2 libxapian30=1.4.18-4 libxau6=1:1.0.9-1 libxaw7=2:1.0.13-1.1 libxcb-render0=1.14-3 libxcb-shm0=1.14-3 libxcb1=1.14-3 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.4-1 libxi6=2:1.8-1 libxml2=2.9.12+dfsg-5+b1 libxml2-dev=2.9.12+dfsg-5+b1 libxmu6=2:1.1.2-2+b3 libxpm4=1:3.5.12-1 libxrender1=1:0.9.10-1 libxt6=1:1.2.0-1 libz3-4=4.8.12-1+b1 libznz-dev=3.0.1-8 libznz3=3.0.1-8 libzstd1=1.4.8+dfsg-3 libzzip-0-13=0.13.72+dfsg.1-1.1 linux-libc-dev=5.15.5-1 login=1:4.8.1-2 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-2 mawk=1.3.4.20200120-2 media-types=4.0.0 ncurses-base=6.3-1 ncurses-bin=6.3-1 patch=2.7.6-7 perl=5.32.1-6 perl-base=5.32.1-6 perl-modules-5.32=5.32.1-6 po-debconf=1.0.21+nmu1 poppler-data=0.4.11-1 preview-latex-style=12.2-1 procps=2:3.3.17-5 python3=3.9.8-1 python3-minimal=3.9.8-1 python3.9=3.9.9-1 python3.9-minimal=3.9.9-1 readline-common=8.1-2 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.00-1 t1utils=1.41-4 tar=1.34+dfsg-1 tex-common=6.17 texlive-base=2021.20211127-1 texlive-binaries=2021.20210626.59705-1 texlive-fonts-recommended=2021.20211127-1 texlive-latex-base=2021.20211127-1 texlive-latex-extra=2021.20211127-1 texlive-latex-recommended=2021.20211127-1 texlive-pictures=2021.20211127-1 texlive-publishers=2021.20211127-1 tzdata=2021e-1 ucf=3.0043 util-linux=2.37.2-4 x11-common=1:7.7+23 xdg-utils=1.1.3-4.1 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211206T205922Z/ unstable main deb-src http://snapshot.notset.fr/archive/debian/20211206T205922Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20211205T210857Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d elastix=5.0.1-1 && mkdir -p /build/elastix-TRdtE2 && dpkg-source --no-check -x /*.dsc /build/elastix-TRdtE2/elastix-5.0.1 && chown -R builduser:builduser /build/elastix-TRdtE2" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/elastix-TRdtE2/elastix-5.0.1 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1638784027" dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/elastix-TRdtE2 /tmp/elastix-5.0.1-1rsf1bceb bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20211205T210857Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.8Mb9Cey6VM as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.8Mb9Cey6VM Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-4). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20211205T210857Z unstable/main amd64 libfakeroot amd64 1.26-1 [47.3 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211205T210857Z unstable/main amd64 fakeroot amd64 1.26-1 [87.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1025 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4673 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.26-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.26-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.26-1_amd64.deb ... Unpacking fakeroot (1.26-1) ... Setting up libfakeroot:amd64 (1.26-1) ... Setting up fakeroot (1.26-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.32-5) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211206T205922Z/ unstable main deb-src http://snapshot.notset.fr/archive/debian/20211206T205922Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20211205T210857Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.8Mb9Cey6VM Get:1 http://snapshot.notset.fr/archive/debian/20211206T205922Z unstable InRelease [165 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20211205T210857Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20211206T205922Z unstable/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211206T205922Z unstable/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211206T205922Z unstable/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211206T205922Z unstable/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211206T205922Z unstable/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211206T205922Z unstable/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20211206T205922Z unstable/main Sources [12.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20211206T205922Z unstable/main amd64 Packages [12.0 MB] Fetched 24.6 MB in 21s (1191 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.8Mb9Cey6VM I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d elastix=5.0.1-1 && mkdir -p /build/elastix-TRdtE2 && dpkg-source --no-check -x /*.dsc /build/elastix-TRdtE2/elastix-5.0.1 && chown -R builduser:builduser /build/elastix-TRdtE2"' exec /tmp/mmdebstrap.8Mb9Cey6VM Reading package lists... NOTICE: 'elastix' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/elastix.git Please use: git clone https://salsa.debian.org/med-team/elastix.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 20.6 MB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20211206T205922Z unstable/main elastix 5.0.1-1 (dsc) [2297 B] Get:2 http://snapshot.notset.fr/archive/debian/20211206T205922Z unstable/main elastix 5.0.1-1 (tar) [20.6 MB] Get:3 http://snapshot.notset.fr/archive/debian/20211206T205922Z unstable/main elastix 5.0.1-1 (diff) [10.3 kB] Fetched 20.6 MB in 18s (1126 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'elastix_5.0.1-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting elastix in /build/elastix-TRdtE2/elastix-5.0.1 dpkg-source: info: unpacking elastix_5.0.1.orig.tar.gz dpkg-source: info: unpacking elastix_5.0.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying doxygen_cleanup.patch dpkg-source: info: applying no_include_install.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/elastix-TRdtE2/elastix-5.0.1 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1638784027" dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.8Mb9Cey6VM dpkg-buildpackage: info: source package elastix dpkg-buildpackage: info: source version 5.0.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . debian/rules clean dh clean dh_clean debian/rules binary-indep dh binary-indep dh_update_autotools_config -i dh_autoreconf -i debian/rules override_dh_auto_configure make[1]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1' dh_auto_configure -- -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=RELEASE -DCMAKE_SKIP_RPATH=ON -DSOURCE_DATE_EPOCH=OURCE_DATE_EPOCH -DBUILD_DOCUMENTATION=ON -DELASTIX_USE_MEVISDICOMTIFF:BOOL=OFF -DUSE_KNNGraphAlphaMutualInformationMetric:BOOL=ON cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=RELEASE -DCMAKE_SKIP_RPATH=ON -DSOURCE_DATE_EPOCH=OURCE_DATE_EPOCH -DBUILD_DOCUMENTATION=ON -DELASTIX_USE_MEVISDICOMTIFF:BOOL=OFF -DUSE_KNNGraphAlphaMutualInformationMetric:BOOL=ON .. -- The C compiler identification is GNU 11.2.0 -- The CXX compiler identification is GNU 11.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- The imported target "vtkgdcm" references the file "/usr/lib/x86_64-linux-gnu/libvtkgdcm.so.3.0.10" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "vtkgdcmsharpglue" references the file "/usr/lib/cli/vtkgdcm-sharp-3.0/libvtkgdcmsharpglue.so" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "vtkgdcmJava" references the file "/usr/lib/x86_64-linux-gnu/jni/libvtkgdcmJava.so" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "vtkgdcmPython" references the file "/usr/lib/python3/dist-packages/vtkgdcmPython.cpython-39-x86_64-linux-gnu.so" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "vtkgdcmPythonD" references the file "/usr/lib/x86_64-linux-gnu/libvtkgdcmPythonD.so.3.0.10" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmdump" references the file "/usr/bin/gdcmdump" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmdiff" references the file "/usr/bin/gdcmdiff" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmraw" references the file "/usr/bin/gdcmraw" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmscanner" references the file "/usr/bin/gdcmscanner" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmanon" references the file "/usr/bin/gdcmanon" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmgendir" references the file "/usr/bin/gdcmgendir" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmimg" references the file "/usr/bin/gdcmimg" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmconv" references the file "/usr/bin/gdcmconv" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmtar" references the file "/usr/bin/gdcmtar" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcminfo" references the file "/usr/bin/gdcminfo" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmscu" references the file "/usr/bin/gdcmscu" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmxml" references the file "/usr/bin/gdcmxml" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmpap3" references the file "/usr/bin/gdcmpap3" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmpdf" references the file "/usr/bin/gdcmpdf" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.7") found components: CXX C -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success CMake Warning at Testing/CMakeLists.txt:41 (message): WARNING: python not found! Some test results can not be evaluated. -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1' dh_auto_build -i cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/elastix-TRdtE2/elastix-5.0.1 -B/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/CMakeFiles /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Common/CMakeFiles/elxCommon.dir/build.make Common/CMakeFiles/elxCommon.dir/depend make -f Common/ParameterFileParser/CMakeFiles/param.dir/build.make Common/ParameterFileParser/CMakeFiles/param.dir/depend make -f Common/xout/CMakeFiles/xoutlib.dir/build.make Common/xout/CMakeFiles/xoutlib.dir/depend make -f Common/MevisDicomTiff/CMakeFiles/mevisdcmtiff.dir/build.make Common/MevisDicomTiff/CMakeFiles/mevisdcmtiff.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Common /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Common /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Common/CMakeFiles/elxCommon.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Common/ParameterFileParser /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Common/ParameterFileParser/CMakeFiles/param.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Common/xout /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Common/xout /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Common/xout/CMakeFiles/xoutlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Common/MevisDicomTiff /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Common/MevisDicomTiff/CMakeFiles/mevisdcmtiff.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Common/ParameterFileParser/CMakeFiles/param.dir/build.make Common/ParameterFileParser/CMakeFiles/param.dir/build make -f Common/CMakeFiles/elxCommon.dir/build.make Common/CMakeFiles/elxCommon.dir/build make -f Common/xout/CMakeFiles/xoutlib.dir/build.make Common/xout/CMakeFiles/xoutlib.dir/build make -f Common/MevisDicomTiff/CMakeFiles/mevisdcmtiff.dir/build.make Common/MevisDicomTiff/CMakeFiles/mevisdcmtiff.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 1%] Building CXX object Common/ParameterFileParser/CMakeFiles/param.dir/itkParameterFileParser.cxx.o [ 2%] Building CXX object Common/CMakeFiles/elxCommon.dir/itkScaledSingleValuedNonLinearOptimizer.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Common/ParameterFileParser && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Common/ParameterFileParser/CMakeFiles/param.dir/itkParameterFileParser.cxx.o -MF CMakeFiles/param.dir/itkParameterFileParser.cxx.o.d -o CMakeFiles/param.dir/itkParameterFileParser.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser/itkParameterFileParser.cxx cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Common && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Common/CMakeFiles/elxCommon.dir/itkScaledSingleValuedNonLinearOptimizer.cxx.o -MF CMakeFiles/elxCommon.dir/itkScaledSingleValuedNonLinearOptimizer.cxx.o.d -o CMakeFiles/elxCommon.dir/itkScaledSingleValuedNonLinearOptimizer.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Common/itkScaledSingleValuedNonLinearOptimizer.cxx [ 2%] Building CXX object Common/xout/CMakeFiles/xoutlib.dir/xoutmain.cxx.o [ 3%] Building CXX object Common/MevisDicomTiff/CMakeFiles/mevisdcmtiff.dir/itkUseMevisDicomTiff.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Common/xout && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Common/xout/CMakeFiles/xoutlib.dir/xoutmain.cxx.o -MF CMakeFiles/xoutlib.dir/xoutmain.cxx.o.d -o CMakeFiles/xoutlib.dir/xoutmain.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Common/xout/xoutmain.cxx cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Common/MevisDicomTiff && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Common/MevisDicomTiff/CMakeFiles/mevisdcmtiff.dir/itkUseMevisDicomTiff.cxx.o -MF CMakeFiles/mevisdcmtiff.dir/itkUseMevisDicomTiff.cxx.o.d -o CMakeFiles/mevisdcmtiff.dir/itkUseMevisDicomTiff.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff/itkUseMevisDicomTiff.cxx [ 3%] Linking CXX static library ../../bin/libmevisdcmtiff-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Common/MevisDicomTiff && /usr/bin/cmake -P CMakeFiles/mevisdcmtiff.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Common/MevisDicomTiff && /usr/bin/cmake -E cmake_link_script CMakeFiles/mevisdcmtiff.dir/link.txt --verbose=1 /usr/bin/ar qc ../../bin/libmevisdcmtiff-5.0.a CMakeFiles/mevisdcmtiff.dir/itkUseMevisDicomTiff.cxx.o /usr/bin/ranlib ../../bin/libmevisdcmtiff-5.0.a make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 4%] Linking CXX static library ../../bin/libxoutlib-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Common/xout && /usr/bin/cmake -P CMakeFiles/xoutlib.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Common/xout && /usr/bin/cmake -E cmake_link_script CMakeFiles/xoutlib.dir/link.txt --verbose=1 /usr/bin/ar qc ../../bin/libxoutlib-5.0.a CMakeFiles/xoutlib.dir/xoutmain.cxx.o [ 4%] Built target mevisdcmtiff make -f Components/Metrics/KNNGraphAlphaMutualInformation/KNN/ann_1.1/CMakeFiles/ANNlib.dir/build.make Components/Metrics/KNNGraphAlphaMutualInformation/KNN/ann_1.1/CMakeFiles/ANNlib.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/ann_1.1 /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/ann_1.1 /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/ann_1.1/CMakeFiles/ANNlib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Metrics/KNNGraphAlphaMutualInformation/KNN/ann_1.1/CMakeFiles/ANNlib.dir/build.make Components/Metrics/KNNGraphAlphaMutualInformation/KNN/ann_1.1/CMakeFiles/ANNlib.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 4%] Building CXX object Components/Metrics/KNNGraphAlphaMutualInformation/KNN/ann_1.1/CMakeFiles/ANNlib.dir/src/ANN.cpp.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/ann_1.1 && /usr/bin/c++ -DANNlib_EXPORTS -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/ann_1.1/include -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/ann_1.1/src -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT Components/Metrics/KNNGraphAlphaMutualInformation/KNN/ann_1.1/CMakeFiles/ANNlib.dir/src/ANN.cpp.o -MF CMakeFiles/ANNlib.dir/src/ANN.cpp.o.d -o CMakeFiles/ANNlib.dir/src/ANN.cpp.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/ann_1.1/src/ANN.cpp /usr/bin/ranlib ../../bin/libxoutlib-5.0.a make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 4%] Built target xoutlib make -f Testing/CMakeFiles/elxComputeOverlap.dir/build.make Testing/CMakeFiles/elxComputeOverlap.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Testing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing/CMakeFiles/elxComputeOverlap.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Testing/CMakeFiles/elxComputeOverlap.dir/build.make Testing/CMakeFiles/elxComputeOverlap.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 5%] Building CXX object Testing/CMakeFiles/elxComputeOverlap.dir/elxComputeOverlap.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel 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Components/Metrics/KNNGraphAlphaMutualInformation/KNN/ann_1.1/CMakeFiles/ANNlib.dir/src/bd_fix_rad_search.cpp.o -MF CMakeFiles/ANNlib.dir/src/bd_fix_rad_search.cpp.o.d -o CMakeFiles/ANNlib.dir/src/bd_fix_rad_search.cpp.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/ann_1.1/src/bd_fix_rad_search.cpp [ 5%] Building CXX object Common/CMakeFiles/elxCommon.dir/CostFunctions/itkScaledSingleValuedCostFunction.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Common && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser 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-I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/ann_1.1/src -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT Components/Metrics/KNNGraphAlphaMutualInformation/KNN/ann_1.1/CMakeFiles/ANNlib.dir/src/bd_tree.cpp.o -MF CMakeFiles/ANNlib.dir/src/bd_tree.cpp.o.d -o CMakeFiles/ANNlib.dir/src/bd_tree.cpp.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/ann_1.1/src/bd_tree.cpp [ 6%] Building CXX object Common/CMakeFiles/elxCommon.dir/LineSearchOptimizers/itkMoreThuenteLineSearchOptimizer.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Common && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration 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[ 9%] Linking CXX static library ../bin/libelxCommon-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Common && /usr/bin/cmake -P CMakeFiles/elxCommon.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Common && /usr/bin/cmake -E cmake_link_script CMakeFiles/elxCommon.dir/link.txt --verbose=1 /usr/bin/ar qc ../bin/libelxCommon-5.0.a CMakeFiles/elxCommon.dir/itkScaledSingleValuedNonLinearOptimizer.cxx.o CMakeFiles/elxCommon.dir/CostFunctions/itkScaledSingleValuedCostFunction.cxx.o CMakeFiles/elxCommon.dir/LineSearchOptimizers/itkMoreThuenteLineSearchOptimizer.cxx.o CMakeFiles/elxCommon.dir/LineSearchOptimizers/itkLineSearchOptimizer.cxx.o make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 9%] Built target param make -f Testing/CMakeFiles/elxImageCompare.dir/build.make Testing/CMakeFiles/elxImageCompare.dir/depend make[3]: Entering directory 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-I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/ann_1.1/include -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/ann_1.1/src -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT Components/Metrics/KNNGraphAlphaMutualInformation/KNN/ann_1.1/CMakeFiles/ANNlib.dir/src/kd_tree.cpp.o -MF CMakeFiles/ANNlib.dir/src/kd_tree.cpp.o.d -o CMakeFiles/ANNlib.dir/src/kd_tree.cpp.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/ann_1.1/src/kd_tree.cpp make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 11%] Building CXX object Components/Metrics/KNNGraphAlphaMutualInformation/KNN/ann_1.1/CMakeFiles/ANNlib.dir/src/kd_util.cpp.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/ann_1.1 && /usr/bin/c++ -DANNlib_EXPORTS -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/ann_1.1/include -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/ann_1.1/src -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT Components/Metrics/KNNGraphAlphaMutualInformation/KNN/ann_1.1/CMakeFiles/ANNlib.dir/src/kd_util.cpp.o -MF CMakeFiles/ANNlib.dir/src/kd_util.cpp.o.d -o CMakeFiles/ANNlib.dir/src/kd_util.cpp.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/ann_1.1/src/kd_util.cpp [ 11%] Built target elxCommon make -f Testing/CMakeFiles/elxTransformParametersCompare.dir/build.make Testing/CMakeFiles/elxTransformParametersCompare.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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-I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/ann_1.1/include -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/ann_1.1/src -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -fPIC -std=gnu++11 -MD -MT Components/Metrics/KNNGraphAlphaMutualInformation/KNN/ann_1.1/CMakeFiles/ANNlib.dir/src/perf.cpp.o -MF CMakeFiles/ANNlib.dir/src/perf.cpp.o.d -o CMakeFiles/ANNlib.dir/src/perf.cpp.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/ann_1.1/src/perf.cpp [ 12%] Linking CXX shared library ../../../../../bin/libANNlib-5.0.so cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/ann_1.1 && /usr/bin/cmake -E cmake_link_script CMakeFiles/ANNlib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -lniftiio -shared -Wl,-soname,libANNlib-5.0.so.1 -o ../../../../../bin/libANNlib-5.0.so.1 CMakeFiles/ANNlib.dir/src/ANN.cpp.o CMakeFiles/ANNlib.dir/src/bd_fix_rad_search.cpp.o CMakeFiles/ANNlib.dir/src/bd_pr_search.cpp.o CMakeFiles/ANNlib.dir/src/bd_search.cpp.o CMakeFiles/ANNlib.dir/src/bd_tree.cpp.o CMakeFiles/ANNlib.dir/src/brute.cpp.o CMakeFiles/ANNlib.dir/src/kd_dump.cpp.o CMakeFiles/ANNlib.dir/src/kd_fix_rad_search.cpp.o CMakeFiles/ANNlib.dir/src/kd_pr_search.cpp.o CMakeFiles/ANNlib.dir/src/kd_search.cpp.o CMakeFiles/ANNlib.dir/src/kd_split.cpp.o CMakeFiles/ANNlib.dir/src/kd_tree.cpp.o CMakeFiles/ANNlib.dir/src/kd_util.cpp.o CMakeFiles/ANNlib.dir/src/perf.cpp.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/ann_1.1 && /usr/bin/cmake -E cmake_symlink_library ../../../../../bin/libANNlib-5.0.so.1 ../../../../../bin/libANNlib-5.0.so.1 ../../../../../bin/libANNlib-5.0.so make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 12%] Built target ANNlib make -f Testing/CMakeFiles/elxInvertTransform.dir/build.make Testing/CMakeFiles/elxInvertTransform.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Testing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing/CMakeFiles/elxInvertTransform.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Testing/CMakeFiles/elxInvertTransform.dir/build.make Testing/CMakeFiles/elxInvertTransform.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 12%] Building CXX object Testing/CMakeFiles/elxInvertTransform.dir/elxInvertTransform.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Testing/CMakeFiles/elxInvertTransform.dir/elxInvertTransform.cxx.o -MF CMakeFiles/elxInvertTransform.dir/elxInvertTransform.cxx.o.d -o CMakeFiles/elxInvertTransform.dir/elxInvertTransform.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Testing/elxInvertTransform.cxx [ 12%] Building CXX object Testing/CMakeFiles/elxComputeOverlap.dir/itkCommandLineArgumentParser.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Testing/CMakeFiles/elxComputeOverlap.dir/itkCommandLineArgumentParser.cxx.o -MF CMakeFiles/elxComputeOverlap.dir/itkCommandLineArgumentParser.cxx.o.d -o CMakeFiles/elxComputeOverlap.dir/itkCommandLineArgumentParser.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Testing/itkCommandLineArgumentParser.cxx [ 12%] Linking CXX executable ../bin/elxComputeOverlap cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/cmake -E cmake_link_script CMakeFiles/elxComputeOverlap.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -lniftiio CMakeFiles/elxComputeOverlap.dir/elxComputeOverlap.cxx.o CMakeFiles/elxComputeOverlap.dir/itkCommandLineArgumentParser.cxx.o -o ../bin/elxComputeOverlap /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 -lcharls /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm -lm -ldl -lrt /usr/lib/x86_64-linux-gnu/libnetcdf.so /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libxml2.so /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libwrap.so /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -lpthread -ldl -lm make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 12%] Built target elxComputeOverlap make -f Testing/CMakeFiles/itkAdvancedBSplineDeformableTransformTest.dir/build.make Testing/CMakeFiles/itkAdvancedBSplineDeformableTransformTest.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Testing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing/CMakeFiles/itkAdvancedBSplineDeformableTransformTest.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Testing/CMakeFiles/itkAdvancedBSplineDeformableTransformTest.dir/build.make Testing/CMakeFiles/itkAdvancedBSplineDeformableTransformTest.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 13%] Building CXX object Testing/CMakeFiles/elxImageCompare.dir/itkCommandLineArgumentParser.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Testing/CMakeFiles/elxImageCompare.dir/itkCommandLineArgumentParser.cxx.o -MF CMakeFiles/elxImageCompare.dir/itkCommandLineArgumentParser.cxx.o.d -o CMakeFiles/elxImageCompare.dir/itkCommandLineArgumentParser.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Testing/itkCommandLineArgumentParser.cxx [ 13%] Building CXX object Testing/CMakeFiles/itkAdvancedBSplineDeformableTransformTest.dir/itkAdvancedBSplineDeformableTransformTest.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Testing/CMakeFiles/itkAdvancedBSplineDeformableTransformTest.dir/itkAdvancedBSplineDeformableTransformTest.cxx.o -MF CMakeFiles/itkAdvancedBSplineDeformableTransformTest.dir/itkAdvancedBSplineDeformableTransformTest.cxx.o.d -o CMakeFiles/itkAdvancedBSplineDeformableTransformTest.dir/itkAdvancedBSplineDeformableTransformTest.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Testing/itkAdvancedBSplineDeformableTransformTest.cxx [ 13%] Linking CXX executable ../bin/elxImageCompare cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/cmake -E cmake_link_script CMakeFiles/elxImageCompare.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -lniftiio CMakeFiles/elxImageCompare.dir/elxImageCompare.cxx.o CMakeFiles/elxImageCompare.dir/itkCommandLineArgumentParser.cxx.o -o ../bin/elxImageCompare /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 -lcharls /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm -lm -ldl -lrt /usr/lib/x86_64-linux-gnu/libnetcdf.so /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libxml2.so /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libwrap.so /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -lpthread -ldl -lm [ 13%] Building CXX object Testing/CMakeFiles/elxTransformParametersCompare.dir/itkCommandLineArgumentParser.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Testing/CMakeFiles/elxTransformParametersCompare.dir/itkCommandLineArgumentParser.cxx.o -MF CMakeFiles/elxTransformParametersCompare.dir/itkCommandLineArgumentParser.cxx.o.d -o CMakeFiles/elxTransformParametersCompare.dir/itkCommandLineArgumentParser.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Testing/itkCommandLineArgumentParser.cxx make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 13%] Built target elxImageCompare make -f Testing/CMakeFiles/itkAdvancedRecursiveBSplineTransformTest.dir/build.make Testing/CMakeFiles/itkAdvancedRecursiveBSplineTransformTest.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Testing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing/CMakeFiles/itkAdvancedRecursiveBSplineTransformTest.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Testing/CMakeFiles/itkAdvancedRecursiveBSplineTransformTest.dir/build.make Testing/CMakeFiles/itkAdvancedRecursiveBSplineTransformTest.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 13%] Building CXX object Testing/CMakeFiles/itkAdvancedRecursiveBSplineTransformTest.dir/itkAdvancedRecursiveBSplineTransformTest.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Testing/CMakeFiles/itkAdvancedRecursiveBSplineTransformTest.dir/itkAdvancedRecursiveBSplineTransformTest.cxx.o -MF CMakeFiles/itkAdvancedRecursiveBSplineTransformTest.dir/itkAdvancedRecursiveBSplineTransformTest.cxx.o.d -o CMakeFiles/itkAdvancedRecursiveBSplineTransformTest.dir/itkAdvancedRecursiveBSplineTransformTest.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Testing/itkAdvancedRecursiveBSplineTransformTest.cxx [ 13%] Linking CXX executable ../bin/elxTransformParametersCompare cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/cmake -E cmake_link_script CMakeFiles/elxTransformParametersCompare.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -lniftiio CMakeFiles/elxTransformParametersCompare.dir/elxTransformParametersCompare.cxx.o CMakeFiles/elxTransformParametersCompare.dir/itkCommandLineArgumentParser.cxx.o -o ../bin/elxTransformParametersCompare ../bin/libparam-5.0.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 -lcharls /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm -lm -ldl -lrt /usr/lib/x86_64-linux-gnu/libnetcdf.so /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libxml2.so /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libwrap.so /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -lpthread -ldl -lm make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 13%] Built target elxTransformParametersCompare make -f Testing/CMakeFiles/itkAdvancedLinearInterpolatorTest.dir/build.make Testing/CMakeFiles/itkAdvancedLinearInterpolatorTest.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Testing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing/CMakeFiles/itkAdvancedLinearInterpolatorTest.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Testing/CMakeFiles/itkAdvancedLinearInterpolatorTest.dir/build.make Testing/CMakeFiles/itkAdvancedLinearInterpolatorTest.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 13%] Building CXX object Testing/CMakeFiles/itkAdvancedLinearInterpolatorTest.dir/itkAdvancedLinearInterpolatorTest.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Testing/CMakeFiles/itkAdvancedLinearInterpolatorTest.dir/itkAdvancedLinearInterpolatorTest.cxx.o -MF CMakeFiles/itkAdvancedLinearInterpolatorTest.dir/itkAdvancedLinearInterpolatorTest.cxx.o.d -o CMakeFiles/itkAdvancedLinearInterpolatorTest.dir/itkAdvancedLinearInterpolatorTest.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Testing/itkAdvancedLinearInterpolatorTest.cxx [ 14%] Building CXX object Testing/CMakeFiles/elxInvertTransform.dir/itkCommandLineArgumentParser.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Testing/CMakeFiles/elxInvertTransform.dir/itkCommandLineArgumentParser.cxx.o -MF CMakeFiles/elxInvertTransform.dir/itkCommandLineArgumentParser.cxx.o.d -o CMakeFiles/elxInvertTransform.dir/itkCommandLineArgumentParser.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Testing/itkCommandLineArgumentParser.cxx [ 14%] Linking CXX executable ../bin/elxInvertTransform cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/cmake -E cmake_link_script CMakeFiles/elxInvertTransform.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -lniftiio CMakeFiles/elxInvertTransform.dir/elxInvertTransform.cxx.o CMakeFiles/elxInvertTransform.dir/itkCommandLineArgumentParser.cxx.o -o ../bin/elxInvertTransform ../bin/libparam-5.0.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 -lcharls /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm -lm -ldl -lrt /usr/lib/x86_64-linux-gnu/libnetcdf.so /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libxml2.so /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libwrap.so /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -lpthread -ldl -lm make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 14%] Built target elxInvertTransform make -f Testing/CMakeFiles/itkBSplineDerivativeKernelFunctionTest.dir/build.make Testing/CMakeFiles/itkBSplineDerivativeKernelFunctionTest.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Testing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing/CMakeFiles/itkBSplineDerivativeKernelFunctionTest.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Testing/CMakeFiles/itkBSplineDerivativeKernelFunctionTest.dir/build.make Testing/CMakeFiles/itkBSplineDerivativeKernelFunctionTest.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 15%] Building CXX object Testing/CMakeFiles/itkBSplineDerivativeKernelFunctionTest.dir/itkBSplineDerivativeKernelFunctionTest.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Testing/CMakeFiles/itkBSplineDerivativeKernelFunctionTest.dir/itkBSplineDerivativeKernelFunctionTest.cxx.o -MF CMakeFiles/itkBSplineDerivativeKernelFunctionTest.dir/itkBSplineDerivativeKernelFunctionTest.cxx.o.d -o CMakeFiles/itkBSplineDerivativeKernelFunctionTest.dir/itkBSplineDerivativeKernelFunctionTest.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Testing/itkBSplineDerivativeKernelFunctionTest.cxx [ 15%] Building CXX object Testing/CMakeFiles/itkAdvancedBSplineDeformableTransformTest.dir/itkCommandLineArgumentParser.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Testing/CMakeFiles/itkAdvancedBSplineDeformableTransformTest.dir/itkCommandLineArgumentParser.cxx.o -MF CMakeFiles/itkAdvancedBSplineDeformableTransformTest.dir/itkCommandLineArgumentParser.cxx.o.d -o CMakeFiles/itkAdvancedBSplineDeformableTransformTest.dir/itkCommandLineArgumentParser.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Testing/itkCommandLineArgumentParser.cxx [ 15%] Building CXX object Testing/CMakeFiles/itkBSplineDerivativeKernelFunctionTest.dir/itkCommandLineArgumentParser.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Testing/CMakeFiles/itkBSplineDerivativeKernelFunctionTest.dir/itkCommandLineArgumentParser.cxx.o -MF CMakeFiles/itkBSplineDerivativeKernelFunctionTest.dir/itkCommandLineArgumentParser.cxx.o.d -o CMakeFiles/itkBSplineDerivativeKernelFunctionTest.dir/itkCommandLineArgumentParser.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Testing/itkCommandLineArgumentParser.cxx [ 16%] Linking CXX executable ../bin/itkAdvancedBSplineDeformableTransformTest cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/cmake -E cmake_link_script CMakeFiles/itkAdvancedBSplineDeformableTransformTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -lniftiio CMakeFiles/itkAdvancedBSplineDeformableTransformTest.dir/itkAdvancedBSplineDeformableTransformTest.cxx.o CMakeFiles/itkAdvancedBSplineDeformableTransformTest.dir/itkCommandLineArgumentParser.cxx.o -o ../bin/itkAdvancedBSplineDeformableTransformTest ../bin/libparam-5.0.a ../bin/libmevisdcmtiff-5.0.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 -lcharls /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm -lm -ldl -lrt /usr/lib/x86_64-linux-gnu/libnetcdf.so /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libxml2.so /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libwrap.so /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -lpthread -ldl -lm [ 16%] Linking CXX executable ../bin/itkBSplineDerivativeKernelFunctionTest cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/cmake -E cmake_link_script CMakeFiles/itkBSplineDerivativeKernelFunctionTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -lniftiio CMakeFiles/itkBSplineDerivativeKernelFunctionTest.dir/itkBSplineDerivativeKernelFunctionTest.cxx.o CMakeFiles/itkBSplineDerivativeKernelFunctionTest.dir/itkCommandLineArgumentParser.cxx.o -o ../bin/itkBSplineDerivativeKernelFunctionTest ../bin/libparam-5.0.a ../bin/libmevisdcmtiff-5.0.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 -lcharls /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm -lm -ldl -lrt /usr/lib/x86_64-linux-gnu/libnetcdf.so /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libxml2.so /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libwrap.so /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -lpthread -ldl -lm make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 16%] Built target itkBSplineDerivativeKernelFunctionTest [ 17%] Building CXX object Testing/CMakeFiles/itkAdvancedLinearInterpolatorTest.dir/itkCommandLineArgumentParser.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Testing/CMakeFiles/itkAdvancedLinearInterpolatorTest.dir/itkCommandLineArgumentParser.cxx.o -MF CMakeFiles/itkAdvancedLinearInterpolatorTest.dir/itkCommandLineArgumentParser.cxx.o.d -o CMakeFiles/itkAdvancedLinearInterpolatorTest.dir/itkCommandLineArgumentParser.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Testing/itkCommandLineArgumentParser.cxx make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 17%] Built target itkAdvancedBSplineDeformableTransformTest make -f Testing/CMakeFiles/itkBSplineSODerivativeKernelFunctionTest.dir/build.make Testing/CMakeFiles/itkBSplineSODerivativeKernelFunctionTest.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Testing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing/CMakeFiles/itkBSplineSODerivativeKernelFunctionTest.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Testing/CMakeFiles/itkBSplineSODerivativeKernelFunctionTest.dir/build.make Testing/CMakeFiles/itkBSplineSODerivativeKernelFunctionTest.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 18%] Building CXX object Testing/CMakeFiles/itkBSplineSODerivativeKernelFunctionTest.dir/itkBSplineSODerivativeKernelFunctionTest.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Testing/CMakeFiles/itkBSplineSODerivativeKernelFunctionTest.dir/itkBSplineSODerivativeKernelFunctionTest.cxx.o -MF CMakeFiles/itkBSplineSODerivativeKernelFunctionTest.dir/itkBSplineSODerivativeKernelFunctionTest.cxx.o.d -o CMakeFiles/itkBSplineSODerivativeKernelFunctionTest.dir/itkBSplineSODerivativeKernelFunctionTest.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Testing/itkBSplineSODerivativeKernelFunctionTest.cxx make -f Testing/CMakeFiles/itkBSplineInterpolationWeightFunctionTest.dir/build.make Testing/CMakeFiles/itkBSplineInterpolationWeightFunctionTest.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Testing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing/CMakeFiles/itkBSplineInterpolationWeightFunctionTest.dir/DependInfo.cmake --color= [ 18%] Building CXX object Testing/CMakeFiles/itkBSplineSODerivativeKernelFunctionTest.dir/itkCommandLineArgumentParser.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Testing/CMakeFiles/itkBSplineSODerivativeKernelFunctionTest.dir/itkCommandLineArgumentParser.cxx.o -MF CMakeFiles/itkBSplineSODerivativeKernelFunctionTest.dir/itkCommandLineArgumentParser.cxx.o.d -o CMakeFiles/itkBSplineSODerivativeKernelFunctionTest.dir/itkCommandLineArgumentParser.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Testing/itkCommandLineArgumentParser.cxx make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Testing/CMakeFiles/itkBSplineInterpolationWeightFunctionTest.dir/build.make Testing/CMakeFiles/itkBSplineInterpolationWeightFunctionTest.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 18%] Building CXX object Testing/CMakeFiles/itkBSplineInterpolationWeightFunctionTest.dir/itkBSplineInterpolationWeightFunctionTest.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Testing/CMakeFiles/itkBSplineInterpolationWeightFunctionTest.dir/itkBSplineInterpolationWeightFunctionTest.cxx.o -MF CMakeFiles/itkBSplineInterpolationWeightFunctionTest.dir/itkBSplineInterpolationWeightFunctionTest.cxx.o.d -o CMakeFiles/itkBSplineInterpolationWeightFunctionTest.dir/itkBSplineInterpolationWeightFunctionTest.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Testing/itkBSplineInterpolationWeightFunctionTest.cxx [ 18%] Linking CXX executable ../bin/itkAdvancedLinearInterpolatorTest cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/cmake -E cmake_link_script CMakeFiles/itkAdvancedLinearInterpolatorTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -lniftiio CMakeFiles/itkAdvancedLinearInterpolatorTest.dir/itkAdvancedLinearInterpolatorTest.cxx.o CMakeFiles/itkAdvancedLinearInterpolatorTest.dir/itkCommandLineArgumentParser.cxx.o -o ../bin/itkAdvancedLinearInterpolatorTest ../bin/libparam-5.0.a ../bin/libmevisdcmtiff-5.0.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 -lcharls /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm -lm -ldl -lrt /usr/lib/x86_64-linux-gnu/libnetcdf.so /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libxml2.so /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libwrap.so /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -lpthread -ldl -lm [ 18%] Linking CXX executable ../bin/itkBSplineSODerivativeKernelFunctionTest cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/cmake -E cmake_link_script CMakeFiles/itkBSplineSODerivativeKernelFunctionTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -lniftiio CMakeFiles/itkBSplineSODerivativeKernelFunctionTest.dir/itkBSplineSODerivativeKernelFunctionTest.cxx.o CMakeFiles/itkBSplineSODerivativeKernelFunctionTest.dir/itkCommandLineArgumentParser.cxx.o -o ../bin/itkBSplineSODerivativeKernelFunctionTest ../bin/libparam-5.0.a ../bin/libmevisdcmtiff-5.0.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 -lcharls /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm -lm -ldl -lrt /usr/lib/x86_64-linux-gnu/libnetcdf.so /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libxml2.so /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libwrap.so /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -lpthread -ldl -lm make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 18%] Built target itkBSplineSODerivativeKernelFunctionTest make -f Testing/CMakeFiles/itkBSplineInterpolationDerivativeWeightFunctionTest.dir/build.make Testing/CMakeFiles/itkBSplineInterpolationDerivativeWeightFunctionTest.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Testing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing/CMakeFiles/itkBSplineInterpolationDerivativeWeightFunctionTest.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Testing/CMakeFiles/itkBSplineInterpolationDerivativeWeightFunctionTest.dir/build.make Testing/CMakeFiles/itkBSplineInterpolationDerivativeWeightFunctionTest.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 19%] Building CXX object Testing/CMakeFiles/itkBSplineInterpolationDerivativeWeightFunctionTest.dir/itkBSplineInterpolationDerivativeWeightFunctionTest.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Testing/CMakeFiles/itkBSplineInterpolationDerivativeWeightFunctionTest.dir/itkBSplineInterpolationDerivativeWeightFunctionTest.cxx.o -MF CMakeFiles/itkBSplineInterpolationDerivativeWeightFunctionTest.dir/itkBSplineInterpolationDerivativeWeightFunctionTest.cxx.o.d -o CMakeFiles/itkBSplineInterpolationDerivativeWeightFunctionTest.dir/itkBSplineInterpolationDerivativeWeightFunctionTest.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Testing/itkBSplineInterpolationDerivativeWeightFunctionTest.cxx make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 19%] Built target itkAdvancedLinearInterpolatorTest make -f Testing/CMakeFiles/itkBSplineInterpolationSODerivativeWeightFunctionTest.dir/build.make Testing/CMakeFiles/itkBSplineInterpolationSODerivativeWeightFunctionTest.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Testing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing/CMakeFiles/itkBSplineInterpolationSODerivativeWeightFunctionTest.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Testing/CMakeFiles/itkBSplineInterpolationSODerivativeWeightFunctionTest.dir/build.make Testing/CMakeFiles/itkBSplineInterpolationSODerivativeWeightFunctionTest.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 19%] Building CXX object Testing/CMakeFiles/itkBSplineInterpolationSODerivativeWeightFunctionTest.dir/itkBSplineInterpolationSODerivativeWeightFunctionTest.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Testing/CMakeFiles/itkBSplineInterpolationSODerivativeWeightFunctionTest.dir/itkBSplineInterpolationSODerivativeWeightFunctionTest.cxx.o -MF CMakeFiles/itkBSplineInterpolationSODerivativeWeightFunctionTest.dir/itkBSplineInterpolationSODerivativeWeightFunctionTest.cxx.o.d -o CMakeFiles/itkBSplineInterpolationSODerivativeWeightFunctionTest.dir/itkBSplineInterpolationSODerivativeWeightFunctionTest.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Testing/itkBSplineInterpolationSODerivativeWeightFunctionTest.cxx [ 20%] Building CXX object Testing/CMakeFiles/itkBSplineInterpolationWeightFunctionTest.dir/itkCommandLineArgumentParser.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Testing/CMakeFiles/itkBSplineInterpolationWeightFunctionTest.dir/itkCommandLineArgumentParser.cxx.o -MF CMakeFiles/itkBSplineInterpolationWeightFunctionTest.dir/itkCommandLineArgumentParser.cxx.o.d -o CMakeFiles/itkBSplineInterpolationWeightFunctionTest.dir/itkCommandLineArgumentParser.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Testing/itkCommandLineArgumentParser.cxx [ 21%] Building CXX object Testing/CMakeFiles/itkAdvancedRecursiveBSplineTransformTest.dir/itkCommandLineArgumentParser.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Testing/CMakeFiles/itkAdvancedRecursiveBSplineTransformTest.dir/itkCommandLineArgumentParser.cxx.o -MF CMakeFiles/itkAdvancedRecursiveBSplineTransformTest.dir/itkCommandLineArgumentParser.cxx.o.d -o CMakeFiles/itkAdvancedRecursiveBSplineTransformTest.dir/itkCommandLineArgumentParser.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Testing/itkCommandLineArgumentParser.cxx [ 21%] Building CXX object Testing/CMakeFiles/itkBSplineInterpolationDerivativeWeightFunctionTest.dir/itkCommandLineArgumentParser.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Testing/CMakeFiles/itkBSplineInterpolationDerivativeWeightFunctionTest.dir/itkCommandLineArgumentParser.cxx.o -MF CMakeFiles/itkBSplineInterpolationDerivativeWeightFunctionTest.dir/itkCommandLineArgumentParser.cxx.o.d -o CMakeFiles/itkBSplineInterpolationDerivativeWeightFunctionTest.dir/itkCommandLineArgumentParser.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Testing/itkCommandLineArgumentParser.cxx [ 21%] Building CXX object Testing/CMakeFiles/itkBSplineInterpolationSODerivativeWeightFunctionTest.dir/itkCommandLineArgumentParser.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Testing/CMakeFiles/itkBSplineInterpolationSODerivativeWeightFunctionTest.dir/itkCommandLineArgumentParser.cxx.o -MF CMakeFiles/itkBSplineInterpolationSODerivativeWeightFunctionTest.dir/itkCommandLineArgumentParser.cxx.o.d -o CMakeFiles/itkBSplineInterpolationSODerivativeWeightFunctionTest.dir/itkCommandLineArgumentParser.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Testing/itkCommandLineArgumentParser.cxx [ 21%] Linking CXX executable ../bin/itkBSplineInterpolationWeightFunctionTest cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/cmake -E cmake_link_script CMakeFiles/itkBSplineInterpolationWeightFunctionTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -lniftiio CMakeFiles/itkBSplineInterpolationWeightFunctionTest.dir/itkBSplineInterpolationWeightFunctionTest.cxx.o CMakeFiles/itkBSplineInterpolationWeightFunctionTest.dir/itkCommandLineArgumentParser.cxx.o -o ../bin/itkBSplineInterpolationWeightFunctionTest ../bin/libparam-5.0.a ../bin/libmevisdcmtiff-5.0.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 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/usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libxml2.so /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libwrap.so /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -lpthread -ldl -lm [ 21%] Linking CXX executable ../bin/itkAdvancedRecursiveBSplineTransformTest cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/cmake -E cmake_link_script CMakeFiles/itkAdvancedRecursiveBSplineTransformTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -lniftiio CMakeFiles/itkAdvancedRecursiveBSplineTransformTest.dir/itkAdvancedRecursiveBSplineTransformTest.cxx.o CMakeFiles/itkAdvancedRecursiveBSplineTransformTest.dir/itkCommandLineArgumentParser.cxx.o -o ../bin/itkAdvancedRecursiveBSplineTransformTest ../bin/libparam-5.0.a ../bin/libmevisdcmtiff-5.0.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 -lcharls /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm -lm -ldl -lrt /usr/lib/x86_64-linux-gnu/libnetcdf.so /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libxml2.so /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libwrap.so /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -lpthread -ldl -lm [ 22%] Linking CXX executable ../bin/itkBSplineInterpolationDerivativeWeightFunctionTest cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/cmake -E cmake_link_script CMakeFiles/itkBSplineInterpolationDerivativeWeightFunctionTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -lniftiio CMakeFiles/itkBSplineInterpolationDerivativeWeightFunctionTest.dir/itkBSplineInterpolationDerivativeWeightFunctionTest.cxx.o CMakeFiles/itkBSplineInterpolationDerivativeWeightFunctionTest.dir/itkCommandLineArgumentParser.cxx.o -o ../bin/itkBSplineInterpolationDerivativeWeightFunctionTest ../bin/libparam-5.0.a ../bin/libmevisdcmtiff-5.0.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 -lcharls /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm -lm -ldl -lrt /usr/lib/x86_64-linux-gnu/libnetcdf.so /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libxml2.so /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libwrap.so /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -lpthread -ldl -lm make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 22%] Built target itkBSplineInterpolationWeightFunctionTest make -f Testing/CMakeFiles/itkCompareCompositeTransformsTest.dir/build.make Testing/CMakeFiles/itkCompareCompositeTransformsTest.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Testing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing/CMakeFiles/itkCompareCompositeTransformsTest.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Testing/CMakeFiles/itkCompareCompositeTransformsTest.dir/build.make Testing/CMakeFiles/itkCompareCompositeTransformsTest.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 22%] Building CXX object Testing/CMakeFiles/itkCompareCompositeTransformsTest.dir/itkCompareCompositeTransformsTest.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Testing/CMakeFiles/itkCompareCompositeTransformsTest.dir/itkCompareCompositeTransformsTest.cxx.o -MF CMakeFiles/itkCompareCompositeTransformsTest.dir/itkCompareCompositeTransformsTest.cxx.o.d -o CMakeFiles/itkCompareCompositeTransformsTest.dir/itkCompareCompositeTransformsTest.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Testing/itkCompareCompositeTransformsTest.cxx [ 22%] Built target itkAdvancedRecursiveBSplineTransformTest make -f Testing/CMakeFiles/itkMevisDicomTiffImageIOTest.dir/build.make Testing/CMakeFiles/itkMevisDicomTiffImageIOTest.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Testing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing/CMakeFiles/itkMevisDicomTiffImageIOTest.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Testing/CMakeFiles/itkMevisDicomTiffImageIOTest.dir/build.make Testing/CMakeFiles/itkMevisDicomTiffImageIOTest.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 22%] Building CXX object Testing/CMakeFiles/itkMevisDicomTiffImageIOTest.dir/itkMevisDicomTiffImageIOTest.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Testing/CMakeFiles/itkMevisDicomTiffImageIOTest.dir/itkMevisDicomTiffImageIOTest.cxx.o -MF CMakeFiles/itkMevisDicomTiffImageIOTest.dir/itkMevisDicomTiffImageIOTest.cxx.o.d -o CMakeFiles/itkMevisDicomTiffImageIOTest.dir/itkMevisDicomTiffImageIOTest.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Testing/itkMevisDicomTiffImageIOTest.cxx [ 23%] Linking CXX executable ../bin/itkBSplineInterpolationSODerivativeWeightFunctionTest cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/cmake -E cmake_link_script CMakeFiles/itkBSplineInterpolationSODerivativeWeightFunctionTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -lniftiio CMakeFiles/itkBSplineInterpolationSODerivativeWeightFunctionTest.dir/itkBSplineInterpolationSODerivativeWeightFunctionTest.cxx.o CMakeFiles/itkBSplineInterpolationSODerivativeWeightFunctionTest.dir/itkCommandLineArgumentParser.cxx.o -o ../bin/itkBSplineInterpolationSODerivativeWeightFunctionTest ../bin/libparam-5.0.a ../bin/libmevisdcmtiff-5.0.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 -lcharls /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm -lm -ldl -lrt /usr/lib/x86_64-linux-gnu/libnetcdf.so /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libxml2.so /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libwrap.so /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -lpthread -ldl -lm make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 23%] Built target itkBSplineInterpolationDerivativeWeightFunctionTest make -f Testing/CMakeFiles/itkThinPlateSplineTransformPerformanceTest.dir/build.make Testing/CMakeFiles/itkThinPlateSplineTransformPerformanceTest.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Testing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing/CMakeFiles/itkThinPlateSplineTransformPerformanceTest.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Testing/CMakeFiles/itkThinPlateSplineTransformPerformanceTest.dir/build.make Testing/CMakeFiles/itkThinPlateSplineTransformPerformanceTest.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 23%] Building CXX object Testing/CMakeFiles/itkThinPlateSplineTransformPerformanceTest.dir/itkThinPlateSplineTransformPerformanceTest.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Testing/CMakeFiles/itkThinPlateSplineTransformPerformanceTest.dir/itkThinPlateSplineTransformPerformanceTest.cxx.o -MF CMakeFiles/itkThinPlateSplineTransformPerformanceTest.dir/itkThinPlateSplineTransformPerformanceTest.cxx.o.d -o CMakeFiles/itkThinPlateSplineTransformPerformanceTest.dir/itkThinPlateSplineTransformPerformanceTest.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Testing/itkThinPlateSplineTransformPerformanceTest.cxx make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 23%] Built target itkBSplineInterpolationSODerivativeWeightFunctionTest make -f Testing/CMakeFiles/itkThinPlateSplineTransformTest.dir/build.make Testing/CMakeFiles/itkThinPlateSplineTransformTest.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Testing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing/CMakeFiles/itkThinPlateSplineTransformTest.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Testing/CMakeFiles/itkThinPlateSplineTransformTest.dir/build.make Testing/CMakeFiles/itkThinPlateSplineTransformTest.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 24%] Building CXX object Testing/CMakeFiles/itkThinPlateSplineTransformTest.dir/itkThinPlateSplineTransformTest.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Testing/CMakeFiles/itkThinPlateSplineTransformTest.dir/itkThinPlateSplineTransformTest.cxx.o -MF CMakeFiles/itkThinPlateSplineTransformTest.dir/itkThinPlateSplineTransformTest.cxx.o.d -o CMakeFiles/itkThinPlateSplineTransformTest.dir/itkThinPlateSplineTransformTest.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Testing/itkThinPlateSplineTransformTest.cxx [ 25%] Building CXX object Testing/CMakeFiles/itkMevisDicomTiffImageIOTest.dir/itkCommandLineArgumentParser.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Testing/CMakeFiles/itkMevisDicomTiffImageIOTest.dir/itkCommandLineArgumentParser.cxx.o -MF CMakeFiles/itkMevisDicomTiffImageIOTest.dir/itkCommandLineArgumentParser.cxx.o.d -o CMakeFiles/itkMevisDicomTiffImageIOTest.dir/itkCommandLineArgumentParser.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Testing/itkCommandLineArgumentParser.cxx [ 25%] Linking CXX executable ../bin/itkMevisDicomTiffImageIOTest cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/cmake -E cmake_link_script CMakeFiles/itkMevisDicomTiffImageIOTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -lniftiio CMakeFiles/itkMevisDicomTiffImageIOTest.dir/itkMevisDicomTiffImageIOTest.cxx.o CMakeFiles/itkMevisDicomTiffImageIOTest.dir/itkCommandLineArgumentParser.cxx.o -o ../bin/itkMevisDicomTiffImageIOTest ../bin/libparam-5.0.a ../bin/libmevisdcmtiff-5.0.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 -lcharls /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm -lm -ldl -lrt /usr/lib/x86_64-linux-gnu/libnetcdf.so /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libxml2.so /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libwrap.so /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -lpthread -ldl -lm make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 25%] Built target itkMevisDicomTiffImageIOTest make -f Testing/CMakeFiles/itkAdvanceOneStepParallellizationTest.dir/build.make Testing/CMakeFiles/itkAdvanceOneStepParallellizationTest.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Testing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing/CMakeFiles/itkAdvanceOneStepParallellizationTest.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Testing/CMakeFiles/itkAdvanceOneStepParallellizationTest.dir/build.make Testing/CMakeFiles/itkAdvanceOneStepParallellizationTest.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 25%] Building CXX object Testing/CMakeFiles/itkAdvanceOneStepParallellizationTest.dir/itkAdvanceOneStepParallellizationTest.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Testing/CMakeFiles/itkAdvanceOneStepParallellizationTest.dir/itkAdvanceOneStepParallellizationTest.cxx.o -MF CMakeFiles/itkAdvanceOneStepParallellizationTest.dir/itkAdvanceOneStepParallellizationTest.cxx.o.d -o CMakeFiles/itkAdvanceOneStepParallellizationTest.dir/itkAdvanceOneStepParallellizationTest.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Testing/itkAdvanceOneStepParallellizationTest.cxx [ 25%] Building CXX object Testing/CMakeFiles/itkAdvanceOneStepParallellizationTest.dir/itkCommandLineArgumentParser.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Testing/CMakeFiles/itkAdvanceOneStepParallellizationTest.dir/itkCommandLineArgumentParser.cxx.o -MF CMakeFiles/itkAdvanceOneStepParallellizationTest.dir/itkCommandLineArgumentParser.cxx.o.d -o CMakeFiles/itkAdvanceOneStepParallellizationTest.dir/itkCommandLineArgumentParser.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Testing/itkCommandLineArgumentParser.cxx [ 26%] Linking CXX executable ../bin/itkAdvanceOneStepParallellizationTest cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/cmake -E cmake_link_script CMakeFiles/itkAdvanceOneStepParallellizationTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -lniftiio CMakeFiles/itkAdvanceOneStepParallellizationTest.dir/itkAdvanceOneStepParallellizationTest.cxx.o CMakeFiles/itkAdvanceOneStepParallellizationTest.dir/itkCommandLineArgumentParser.cxx.o -o ../bin/itkAdvanceOneStepParallellizationTest ../bin/libparam-5.0.a ../bin/libmevisdcmtiff-5.0.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 -lcharls /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm -lm -ldl -lrt /usr/lib/x86_64-linux-gnu/libnetcdf.so /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libxml2.so /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libwrap.so /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -lpthread -ldl -lm make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 26%] Built target itkAdvanceOneStepParallellizationTest [ 26%] Building CXX object Testing/CMakeFiles/itkThinPlateSplineTransformTest.dir/itkCommandLineArgumentParser.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Testing/CMakeFiles/itkThinPlateSplineTransformTest.dir/itkCommandLineArgumentParser.cxx.o -MF CMakeFiles/itkThinPlateSplineTransformTest.dir/itkCommandLineArgumentParser.cxx.o.d -o CMakeFiles/itkThinPlateSplineTransformTest.dir/itkCommandLineArgumentParser.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Testing/itkCommandLineArgumentParser.cxx make -f Testing/CMakeFiles/itkAccumulateDerivativesParallellizationTest.dir/build.make Testing/CMakeFiles/itkAccumulateDerivativesParallellizationTest.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Testing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing/CMakeFiles/itkAccumulateDerivativesParallellizationTest.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Testing/CMakeFiles/itkAccumulateDerivativesParallellizationTest.dir/build.make Testing/CMakeFiles/itkAccumulateDerivativesParallellizationTest.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 27%] Building CXX object Testing/CMakeFiles/itkAccumulateDerivativesParallellizationTest.dir/itkAccumulateDerivativesParallellizationTest.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Testing/CMakeFiles/itkAccumulateDerivativesParallellizationTest.dir/itkAccumulateDerivativesParallellizationTest.cxx.o -MF CMakeFiles/itkAccumulateDerivativesParallellizationTest.dir/itkAccumulateDerivativesParallellizationTest.cxx.o.d -o CMakeFiles/itkAccumulateDerivativesParallellizationTest.dir/itkAccumulateDerivativesParallellizationTest.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Testing/itkAccumulateDerivativesParallellizationTest.cxx [ 28%] Building CXX object Testing/CMakeFiles/itkThinPlateSplineTransformPerformanceTest.dir/itkCommandLineArgumentParser.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Testing/CMakeFiles/itkThinPlateSplineTransformPerformanceTest.dir/itkCommandLineArgumentParser.cxx.o -MF CMakeFiles/itkThinPlateSplineTransformPerformanceTest.dir/itkCommandLineArgumentParser.cxx.o.d -o CMakeFiles/itkThinPlateSplineTransformPerformanceTest.dir/itkCommandLineArgumentParser.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Testing/itkCommandLineArgumentParser.cxx [ 28%] Linking CXX executable ../bin/itkThinPlateSplineTransformTest cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/cmake -E cmake_link_script CMakeFiles/itkThinPlateSplineTransformTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -lniftiio CMakeFiles/itkThinPlateSplineTransformTest.dir/itkThinPlateSplineTransformTest.cxx.o CMakeFiles/itkThinPlateSplineTransformTest.dir/itkCommandLineArgumentParser.cxx.o -o ../bin/itkThinPlateSplineTransformTest ../bin/libparam-5.0.a ../bin/libmevisdcmtiff-5.0.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 -lcharls /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm -lm -ldl -lrt /usr/lib/x86_64-linux-gnu/libnetcdf.so /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libxml2.so /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libwrap.so /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -lpthread -ldl -lm [ 28%] Building CXX object Testing/CMakeFiles/itkAccumulateDerivativesParallellizationTest.dir/itkCommandLineArgumentParser.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Testing/CMakeFiles/itkAccumulateDerivativesParallellizationTest.dir/itkCommandLineArgumentParser.cxx.o -MF CMakeFiles/itkAccumulateDerivativesParallellizationTest.dir/itkCommandLineArgumentParser.cxx.o.d -o CMakeFiles/itkAccumulateDerivativesParallellizationTest.dir/itkCommandLineArgumentParser.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Testing/itkCommandLineArgumentParser.cxx make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 28%] Built target itkThinPlateSplineTransformTest make -f Testing/CMakeFiles/itkBSplineTransformPointPerformanceTest.dir/build.make Testing/CMakeFiles/itkBSplineTransformPointPerformanceTest.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Testing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing/CMakeFiles/itkBSplineTransformPointPerformanceTest.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Testing/CMakeFiles/itkBSplineTransformPointPerformanceTest.dir/build.make Testing/CMakeFiles/itkBSplineTransformPointPerformanceTest.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 29%] Building CXX object Testing/CMakeFiles/itkBSplineTransformPointPerformanceTest.dir/itkBSplineTransformPointPerformanceTest.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Testing/CMakeFiles/itkBSplineTransformPointPerformanceTest.dir/itkBSplineTransformPointPerformanceTest.cxx.o -MF CMakeFiles/itkBSplineTransformPointPerformanceTest.dir/itkBSplineTransformPointPerformanceTest.cxx.o.d -o CMakeFiles/itkBSplineTransformPointPerformanceTest.dir/itkBSplineTransformPointPerformanceTest.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Testing/itkBSplineTransformPointPerformanceTest.cxx [ 29%] Linking CXX executable ../bin/itkThinPlateSplineTransformPerformanceTest cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/cmake -E cmake_link_script CMakeFiles/itkThinPlateSplineTransformPerformanceTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -lniftiio CMakeFiles/itkThinPlateSplineTransformPerformanceTest.dir/itkThinPlateSplineTransformPerformanceTest.cxx.o CMakeFiles/itkThinPlateSplineTransformPerformanceTest.dir/itkCommandLineArgumentParser.cxx.o -o ../bin/itkThinPlateSplineTransformPerformanceTest ../bin/libparam-5.0.a ../bin/libmevisdcmtiff-5.0.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 -lcharls /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm -lm -ldl -lrt /usr/lib/x86_64-linux-gnu/libnetcdf.so /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libxml2.so /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libwrap.so /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -lpthread -ldl -lm [ 30%] Linking CXX executable ../bin/itkAccumulateDerivativesParallellizationTest cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/cmake -E cmake_link_script CMakeFiles/itkAccumulateDerivativesParallellizationTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -lniftiio CMakeFiles/itkAccumulateDerivativesParallellizationTest.dir/itkAccumulateDerivativesParallellizationTest.cxx.o CMakeFiles/itkAccumulateDerivativesParallellizationTest.dir/itkCommandLineArgumentParser.cxx.o -o ../bin/itkAccumulateDerivativesParallellizationTest ../bin/libparam-5.0.a ../bin/libmevisdcmtiff-5.0.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 -lcharls /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm -lm -ldl -lrt /usr/lib/x86_64-linux-gnu/libnetcdf.so /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libxml2.so /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libwrap.so /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -lpthread -ldl -lm make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 30%] Built target itkThinPlateSplineTransformPerformanceTest make -f Testing/CMakeFiles/itkBSplineJacobianGradientPerformanceTest.dir/build.make Testing/CMakeFiles/itkBSplineJacobianGradientPerformanceTest.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Testing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing/CMakeFiles/itkBSplineJacobianGradientPerformanceTest.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Testing/CMakeFiles/itkBSplineJacobianGradientPerformanceTest.dir/build.make Testing/CMakeFiles/itkBSplineJacobianGradientPerformanceTest.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 30%] Building CXX object Testing/CMakeFiles/itkBSplineJacobianGradientPerformanceTest.dir/itkBSplineJacobianGradientPerformanceTest.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Testing/CMakeFiles/itkBSplineJacobianGradientPerformanceTest.dir/itkBSplineJacobianGradientPerformanceTest.cxx.o -MF CMakeFiles/itkBSplineJacobianGradientPerformanceTest.dir/itkBSplineJacobianGradientPerformanceTest.cxx.o.d -o CMakeFiles/itkBSplineJacobianGradientPerformanceTest.dir/itkBSplineJacobianGradientPerformanceTest.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Testing/itkBSplineJacobianGradientPerformanceTest.cxx make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 30%] Built target itkAccumulateDerivativesParallellizationTest [ 30%] Building CXX object Testing/CMakeFiles/itkBSplineTransformPointPerformanceTest.dir/itkCommandLineArgumentParser.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Testing/CMakeFiles/itkBSplineTransformPointPerformanceTest.dir/itkCommandLineArgumentParser.cxx.o -MF CMakeFiles/itkBSplineTransformPointPerformanceTest.dir/itkCommandLineArgumentParser.cxx.o.d -o CMakeFiles/itkBSplineTransformPointPerformanceTest.dir/itkCommandLineArgumentParser.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Testing/itkCommandLineArgumentParser.cxx [ 31%] Building CXX object Testing/CMakeFiles/itkBSplineJacobianGradientPerformanceTest.dir/itkCommandLineArgumentParser.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Testing/CMakeFiles/itkBSplineJacobianGradientPerformanceTest.dir/itkCommandLineArgumentParser.cxx.o -MF CMakeFiles/itkBSplineJacobianGradientPerformanceTest.dir/itkCommandLineArgumentParser.cxx.o.d -o CMakeFiles/itkBSplineJacobianGradientPerformanceTest.dir/itkCommandLineArgumentParser.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Testing/itkCommandLineArgumentParser.cxx [ 31%] Building CXX object Testing/CMakeFiles/itkCompareCompositeTransformsTest.dir/itkCommandLineArgumentParser.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Testing/CMakeFiles/itkCompareCompositeTransformsTest.dir/itkCommandLineArgumentParser.cxx.o -MF CMakeFiles/itkCompareCompositeTransformsTest.dir/itkCommandLineArgumentParser.cxx.o.d -o CMakeFiles/itkCompareCompositeTransformsTest.dir/itkCommandLineArgumentParser.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Testing/itkCommandLineArgumentParser.cxx [ 32%] Linking CXX executable ../bin/itkBSplineTransformPointPerformanceTest cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/cmake -E cmake_link_script CMakeFiles/itkBSplineTransformPointPerformanceTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 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/usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libxml2.so /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libwrap.so /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -lpthread -ldl -lm make -f Core/CMakeFiles/elxCore.dir/build.make Core/CMakeFiles/elxCore.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Core /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Core /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Core/CMakeFiles/elxCore.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Core/CMakeFiles/elxCore.dir/build.make Core/CMakeFiles/elxCore.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 33%] 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-I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Core/CMakeFiles/elxCore.dir/Kernel/elxElastixBase.cxx.o -MF CMakeFiles/elxCore.dir/Kernel/elxElastixBase.cxx.o.d -o CMakeFiles/elxCore.dir/Kernel/elxElastixBase.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel/elxElastixBase.cxx make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 34%] Linking CXX executable ../bin/itkCompareCompositeTransformsTest cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/cmake -E cmake_link_script CMakeFiles/itkCompareCompositeTransformsTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -lniftiio CMakeFiles/itkCompareCompositeTransformsTest.dir/itkCompareCompositeTransformsTest.cxx.o CMakeFiles/itkCompareCompositeTransformsTest.dir/itkCommandLineArgumentParser.cxx.o -o ../bin/itkCompareCompositeTransformsTest ../bin/libparam-5.0.a ../bin/libmevisdcmtiff-5.0.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 -lcharls /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so 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/usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libxml2.so /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libwrap.so /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -lpthread -ldl -lm [ 34%] Built target itkBSplineTransformPointPerformanceTest make -f Components/Metrics/KNNGraphAlphaMutualInformation/KNN/CMakeFiles/KNNlib.dir/build.make Components/Metrics/KNNGraphAlphaMutualInformation/KNN/CMakeFiles/KNNlib.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/KNNGraphAlphaMutualInformation/KNN /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/CMakeFiles/KNNlib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Metrics/KNNGraphAlphaMutualInformation/KNN/CMakeFiles/KNNlib.dir/build.make Components/Metrics/KNNGraphAlphaMutualInformation/KNN/CMakeFiles/KNNlib.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 34%] Building CXX object Components/Metrics/KNNGraphAlphaMutualInformation/KNN/CMakeFiles/KNNlib.dir/itkANNBinaryTreeCreator.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/KNNGraphAlphaMutualInformation/KNN && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Metrics/KNNGraphAlphaMutualInformation/KNN/CMakeFiles/KNNlib.dir/itkANNBinaryTreeCreator.cxx.o -MF CMakeFiles/KNNlib.dir/itkANNBinaryTreeCreator.cxx.o.d -o CMakeFiles/KNNlib.dir/itkANNBinaryTreeCreator.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/itkANNBinaryTreeCreator.cxx [ 35%] Linking CXX static library ../../../../bin/libKNNlib-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/KNNGraphAlphaMutualInformation/KNN && /usr/bin/cmake -P CMakeFiles/KNNlib.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/KNNGraphAlphaMutualInformation/KNN && /usr/bin/cmake -E cmake_link_script CMakeFiles/KNNlib.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../bin/libKNNlib-5.0.a CMakeFiles/KNNlib.dir/itkANNBinaryTreeCreator.cxx.o /usr/bin/ranlib ../../../../bin/libKNNlib-5.0.a make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 35%] Built target KNNlib [ 35%] Built target itkCompareCompositeTransformsTest [ 35%] Building CXX object Core/CMakeFiles/elxCore.dir/Install/elxComponentDatabase.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Core && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Core/CMakeFiles/elxCore.dir/Install/elxComponentDatabase.cxx.o -MF CMakeFiles/elxCore.dir/Install/elxComponentDatabase.cxx.o.d -o CMakeFiles/elxCore.dir/Install/elxComponentDatabase.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Core/Install/elxComponentDatabase.cxx [ 36%] Building CXX object Core/CMakeFiles/elxCore.dir/Install/elxBaseComponent.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Core && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Core/CMakeFiles/elxCore.dir/Install/elxBaseComponent.cxx.o -MF CMakeFiles/elxCore.dir/Install/elxBaseComponent.cxx.o.d -o CMakeFiles/elxCore.dir/Install/elxBaseComponent.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Core/Install/elxBaseComponent.cxx [ 36%] Building CXX object Core/CMakeFiles/elxCore.dir/Configuration/elxConfiguration.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Core && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Core/CMakeFiles/elxCore.dir/Configuration/elxConfiguration.cxx.o -MF CMakeFiles/elxCore.dir/Configuration/elxConfiguration.cxx.o.d -o CMakeFiles/elxCore.dir/Configuration/elxConfiguration.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration/elxConfiguration.cxx [ 36%] Linking CXX executable ../bin/itkBSplineJacobianGradientPerformanceTest cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing && /usr/bin/cmake -E cmake_link_script CMakeFiles/itkBSplineJacobianGradientPerformanceTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -lniftiio CMakeFiles/itkBSplineJacobianGradientPerformanceTest.dir/itkBSplineJacobianGradientPerformanceTest.cxx.o CMakeFiles/itkBSplineJacobianGradientPerformanceTest.dir/itkCommandLineArgumentParser.cxx.o -o ../bin/itkBSplineJacobianGradientPerformanceTest ../bin/libparam-5.0.a ../bin/libmevisdcmtiff-5.0.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 -lcharls /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmrt.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmseg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtract.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.16.3.6.6 /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 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/usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmimage.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libxml2.so /usr/lib/x86_64-linux-gnu/libdcmdsig.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmnet.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libwrap.so /usr/lib/x86_64-linux-gnu/libdcmimgle.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmfg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmiod.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmdata.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/liboflog.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libofstd.so.16.3.6.6 -lnsl -lpthread /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -lpthread -ldl -lm make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 36%] Building CXX object Core/CMakeFiles/elxCore.dir/elxProgressCommand.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Core && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Core/CMakeFiles/elxCore.dir/elxProgressCommand.cxx.o -MF CMakeFiles/elxCore.dir/elxProgressCommand.cxx.o.d -o CMakeFiles/elxCore.dir/elxProgressCommand.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Core/elxProgressCommand.cxx [ 36%] Built target itkBSplineJacobianGradientPerformanceTest [ 37%] Linking CXX static library ../bin/libelxCore-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Core && /usr/bin/cmake -P CMakeFiles/elxCore.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Core && /usr/bin/cmake -E cmake_link_script CMakeFiles/elxCore.dir/link.txt --verbose=1 /usr/bin/ar qc ../bin/libelxCore-5.0.a CMakeFiles/elxCore.dir/Kernel/elxElastixBase.cxx.o CMakeFiles/elxCore.dir/Install/elxComponentDatabase.cxx.o CMakeFiles/elxCore.dir/Install/elxBaseComponent.cxx.o CMakeFiles/elxCore.dir/Configuration/elxConfiguration.cxx.o CMakeFiles/elxCore.dir/elxProgressCommand.cxx.o /usr/bin/ranlib ../bin/libelxCore-5.0.a make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 37%] Built target elxCore make -f Components/FixedImagePyramids/FixedGenericPyramid/CMakeFiles/FixedGenericPyramid.dir/build.make Components/FixedImagePyramids/FixedGenericPyramid/CMakeFiles/FixedGenericPyramid.dir/depend make -f Components/FixedImagePyramids/FixedRecursivePyramid/CMakeFiles/FixedRecursivePyramid.dir/build.make Components/FixedImagePyramids/FixedRecursivePyramid/CMakeFiles/FixedRecursivePyramid.dir/depend make -f Components/FixedImagePyramids/FixedSmoothingPyramid/CMakeFiles/FixedSmoothingPyramid.dir/build.make Components/FixedImagePyramids/FixedSmoothingPyramid/CMakeFiles/FixedSmoothingPyramid.dir/depend make -f Components/ImageSamplers/Full/CMakeFiles/FullSampler.dir/build.make Components/ImageSamplers/Full/CMakeFiles/FullSampler.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids/FixedGenericPyramid /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/FixedImagePyramids/FixedGenericPyramid /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/FixedImagePyramids/FixedGenericPyramid/CMakeFiles/FixedGenericPyramid.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids/FixedRecursivePyramid /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/FixedImagePyramids/FixedRecursivePyramid /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/FixedImagePyramids/FixedRecursivePyramid/CMakeFiles/FixedRecursivePyramid.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids/FixedSmoothingPyramid /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/FixedImagePyramids/FixedSmoothingPyramid /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/FixedImagePyramids/FixedSmoothingPyramid/CMakeFiles/FixedSmoothingPyramid.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers/Full /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ImageSamplers/Full /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ImageSamplers/Full/CMakeFiles/FullSampler.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/FixedImagePyramids/FixedGenericPyramid/CMakeFiles/FixedGenericPyramid.dir/build.make Components/FixedImagePyramids/FixedGenericPyramid/CMakeFiles/FixedGenericPyramid.dir/build make -f Components/FixedImagePyramids/FixedRecursivePyramid/CMakeFiles/FixedRecursivePyramid.dir/build.make Components/FixedImagePyramids/FixedRecursivePyramid/CMakeFiles/FixedRecursivePyramid.dir/build make -f Components/FixedImagePyramids/FixedSmoothingPyramid/CMakeFiles/FixedSmoothingPyramid.dir/build.make Components/FixedImagePyramids/FixedSmoothingPyramid/CMakeFiles/FixedSmoothingPyramid.dir/build make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/ImageSamplers/Full/CMakeFiles/FullSampler.dir/build.make Components/ImageSamplers/Full/CMakeFiles/FullSampler.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 37%] Building CXX object Components/FixedImagePyramids/FixedGenericPyramid/CMakeFiles/FixedGenericPyramid.dir/elxFixedGenericPyramid.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/FixedImagePyramids/FixedGenericPyramid && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/FixedImagePyramids/FixedGenericPyramid/CMakeFiles/FixedGenericPyramid.dir/elxFixedGenericPyramid.cxx.o -MF CMakeFiles/FixedGenericPyramid.dir/elxFixedGenericPyramid.cxx.o.d -o CMakeFiles/FixedGenericPyramid.dir/elxFixedGenericPyramid.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids/FixedGenericPyramid/elxFixedGenericPyramid.cxx [ 38%] Building CXX object Components/FixedImagePyramids/FixedRecursivePyramid/CMakeFiles/FixedRecursivePyramid.dir/elxFixedRecursivePyramid.cxx.o [ 38%] Building CXX object Components/FixedImagePyramids/FixedSmoothingPyramid/CMakeFiles/FixedSmoothingPyramid.dir/elxFixedSmoothingPyramid.cxx.o [ 39%] Building CXX object Components/ImageSamplers/Full/CMakeFiles/FullSampler.dir/elxFullSampler.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/FixedImagePyramids/FixedRecursivePyramid && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/FixedImagePyramids/FixedRecursivePyramid/CMakeFiles/FixedRecursivePyramid.dir/elxFixedRecursivePyramid.cxx.o -MF CMakeFiles/FixedRecursivePyramid.dir/elxFixedRecursivePyramid.cxx.o.d -o CMakeFiles/FixedRecursivePyramid.dir/elxFixedRecursivePyramid.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids/FixedRecursivePyramid/elxFixedRecursivePyramid.cxx cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/FixedImagePyramids/FixedSmoothingPyramid && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/FixedImagePyramids/FixedSmoothingPyramid/CMakeFiles/FixedSmoothingPyramid.dir/elxFixedSmoothingPyramid.cxx.o -MF CMakeFiles/FixedSmoothingPyramid.dir/elxFixedSmoothingPyramid.cxx.o.d -o CMakeFiles/FixedSmoothingPyramid.dir/elxFixedSmoothingPyramid.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids/FixedSmoothingPyramid/elxFixedSmoothingPyramid.cxx cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ImageSamplers/Full && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/ImageSamplers/Full/CMakeFiles/FullSampler.dir/elxFullSampler.cxx.o -MF CMakeFiles/FullSampler.dir/elxFullSampler.cxx.o.d -o CMakeFiles/FullSampler.dir/elxFullSampler.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers/Full/elxFullSampler.cxx [ 39%] Linking CXX static library ../../../bin/libFullSampler-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ImageSamplers/Full && /usr/bin/cmake -P CMakeFiles/FullSampler.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ImageSamplers/Full && /usr/bin/cmake -E cmake_link_script CMakeFiles/FullSampler.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libFullSampler-5.0.a CMakeFiles/FullSampler.dir/elxFullSampler.cxx.o /usr/bin/ranlib ../../../bin/libFullSampler-5.0.a make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 39%] Built target FullSampler make -f Components/ImageSamplers/Grid/CMakeFiles/GridSampler.dir/build.make Components/ImageSamplers/Grid/CMakeFiles/GridSampler.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers/Grid /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ImageSamplers/Grid /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ImageSamplers/Grid/CMakeFiles/GridSampler.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/ImageSamplers/Grid/CMakeFiles/GridSampler.dir/build.make Components/ImageSamplers/Grid/CMakeFiles/GridSampler.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 40%] Building CXX object Components/ImageSamplers/Grid/CMakeFiles/GridSampler.dir/elxGridSampler.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ImageSamplers/Grid && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/ImageSamplers/Grid/CMakeFiles/GridSampler.dir/elxGridSampler.cxx.o -MF CMakeFiles/GridSampler.dir/elxGridSampler.cxx.o.d -o CMakeFiles/GridSampler.dir/elxGridSampler.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers/Grid/elxGridSampler.cxx [ 40%] Linking CXX static library ../../../bin/libGridSampler-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ImageSamplers/Grid && /usr/bin/cmake -P CMakeFiles/GridSampler.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ImageSamplers/Grid && /usr/bin/cmake -E cmake_link_script CMakeFiles/GridSampler.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libGridSampler-5.0.a CMakeFiles/GridSampler.dir/elxGridSampler.cxx.o /usr/bin/ranlib ../../../bin/libGridSampler-5.0.a make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 40%] Built target GridSampler make -f Components/ImageSamplers/MultInputRandomCoordinate/CMakeFiles/MultiInputRandomCoordinateSampler.dir/build.make Components/ImageSamplers/MultInputRandomCoordinate/CMakeFiles/MultiInputRandomCoordinateSampler.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers/MultInputRandomCoordinate /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ImageSamplers/MultInputRandomCoordinate /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ImageSamplers/MultInputRandomCoordinate/CMakeFiles/MultiInputRandomCoordinateSampler.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/ImageSamplers/MultInputRandomCoordinate/CMakeFiles/MultiInputRandomCoordinateSampler.dir/build.make Components/ImageSamplers/MultInputRandomCoordinate/CMakeFiles/MultiInputRandomCoordinateSampler.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 40%] Building CXX object Components/ImageSamplers/MultInputRandomCoordinate/CMakeFiles/MultiInputRandomCoordinateSampler.dir/elxMultiInputRandomCoordinateSampler.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ImageSamplers/MultInputRandomCoordinate && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/ImageSamplers/MultInputRandomCoordinate/CMakeFiles/MultiInputRandomCoordinateSampler.dir/elxMultiInputRandomCoordinateSampler.cxx.o -MF CMakeFiles/MultiInputRandomCoordinateSampler.dir/elxMultiInputRandomCoordinateSampler.cxx.o.d -o CMakeFiles/MultiInputRandomCoordinateSampler.dir/elxMultiInputRandomCoordinateSampler.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers/MultInputRandomCoordinate/elxMultiInputRandomCoordinateSampler.cxx [ 41%] Linking CXX static library ../../../bin/libMultiInputRandomCoordinateSampler-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ImageSamplers/MultInputRandomCoordinate && /usr/bin/cmake -P CMakeFiles/MultiInputRandomCoordinateSampler.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ImageSamplers/MultInputRandomCoordinate && /usr/bin/cmake -E cmake_link_script CMakeFiles/MultiInputRandomCoordinateSampler.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libMultiInputRandomCoordinateSampler-5.0.a CMakeFiles/MultiInputRandomCoordinateSampler.dir/elxMultiInputRandomCoordinateSampler.cxx.o /usr/bin/ranlib ../../../bin/libMultiInputRandomCoordinateSampler-5.0.a make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 41%] Built target MultiInputRandomCoordinateSampler make -f Components/ImageSamplers/Random/CMakeFiles/RandomSampler.dir/build.make Components/ImageSamplers/Random/CMakeFiles/RandomSampler.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers/Random /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ImageSamplers/Random /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ImageSamplers/Random/CMakeFiles/RandomSampler.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/ImageSamplers/Random/CMakeFiles/RandomSampler.dir/build.make Components/ImageSamplers/Random/CMakeFiles/RandomSampler.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 41%] Building CXX object Components/ImageSamplers/Random/CMakeFiles/RandomSampler.dir/elxRandomSampler.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ImageSamplers/Random && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/ImageSamplers/Random/CMakeFiles/RandomSampler.dir/elxRandomSampler.cxx.o -MF CMakeFiles/RandomSampler.dir/elxRandomSampler.cxx.o.d -o CMakeFiles/RandomSampler.dir/elxRandomSampler.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers/Random/elxRandomSampler.cxx [ 41%] Linking CXX static library ../../../bin/libFixedRecursivePyramid-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/FixedImagePyramids/FixedRecursivePyramid && /usr/bin/cmake -P CMakeFiles/FixedRecursivePyramid.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/FixedImagePyramids/FixedRecursivePyramid && /usr/bin/cmake -E cmake_link_script CMakeFiles/FixedRecursivePyramid.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libFixedRecursivePyramid-5.0.a CMakeFiles/FixedRecursivePyramid.dir/elxFixedRecursivePyramid.cxx.o [ 41%] Linking CXX static library ../../../bin/libFixedSmoothingPyramid-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/FixedImagePyramids/FixedSmoothingPyramid && /usr/bin/cmake -P CMakeFiles/FixedSmoothingPyramid.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/FixedImagePyramids/FixedSmoothingPyramid && /usr/bin/cmake -E cmake_link_script CMakeFiles/FixedSmoothingPyramid.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libFixedSmoothingPyramid-5.0.a CMakeFiles/FixedSmoothingPyramid.dir/elxFixedSmoothingPyramid.cxx.o [ 42%] Linking CXX static library ../../../bin/libFixedGenericPyramid-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/FixedImagePyramids/FixedGenericPyramid && /usr/bin/cmake -P CMakeFiles/FixedGenericPyramid.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/FixedImagePyramids/FixedGenericPyramid && /usr/bin/cmake -E cmake_link_script CMakeFiles/FixedGenericPyramid.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libFixedGenericPyramid-5.0.a CMakeFiles/FixedGenericPyramid.dir/elxFixedGenericPyramid.cxx.o [ 43%] Linking CXX static library ../../../bin/libRandomSampler-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ImageSamplers/Random && /usr/bin/cmake -P CMakeFiles/RandomSampler.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ImageSamplers/Random && /usr/bin/cmake -E cmake_link_script CMakeFiles/RandomSampler.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libRandomSampler-5.0.a CMakeFiles/RandomSampler.dir/elxRandomSampler.cxx.o /usr/bin/ranlib ../../../bin/libRandomSampler-5.0.a make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 43%] Built target RandomSampler make -f Components/ImageSamplers/RandomCoordinate/CMakeFiles/RandomCoordinateSampler.dir/build.make Components/ImageSamplers/RandomCoordinate/CMakeFiles/RandomCoordinateSampler.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers/RandomCoordinate /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ImageSamplers/RandomCoordinate /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ImageSamplers/RandomCoordinate/CMakeFiles/RandomCoordinateSampler.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/ImageSamplers/RandomCoordinate/CMakeFiles/RandomCoordinateSampler.dir/build.make Components/ImageSamplers/RandomCoordinate/CMakeFiles/RandomCoordinateSampler.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 44%] Building CXX object Components/ImageSamplers/RandomCoordinate/CMakeFiles/RandomCoordinateSampler.dir/elxRandomCoordinateSampler.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ImageSamplers/RandomCoordinate && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/ImageSamplers/RandomCoordinate/CMakeFiles/RandomCoordinateSampler.dir/elxRandomCoordinateSampler.cxx.o -MF CMakeFiles/RandomCoordinateSampler.dir/elxRandomCoordinateSampler.cxx.o.d -o CMakeFiles/RandomCoordinateSampler.dir/elxRandomCoordinateSampler.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers/RandomCoordinate/elxRandomCoordinateSampler.cxx /usr/bin/ranlib ../../../bin/libFixedSmoothingPyramid-5.0.a /usr/bin/ranlib ../../../bin/libFixedRecursivePyramid-5.0.a /usr/bin/ranlib ../../../bin/libFixedGenericPyramid-5.0.a [ 44%] Linking CXX static library ../../../bin/libRandomCoordinateSampler-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ImageSamplers/RandomCoordinate && /usr/bin/cmake -P CMakeFiles/RandomCoordinateSampler.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ImageSamplers/RandomCoordinate && /usr/bin/cmake -E cmake_link_script CMakeFiles/RandomCoordinateSampler.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libRandomCoordinateSampler-5.0.a CMakeFiles/RandomCoordinateSampler.dir/elxRandomCoordinateSampler.cxx.o /usr/bin/ranlib ../../../bin/libRandomCoordinateSampler-5.0.a make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 44%] Built target RandomCoordinateSampler make -f Components/ImageSamplers/RandomSparseMask/CMakeFiles/RandomSamplerSparseMask.dir/build.make Components/ImageSamplers/RandomSparseMask/CMakeFiles/RandomSamplerSparseMask.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers/RandomSparseMask /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ImageSamplers/RandomSparseMask /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ImageSamplers/RandomSparseMask/CMakeFiles/RandomSamplerSparseMask.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/ImageSamplers/RandomSparseMask/CMakeFiles/RandomSamplerSparseMask.dir/build.make Components/ImageSamplers/RandomSparseMask/CMakeFiles/RandomSamplerSparseMask.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 44%] Building CXX object Components/ImageSamplers/RandomSparseMask/CMakeFiles/RandomSamplerSparseMask.dir/elxRandomSamplerSparseMask.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ImageSamplers/RandomSparseMask && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/ImageSamplers/RandomSparseMask/CMakeFiles/RandomSamplerSparseMask.dir/elxRandomSamplerSparseMask.cxx.o -MF CMakeFiles/RandomSamplerSparseMask.dir/elxRandomSamplerSparseMask.cxx.o.d -o CMakeFiles/RandomSamplerSparseMask.dir/elxRandomSamplerSparseMask.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers/RandomSparseMask/elxRandomSamplerSparseMask.cxx make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 44%] Built target FixedRecursivePyramid make -f Components/Interpolators/BSplineInterpolator/CMakeFiles/BSplineInterpolator.dir/build.make Components/Interpolators/BSplineInterpolator/CMakeFiles/BSplineInterpolator.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators/BSplineInterpolator /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Interpolators/BSplineInterpolator /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Interpolators/BSplineInterpolator/CMakeFiles/BSplineInterpolator.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Interpolators/BSplineInterpolator/CMakeFiles/BSplineInterpolator.dir/build.make Components/Interpolators/BSplineInterpolator/CMakeFiles/BSplineInterpolator.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 45%] Building CXX object Components/Interpolators/BSplineInterpolator/CMakeFiles/BSplineInterpolator.dir/elxBSplineInterpolator.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Interpolators/BSplineInterpolator && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Interpolators/BSplineInterpolator/CMakeFiles/BSplineInterpolator.dir/elxBSplineInterpolator.cxx.o -MF CMakeFiles/BSplineInterpolator.dir/elxBSplineInterpolator.cxx.o.d -o CMakeFiles/BSplineInterpolator.dir/elxBSplineInterpolator.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators/BSplineInterpolator/elxBSplineInterpolator.cxx [ 45%] Built target FixedSmoothingPyramid make -f Components/Interpolators/LinearInterpolator/CMakeFiles/LinearInterpolator.dir/build.make Components/Interpolators/LinearInterpolator/CMakeFiles/LinearInterpolator.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators/LinearInterpolator /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Interpolators/LinearInterpolator /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Interpolators/LinearInterpolator/CMakeFiles/LinearInterpolator.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Interpolators/LinearInterpolator/CMakeFiles/LinearInterpolator.dir/build.make Components/Interpolators/LinearInterpolator/CMakeFiles/LinearInterpolator.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 45%] Building CXX object Components/Interpolators/LinearInterpolator/CMakeFiles/LinearInterpolator.dir/elxLinearInterpolator.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Interpolators/LinearInterpolator && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Interpolators/LinearInterpolator/CMakeFiles/LinearInterpolator.dir/elxLinearInterpolator.cxx.o -MF CMakeFiles/LinearInterpolator.dir/elxLinearInterpolator.cxx.o.d -o CMakeFiles/LinearInterpolator.dir/elxLinearInterpolator.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators/LinearInterpolator/elxLinearInterpolator.cxx make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 45%] Built target FixedGenericPyramid make -f Components/Interpolators/ReducedDimensionBSplineInterpolator/CMakeFiles/ReducedDimensionBSplineInterpolator.dir/build.make Components/Interpolators/ReducedDimensionBSplineInterpolator/CMakeFiles/ReducedDimensionBSplineInterpolator.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators/ReducedDimensionBSplineInterpolator /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Interpolators/ReducedDimensionBSplineInterpolator /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Interpolators/ReducedDimensionBSplineInterpolator/CMakeFiles/ReducedDimensionBSplineInterpolator.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Interpolators/ReducedDimensionBSplineInterpolator/CMakeFiles/ReducedDimensionBSplineInterpolator.dir/build.make Components/Interpolators/ReducedDimensionBSplineInterpolator/CMakeFiles/ReducedDimensionBSplineInterpolator.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 46%] Building CXX object Components/Interpolators/ReducedDimensionBSplineInterpolator/CMakeFiles/ReducedDimensionBSplineInterpolator.dir/elxReducedDimensionBSplineInterpolator.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Interpolators/ReducedDimensionBSplineInterpolator && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Interpolators/ReducedDimensionBSplineInterpolator/CMakeFiles/ReducedDimensionBSplineInterpolator.dir/elxReducedDimensionBSplineInterpolator.cxx.o -MF CMakeFiles/ReducedDimensionBSplineInterpolator.dir/elxReducedDimensionBSplineInterpolator.cxx.o.d -o CMakeFiles/ReducedDimensionBSplineInterpolator.dir/elxReducedDimensionBSplineInterpolator.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators/ReducedDimensionBSplineInterpolator/elxReducedDimensionBSplineInterpolator.cxx [ 46%] Linking CXX static library ../../../bin/libLinearInterpolator-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Interpolators/LinearInterpolator && /usr/bin/cmake -P CMakeFiles/LinearInterpolator.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Interpolators/LinearInterpolator && /usr/bin/cmake -E cmake_link_script CMakeFiles/LinearInterpolator.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libLinearInterpolator-5.0.a CMakeFiles/LinearInterpolator.dir/elxLinearInterpolator.cxx.o [ 47%] Linking CXX static library ../../../bin/libRandomSamplerSparseMask-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ImageSamplers/RandomSparseMask && /usr/bin/cmake -P CMakeFiles/RandomSamplerSparseMask.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ImageSamplers/RandomSparseMask && /usr/bin/cmake -E cmake_link_script CMakeFiles/RandomSamplerSparseMask.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libRandomSamplerSparseMask-5.0.a CMakeFiles/RandomSamplerSparseMask.dir/elxRandomSamplerSparseMask.cxx.o /usr/bin/ranlib ../../../bin/libLinearInterpolator-5.0.a make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 47%] Built target LinearInterpolator make -f Components/Metrics/AdvancedMattesMutualInformation/CMakeFiles/AdvancedMattesMutualInformationMetric.dir/build.make Components/Metrics/AdvancedMattesMutualInformation/CMakeFiles/AdvancedMattesMutualInformationMetric.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/AdvancedMattesMutualInformation /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/AdvancedMattesMutualInformation /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/AdvancedMattesMutualInformation/CMakeFiles/AdvancedMattesMutualInformationMetric.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Metrics/AdvancedMattesMutualInformation/CMakeFiles/AdvancedMattesMutualInformationMetric.dir/build.make Components/Metrics/AdvancedMattesMutualInformation/CMakeFiles/AdvancedMattesMutualInformationMetric.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 47%] Building CXX object Components/Metrics/AdvancedMattesMutualInformation/CMakeFiles/AdvancedMattesMutualInformationMetric.dir/elxAdvancedMattesMutualInformationMetric.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/AdvancedMattesMutualInformation && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Metrics/AdvancedMattesMutualInformation/CMakeFiles/AdvancedMattesMutualInformationMetric.dir/elxAdvancedMattesMutualInformationMetric.cxx.o -MF CMakeFiles/AdvancedMattesMutualInformationMetric.dir/elxAdvancedMattesMutualInformationMetric.cxx.o.d -o CMakeFiles/AdvancedMattesMutualInformationMetric.dir/elxAdvancedMattesMutualInformationMetric.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/AdvancedMattesMutualInformation/elxAdvancedMattesMutualInformationMetric.cxx /usr/bin/ranlib ../../../bin/libRandomSamplerSparseMask-5.0.a [ 47%] Linking CXX static library ../../../bin/libBSplineInterpolator-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Interpolators/BSplineInterpolator && /usr/bin/cmake -P CMakeFiles/BSplineInterpolator.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Interpolators/BSplineInterpolator && /usr/bin/cmake -E cmake_link_script CMakeFiles/BSplineInterpolator.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libBSplineInterpolator-5.0.a CMakeFiles/BSplineInterpolator.dir/elxBSplineInterpolator.cxx.o make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 47%] Built target RandomSamplerSparseMask make -f Components/Metrics/AdvancedMeanSquares/CMakeFiles/AdvancedMeanSquaresMetric.dir/build.make Components/Metrics/AdvancedMeanSquares/CMakeFiles/AdvancedMeanSquaresMetric.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/AdvancedMeanSquares /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/AdvancedMeanSquares /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/AdvancedMeanSquares/CMakeFiles/AdvancedMeanSquaresMetric.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Metrics/AdvancedMeanSquares/CMakeFiles/AdvancedMeanSquaresMetric.dir/build.make Components/Metrics/AdvancedMeanSquares/CMakeFiles/AdvancedMeanSquaresMetric.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 47%] Building CXX object Components/Metrics/AdvancedMeanSquares/CMakeFiles/AdvancedMeanSquaresMetric.dir/elxAdvancedMeanSquaresMetric.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/AdvancedMeanSquares && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Metrics/AdvancedMeanSquares/CMakeFiles/AdvancedMeanSquaresMetric.dir/elxAdvancedMeanSquaresMetric.cxx.o -MF CMakeFiles/AdvancedMeanSquaresMetric.dir/elxAdvancedMeanSquaresMetric.cxx.o.d -o CMakeFiles/AdvancedMeanSquaresMetric.dir/elxAdvancedMeanSquaresMetric.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/AdvancedMeanSquares/elxAdvancedMeanSquaresMetric.cxx /usr/bin/ranlib ../../../bin/libBSplineInterpolator-5.0.a [ 47%] Linking CXX static library ../../../bin/libReducedDimensionBSplineInterpolator-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Interpolators/ReducedDimensionBSplineInterpolator && /usr/bin/cmake -P CMakeFiles/ReducedDimensionBSplineInterpolator.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Interpolators/ReducedDimensionBSplineInterpolator && /usr/bin/cmake -E cmake_link_script CMakeFiles/ReducedDimensionBSplineInterpolator.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libReducedDimensionBSplineInterpolator-5.0.a CMakeFiles/ReducedDimensionBSplineInterpolator.dir/elxReducedDimensionBSplineInterpolator.cxx.o /usr/bin/ranlib ../../../bin/libReducedDimensionBSplineInterpolator-5.0.a make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 47%] Built target BSplineInterpolator make -f Components/Metrics/AdvancedNormalizedCorrelation/CMakeFiles/AdvancedNormalizedCorrelationMetric.dir/build.make Components/Metrics/AdvancedNormalizedCorrelation/CMakeFiles/AdvancedNormalizedCorrelationMetric.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/AdvancedNormalizedCorrelation /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/AdvancedNormalizedCorrelation /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/AdvancedNormalizedCorrelation/CMakeFiles/AdvancedNormalizedCorrelationMetric.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Metrics/AdvancedNormalizedCorrelation/CMakeFiles/AdvancedNormalizedCorrelationMetric.dir/build.make Components/Metrics/AdvancedNormalizedCorrelation/CMakeFiles/AdvancedNormalizedCorrelationMetric.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 47%] Building CXX object Components/Metrics/AdvancedNormalizedCorrelation/CMakeFiles/AdvancedNormalizedCorrelationMetric.dir/elxAdvancedNormalizedCorrelationMetric.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/AdvancedNormalizedCorrelation && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Metrics/AdvancedNormalizedCorrelation/CMakeFiles/AdvancedNormalizedCorrelationMetric.dir/elxAdvancedNormalizedCorrelationMetric.cxx.o -MF CMakeFiles/AdvancedNormalizedCorrelationMetric.dir/elxAdvancedNormalizedCorrelationMetric.cxx.o.d -o CMakeFiles/AdvancedNormalizedCorrelationMetric.dir/elxAdvancedNormalizedCorrelationMetric.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/AdvancedNormalizedCorrelation/elxAdvancedNormalizedCorrelationMetric.cxx make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 47%] Built target ReducedDimensionBSplineInterpolator make -f Components/Metrics/BendingEnergyPenalty/CMakeFiles/TransformBendingEnergyPenalty.dir/build.make Components/Metrics/BendingEnergyPenalty/CMakeFiles/TransformBendingEnergyPenalty.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/BendingEnergyPenalty /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/BendingEnergyPenalty /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/BendingEnergyPenalty/CMakeFiles/TransformBendingEnergyPenalty.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Metrics/BendingEnergyPenalty/CMakeFiles/TransformBendingEnergyPenalty.dir/build.make Components/Metrics/BendingEnergyPenalty/CMakeFiles/TransformBendingEnergyPenalty.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 47%] Building CXX object Components/Metrics/BendingEnergyPenalty/CMakeFiles/TransformBendingEnergyPenalty.dir/elxTransformBendingEnergyPenaltyTerm.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/BendingEnergyPenalty && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Metrics/BendingEnergyPenalty/CMakeFiles/TransformBendingEnergyPenalty.dir/elxTransformBendingEnergyPenaltyTerm.cxx.o -MF CMakeFiles/TransformBendingEnergyPenalty.dir/elxTransformBendingEnergyPenaltyTerm.cxx.o.d -o CMakeFiles/TransformBendingEnergyPenalty.dir/elxTransformBendingEnergyPenaltyTerm.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/BendingEnergyPenalty/elxTransformBendingEnergyPenaltyTerm.cxx [ 47%] Linking CXX static library ../../../bin/libAdvancedNormalizedCorrelationMetric-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/AdvancedNormalizedCorrelation && /usr/bin/cmake -P CMakeFiles/AdvancedNormalizedCorrelationMetric.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/AdvancedNormalizedCorrelation && /usr/bin/cmake -E cmake_link_script CMakeFiles/AdvancedNormalizedCorrelationMetric.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libAdvancedNormalizedCorrelationMetric-5.0.a CMakeFiles/AdvancedNormalizedCorrelationMetric.dir/elxAdvancedNormalizedCorrelationMetric.cxx.o [ 47%] Linking CXX static library ../../../bin/libTransformBendingEnergyPenalty-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/BendingEnergyPenalty && /usr/bin/cmake -P CMakeFiles/TransformBendingEnergyPenalty.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/BendingEnergyPenalty && /usr/bin/cmake -E cmake_link_script CMakeFiles/TransformBendingEnergyPenalty.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libTransformBendingEnergyPenalty-5.0.a CMakeFiles/TransformBendingEnergyPenalty.dir/elxTransformBendingEnergyPenaltyTerm.cxx.o [ 48%] Linking CXX static library ../../../bin/libAdvancedMeanSquaresMetric-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/AdvancedMeanSquares && /usr/bin/cmake -P CMakeFiles/AdvancedMeanSquaresMetric.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/AdvancedMeanSquares && /usr/bin/cmake -E cmake_link_script CMakeFiles/AdvancedMeanSquaresMetric.dir/link.txt --verbose=1 [ 49%] Linking CXX static library ../../../bin/libAdvancedMattesMutualInformationMetric-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/AdvancedMattesMutualInformation && /usr/bin/cmake -P CMakeFiles/AdvancedMattesMutualInformationMetric.dir/cmake_clean_target.cmake /usr/bin/ar qc ../../../bin/libAdvancedMeanSquaresMetric-5.0.a CMakeFiles/AdvancedMeanSquaresMetric.dir/elxAdvancedMeanSquaresMetric.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/AdvancedMattesMutualInformation && /usr/bin/cmake -E cmake_link_script CMakeFiles/AdvancedMattesMutualInformationMetric.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libAdvancedMattesMutualInformationMetric-5.0.a CMakeFiles/AdvancedMattesMutualInformationMetric.dir/elxAdvancedMattesMutualInformationMetric.cxx.o /usr/bin/ranlib ../../../bin/libTransformBendingEnergyPenalty-5.0.a /usr/bin/ranlib ../../../bin/libAdvancedNormalizedCorrelationMetric-5.0.a /usr/bin/ranlib ../../../bin/libAdvancedMattesMutualInformationMetric-5.0.a /usr/bin/ranlib ../../../bin/libAdvancedMeanSquaresMetric-5.0.a make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 49%] Built target AdvancedNormalizedCorrelationMetric make -f Components/Metrics/CorrespondingPointsEuclideanDistanceMetric/CMakeFiles/CorrespondingPointsEuclideanDistanceMetric.dir/build.make Components/Metrics/CorrespondingPointsEuclideanDistanceMetric/CMakeFiles/CorrespondingPointsEuclideanDistanceMetric.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/CorrespondingPointsEuclideanDistanceMetric /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/CorrespondingPointsEuclideanDistanceMetric /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/CorrespondingPointsEuclideanDistanceMetric/CMakeFiles/CorrespondingPointsEuclideanDistanceMetric.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Metrics/CorrespondingPointsEuclideanDistanceMetric/CMakeFiles/CorrespondingPointsEuclideanDistanceMetric.dir/build.make Components/Metrics/CorrespondingPointsEuclideanDistanceMetric/CMakeFiles/CorrespondingPointsEuclideanDistanceMetric.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 49%] Building CXX object Components/Metrics/CorrespondingPointsEuclideanDistanceMetric/CMakeFiles/CorrespondingPointsEuclideanDistanceMetric.dir/elxCorrespondingPointsEuclideanDistanceMetric.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/CorrespondingPointsEuclideanDistanceMetric && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Metrics/CorrespondingPointsEuclideanDistanceMetric/CMakeFiles/CorrespondingPointsEuclideanDistanceMetric.dir/elxCorrespondingPointsEuclideanDistanceMetric.cxx.o -MF CMakeFiles/CorrespondingPointsEuclideanDistanceMetric.dir/elxCorrespondingPointsEuclideanDistanceMetric.cxx.o.d -o CMakeFiles/CorrespondingPointsEuclideanDistanceMetric.dir/elxCorrespondingPointsEuclideanDistanceMetric.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/CorrespondingPointsEuclideanDistanceMetric/elxCorrespondingPointsEuclideanDistanceMetric.cxx make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 49%] Built target AdvancedMattesMutualInformationMetric make -f Components/Metrics/DistancePreservingRigidityPenalty/CMakeFiles/DistancePreservingRigidityPenalty.dir/build.make Components/Metrics/DistancePreservingRigidityPenalty/CMakeFiles/DistancePreservingRigidityPenalty.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/DistancePreservingRigidityPenalty /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/DistancePreservingRigidityPenalty /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/DistancePreservingRigidityPenalty/CMakeFiles/DistancePreservingRigidityPenalty.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Metrics/DistancePreservingRigidityPenalty/CMakeFiles/DistancePreservingRigidityPenalty.dir/build.make Components/Metrics/DistancePreservingRigidityPenalty/CMakeFiles/DistancePreservingRigidityPenalty.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 50%] Building CXX object Components/Metrics/DistancePreservingRigidityPenalty/CMakeFiles/DistancePreservingRigidityPenalty.dir/elxDistancePreservingRigidityPenaltyTerm.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/DistancePreservingRigidityPenalty && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Metrics/DistancePreservingRigidityPenalty/CMakeFiles/DistancePreservingRigidityPenalty.dir/elxDistancePreservingRigidityPenaltyTerm.cxx.o -MF CMakeFiles/DistancePreservingRigidityPenalty.dir/elxDistancePreservingRigidityPenaltyTerm.cxx.o.d -o CMakeFiles/DistancePreservingRigidityPenalty.dir/elxDistancePreservingRigidityPenaltyTerm.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/DistancePreservingRigidityPenalty/elxDistancePreservingRigidityPenaltyTerm.cxx make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 50%] Built target AdvancedMeanSquaresMetric make -f Components/Metrics/KNNGraphAlphaMutualInformation/CMakeFiles/KNNGraphAlphaMutualInformationMetric.dir/build.make Components/Metrics/KNNGraphAlphaMutualInformation/CMakeFiles/KNNGraphAlphaMutualInformationMetric.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/KNNGraphAlphaMutualInformation /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/KNNGraphAlphaMutualInformation/CMakeFiles/KNNGraphAlphaMutualInformationMetric.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Metrics/KNNGraphAlphaMutualInformation/CMakeFiles/KNNGraphAlphaMutualInformationMetric.dir/build.make Components/Metrics/KNNGraphAlphaMutualInformation/CMakeFiles/KNNGraphAlphaMutualInformationMetric.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 50%] Building CXX object Components/Metrics/KNNGraphAlphaMutualInformation/CMakeFiles/KNNGraphAlphaMutualInformationMetric.dir/elxKNNGraphAlphaMutualInformationMetric.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/KNNGraphAlphaMutualInformation && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Metrics/KNNGraphAlphaMutualInformation/CMakeFiles/KNNGraphAlphaMutualInformationMetric.dir/elxKNNGraphAlphaMutualInformationMetric.cxx.o -MF CMakeFiles/KNNGraphAlphaMutualInformationMetric.dir/elxKNNGraphAlphaMutualInformationMetric.cxx.o.d -o CMakeFiles/KNNGraphAlphaMutualInformationMetric.dir/elxKNNGraphAlphaMutualInformationMetric.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/elxKNNGraphAlphaMutualInformationMetric.cxx make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 50%] Built target TransformBendingEnergyPenalty make -f Components/Metrics/NormalizedMutualInformation/CMakeFiles/NormalizedMutualInformationMetric.dir/build.make Components/Metrics/NormalizedMutualInformation/CMakeFiles/NormalizedMutualInformationMetric.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/NormalizedMutualInformation /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/NormalizedMutualInformation /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/NormalizedMutualInformation/CMakeFiles/NormalizedMutualInformationMetric.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Metrics/NormalizedMutualInformation/CMakeFiles/NormalizedMutualInformationMetric.dir/build.make Components/Metrics/NormalizedMutualInformation/CMakeFiles/NormalizedMutualInformationMetric.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 50%] Building CXX object Components/Metrics/NormalizedMutualInformation/CMakeFiles/NormalizedMutualInformationMetric.dir/elxNormalizedMutualInformationMetric.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/NormalizedMutualInformation && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Metrics/NormalizedMutualInformation/CMakeFiles/NormalizedMutualInformationMetric.dir/elxNormalizedMutualInformationMetric.cxx.o -MF CMakeFiles/NormalizedMutualInformationMetric.dir/elxNormalizedMutualInformationMetric.cxx.o.d -o CMakeFiles/NormalizedMutualInformationMetric.dir/elxNormalizedMutualInformationMetric.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/NormalizedMutualInformation/elxNormalizedMutualInformationMetric.cxx [ 51%] Linking CXX static library ../../../bin/libCorrespondingPointsEuclideanDistanceMetric-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/CorrespondingPointsEuclideanDistanceMetric && /usr/bin/cmake -P CMakeFiles/CorrespondingPointsEuclideanDistanceMetric.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/CorrespondingPointsEuclideanDistanceMetric && /usr/bin/cmake -E cmake_link_script CMakeFiles/CorrespondingPointsEuclideanDistanceMetric.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libCorrespondingPointsEuclideanDistanceMetric-5.0.a CMakeFiles/CorrespondingPointsEuclideanDistanceMetric.dir/elxCorrespondingPointsEuclideanDistanceMetric.cxx.o /usr/bin/ranlib ../../../bin/libCorrespondingPointsEuclideanDistanceMetric-5.0.a make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 51%] Built target CorrespondingPointsEuclideanDistanceMetric make -f Components/Metrics/PCAMetric/CMakeFiles/PCAMetric.dir/build.make Components/Metrics/PCAMetric/CMakeFiles/PCAMetric.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/PCAMetric /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/PCAMetric /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/PCAMetric/CMakeFiles/PCAMetric.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Metrics/PCAMetric/CMakeFiles/PCAMetric.dir/build.make Components/Metrics/PCAMetric/CMakeFiles/PCAMetric.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 51%] Building CXX object Components/Metrics/PCAMetric/CMakeFiles/PCAMetric.dir/elxPCAMetric.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/PCAMetric && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Metrics/PCAMetric/CMakeFiles/PCAMetric.dir/elxPCAMetric.cxx.o -MF CMakeFiles/PCAMetric.dir/elxPCAMetric.cxx.o.d -o CMakeFiles/PCAMetric.dir/elxPCAMetric.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/PCAMetric/elxPCAMetric.cxx [ 52%] Linking CXX static library ../../../bin/libKNNGraphAlphaMutualInformationMetric-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/KNNGraphAlphaMutualInformation && /usr/bin/cmake -P CMakeFiles/KNNGraphAlphaMutualInformationMetric.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/KNNGraphAlphaMutualInformation && /usr/bin/cmake -E cmake_link_script CMakeFiles/KNNGraphAlphaMutualInformationMetric.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libKNNGraphAlphaMutualInformationMetric-5.0.a CMakeFiles/KNNGraphAlphaMutualInformationMetric.dir/elxKNNGraphAlphaMutualInformationMetric.cxx.o [ 53%] Linking CXX static library ../../../bin/libNormalizedMutualInformationMetric-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/NormalizedMutualInformation && /usr/bin/cmake -P CMakeFiles/NormalizedMutualInformationMetric.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/NormalizedMutualInformation && /usr/bin/cmake -E cmake_link_script CMakeFiles/NormalizedMutualInformationMetric.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libNormalizedMutualInformationMetric-5.0.a CMakeFiles/NormalizedMutualInformationMetric.dir/elxNormalizedMutualInformationMetric.cxx.o [ 53%] Linking CXX static library ../../../bin/libDistancePreservingRigidityPenalty-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/DistancePreservingRigidityPenalty && /usr/bin/cmake -P CMakeFiles/DistancePreservingRigidityPenalty.dir/cmake_clean_target.cmake [ 53%] Linking CXX static library ../../../bin/libPCAMetric-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/PCAMetric && /usr/bin/cmake -P CMakeFiles/PCAMetric.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/DistancePreservingRigidityPenalty && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistancePreservingRigidityPenalty.dir/link.txt --verbose=1 cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/PCAMetric && /usr/bin/cmake -E cmake_link_script CMakeFiles/PCAMetric.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libPCAMetric-5.0.a CMakeFiles/PCAMetric.dir/elxPCAMetric.cxx.o /usr/bin/ar qc ../../../bin/libDistancePreservingRigidityPenalty-5.0.a CMakeFiles/DistancePreservingRigidityPenalty.dir/elxDistancePreservingRigidityPenaltyTerm.cxx.o /usr/bin/ranlib ../../../bin/libPCAMetric-5.0.a /usr/bin/ranlib ../../../bin/libNormalizedMutualInformationMetric-5.0.a /usr/bin/ranlib ../../../bin/libKNNGraphAlphaMutualInformationMetric-5.0.a /usr/bin/ranlib ../../../bin/libDistancePreservingRigidityPenalty-5.0.a make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 53%] Built target DistancePreservingRigidityPenalty make -f Components/Metrics/PCAMetric2/CMakeFiles/PCAMetric2.dir/build.make Components/Metrics/PCAMetric2/CMakeFiles/PCAMetric2.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/PCAMetric2 /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/PCAMetric2 /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/PCAMetric2/CMakeFiles/PCAMetric2.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Metrics/PCAMetric2/CMakeFiles/PCAMetric2.dir/build.make Components/Metrics/PCAMetric2/CMakeFiles/PCAMetric2.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 54%] Building CXX object Components/Metrics/PCAMetric2/CMakeFiles/PCAMetric2.dir/elxPCAMetric2.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/PCAMetric2 && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Metrics/PCAMetric2/CMakeFiles/PCAMetric2.dir/elxPCAMetric2.cxx.o -MF CMakeFiles/PCAMetric2.dir/elxPCAMetric2.cxx.o.d -o CMakeFiles/PCAMetric2.dir/elxPCAMetric2.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/PCAMetric2/elxPCAMetric2.cxx make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 54%] Built target PCAMetric make -f Components/Metrics/RigidityPenalty/CMakeFiles/TransformRigidityPenalty.dir/build.make Components/Metrics/RigidityPenalty/CMakeFiles/TransformRigidityPenalty.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/RigidityPenalty /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/RigidityPenalty /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/RigidityPenalty/CMakeFiles/TransformRigidityPenalty.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Metrics/RigidityPenalty/CMakeFiles/TransformRigidityPenalty.dir/build.make Components/Metrics/RigidityPenalty/CMakeFiles/TransformRigidityPenalty.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 55%] Building CXX object Components/Metrics/RigidityPenalty/CMakeFiles/TransformRigidityPenalty.dir/elxTransformRigidityPenaltyTerm.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/RigidityPenalty && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Metrics/RigidityPenalty/CMakeFiles/TransformRigidityPenalty.dir/elxTransformRigidityPenaltyTerm.cxx.o -MF CMakeFiles/TransformRigidityPenalty.dir/elxTransformRigidityPenaltyTerm.cxx.o.d -o CMakeFiles/TransformRigidityPenalty.dir/elxTransformRigidityPenaltyTerm.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/RigidityPenalty/elxTransformRigidityPenaltyTerm.cxx make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 55%] Built target NormalizedMutualInformationMetric make -f Components/Metrics/SumOfPairwiseCorrelationsMetric/CMakeFiles/SumOfPairwiseCorrelationCoefficientsMetric.dir/build.make Components/Metrics/SumOfPairwiseCorrelationsMetric/CMakeFiles/SumOfPairwiseCorrelationCoefficientsMetric.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/SumOfPairwiseCorrelationsMetric /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/SumOfPairwiseCorrelationsMetric /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/SumOfPairwiseCorrelationsMetric/CMakeFiles/SumOfPairwiseCorrelationCoefficientsMetric.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Metrics/SumOfPairwiseCorrelationsMetric/CMakeFiles/SumOfPairwiseCorrelationCoefficientsMetric.dir/build.make Components/Metrics/SumOfPairwiseCorrelationsMetric/CMakeFiles/SumOfPairwiseCorrelationCoefficientsMetric.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 55%] Building CXX object Components/Metrics/SumOfPairwiseCorrelationsMetric/CMakeFiles/SumOfPairwiseCorrelationCoefficientsMetric.dir/elxSumOfPairwiseCorrelationCoefficientsMetric.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/SumOfPairwiseCorrelationsMetric && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Metrics/SumOfPairwiseCorrelationsMetric/CMakeFiles/SumOfPairwiseCorrelationCoefficientsMetric.dir/elxSumOfPairwiseCorrelationCoefficientsMetric.cxx.o -MF CMakeFiles/SumOfPairwiseCorrelationCoefficientsMetric.dir/elxSumOfPairwiseCorrelationCoefficientsMetric.cxx.o.d -o CMakeFiles/SumOfPairwiseCorrelationCoefficientsMetric.dir/elxSumOfPairwiseCorrelationCoefficientsMetric.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/SumOfPairwiseCorrelationsMetric/elxSumOfPairwiseCorrelationCoefficientsMetric.cxx make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 55%] Built target KNNGraphAlphaMutualInformationMetric make -f Components/Metrics/SumSquaredTissueVolumeDifferenceMetric/CMakeFiles/SumSquaredTissueVolumeDifferenceMetric.dir/build.make Components/Metrics/SumSquaredTissueVolumeDifferenceMetric/CMakeFiles/SumSquaredTissueVolumeDifferenceMetric.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/SumSquaredTissueVolumeDifferenceMetric /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/SumSquaredTissueVolumeDifferenceMetric /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/SumSquaredTissueVolumeDifferenceMetric/CMakeFiles/SumSquaredTissueVolumeDifferenceMetric.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Metrics/SumSquaredTissueVolumeDifferenceMetric/CMakeFiles/SumSquaredTissueVolumeDifferenceMetric.dir/build.make Components/Metrics/SumSquaredTissueVolumeDifferenceMetric/CMakeFiles/SumSquaredTissueVolumeDifferenceMetric.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 55%] Building CXX object Components/Metrics/SumSquaredTissueVolumeDifferenceMetric/CMakeFiles/SumSquaredTissueVolumeDifferenceMetric.dir/elxSumSquaredTissueVolumeDifferenceMetric.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/SumSquaredTissueVolumeDifferenceMetric && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Metrics/SumSquaredTissueVolumeDifferenceMetric/CMakeFiles/SumSquaredTissueVolumeDifferenceMetric.dir/elxSumSquaredTissueVolumeDifferenceMetric.cxx.o -MF CMakeFiles/SumSquaredTissueVolumeDifferenceMetric.dir/elxSumSquaredTissueVolumeDifferenceMetric.cxx.o.d -o CMakeFiles/SumSquaredTissueVolumeDifferenceMetric.dir/elxSumSquaredTissueVolumeDifferenceMetric.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/SumSquaredTissueVolumeDifferenceMetric/elxSumSquaredTissueVolumeDifferenceMetric.cxx [ 55%] Linking CXX static library ../../../bin/libPCAMetric2-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/PCAMetric2 && /usr/bin/cmake -P CMakeFiles/PCAMetric2.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/PCAMetric2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/PCAMetric2.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libPCAMetric2-5.0.a CMakeFiles/PCAMetric2.dir/elxPCAMetric2.cxx.o [ 56%] Linking CXX static library ../../../bin/libSumOfPairwiseCorrelationCoefficientsMetric-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/SumOfPairwiseCorrelationsMetric && /usr/bin/cmake -P CMakeFiles/SumOfPairwiseCorrelationCoefficientsMetric.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/SumOfPairwiseCorrelationsMetric && /usr/bin/cmake -E cmake_link_script CMakeFiles/SumOfPairwiseCorrelationCoefficientsMetric.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libSumOfPairwiseCorrelationCoefficientsMetric-5.0.a CMakeFiles/SumOfPairwiseCorrelationCoefficientsMetric.dir/elxSumOfPairwiseCorrelationCoefficientsMetric.cxx.o [ 57%] Linking CXX static library ../../../bin/libSumSquaredTissueVolumeDifferenceMetric-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/SumSquaredTissueVolumeDifferenceMetric && /usr/bin/cmake -P CMakeFiles/SumSquaredTissueVolumeDifferenceMetric.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/SumSquaredTissueVolumeDifferenceMetric && /usr/bin/cmake -E cmake_link_script CMakeFiles/SumSquaredTissueVolumeDifferenceMetric.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libSumSquaredTissueVolumeDifferenceMetric-5.0.a CMakeFiles/SumSquaredTissueVolumeDifferenceMetric.dir/elxSumSquaredTissueVolumeDifferenceMetric.cxx.o /usr/bin/ranlib ../../../bin/libPCAMetric2-5.0.a [ 57%] Linking CXX static library ../../../bin/libTransformRigidityPenalty-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/RigidityPenalty && /usr/bin/cmake -P CMakeFiles/TransformRigidityPenalty.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/RigidityPenalty && /usr/bin/cmake -E cmake_link_script CMakeFiles/TransformRigidityPenalty.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libTransformRigidityPenalty-5.0.a CMakeFiles/TransformRigidityPenalty.dir/elxTransformRigidityPenaltyTerm.cxx.o /usr/bin/ranlib ../../../bin/libSumOfPairwiseCorrelationCoefficientsMetric-5.0.a /usr/bin/ranlib ../../../bin/libSumSquaredTissueVolumeDifferenceMetric-5.0.a make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 57%] Built target PCAMetric2 make -f Components/Metrics/VarianceOverLastDimension/CMakeFiles/VarianceOverLastDimensionMetric.dir/build.make Components/Metrics/VarianceOverLastDimension/CMakeFiles/VarianceOverLastDimensionMetric.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/VarianceOverLastDimension /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/VarianceOverLastDimension /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/VarianceOverLastDimension/CMakeFiles/VarianceOverLastDimensionMetric.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Metrics/VarianceOverLastDimension/CMakeFiles/VarianceOverLastDimensionMetric.dir/build.make Components/Metrics/VarianceOverLastDimension/CMakeFiles/VarianceOverLastDimensionMetric.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 57%] Building CXX object Components/Metrics/VarianceOverLastDimension/CMakeFiles/VarianceOverLastDimensionMetric.dir/elxVarianceOverLastDimensionMetric.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/VarianceOverLastDimension && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Metrics/VarianceOverLastDimension/CMakeFiles/VarianceOverLastDimensionMetric.dir/elxVarianceOverLastDimensionMetric.cxx.o -MF CMakeFiles/VarianceOverLastDimensionMetric.dir/elxVarianceOverLastDimensionMetric.cxx.o.d -o CMakeFiles/VarianceOverLastDimensionMetric.dir/elxVarianceOverLastDimensionMetric.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/VarianceOverLastDimension/elxVarianceOverLastDimensionMetric.cxx make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 57%] Built target SumOfPairwiseCorrelationCoefficientsMetric make -f Components/MovingImagePyramids/MovingGenericPyramid/CMakeFiles/MovingGenericPyramid.dir/build.make Components/MovingImagePyramids/MovingGenericPyramid/CMakeFiles/MovingGenericPyramid.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids/MovingGenericPyramid /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/MovingImagePyramids/MovingGenericPyramid /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/MovingImagePyramids/MovingGenericPyramid/CMakeFiles/MovingGenericPyramid.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/MovingImagePyramids/MovingGenericPyramid/CMakeFiles/MovingGenericPyramid.dir/build.make Components/MovingImagePyramids/MovingGenericPyramid/CMakeFiles/MovingGenericPyramid.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 58%] Building CXX object Components/MovingImagePyramids/MovingGenericPyramid/CMakeFiles/MovingGenericPyramid.dir/elxMovingGenericPyramid.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/MovingImagePyramids/MovingGenericPyramid && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/MovingImagePyramids/MovingGenericPyramid/CMakeFiles/MovingGenericPyramid.dir/elxMovingGenericPyramid.cxx.o -MF CMakeFiles/MovingGenericPyramid.dir/elxMovingGenericPyramid.cxx.o.d -o CMakeFiles/MovingGenericPyramid.dir/elxMovingGenericPyramid.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids/MovingGenericPyramid/elxMovingGenericPyramid.cxx make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 58%] Built target SumSquaredTissueVolumeDifferenceMetric make -f Components/MovingImagePyramids/MovingRecursivePyramid/CMakeFiles/MovingRecursivePyramid.dir/build.make Components/MovingImagePyramids/MovingRecursivePyramid/CMakeFiles/MovingRecursivePyramid.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids/MovingRecursivePyramid /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/MovingImagePyramids/MovingRecursivePyramid /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/MovingImagePyramids/MovingRecursivePyramid/CMakeFiles/MovingRecursivePyramid.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/MovingImagePyramids/MovingRecursivePyramid/CMakeFiles/MovingRecursivePyramid.dir/build.make Components/MovingImagePyramids/MovingRecursivePyramid/CMakeFiles/MovingRecursivePyramid.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 59%] Building CXX object Components/MovingImagePyramids/MovingRecursivePyramid/CMakeFiles/MovingRecursivePyramid.dir/elxMovingRecursivePyramid.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/MovingImagePyramids/MovingRecursivePyramid && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/MovingImagePyramids/MovingRecursivePyramid/CMakeFiles/MovingRecursivePyramid.dir/elxMovingRecursivePyramid.cxx.o -MF CMakeFiles/MovingRecursivePyramid.dir/elxMovingRecursivePyramid.cxx.o.d -o CMakeFiles/MovingRecursivePyramid.dir/elxMovingRecursivePyramid.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids/MovingRecursivePyramid/elxMovingRecursivePyramid.cxx /usr/bin/ranlib ../../../bin/libTransformRigidityPenalty-5.0.a make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 59%] Built target TransformRigidityPenalty make -f Components/MovingImagePyramids/MovingSmoothingPyramid/CMakeFiles/MovingSmoothingPyramid.dir/build.make Components/MovingImagePyramids/MovingSmoothingPyramid/CMakeFiles/MovingSmoothingPyramid.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids/MovingSmoothingPyramid /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/MovingImagePyramids/MovingSmoothingPyramid /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/MovingImagePyramids/MovingSmoothingPyramid/CMakeFiles/MovingSmoothingPyramid.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/MovingImagePyramids/MovingSmoothingPyramid/CMakeFiles/MovingSmoothingPyramid.dir/build.make Components/MovingImagePyramids/MovingSmoothingPyramid/CMakeFiles/MovingSmoothingPyramid.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 59%] Building CXX object Components/MovingImagePyramids/MovingSmoothingPyramid/CMakeFiles/MovingSmoothingPyramid.dir/elxMovingSmoothingPyramid.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/MovingImagePyramids/MovingSmoothingPyramid && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/MovingImagePyramids/MovingSmoothingPyramid/CMakeFiles/MovingSmoothingPyramid.dir/elxMovingSmoothingPyramid.cxx.o -MF CMakeFiles/MovingSmoothingPyramid.dir/elxMovingSmoothingPyramid.cxx.o.d -o CMakeFiles/MovingSmoothingPyramid.dir/elxMovingSmoothingPyramid.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids/MovingSmoothingPyramid/elxMovingSmoothingPyramid.cxx [ 60%] Linking CXX static library ../../../bin/libVarianceOverLastDimensionMetric-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/VarianceOverLastDimension && /usr/bin/cmake -P CMakeFiles/VarianceOverLastDimensionMetric.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Metrics/VarianceOverLastDimension && /usr/bin/cmake -E cmake_link_script CMakeFiles/VarianceOverLastDimensionMetric.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libVarianceOverLastDimensionMetric-5.0.a CMakeFiles/VarianceOverLastDimensionMetric.dir/elxVarianceOverLastDimensionMetric.cxx.o /usr/bin/ranlib ../../../bin/libVarianceOverLastDimensionMetric-5.0.a [ 60%] Linking CXX static library ../../../bin/libMovingRecursivePyramid-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/MovingImagePyramids/MovingRecursivePyramid && /usr/bin/cmake -P CMakeFiles/MovingRecursivePyramid.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/MovingImagePyramids/MovingRecursivePyramid && /usr/bin/cmake -E cmake_link_script CMakeFiles/MovingRecursivePyramid.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libMovingRecursivePyramid-5.0.a CMakeFiles/MovingRecursivePyramid.dir/elxMovingRecursivePyramid.cxx.o [ 60%] Linking CXX static library ../../../bin/libMovingGenericPyramid-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/MovingImagePyramids/MovingGenericPyramid && /usr/bin/cmake -P CMakeFiles/MovingGenericPyramid.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/MovingImagePyramids/MovingGenericPyramid && /usr/bin/cmake -E cmake_link_script CMakeFiles/MovingGenericPyramid.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libMovingGenericPyramid-5.0.a CMakeFiles/MovingGenericPyramid.dir/elxMovingGenericPyramid.cxx.o make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 60%] Built target VarianceOverLastDimensionMetric make -f Components/Optimizers/AdaGrad/CMakeFiles/AdaGrad.dir/build.make Components/Optimizers/AdaGrad/CMakeFiles/AdaGrad.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/AdaGrad /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/AdaGrad /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/AdaGrad/CMakeFiles/AdaGrad.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Optimizers/AdaGrad/CMakeFiles/AdaGrad.dir/build.make Components/Optimizers/AdaGrad/CMakeFiles/AdaGrad.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 61%] Building CXX object Components/Optimizers/AdaGrad/CMakeFiles/AdaGrad.dir/elxAdaGrad.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/AdaGrad && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Optimizers/AdaGrad/CMakeFiles/AdaGrad.dir/elxAdaGrad.cxx.o -MF CMakeFiles/AdaGrad.dir/elxAdaGrad.cxx.o.d -o 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-I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Optimizers/AdaGrad/CMakeFiles/AdaGrad.dir/itkAdaptiveStepsizeOptimizer.cxx.o -MF CMakeFiles/AdaGrad.dir/itkAdaptiveStepsizeOptimizer.cxx.o.d -o CMakeFiles/AdaGrad.dir/itkAdaptiveStepsizeOptimizer.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/AdaGrad/itkAdaptiveStepsizeOptimizer.cxx /usr/bin/ar qc ../../../bin/libMovingSmoothingPyramid-5.0.a CMakeFiles/MovingSmoothingPyramid.dir/elxMovingSmoothingPyramid.cxx.o /usr/bin/ranlib ../../../bin/libMovingRecursivePyramid-5.0.a [ 63%] Building CXX object Components/Optimizers/AdaGrad/CMakeFiles/AdaGrad.dir/__/StandardGradientDescent/itkStandardGradientDescentOptimizer.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/AdaGrad && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Optimizers/AdaGrad/CMakeFiles/AdaGrad.dir/__/StandardGradientDescent/itkStandardGradientDescentOptimizer.cxx.o -MF CMakeFiles/AdaGrad.dir/__/StandardGradientDescent/itkStandardGradientDescentOptimizer.cxx.o.d -o CMakeFiles/AdaGrad.dir/__/StandardGradientDescent/itkStandardGradientDescentOptimizer.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/StandardGradientDescent/itkStandardGradientDescentOptimizer.cxx [ 63%] Building CXX object Components/Optimizers/AdaGrad/CMakeFiles/AdaGrad.dir/__/StandardGradientDescent/itkGradientDescentOptimizer2.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/AdaGrad && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Optimizers/AdaGrad/CMakeFiles/AdaGrad.dir/__/StandardGradientDescent/itkGradientDescentOptimizer2.cxx.o -MF CMakeFiles/AdaGrad.dir/__/StandardGradientDescent/itkGradientDescentOptimizer2.cxx.o.d -o CMakeFiles/AdaGrad.dir/__/StandardGradientDescent/itkGradientDescentOptimizer2.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/StandardGradientDescent/itkGradientDescentOptimizer2.cxx [ 63%] Linking CXX static library ../../../bin/libAdaGrad-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/AdaGrad && /usr/bin/cmake -P CMakeFiles/AdaGrad.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/AdaGrad && /usr/bin/cmake -E cmake_link_script CMakeFiles/AdaGrad.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libAdaGrad-5.0.a CMakeFiles/AdaGrad.dir/elxAdaGrad.cxx.o CMakeFiles/AdaGrad.dir/itkAdaptiveStepsizeOptimizer.cxx.o CMakeFiles/AdaGrad.dir/__/StandardGradientDescent/itkStandardGradientDescentOptimizer.cxx.o CMakeFiles/AdaGrad.dir/__/StandardGradientDescent/itkGradientDescentOptimizer2.cxx.o /usr/bin/ranlib ../../../bin/libMovingGenericPyramid-5.0.a /usr/bin/ranlib ../../../bin/libAdaGrad-5.0.a make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 63%] Built target AdaGrad make -f Components/Optimizers/AdaptiveStochasticGradientDescent/CMakeFiles/AdaptiveStochasticGradientDescent.dir/build.make Components/Optimizers/AdaptiveStochasticGradientDescent/CMakeFiles/AdaptiveStochasticGradientDescent.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/AdaptiveStochasticGradientDescent /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/AdaptiveStochasticGradientDescent /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/AdaptiveStochasticGradientDescent/CMakeFiles/AdaptiveStochasticGradientDescent.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Optimizers/AdaptiveStochasticGradientDescent/CMakeFiles/AdaptiveStochasticGradientDescent.dir/build.make Components/Optimizers/AdaptiveStochasticGradientDescent/CMakeFiles/AdaptiveStochasticGradientDescent.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 64%] Building CXX object 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-I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Optimizers/AdaptiveStochasticGradientDescent/CMakeFiles/AdaptiveStochasticGradientDescent.dir/elxAdaptiveStochasticGradientDescent.cxx.o -MF CMakeFiles/AdaptiveStochasticGradientDescent.dir/elxAdaptiveStochasticGradientDescent.cxx.o.d -o CMakeFiles/AdaptiveStochasticGradientDescent.dir/elxAdaptiveStochasticGradientDescent.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/AdaptiveStochasticGradientDescent/elxAdaptiveStochasticGradientDescent.cxx make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 64%] Built target MovingRecursivePyramid make -f Components/Optimizers/AdaptiveStochasticLBFGS/CMakeFiles/AdaptiveStochasticLBFGS.dir/build.make Components/Optimizers/AdaptiveStochasticLBFGS/CMakeFiles/AdaptiveStochasticLBFGS.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/AdaptiveStochasticLBFGS /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/AdaptiveStochasticLBFGS /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/AdaptiveStochasticLBFGS/CMakeFiles/AdaptiveStochasticLBFGS.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Optimizers/AdaptiveStochasticLBFGS/CMakeFiles/AdaptiveStochasticLBFGS.dir/build.make Components/Optimizers/AdaptiveStochasticLBFGS/CMakeFiles/AdaptiveStochasticLBFGS.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 65%] Building CXX object Components/Optimizers/AdaptiveStochasticLBFGS/CMakeFiles/AdaptiveStochasticLBFGS.dir/elxAdaptiveStochasticLBFGS.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/AdaptiveStochasticLBFGS && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Optimizers/AdaptiveStochasticLBFGS/CMakeFiles/AdaptiveStochasticLBFGS.dir/elxAdaptiveStochasticLBFGS.cxx.o -MF CMakeFiles/AdaptiveStochasticLBFGS.dir/elxAdaptiveStochasticLBFGS.cxx.o.d -o CMakeFiles/AdaptiveStochasticLBFGS.dir/elxAdaptiveStochasticLBFGS.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/AdaptiveStochasticLBFGS/elxAdaptiveStochasticLBFGS.cxx /usr/bin/ranlib ../../../bin/libMovingSmoothingPyramid-5.0.a make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 65%] Built target MovingGenericPyramid make -f Components/Optimizers/AdaptiveStochasticVarianceReducedGradient/CMakeFiles/AdaptiveStochasticVarianceReducedGradient.dir/build.make Components/Optimizers/AdaptiveStochasticVarianceReducedGradient/CMakeFiles/AdaptiveStochasticVarianceReducedGradient.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/AdaptiveStochasticVarianceReducedGradient /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/AdaptiveStochasticVarianceReducedGradient /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/AdaptiveStochasticVarianceReducedGradient/CMakeFiles/AdaptiveStochasticVarianceReducedGradient.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Optimizers/AdaptiveStochasticVarianceReducedGradient/CMakeFiles/AdaptiveStochasticVarianceReducedGradient.dir/build.make Components/Optimizers/AdaptiveStochasticVarianceReducedGradient/CMakeFiles/AdaptiveStochasticVarianceReducedGradient.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 66%] Building CXX object Components/Optimizers/AdaptiveStochasticVarianceReducedGradient/CMakeFiles/AdaptiveStochasticVarianceReducedGradient.dir/elxAdaptiveStochasticVarianceReducedGradient.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/AdaptiveStochasticVarianceReducedGradient && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Optimizers/AdaptiveStochasticVarianceReducedGradient/CMakeFiles/AdaptiveStochasticVarianceReducedGradient.dir/elxAdaptiveStochasticVarianceReducedGradient.cxx.o -MF CMakeFiles/AdaptiveStochasticVarianceReducedGradient.dir/elxAdaptiveStochasticVarianceReducedGradient.cxx.o.d -o CMakeFiles/AdaptiveStochasticVarianceReducedGradient.dir/elxAdaptiveStochasticVarianceReducedGradient.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/AdaptiveStochasticVarianceReducedGradient/elxAdaptiveStochasticVarianceReducedGradient.cxx [ 66%] Building CXX object Components/Optimizers/AdaptiveStochasticGradientDescent/CMakeFiles/AdaptiveStochasticGradientDescent.dir/itkAdaptiveStochasticGradientDescentOptimizer.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/AdaptiveStochasticGradientDescent && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Optimizers/AdaptiveStochasticGradientDescent/CMakeFiles/AdaptiveStochasticGradientDescent.dir/itkAdaptiveStochasticGradientDescentOptimizer.cxx.o -MF CMakeFiles/AdaptiveStochasticGradientDescent.dir/itkAdaptiveStochasticGradientDescentOptimizer.cxx.o.d -o CMakeFiles/AdaptiveStochasticGradientDescent.dir/itkAdaptiveStochasticGradientDescentOptimizer.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/AdaptiveStochasticGradientDescent/itkAdaptiveStochasticGradientDescentOptimizer.cxx [ 67%] Building CXX object Components/Optimizers/AdaptiveStochasticGradientDescent/CMakeFiles/AdaptiveStochasticGradientDescent.dir/__/StandardGradientDescent/itkStandardGradientDescentOptimizer.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/AdaptiveStochasticGradientDescent && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Optimizers/AdaptiveStochasticGradientDescent/CMakeFiles/AdaptiveStochasticGradientDescent.dir/__/StandardGradientDescent/itkStandardGradientDescentOptimizer.cxx.o -MF CMakeFiles/AdaptiveStochasticGradientDescent.dir/__/StandardGradientDescent/itkStandardGradientDescentOptimizer.cxx.o.d -o CMakeFiles/AdaptiveStochasticGradientDescent.dir/__/StandardGradientDescent/itkStandardGradientDescentOptimizer.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/StandardGradientDescent/itkStandardGradientDescentOptimizer.cxx [ 67%] Building CXX object Components/Optimizers/AdaptiveStochasticGradientDescent/CMakeFiles/AdaptiveStochasticGradientDescent.dir/__/StandardGradientDescent/itkGradientDescentOptimizer2.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/AdaptiveStochasticGradientDescent && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Optimizers/AdaptiveStochasticGradientDescent/CMakeFiles/AdaptiveStochasticGradientDescent.dir/__/StandardGradientDescent/itkGradientDescentOptimizer2.cxx.o -MF CMakeFiles/AdaptiveStochasticGradientDescent.dir/__/StandardGradientDescent/itkGradientDescentOptimizer2.cxx.o.d -o CMakeFiles/AdaptiveStochasticGradientDescent.dir/__/StandardGradientDescent/itkGradientDescentOptimizer2.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/StandardGradientDescent/itkGradientDescentOptimizer2.cxx [ 67%] Linking CXX static library ../../../bin/libAdaptiveStochasticGradientDescent-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/AdaptiveStochasticGradientDescent && /usr/bin/cmake -P CMakeFiles/AdaptiveStochasticGradientDescent.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/AdaptiveStochasticGradientDescent && /usr/bin/cmake -E cmake_link_script CMakeFiles/AdaptiveStochasticGradientDescent.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libAdaptiveStochasticGradientDescent-5.0.a CMakeFiles/AdaptiveStochasticGradientDescent.dir/elxAdaptiveStochasticGradientDescent.cxx.o CMakeFiles/AdaptiveStochasticGradientDescent.dir/itkAdaptiveStochasticGradientDescentOptimizer.cxx.o CMakeFiles/AdaptiveStochasticGradientDescent.dir/__/StandardGradientDescent/itkStandardGradientDescentOptimizer.cxx.o CMakeFiles/AdaptiveStochasticGradientDescent.dir/__/StandardGradientDescent/itkGradientDescentOptimizer2.cxx.o make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 67%] Built target MovingSmoothingPyramid make -f Components/Optimizers/ConjugateGradient/CMakeFiles/ConjugateGradient.dir/build.make Components/Optimizers/ConjugateGradient/CMakeFiles/ConjugateGradient.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/ConjugateGradient /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/ConjugateGradient /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/ConjugateGradient/CMakeFiles/ConjugateGradient.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Optimizers/ConjugateGradient/CMakeFiles/ConjugateGradient.dir/build.make Components/Optimizers/ConjugateGradient/CMakeFiles/ConjugateGradient.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 67%] Building CXX object Components/Optimizers/ConjugateGradient/CMakeFiles/ConjugateGradient.dir/elxConjugateGradient.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/ConjugateGradient && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Optimizers/ConjugateGradient/CMakeFiles/ConjugateGradient.dir/elxConjugateGradient.cxx.o -MF CMakeFiles/ConjugateGradient.dir/elxConjugateGradient.cxx.o.d -o CMakeFiles/ConjugateGradient.dir/elxConjugateGradient.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/ConjugateGradient/elxConjugateGradient.cxx [ 67%] Building CXX object Components/Optimizers/ConjugateGradient/CMakeFiles/ConjugateGradient.dir/itkGenericConjugateGradientOptimizer.cxx.o cd 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-D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Optimizers/ConjugateGradient/CMakeFiles/ConjugateGradient.dir/itkGenericConjugateGradientOptimizer.cxx.o -MF CMakeFiles/ConjugateGradient.dir/itkGenericConjugateGradientOptimizer.cxx.o.d -o CMakeFiles/ConjugateGradient.dir/itkGenericConjugateGradientOptimizer.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/ConjugateGradient/itkGenericConjugateGradientOptimizer.cxx [ 67%] Building CXX object Components/Optimizers/AdaptiveStochasticLBFGS/CMakeFiles/AdaptiveStochasticLBFGS.dir/itkAdaptiveStochasticLBFGSOptimizer.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/AdaptiveStochasticLBFGS && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Optimizers/AdaptiveStochasticLBFGS/CMakeFiles/AdaptiveStochasticLBFGS.dir/itkAdaptiveStochasticLBFGSOptimizer.cxx.o -MF CMakeFiles/AdaptiveStochasticLBFGS.dir/itkAdaptiveStochasticLBFGSOptimizer.cxx.o.d -o CMakeFiles/AdaptiveStochasticLBFGS.dir/itkAdaptiveStochasticLBFGSOptimizer.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/AdaptiveStochasticLBFGS/itkAdaptiveStochasticLBFGSOptimizer.cxx /usr/bin/ranlib ../../../bin/libAdaptiveStochasticGradientDescent-5.0.a [ 68%] Building CXX object Components/Optimizers/AdaptiveStochasticLBFGS/CMakeFiles/AdaptiveStochasticLBFGS.dir/__/StandardStochasticGradientDescent/itkStandardStochasticGradientDescentOptimizer.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/AdaptiveStochasticLBFGS && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Optimizers/AdaptiveStochasticLBFGS/CMakeFiles/AdaptiveStochasticLBFGS.dir/__/StandardStochasticGradientDescent/itkStandardStochasticGradientDescentOptimizer.cxx.o -MF CMakeFiles/AdaptiveStochasticLBFGS.dir/__/StandardStochasticGradientDescent/itkStandardStochasticGradientDescentOptimizer.cxx.o.d -o CMakeFiles/AdaptiveStochasticLBFGS.dir/__/StandardStochasticGradientDescent/itkStandardStochasticGradientDescentOptimizer.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/StandardStochasticGradientDescent/itkStandardStochasticGradientDescentOptimizer.cxx [ 69%] Linking CXX static library ../../../bin/libConjugateGradient-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/ConjugateGradient && /usr/bin/cmake -P CMakeFiles/ConjugateGradient.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/ConjugateGradient && /usr/bin/cmake -E cmake_link_script CMakeFiles/ConjugateGradient.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libConjugateGradient-5.0.a CMakeFiles/ConjugateGradient.dir/elxConjugateGradient.cxx.o CMakeFiles/ConjugateGradient.dir/itkGenericConjugateGradientOptimizer.cxx.o [ 69%] Building CXX object Components/Optimizers/AdaptiveStochasticLBFGS/CMakeFiles/AdaptiveStochasticLBFGS.dir/__/StandardStochasticGradientDescent/itkStochasticGradientDescentOptimizer.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/AdaptiveStochasticLBFGS && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Optimizers/AdaptiveStochasticLBFGS/CMakeFiles/AdaptiveStochasticLBFGS.dir/__/StandardStochasticGradientDescent/itkStochasticGradientDescentOptimizer.cxx.o -MF CMakeFiles/AdaptiveStochasticLBFGS.dir/__/StandardStochasticGradientDescent/itkStochasticGradientDescentOptimizer.cxx.o.d -o CMakeFiles/AdaptiveStochasticLBFGS.dir/__/StandardStochasticGradientDescent/itkStochasticGradientDescentOptimizer.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/StandardStochasticGradientDescent/itkStochasticGradientDescentOptimizer.cxx [ 69%] Linking CXX static library ../../../bin/libAdaptiveStochasticLBFGS-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/AdaptiveStochasticLBFGS && /usr/bin/cmake -P CMakeFiles/AdaptiveStochasticLBFGS.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/AdaptiveStochasticLBFGS && /usr/bin/cmake -E cmake_link_script CMakeFiles/AdaptiveStochasticLBFGS.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libAdaptiveStochasticLBFGS-5.0.a CMakeFiles/AdaptiveStochasticLBFGS.dir/elxAdaptiveStochasticLBFGS.cxx.o CMakeFiles/AdaptiveStochasticLBFGS.dir/itkAdaptiveStochasticLBFGSOptimizer.cxx.o CMakeFiles/AdaptiveStochasticLBFGS.dir/__/StandardStochasticGradientDescent/itkStandardStochasticGradientDescentOptimizer.cxx.o CMakeFiles/AdaptiveStochasticLBFGS.dir/__/StandardStochasticGradientDescent/itkStochasticGradientDescentOptimizer.cxx.o /usr/bin/ranlib ../../../bin/libConjugateGradient-5.0.a make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 69%] Building CXX object Components/Optimizers/AdaptiveStochasticVarianceReducedGradient/CMakeFiles/AdaptiveStochasticVarianceReducedGradient.dir/itkAdaptiveStochasticVarianceReducedGradientOptimizer.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/AdaptiveStochasticVarianceReducedGradient && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Optimizers/AdaptiveStochasticVarianceReducedGradient/CMakeFiles/AdaptiveStochasticVarianceReducedGradient.dir/itkAdaptiveStochasticVarianceReducedGradientOptimizer.cxx.o -MF CMakeFiles/AdaptiveStochasticVarianceReducedGradient.dir/itkAdaptiveStochasticVarianceReducedGradientOptimizer.cxx.o.d -o CMakeFiles/AdaptiveStochasticVarianceReducedGradient.dir/itkAdaptiveStochasticVarianceReducedGradientOptimizer.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/AdaptiveStochasticVarianceReducedGradient/itkAdaptiveStochasticVarianceReducedGradientOptimizer.cxx [ 69%] Built target ConjugateGradient make -f Components/Optimizers/FiniteDifferenceGradientDescent/CMakeFiles/FiniteDifferenceGradientDescent.dir/build.make Components/Optimizers/FiniteDifferenceGradientDescent/CMakeFiles/FiniteDifferenceGradientDescent.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/FiniteDifferenceGradientDescent /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/FiniteDifferenceGradientDescent /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/FiniteDifferenceGradientDescent/CMakeFiles/FiniteDifferenceGradientDescent.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Optimizers/FiniteDifferenceGradientDescent/CMakeFiles/FiniteDifferenceGradientDescent.dir/build.make Components/Optimizers/FiniteDifferenceGradientDescent/CMakeFiles/FiniteDifferenceGradientDescent.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 69%] Building CXX object Components/Optimizers/FiniteDifferenceGradientDescent/CMakeFiles/FiniteDifferenceGradientDescent.dir/elxFiniteDifferenceGradientDescent.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/FiniteDifferenceGradientDescent && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Optimizers/FiniteDifferenceGradientDescent/CMakeFiles/FiniteDifferenceGradientDescent.dir/elxFiniteDifferenceGradientDescent.cxx.o -MF CMakeFiles/FiniteDifferenceGradientDescent.dir/elxFiniteDifferenceGradientDescent.cxx.o.d -o CMakeFiles/FiniteDifferenceGradientDescent.dir/elxFiniteDifferenceGradientDescent.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/FiniteDifferenceGradientDescent/elxFiniteDifferenceGradientDescent.cxx [ 70%] Building CXX object Components/Optimizers/AdaptiveStochasticVarianceReducedGradient/CMakeFiles/AdaptiveStochasticVarianceReducedGradient.dir/itkStandardStochasticVarianceReducedGradientDescentOptimizer.cxx.o cd 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-I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Optimizers/AdaptiveStochasticVarianceReducedGradient/CMakeFiles/AdaptiveStochasticVarianceReducedGradient.dir/itkStandardStochasticVarianceReducedGradientDescentOptimizer.cxx.o -MF CMakeFiles/AdaptiveStochasticVarianceReducedGradient.dir/itkStandardStochasticVarianceReducedGradientDescentOptimizer.cxx.o.d -o CMakeFiles/AdaptiveStochasticVarianceReducedGradient.dir/itkStandardStochasticVarianceReducedGradientDescentOptimizer.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/AdaptiveStochasticVarianceReducedGradient/itkStandardStochasticVarianceReducedGradientDescentOptimizer.cxx make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 70%] Built target AdaptiveStochasticGradientDescent make -f Components/Optimizers/FullSearch/CMakeFiles/FullSearch.dir/build.make Components/Optimizers/FullSearch/CMakeFiles/FullSearch.dir/depend [ 70%] Building CXX object Components/Optimizers/AdaptiveStochasticVarianceReducedGradient/CMakeFiles/AdaptiveStochasticVarianceReducedGradient.dir/itkStochasticVarianceReducedGradientDescentOptimizer.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/AdaptiveStochasticVarianceReducedGradient && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Optimizers/AdaptiveStochasticVarianceReducedGradient/CMakeFiles/AdaptiveStochasticVarianceReducedGradient.dir/itkStochasticVarianceReducedGradientDescentOptimizer.cxx.o -MF CMakeFiles/AdaptiveStochasticVarianceReducedGradient.dir/itkStochasticVarianceReducedGradientDescentOptimizer.cxx.o.d -o CMakeFiles/AdaptiveStochasticVarianceReducedGradient.dir/itkStochasticVarianceReducedGradientDescentOptimizer.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/AdaptiveStochasticVarianceReducedGradient/itkStochasticVarianceReducedGradientDescentOptimizer.cxx make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/FullSearch /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/FullSearch /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/FullSearch/CMakeFiles/FullSearch.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Optimizers/FullSearch/CMakeFiles/FullSearch.dir/build.make Components/Optimizers/FullSearch/CMakeFiles/FullSearch.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 70%] Building CXX object Components/Optimizers/FullSearch/CMakeFiles/FullSearch.dir/elxFullSearchOptimizer.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/FullSearch && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Optimizers/FullSearch/CMakeFiles/FullSearch.dir/elxFullSearchOptimizer.cxx.o -MF CMakeFiles/FullSearch.dir/elxFullSearchOptimizer.cxx.o.d -o CMakeFiles/FullSearch.dir/elxFullSearchOptimizer.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/FullSearch/elxFullSearchOptimizer.cxx [ 70%] Linking CXX static library ../../../bin/libAdaptiveStochasticVarianceReducedGradient-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/AdaptiveStochasticVarianceReducedGradient && /usr/bin/cmake -P CMakeFiles/AdaptiveStochasticVarianceReducedGradient.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/AdaptiveStochasticVarianceReducedGradient && /usr/bin/cmake -E cmake_link_script CMakeFiles/AdaptiveStochasticVarianceReducedGradient.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libAdaptiveStochasticVarianceReducedGradient-5.0.a CMakeFiles/AdaptiveStochasticVarianceReducedGradient.dir/elxAdaptiveStochasticVarianceReducedGradient.cxx.o CMakeFiles/AdaptiveStochasticVarianceReducedGradient.dir/itkAdaptiveStochasticVarianceReducedGradientOptimizer.cxx.o CMakeFiles/AdaptiveStochasticVarianceReducedGradient.dir/itkStandardStochasticVarianceReducedGradientDescentOptimizer.cxx.o CMakeFiles/AdaptiveStochasticVarianceReducedGradient.dir/itkStochasticVarianceReducedGradientDescentOptimizer.cxx.o [ 70%] Building CXX object Components/Optimizers/FiniteDifferenceGradientDescent/CMakeFiles/FiniteDifferenceGradientDescent.dir/itkFiniteDifferenceGradientDescentOptimizer.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/FiniteDifferenceGradientDescent && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Optimizers/FiniteDifferenceGradientDescent/CMakeFiles/FiniteDifferenceGradientDescent.dir/itkFiniteDifferenceGradientDescentOptimizer.cxx.o -MF CMakeFiles/FiniteDifferenceGradientDescent.dir/itkFiniteDifferenceGradientDescentOptimizer.cxx.o.d -o CMakeFiles/FiniteDifferenceGradientDescent.dir/itkFiniteDifferenceGradientDescentOptimizer.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/FiniteDifferenceGradientDescent/itkFiniteDifferenceGradientDescentOptimizer.cxx /usr/bin/ranlib ../../../bin/libAdaptiveStochasticLBFGS-5.0.a [ 71%] Linking CXX static library ../../../bin/libFiniteDifferenceGradientDescent-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/FiniteDifferenceGradientDescent && /usr/bin/cmake -P CMakeFiles/FiniteDifferenceGradientDescent.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/FiniteDifferenceGradientDescent && /usr/bin/cmake -E cmake_link_script CMakeFiles/FiniteDifferenceGradientDescent.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libFiniteDifferenceGradientDescent-5.0.a CMakeFiles/FiniteDifferenceGradientDescent.dir/elxFiniteDifferenceGradientDescent.cxx.o CMakeFiles/FiniteDifferenceGradientDescent.dir/itkFiniteDifferenceGradientDescentOptimizer.cxx.o /usr/bin/ranlib ../../../bin/libFiniteDifferenceGradientDescent-5.0.a make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 71%] Built target FiniteDifferenceGradientDescent [ 72%] Building CXX object Components/Optimizers/FullSearch/CMakeFiles/FullSearch.dir/itkFullSearchOptimizer.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/FullSearch && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Optimizers/FullSearch/CMakeFiles/FullSearch.dir/itkFullSearchOptimizer.cxx.o -MF CMakeFiles/FullSearch.dir/itkFullSearchOptimizer.cxx.o.d -o CMakeFiles/FullSearch.dir/itkFullSearchOptimizer.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/FullSearch/itkFullSearchOptimizer.cxx make -f Components/Optimizers/Powell/CMakeFiles/Powell.dir/build.make Components/Optimizers/Powell/CMakeFiles/Powell.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/Powell /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/Powell /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/Powell/CMakeFiles/Powell.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Optimizers/Powell/CMakeFiles/Powell.dir/build.make Components/Optimizers/Powell/CMakeFiles/Powell.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 73%] Building CXX object Components/Optimizers/Powell/CMakeFiles/Powell.dir/elxPowell.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/Powell && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Optimizers/Powell/CMakeFiles/Powell.dir/elxPowell.cxx.o -MF CMakeFiles/Powell.dir/elxPowell.cxx.o.d -o CMakeFiles/Powell.dir/elxPowell.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/Powell/elxPowell.cxx /usr/bin/ranlib ../../../bin/libAdaptiveStochasticVarianceReducedGradient-5.0.a make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 73%] Built target AdaptiveStochasticLBFGS make -f Components/Optimizers/PreconditionedStochasticGradientDescent/CMakeFiles/PreconditionedStochasticGradientDescent.dir/build.make Components/Optimizers/PreconditionedStochasticGradientDescent/CMakeFiles/PreconditionedStochasticGradientDescent.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/PreconditionedStochasticGradientDescent /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/PreconditionedStochasticGradientDescent /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/PreconditionedStochasticGradientDescent/CMakeFiles/PreconditionedStochasticGradientDescent.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Optimizers/PreconditionedStochasticGradientDescent/CMakeFiles/PreconditionedStochasticGradientDescent.dir/build.make Components/Optimizers/PreconditionedStochasticGradientDescent/CMakeFiles/PreconditionedStochasticGradientDescent.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 73%] Building CXX object Components/Optimizers/PreconditionedStochasticGradientDescent/CMakeFiles/PreconditionedStochasticGradientDescent.dir/elxPreconditionedStochasticGradientDescent.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/PreconditionedStochasticGradientDescent && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Optimizers/PreconditionedStochasticGradientDescent/CMakeFiles/PreconditionedStochasticGradientDescent.dir/elxPreconditionedStochasticGradientDescent.cxx.o -MF CMakeFiles/PreconditionedStochasticGradientDescent.dir/elxPreconditionedStochasticGradientDescent.cxx.o.d -o CMakeFiles/PreconditionedStochasticGradientDescent.dir/elxPreconditionedStochasticGradientDescent.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/PreconditionedStochasticGradientDescent/elxPreconditionedStochasticGradientDescent.cxx [ 73%] Linking CXX static library ../../../bin/libPowell-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/Powell && /usr/bin/cmake -P CMakeFiles/Powell.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/Powell && /usr/bin/cmake -E cmake_link_script CMakeFiles/Powell.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libPowell-5.0.a CMakeFiles/Powell.dir/elxPowell.cxx.o /usr/bin/ranlib ../../../bin/libPowell-5.0.a make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 73%] Built target AdaptiveStochasticVarianceReducedGradient make -f Components/Optimizers/QuasiNewtonLBFGS/CMakeFiles/QuasiNewtonLBFGS.dir/build.make Components/Optimizers/QuasiNewtonLBFGS/CMakeFiles/QuasiNewtonLBFGS.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/QuasiNewtonLBFGS /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/QuasiNewtonLBFGS /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/QuasiNewtonLBFGS/CMakeFiles/QuasiNewtonLBFGS.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Optimizers/QuasiNewtonLBFGS/CMakeFiles/QuasiNewtonLBFGS.dir/build.make Components/Optimizers/QuasiNewtonLBFGS/CMakeFiles/QuasiNewtonLBFGS.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 73%] Building CXX object Components/Optimizers/QuasiNewtonLBFGS/CMakeFiles/QuasiNewtonLBFGS.dir/elxQuasiNewtonLBFGS.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/QuasiNewtonLBFGS && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Optimizers/QuasiNewtonLBFGS/CMakeFiles/QuasiNewtonLBFGS.dir/elxQuasiNewtonLBFGS.cxx.o -MF CMakeFiles/QuasiNewtonLBFGS.dir/elxQuasiNewtonLBFGS.cxx.o.d -o CMakeFiles/QuasiNewtonLBFGS.dir/elxQuasiNewtonLBFGS.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/QuasiNewtonLBFGS/elxQuasiNewtonLBFGS.cxx make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 73%] Built target Powell make -f Components/Optimizers/RegularStepGradientDescent/CMakeFiles/RegularStepGradientDescent.dir/build.make Components/Optimizers/RegularStepGradientDescent/CMakeFiles/RegularStepGradientDescent.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/RegularStepGradientDescent /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/RegularStepGradientDescent /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/RegularStepGradientDescent/CMakeFiles/RegularStepGradientDescent.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Optimizers/RegularStepGradientDescent/CMakeFiles/RegularStepGradientDescent.dir/build.make Components/Optimizers/RegularStepGradientDescent/CMakeFiles/RegularStepGradientDescent.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 73%] Building CXX object Components/Optimizers/RegularStepGradientDescent/CMakeFiles/RegularStepGradientDescent.dir/elxRegularStepGradientDescent.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/RegularStepGradientDescent && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Optimizers/RegularStepGradientDescent/CMakeFiles/RegularStepGradientDescent.dir/elxRegularStepGradientDescent.cxx.o -MF CMakeFiles/RegularStepGradientDescent.dir/elxRegularStepGradientDescent.cxx.o.d -o CMakeFiles/RegularStepGradientDescent.dir/elxRegularStepGradientDescent.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/RegularStepGradientDescent/elxRegularStepGradientDescent.cxx [ 73%] Linking CXX static library ../../../bin/libFullSearch-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/FullSearch && /usr/bin/cmake -P CMakeFiles/FullSearch.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/FullSearch && /usr/bin/cmake -E cmake_link_script CMakeFiles/FullSearch.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libFullSearch-5.0.a CMakeFiles/FullSearch.dir/elxFullSearchOptimizer.cxx.o CMakeFiles/FullSearch.dir/itkFullSearchOptimizer.cxx.o [ 74%] Building CXX object Components/Optimizers/QuasiNewtonLBFGS/CMakeFiles/QuasiNewtonLBFGS.dir/itkQuasiNewtonLBFGSOptimizer.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/QuasiNewtonLBFGS && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Optimizers/QuasiNewtonLBFGS/CMakeFiles/QuasiNewtonLBFGS.dir/itkQuasiNewtonLBFGSOptimizer.cxx.o -MF CMakeFiles/QuasiNewtonLBFGS.dir/itkQuasiNewtonLBFGSOptimizer.cxx.o.d -o CMakeFiles/QuasiNewtonLBFGS.dir/itkQuasiNewtonLBFGSOptimizer.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/QuasiNewtonLBFGS/itkQuasiNewtonLBFGSOptimizer.cxx [ 75%] Linking CXX static library ../../../bin/libRegularStepGradientDescent-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/RegularStepGradientDescent && /usr/bin/cmake -P CMakeFiles/RegularStepGradientDescent.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/RegularStepGradientDescent && /usr/bin/cmake -E cmake_link_script CMakeFiles/RegularStepGradientDescent.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libRegularStepGradientDescent-5.0.a CMakeFiles/RegularStepGradientDescent.dir/elxRegularStepGradientDescent.cxx.o [ 75%] Linking CXX static library ../../../bin/libQuasiNewtonLBFGS-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/QuasiNewtonLBFGS && /usr/bin/cmake -P CMakeFiles/QuasiNewtonLBFGS.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/QuasiNewtonLBFGS && /usr/bin/cmake -E cmake_link_script CMakeFiles/QuasiNewtonLBFGS.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libQuasiNewtonLBFGS-5.0.a CMakeFiles/QuasiNewtonLBFGS.dir/elxQuasiNewtonLBFGS.cxx.o CMakeFiles/QuasiNewtonLBFGS.dir/itkQuasiNewtonLBFGSOptimizer.cxx.o /usr/bin/ranlib ../../../bin/libRegularStepGradientDescent-5.0.a make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 75%] Built target RegularStepGradientDescent make -f Components/Optimizers/StandardGradientDescent/CMakeFiles/StandardGradientDescent.dir/build.make Components/Optimizers/StandardGradientDescent/CMakeFiles/StandardGradientDescent.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/StandardGradientDescent /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/StandardGradientDescent /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/StandardGradientDescent/CMakeFiles/StandardGradientDescent.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Optimizers/StandardGradientDescent/CMakeFiles/StandardGradientDescent.dir/build.make Components/Optimizers/StandardGradientDescent/CMakeFiles/StandardGradientDescent.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 76%] Building CXX object Components/Optimizers/StandardGradientDescent/CMakeFiles/StandardGradientDescent.dir/elxStandardGradientDescent.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/StandardGradientDescent && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Optimizers/StandardGradientDescent/CMakeFiles/StandardGradientDescent.dir/elxStandardGradientDescent.cxx.o -MF CMakeFiles/StandardGradientDescent.dir/elxStandardGradientDescent.cxx.o.d -o CMakeFiles/StandardGradientDescent.dir/elxStandardGradientDescent.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/StandardGradientDescent/elxStandardGradientDescent.cxx /usr/bin/ranlib ../../../bin/libFullSearch-5.0.a /usr/bin/ranlib ../../../bin/libQuasiNewtonLBFGS-5.0.a make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 76%] Built target QuasiNewtonLBFGS [ 76%] Building CXX object Components/Optimizers/StandardGradientDescent/CMakeFiles/StandardGradientDescent.dir/itkStandardGradientDescentOptimizer.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/StandardGradientDescent && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Optimizers/StandardGradientDescent/CMakeFiles/StandardGradientDescent.dir/itkStandardGradientDescentOptimizer.cxx.o -MF CMakeFiles/StandardGradientDescent.dir/itkStandardGradientDescentOptimizer.cxx.o.d -o CMakeFiles/StandardGradientDescent.dir/itkStandardGradientDescentOptimizer.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/StandardGradientDescent/itkStandardGradientDescentOptimizer.cxx [ 77%] Building CXX object Components/Optimizers/StandardGradientDescent/CMakeFiles/StandardGradientDescent.dir/itkGradientDescentOptimizer2.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/StandardGradientDescent && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Optimizers/StandardGradientDescent/CMakeFiles/StandardGradientDescent.dir/itkGradientDescentOptimizer2.cxx.o -MF CMakeFiles/StandardGradientDescent.dir/itkGradientDescentOptimizer2.cxx.o.d -o CMakeFiles/StandardGradientDescent.dir/itkGradientDescentOptimizer2.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/StandardGradientDescent/itkGradientDescentOptimizer2.cxx make -f Components/Registrations/MultiMetricMultiResolutionRegistration/CMakeFiles/MultiMetricMultiResolutionRegistration.dir/build.make Components/Registrations/MultiMetricMultiResolutionRegistration/CMakeFiles/MultiMetricMultiResolutionRegistration.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations/MultiMetricMultiResolutionRegistration /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Registrations/MultiMetricMultiResolutionRegistration /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Registrations/MultiMetricMultiResolutionRegistration/CMakeFiles/MultiMetricMultiResolutionRegistration.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Registrations/MultiMetricMultiResolutionRegistration/CMakeFiles/MultiMetricMultiResolutionRegistration.dir/build.make Components/Registrations/MultiMetricMultiResolutionRegistration/CMakeFiles/MultiMetricMultiResolutionRegistration.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 77%] Building CXX object Components/Registrations/MultiMetricMultiResolutionRegistration/CMakeFiles/MultiMetricMultiResolutionRegistration.dir/elxMultiMetricMultiResolutionRegistration.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Registrations/MultiMetricMultiResolutionRegistration && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Registrations/MultiMetricMultiResolutionRegistration/CMakeFiles/MultiMetricMultiResolutionRegistration.dir/elxMultiMetricMultiResolutionRegistration.cxx.o -MF CMakeFiles/MultiMetricMultiResolutionRegistration.dir/elxMultiMetricMultiResolutionRegistration.cxx.o.d -o CMakeFiles/MultiMetricMultiResolutionRegistration.dir/elxMultiMetricMultiResolutionRegistration.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations/MultiMetricMultiResolutionRegistration/elxMultiMetricMultiResolutionRegistration.cxx [ 77%] Linking CXX static library ../../../bin/libStandardGradientDescent-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/StandardGradientDescent && /usr/bin/cmake -P CMakeFiles/StandardGradientDescent.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/StandardGradientDescent && /usr/bin/cmake -E cmake_link_script CMakeFiles/StandardGradientDescent.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libStandardGradientDescent-5.0.a CMakeFiles/StandardGradientDescent.dir/elxStandardGradientDescent.cxx.o CMakeFiles/StandardGradientDescent.dir/itkStandardGradientDescentOptimizer.cxx.o CMakeFiles/StandardGradientDescent.dir/itkGradientDescentOptimizer2.cxx.o /usr/bin/ranlib ../../../bin/libStandardGradientDescent-5.0.a make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 77%] Built target FullSearch make -f Components/Registrations/MultiResolutionRegistration/CMakeFiles/MultiResolutionRegistration.dir/build.make Components/Registrations/MultiResolutionRegistration/CMakeFiles/MultiResolutionRegistration.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations/MultiResolutionRegistration /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Registrations/MultiResolutionRegistration /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Registrations/MultiResolutionRegistration/CMakeFiles/MultiResolutionRegistration.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Registrations/MultiResolutionRegistration/CMakeFiles/MultiResolutionRegistration.dir/build.make Components/Registrations/MultiResolutionRegistration/CMakeFiles/MultiResolutionRegistration.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 78%] Building CXX object Components/Registrations/MultiResolutionRegistration/CMakeFiles/MultiResolutionRegistration.dir/elxMultiResolutionRegistration.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Registrations/MultiResolutionRegistration && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Registrations/MultiResolutionRegistration/CMakeFiles/MultiResolutionRegistration.dir/elxMultiResolutionRegistration.cxx.o -MF CMakeFiles/MultiResolutionRegistration.dir/elxMultiResolutionRegistration.cxx.o.d -o CMakeFiles/MultiResolutionRegistration.dir/elxMultiResolutionRegistration.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations/MultiResolutionRegistration/elxMultiResolutionRegistration.cxx [ 78%] Built target StandardGradientDescent make -f Components/Registrations/MultiResolutionRegistrationWithFeatures/CMakeFiles/MultiResolutionRegistrationWithFeatures.dir/build.make Components/Registrations/MultiResolutionRegistrationWithFeatures/CMakeFiles/MultiResolutionRegistrationWithFeatures.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations/MultiResolutionRegistrationWithFeatures /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Registrations/MultiResolutionRegistrationWithFeatures /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Registrations/MultiResolutionRegistrationWithFeatures/CMakeFiles/MultiResolutionRegistrationWithFeatures.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Registrations/MultiResolutionRegistrationWithFeatures/CMakeFiles/MultiResolutionRegistrationWithFeatures.dir/build.make Components/Registrations/MultiResolutionRegistrationWithFeatures/CMakeFiles/MultiResolutionRegistrationWithFeatures.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 79%] Building CXX object Components/Registrations/MultiResolutionRegistrationWithFeatures/CMakeFiles/MultiResolutionRegistrationWithFeatures.dir/elxMultiResolutionRegistrationWithFeatures.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Registrations/MultiResolutionRegistrationWithFeatures && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Registrations/MultiResolutionRegistrationWithFeatures/CMakeFiles/MultiResolutionRegistrationWithFeatures.dir/elxMultiResolutionRegistrationWithFeatures.cxx.o -MF CMakeFiles/MultiResolutionRegistrationWithFeatures.dir/elxMultiResolutionRegistrationWithFeatures.cxx.o.d -o CMakeFiles/MultiResolutionRegistrationWithFeatures.dir/elxMultiResolutionRegistrationWithFeatures.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations/MultiResolutionRegistrationWithFeatures/elxMultiResolutionRegistrationWithFeatures.cxx [ 80%] Building CXX object Components/Optimizers/PreconditionedStochasticGradientDescent/CMakeFiles/PreconditionedStochasticGradientDescent.dir/itkPreconditionedASGDOptimizer.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/PreconditionedStochasticGradientDescent && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Optimizers/PreconditionedStochasticGradientDescent/CMakeFiles/PreconditionedStochasticGradientDescent.dir/itkPreconditionedASGDOptimizer.cxx.o -MF CMakeFiles/PreconditionedStochasticGradientDescent.dir/itkPreconditionedASGDOptimizer.cxx.o.d -o CMakeFiles/PreconditionedStochasticGradientDescent.dir/itkPreconditionedASGDOptimizer.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/PreconditionedStochasticGradientDescent/itkPreconditionedASGDOptimizer.cxx [ 80%] Building CXX object Components/Optimizers/PreconditionedStochasticGradientDescent/CMakeFiles/PreconditionedStochasticGradientDescent.dir/__/StandardGradientDescent/itkStandardGradientDescentOptimizer.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/PreconditionedStochasticGradientDescent && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Optimizers/PreconditionedStochasticGradientDescent/CMakeFiles/PreconditionedStochasticGradientDescent.dir/__/StandardGradientDescent/itkStandardGradientDescentOptimizer.cxx.o -MF CMakeFiles/PreconditionedStochasticGradientDescent.dir/__/StandardGradientDescent/itkStandardGradientDescentOptimizer.cxx.o.d -o CMakeFiles/PreconditionedStochasticGradientDescent.dir/__/StandardGradientDescent/itkStandardGradientDescentOptimizer.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/StandardGradientDescent/itkStandardGradientDescentOptimizer.cxx [ 81%] Building CXX object Components/Optimizers/PreconditionedStochasticGradientDescent/CMakeFiles/PreconditionedStochasticGradientDescent.dir/__/StandardGradientDescent/itkGradientDescentOptimizer2.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/PreconditionedStochasticGradientDescent && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Optimizers/PreconditionedStochasticGradientDescent/CMakeFiles/PreconditionedStochasticGradientDescent.dir/__/StandardGradientDescent/itkGradientDescentOptimizer2.cxx.o -MF CMakeFiles/PreconditionedStochasticGradientDescent.dir/__/StandardGradientDescent/itkGradientDescentOptimizer2.cxx.o.d -o CMakeFiles/PreconditionedStochasticGradientDescent.dir/__/StandardGradientDescent/itkGradientDescentOptimizer2.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/StandardGradientDescent/itkGradientDescentOptimizer2.cxx [ 81%] Linking CXX static library ../../../bin/libPreconditionedStochasticGradientDescent-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/PreconditionedStochasticGradientDescent && /usr/bin/cmake -P CMakeFiles/PreconditionedStochasticGradientDescent.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Optimizers/PreconditionedStochasticGradientDescent && /usr/bin/cmake -E cmake_link_script CMakeFiles/PreconditionedStochasticGradientDescent.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libPreconditionedStochasticGradientDescent-5.0.a CMakeFiles/PreconditionedStochasticGradientDescent.dir/elxPreconditionedStochasticGradientDescent.cxx.o CMakeFiles/PreconditionedStochasticGradientDescent.dir/itkPreconditionedASGDOptimizer.cxx.o CMakeFiles/PreconditionedStochasticGradientDescent.dir/__/StandardGradientDescent/itkStandardGradientDescentOptimizer.cxx.o CMakeFiles/PreconditionedStochasticGradientDescent.dir/__/StandardGradientDescent/itkGradientDescentOptimizer2.cxx.o /usr/bin/ranlib ../../../bin/libPreconditionedStochasticGradientDescent-5.0.a make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 81%] Built target PreconditionedStochasticGradientDescent make -f Components/ResampleInterpolators/BSplineResampleInterpolator/CMakeFiles/BSplineResampleInterpolator.dir/build.make Components/ResampleInterpolators/BSplineResampleInterpolator/CMakeFiles/BSplineResampleInterpolator.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators/BSplineResampleInterpolator /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ResampleInterpolators/BSplineResampleInterpolator /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ResampleInterpolators/BSplineResampleInterpolator/CMakeFiles/BSplineResampleInterpolator.dir/DependInfo.cmake --color= [ 81%] Linking CXX static library ../../../bin/libMultiResolutionRegistration-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Registrations/MultiResolutionRegistration && /usr/bin/cmake -P CMakeFiles/MultiResolutionRegistration.dir/cmake_clean_target.cmake make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/ResampleInterpolators/BSplineResampleInterpolator/CMakeFiles/BSplineResampleInterpolator.dir/build.make Components/ResampleInterpolators/BSplineResampleInterpolator/CMakeFiles/BSplineResampleInterpolator.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 81%] Building CXX object Components/ResampleInterpolators/BSplineResampleInterpolator/CMakeFiles/BSplineResampleInterpolator.dir/elxBSplineResampleInterpolator.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ResampleInterpolators/BSplineResampleInterpolator && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/ResampleInterpolators/BSplineResampleInterpolator/CMakeFiles/BSplineResampleInterpolator.dir/elxBSplineResampleInterpolator.cxx.o -MF CMakeFiles/BSplineResampleInterpolator.dir/elxBSplineResampleInterpolator.cxx.o.d -o CMakeFiles/BSplineResampleInterpolator.dir/elxBSplineResampleInterpolator.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators/BSplineResampleInterpolator/elxBSplineResampleInterpolator.cxx cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Registrations/MultiResolutionRegistration && /usr/bin/cmake -E cmake_link_script CMakeFiles/MultiResolutionRegistration.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libMultiResolutionRegistration-5.0.a CMakeFiles/MultiResolutionRegistration.dir/elxMultiResolutionRegistration.cxx.o [ 82%] Linking CXX static library ../../../bin/libBSplineResampleInterpolator-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ResampleInterpolators/BSplineResampleInterpolator && /usr/bin/cmake -P CMakeFiles/BSplineResampleInterpolator.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ResampleInterpolators/BSplineResampleInterpolator && /usr/bin/cmake -E cmake_link_script CMakeFiles/BSplineResampleInterpolator.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libBSplineResampleInterpolator-5.0.a CMakeFiles/BSplineResampleInterpolator.dir/elxBSplineResampleInterpolator.cxx.o [ 82%] Linking CXX static library ../../../bin/libMultiResolutionRegistrationWithFeatures-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Registrations/MultiResolutionRegistrationWithFeatures && /usr/bin/cmake -P CMakeFiles/MultiResolutionRegistrationWithFeatures.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Registrations/MultiResolutionRegistrationWithFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/MultiResolutionRegistrationWithFeatures.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libMultiResolutionRegistrationWithFeatures-5.0.a CMakeFiles/MultiResolutionRegistrationWithFeatures.dir/elxMultiResolutionRegistrationWithFeatures.cxx.o /usr/bin/ranlib ../../../bin/libMultiResolutionRegistration-5.0.a /usr/bin/ranlib ../../../bin/libBSplineResampleInterpolator-5.0.a make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 82%] Built target BSplineResampleInterpolator make -f Components/ResampleInterpolators/RDBSplineResampleInterpolator/CMakeFiles/ReducedDimensionBSplineResampleInterpolator.dir/build.make Components/ResampleInterpolators/RDBSplineResampleInterpolator/CMakeFiles/ReducedDimensionBSplineResampleInterpolator.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators/RDBSplineResampleInterpolator /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ResampleInterpolators/RDBSplineResampleInterpolator /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ResampleInterpolators/RDBSplineResampleInterpolator/CMakeFiles/ReducedDimensionBSplineResampleInterpolator.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/ResampleInterpolators/RDBSplineResampleInterpolator/CMakeFiles/ReducedDimensionBSplineResampleInterpolator.dir/build.make Components/ResampleInterpolators/RDBSplineResampleInterpolator/CMakeFiles/ReducedDimensionBSplineResampleInterpolator.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 82%] Building CXX object Components/ResampleInterpolators/RDBSplineResampleInterpolator/CMakeFiles/ReducedDimensionBSplineResampleInterpolator.dir/elxRDBSplineResampleInterpolator.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ResampleInterpolators/RDBSplineResampleInterpolator && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/ResampleInterpolators/RDBSplineResampleInterpolator/CMakeFiles/ReducedDimensionBSplineResampleInterpolator.dir/elxRDBSplineResampleInterpolator.cxx.o -MF CMakeFiles/ReducedDimensionBSplineResampleInterpolator.dir/elxRDBSplineResampleInterpolator.cxx.o.d -o CMakeFiles/ReducedDimensionBSplineResampleInterpolator.dir/elxRDBSplineResampleInterpolator.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators/RDBSplineResampleInterpolator/elxRDBSplineResampleInterpolator.cxx [ 82%] Linking CXX static library ../../../bin/libMultiMetricMultiResolutionRegistration-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Registrations/MultiMetricMultiResolutionRegistration && /usr/bin/cmake -P CMakeFiles/MultiMetricMultiResolutionRegistration.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Registrations/MultiMetricMultiResolutionRegistration && /usr/bin/cmake -E cmake_link_script CMakeFiles/MultiMetricMultiResolutionRegistration.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libMultiMetricMultiResolutionRegistration-5.0.a CMakeFiles/MultiMetricMultiResolutionRegistration.dir/elxMultiMetricMultiResolutionRegistration.cxx.o /usr/bin/ranlib ../../../bin/libMultiResolutionRegistrationWithFeatures-5.0.a make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 82%] Built target MultiResolutionRegistration make -f Components/Resamplers/MyStandardResampler/CMakeFiles/MyStandardResampler.dir/build.make Components/Resamplers/MyStandardResampler/CMakeFiles/MyStandardResampler.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers/MyStandardResampler /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Resamplers/MyStandardResampler /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Resamplers/MyStandardResampler/CMakeFiles/MyStandardResampler.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Resamplers/MyStandardResampler/CMakeFiles/MyStandardResampler.dir/build.make Components/Resamplers/MyStandardResampler/CMakeFiles/MyStandardResampler.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 82%] Building CXX object Components/Resamplers/MyStandardResampler/CMakeFiles/MyStandardResampler.dir/elxMyStandardResampler.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Resamplers/MyStandardResampler && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Resamplers/MyStandardResampler/CMakeFiles/MyStandardResampler.dir/elxMyStandardResampler.cxx.o -MF CMakeFiles/MyStandardResampler.dir/elxMyStandardResampler.cxx.o.d -o CMakeFiles/MyStandardResampler.dir/elxMyStandardResampler.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers/MyStandardResampler/elxMyStandardResampler.cxx [ 83%] Linking CXX static library ../../../bin/libReducedDimensionBSplineResampleInterpolator-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ResampleInterpolators/RDBSplineResampleInterpolator && /usr/bin/cmake -P CMakeFiles/ReducedDimensionBSplineResampleInterpolator.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/ResampleInterpolators/RDBSplineResampleInterpolator && /usr/bin/cmake -E cmake_link_script CMakeFiles/ReducedDimensionBSplineResampleInterpolator.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libReducedDimensionBSplineResampleInterpolator-5.0.a CMakeFiles/ReducedDimensionBSplineResampleInterpolator.dir/elxRDBSplineResampleInterpolator.cxx.o /usr/bin/ranlib ../../../bin/libReducedDimensionBSplineResampleInterpolator-5.0.a make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 83%] Built target ReducedDimensionBSplineResampleInterpolator make -f Components/Transforms/AdvancedAffineTransform/CMakeFiles/AdvancedAffineTransformElastix.dir/build.make Components/Transforms/AdvancedAffineTransform/CMakeFiles/AdvancedAffineTransformElastix.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/AdvancedAffineTransform /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/AdvancedAffineTransform /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/AdvancedAffineTransform/CMakeFiles/AdvancedAffineTransformElastix.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Transforms/AdvancedAffineTransform/CMakeFiles/AdvancedAffineTransformElastix.dir/build.make Components/Transforms/AdvancedAffineTransform/CMakeFiles/AdvancedAffineTransformElastix.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 84%] Building CXX object Components/Transforms/AdvancedAffineTransform/CMakeFiles/AdvancedAffineTransformElastix.dir/elxAdvancedAffineTransform.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/AdvancedAffineTransform && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Transforms/AdvancedAffineTransform/CMakeFiles/AdvancedAffineTransformElastix.dir/elxAdvancedAffineTransform.cxx.o -MF CMakeFiles/AdvancedAffineTransformElastix.dir/elxAdvancedAffineTransform.cxx.o.d -o CMakeFiles/AdvancedAffineTransformElastix.dir/elxAdvancedAffineTransform.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/AdvancedAffineTransform/elxAdvancedAffineTransform.cxx make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 84%] Built target MultiResolutionRegistrationWithFeatures make -f Components/Transforms/AdvancedBSplineTransform/CMakeFiles/AdvancedBSplineTransform.dir/build.make Components/Transforms/AdvancedBSplineTransform/CMakeFiles/AdvancedBSplineTransform.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/AdvancedBSplineTransform /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/AdvancedBSplineTransform /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/AdvancedBSplineTransform/CMakeFiles/AdvancedBSplineTransform.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Transforms/AdvancedBSplineTransform/CMakeFiles/AdvancedBSplineTransform.dir/build.make Components/Transforms/AdvancedBSplineTransform/CMakeFiles/AdvancedBSplineTransform.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 85%] Building CXX object Components/Transforms/AdvancedBSplineTransform/CMakeFiles/AdvancedBSplineTransform.dir/elxAdvancedBSplineTransform.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/AdvancedBSplineTransform && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Transforms/AdvancedBSplineTransform/CMakeFiles/AdvancedBSplineTransform.dir/elxAdvancedBSplineTransform.cxx.o -MF CMakeFiles/AdvancedBSplineTransform.dir/elxAdvancedBSplineTransform.cxx.o.d -o CMakeFiles/AdvancedBSplineTransform.dir/elxAdvancedBSplineTransform.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/AdvancedBSplineTransform/elxAdvancedBSplineTransform.cxx /usr/bin/ranlib ../../../bin/libMultiMetricMultiResolutionRegistration-5.0.a make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 85%] Built target MultiMetricMultiResolutionRegistration make -f Components/Transforms/AffineLogStackTransform/CMakeFiles/AffineLogStackTransform.dir/build.make Components/Transforms/AffineLogStackTransform/CMakeFiles/AffineLogStackTransform.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/AffineLogStackTransform /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/AffineLogStackTransform /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/AffineLogStackTransform/CMakeFiles/AffineLogStackTransform.dir/DependInfo.cmake --color= [ 86%] Linking CXX static library ../../../bin/libMyStandardResampler-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Resamplers/MyStandardResampler && /usr/bin/cmake -P CMakeFiles/MyStandardResampler.dir/cmake_clean_target.cmake make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Transforms/AffineLogStackTransform/CMakeFiles/AffineLogStackTransform.dir/build.make Components/Transforms/AffineLogStackTransform/CMakeFiles/AffineLogStackTransform.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Resamplers/MyStandardResampler && /usr/bin/cmake -E cmake_link_script CMakeFiles/MyStandardResampler.dir/link.txt --verbose=1 [ 87%] Building CXX object Components/Transforms/AffineLogStackTransform/CMakeFiles/AffineLogStackTransform.dir/elxAffineLogStackTransform.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/AffineLogStackTransform && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Transforms/AffineLogStackTransform/CMakeFiles/AffineLogStackTransform.dir/elxAffineLogStackTransform.cxx.o -MF CMakeFiles/AffineLogStackTransform.dir/elxAffineLogStackTransform.cxx.o.d -o CMakeFiles/AffineLogStackTransform.dir/elxAffineLogStackTransform.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/AffineLogStackTransform/elxAffineLogStackTransform.cxx /usr/bin/ar qc ../../../bin/libMyStandardResampler-5.0.a CMakeFiles/MyStandardResampler.dir/elxMyStandardResampler.cxx.o /usr/bin/ranlib ../../../bin/libMyStandardResampler-5.0.a make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 87%] Built target MyStandardResampler make -f Components/Transforms/BSplineStackTransform/CMakeFiles/BSplineStackTransform.dir/build.make Components/Transforms/BSplineStackTransform/CMakeFiles/BSplineStackTransform.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/BSplineStackTransform /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/BSplineStackTransform /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/BSplineStackTransform/CMakeFiles/BSplineStackTransform.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Transforms/BSplineStackTransform/CMakeFiles/BSplineStackTransform.dir/build.make Components/Transforms/BSplineStackTransform/CMakeFiles/BSplineStackTransform.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 87%] Building CXX object Components/Transforms/BSplineStackTransform/CMakeFiles/BSplineStackTransform.dir/elxBSplineStackTransform.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/BSplineStackTransform && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Transforms/BSplineStackTransform/CMakeFiles/BSplineStackTransform.dir/elxBSplineStackTransform.cxx.o -MF CMakeFiles/BSplineStackTransform.dir/elxBSplineStackTransform.cxx.o.d -o CMakeFiles/BSplineStackTransform.dir/elxBSplineStackTransform.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/BSplineStackTransform/elxBSplineStackTransform.cxx [ 87%] Linking CXX static library ../../../bin/libAdvancedAffineTransformElastix-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/AdvancedAffineTransform && /usr/bin/cmake -P CMakeFiles/AdvancedAffineTransformElastix.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/AdvancedAffineTransform && /usr/bin/cmake -E cmake_link_script CMakeFiles/AdvancedAffineTransformElastix.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libAdvancedAffineTransformElastix-5.0.a CMakeFiles/AdvancedAffineTransformElastix.dir/elxAdvancedAffineTransform.cxx.o [ 87%] Linking CXX static library ../../../bin/libAffineLogStackTransform-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/AffineLogStackTransform && /usr/bin/cmake -P CMakeFiles/AffineLogStackTransform.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/AffineLogStackTransform && /usr/bin/cmake -E cmake_link_script CMakeFiles/AffineLogStackTransform.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libAffineLogStackTransform-5.0.a CMakeFiles/AffineLogStackTransform.dir/elxAffineLogStackTransform.cxx.o [ 87%] Linking CXX static library ../../../bin/libAdvancedBSplineTransform-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/AdvancedBSplineTransform && /usr/bin/cmake -P CMakeFiles/AdvancedBSplineTransform.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/AdvancedBSplineTransform && /usr/bin/cmake -E cmake_link_script CMakeFiles/AdvancedBSplineTransform.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libAdvancedBSplineTransform-5.0.a CMakeFiles/AdvancedBSplineTransform.dir/elxAdvancedBSplineTransform.cxx.o [ 88%] Linking CXX static library ../../../bin/libBSplineStackTransform-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/BSplineStackTransform && /usr/bin/cmake -P CMakeFiles/BSplineStackTransform.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/BSplineStackTransform && /usr/bin/cmake -E cmake_link_script CMakeFiles/BSplineStackTransform.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libBSplineStackTransform-5.0.a CMakeFiles/BSplineStackTransform.dir/elxBSplineStackTransform.cxx.o /usr/bin/ranlib ../../../bin/libAdvancedAffineTransformElastix-5.0.a /usr/bin/ranlib ../../../bin/libAffineLogStackTransform-5.0.a /usr/bin/ranlib ../../../bin/libBSplineStackTransform-5.0.a /usr/bin/ranlib ../../../bin/libAdvancedBSplineTransform-5.0.a make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 88%] Built target AdvancedAffineTransformElastix make -f Components/Transforms/DeformationFieldTransform/CMakeFiles/DeformationFieldTransform.dir/build.make Components/Transforms/DeformationFieldTransform/CMakeFiles/DeformationFieldTransform.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/DeformationFieldTransform /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/DeformationFieldTransform /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/DeformationFieldTransform/CMakeFiles/DeformationFieldTransform.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Transforms/DeformationFieldTransform/CMakeFiles/DeformationFieldTransform.dir/build.make Components/Transforms/DeformationFieldTransform/CMakeFiles/DeformationFieldTransform.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 88%] Building CXX object Components/Transforms/DeformationFieldTransform/CMakeFiles/DeformationFieldTransform.dir/elxDeformationFieldTransform.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/DeformationFieldTransform && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Transforms/DeformationFieldTransform/CMakeFiles/DeformationFieldTransform.dir/elxDeformationFieldTransform.cxx.o -MF CMakeFiles/DeformationFieldTransform.dir/elxDeformationFieldTransform.cxx.o.d -o CMakeFiles/DeformationFieldTransform.dir/elxDeformationFieldTransform.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/DeformationFieldTransform/elxDeformationFieldTransform.cxx make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 88%] Built target AffineLogStackTransform make -f Components/Transforms/EulerStackTransform/CMakeFiles/EulerStackTransform.dir/build.make Components/Transforms/EulerStackTransform/CMakeFiles/EulerStackTransform.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/EulerStackTransform /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/EulerStackTransform /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/EulerStackTransform/CMakeFiles/EulerStackTransform.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Transforms/EulerStackTransform/CMakeFiles/EulerStackTransform.dir/build.make Components/Transforms/EulerStackTransform/CMakeFiles/EulerStackTransform.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 89%] Building CXX object Components/Transforms/EulerStackTransform/CMakeFiles/EulerStackTransform.dir/elxEulerStackTransform.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/EulerStackTransform && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Transforms/EulerStackTransform/CMakeFiles/EulerStackTransform.dir/elxEulerStackTransform.cxx.o -MF CMakeFiles/EulerStackTransform.dir/elxEulerStackTransform.cxx.o.d -o CMakeFiles/EulerStackTransform.dir/elxEulerStackTransform.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/EulerStackTransform/elxEulerStackTransform.cxx make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 89%] Built target BSplineStackTransform make -f Components/Transforms/EulerTransform/CMakeFiles/EulerTransformElastix.dir/build.make Components/Transforms/EulerTransform/CMakeFiles/EulerTransformElastix.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/EulerTransform /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/EulerTransform /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/EulerTransform/CMakeFiles/EulerTransformElastix.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Transforms/EulerTransform/CMakeFiles/EulerTransformElastix.dir/build.make Components/Transforms/EulerTransform/CMakeFiles/EulerTransformElastix.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 89%] Building CXX object Components/Transforms/EulerTransform/CMakeFiles/EulerTransformElastix.dir/elxEulerTransform.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/EulerTransform && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Transforms/EulerTransform/CMakeFiles/EulerTransformElastix.dir/elxEulerTransform.cxx.o -MF CMakeFiles/EulerTransformElastix.dir/elxEulerTransform.cxx.o.d -o CMakeFiles/EulerTransformElastix.dir/elxEulerTransform.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/EulerTransform/elxEulerTransform.cxx make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 89%] Built target AdvancedBSplineTransform make -f Components/Transforms/RecursiveBSplineTransform/CMakeFiles/RecursiveBSplineTransform.dir/build.make Components/Transforms/RecursiveBSplineTransform/CMakeFiles/RecursiveBSplineTransform.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/RecursiveBSplineTransform /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/RecursiveBSplineTransform /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/RecursiveBSplineTransform/CMakeFiles/RecursiveBSplineTransform.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Transforms/RecursiveBSplineTransform/CMakeFiles/RecursiveBSplineTransform.dir/build.make Components/Transforms/RecursiveBSplineTransform/CMakeFiles/RecursiveBSplineTransform.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 89%] Building CXX object Components/Transforms/RecursiveBSplineTransform/CMakeFiles/RecursiveBSplineTransform.dir/elxRecursiveBSplineTransform.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/RecursiveBSplineTransform && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Transforms/RecursiveBSplineTransform/CMakeFiles/RecursiveBSplineTransform.dir/elxRecursiveBSplineTransform.cxx.o -MF CMakeFiles/RecursiveBSplineTransform.dir/elxRecursiveBSplineTransform.cxx.o.d -o CMakeFiles/RecursiveBSplineTransform.dir/elxRecursiveBSplineTransform.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/RecursiveBSplineTransform/elxRecursiveBSplineTransform.cxx [ 89%] Linking CXX static library ../../../bin/libDeformationFieldTransform-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/DeformationFieldTransform && /usr/bin/cmake -P CMakeFiles/DeformationFieldTransform.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/DeformationFieldTransform && /usr/bin/cmake -E cmake_link_script CMakeFiles/DeformationFieldTransform.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libDeformationFieldTransform-5.0.a CMakeFiles/DeformationFieldTransform.dir/elxDeformationFieldTransform.cxx.o [ 89%] Linking CXX static library ../../../bin/libEulerStackTransform-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/EulerStackTransform && /usr/bin/cmake -P CMakeFiles/EulerStackTransform.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/EulerStackTransform && /usr/bin/cmake -E cmake_link_script CMakeFiles/EulerStackTransform.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libEulerStackTransform-5.0.a CMakeFiles/EulerStackTransform.dir/elxEulerStackTransform.cxx.o [ 90%] Linking CXX static library ../../../bin/libEulerTransformElastix-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/EulerTransform && /usr/bin/cmake -P CMakeFiles/EulerTransformElastix.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/EulerTransform && /usr/bin/cmake -E cmake_link_script CMakeFiles/EulerTransformElastix.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libEulerTransformElastix-5.0.a CMakeFiles/EulerTransformElastix.dir/elxEulerTransform.cxx.o [ 90%] Linking CXX static library ../../../bin/libRecursiveBSplineTransform-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/RecursiveBSplineTransform && /usr/bin/cmake -P CMakeFiles/RecursiveBSplineTransform.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/RecursiveBSplineTransform && /usr/bin/cmake -E cmake_link_script CMakeFiles/RecursiveBSplineTransform.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libRecursiveBSplineTransform-5.0.a CMakeFiles/RecursiveBSplineTransform.dir/elxRecursiveBSplineTransform.cxx.o /usr/bin/ranlib ../../../bin/libDeformationFieldTransform-5.0.a /usr/bin/ranlib ../../../bin/libEulerTransformElastix-5.0.a /usr/bin/ranlib ../../../bin/libEulerStackTransform-5.0.a /usr/bin/ranlib ../../../bin/libRecursiveBSplineTransform-5.0.a make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 90%] Built target DeformationFieldTransform make -f Components/Transforms/SplineKernelTransform/CMakeFiles/SplineKernelTransform.dir/build.make Components/Transforms/SplineKernelTransform/CMakeFiles/SplineKernelTransform.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/SplineKernelTransform /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/SplineKernelTransform /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/SplineKernelTransform/CMakeFiles/SplineKernelTransform.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Transforms/SplineKernelTransform/CMakeFiles/SplineKernelTransform.dir/build.make Components/Transforms/SplineKernelTransform/CMakeFiles/SplineKernelTransform.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 90%] Building CXX object Components/Transforms/SplineKernelTransform/CMakeFiles/SplineKernelTransform.dir/elxSplineKernelTransform.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/SplineKernelTransform && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Transforms/SplineKernelTransform/CMakeFiles/SplineKernelTransform.dir/elxSplineKernelTransform.cxx.o -MF CMakeFiles/SplineKernelTransform.dir/elxSplineKernelTransform.cxx.o.d -o CMakeFiles/SplineKernelTransform.dir/elxSplineKernelTransform.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/SplineKernelTransform/elxSplineKernelTransform.cxx make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 90%] Built target EulerTransformElastix make -f Components/Transforms/TranslationStackTransform/CMakeFiles/TranslationStackTransform.dir/build.make Components/Transforms/TranslationStackTransform/CMakeFiles/TranslationStackTransform.dir/depend [ 90%] Built target EulerStackTransform make -f Components/Transforms/TranslationTransform/CMakeFiles/TranslationTransformElastix.dir/build.make Components/Transforms/TranslationTransform/CMakeFiles/TranslationTransformElastix.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/TranslationTransform /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/TranslationTransform /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/TranslationTransform/CMakeFiles/TranslationTransformElastix.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/TranslationStackTransform /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/TranslationStackTransform /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/TranslationStackTransform/CMakeFiles/TranslationStackTransform.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Transforms/TranslationTransform/CMakeFiles/TranslationTransformElastix.dir/build.make Components/Transforms/TranslationTransform/CMakeFiles/TranslationTransformElastix.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 90%] Building CXX object Components/Transforms/TranslationTransform/CMakeFiles/TranslationTransformElastix.dir/elxTranslationTransform.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/TranslationTransform && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Transforms/TranslationTransform/CMakeFiles/TranslationTransformElastix.dir/elxTranslationTransform.cxx.o -MF CMakeFiles/TranslationTransformElastix.dir/elxTranslationTransform.cxx.o.d -o CMakeFiles/TranslationTransformElastix.dir/elxTranslationTransform.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/TranslationTransform/elxTranslationTransform.cxx make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Components/Transforms/TranslationStackTransform/CMakeFiles/TranslationStackTransform.dir/build.make Components/Transforms/TranslationStackTransform/CMakeFiles/TranslationStackTransform.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 91%] Building CXX object Components/Transforms/TranslationStackTransform/CMakeFiles/TranslationStackTransform.dir/elxTranslationStackTransform.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/TranslationStackTransform && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Components/Transforms/TranslationStackTransform/CMakeFiles/TranslationStackTransform.dir/elxTranslationStackTransform.cxx.o -MF CMakeFiles/TranslationStackTransform.dir/elxTranslationStackTransform.cxx.o.d -o CMakeFiles/TranslationStackTransform.dir/elxTranslationStackTransform.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/TranslationStackTransform/elxTranslationStackTransform.cxx make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 91%] Built target RecursiveBSplineTransform [ 91%] Linking CXX static library ../../../bin/libTranslationStackTransform-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/TranslationStackTransform && /usr/bin/cmake -P CMakeFiles/TranslationStackTransform.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/TranslationStackTransform && /usr/bin/cmake -E cmake_link_script CMakeFiles/TranslationStackTransform.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libTranslationStackTransform-5.0.a CMakeFiles/TranslationStackTransform.dir/elxTranslationStackTransform.cxx.o /usr/bin/ranlib ../../../bin/libTranslationStackTransform-5.0.a [ 91%] Linking CXX static library ../../../bin/libSplineKernelTransform-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/SplineKernelTransform && /usr/bin/cmake -P CMakeFiles/SplineKernelTransform.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/SplineKernelTransform && /usr/bin/cmake -E cmake_link_script CMakeFiles/SplineKernelTransform.dir/link.txt --verbose=1 [ 92%] Linking CXX static library ../../../bin/libTranslationTransformElastix-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/TranslationTransform && /usr/bin/cmake -P CMakeFiles/TranslationTransformElastix.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Components/Transforms/TranslationTransform && /usr/bin/cmake -E cmake_link_script CMakeFiles/TranslationTransformElastix.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../bin/libTranslationTransformElastix-5.0.a CMakeFiles/TranslationTransformElastix.dir/elxTranslationTransform.cxx.o /usr/bin/ar qc ../../../bin/libSplineKernelTransform-5.0.a CMakeFiles/SplineKernelTransform.dir/elxSplineKernelTransform.cxx.o make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 92%] Built target TranslationStackTransform /usr/bin/ranlib ../../../bin/libTranslationTransformElastix-5.0.a /usr/bin/ranlib ../../../bin/libSplineKernelTransform-5.0.a make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 92%] Built target TranslationTransformElastix make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 92%] Built target SplineKernelTransform make -f Core/CMakeFiles/elastix_exe.dir/build.make Core/CMakeFiles/elastix_exe.dir/depend make -f Core/CMakeFiles/elastix_lib.dir/build.make Core/CMakeFiles/elastix_lib.dir/depend make -f Core/CMakeFiles/transformix_exe.dir/build.make Core/CMakeFiles/transformix_exe.dir/depend make -f Core/CMakeFiles/transformix_lib.dir/build.make Core/CMakeFiles/transformix_lib.dir/depend make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Core /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Core /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Core/CMakeFiles/elastix_lib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Core/CMakeFiles/elastix_lib.dir/build.make Core/CMakeFiles/elastix_lib.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Core /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Core /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Core/CMakeFiles/transformix_exe.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Core /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Core /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Core/CMakeFiles/transformix_lib.dir/DependInfo.cmake --color= [ 93%] Building CXX object Core/CMakeFiles/elastix_lib.dir/Main/elxParameterObject.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Core && /usr/bin/c++ -DELASTIX_USE_OPENMP -DELX_CMAKE_VERSION=\"3.22.0\" -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Core/CMakeFiles/elastix_lib.dir/Main/elxParameterObject.cxx.o -MF CMakeFiles/elastix_lib.dir/Main/elxParameterObject.cxx.o.d -o CMakeFiles/elastix_lib.dir/Main/elxParameterObject.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Core/Main/elxParameterObject.cxx make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Core/CMakeFiles/transformix_exe.dir/build.make Core/CMakeFiles/transformix_exe.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/elastix-TRdtE2/elastix-5.0.1 /build/elastix-TRdtE2/elastix-5.0.1/Core /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Core /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Core/CMakeFiles/elastix_exe.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Core/CMakeFiles/transformix_lib.dir/build.make Core/CMakeFiles/transformix_lib.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 94%] Building CXX object Core/CMakeFiles/transformix_exe.dir/Main/transformix.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Core && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout -I/build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff -I/build/elastix-TRdtE2/elastix-5.0.1/Core -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Install -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel -I/build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration -I/build/elastix-TRdtE2/elastix-5.0.1/Core/Main -I/build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics -I/build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations -I/build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Core/CMakeFiles/transformix_exe.dir/Main/transformix.cxx.o -MF CMakeFiles/transformix_exe.dir/Main/transformix.cxx.o.d -o CMakeFiles/transformix_exe.dir/Main/transformix.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Core/Main/transformix.cxx make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make -f Core/CMakeFiles/elastix_exe.dir/build.make Core/CMakeFiles/elastix_exe.dir/build make[3]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [ 95%] Building CXX object Core/CMakeFiles/transformix_lib.dir/Main/elxParameterObject.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Core && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/build/elastix-TRdtE2/elastix-5.0.1/Common -I/build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers -I/build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser -I/build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/Common/xout 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-I/build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms -I/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -std=gnu++11 -MD -MT Core/CMakeFiles/elastix_lib.dir/Install/elxComponentLoader.cxx.o -MF CMakeFiles/elastix_lib.dir/Install/elxComponentLoader.cxx.o.d -o CMakeFiles/elastix_lib.dir/Install/elxComponentLoader.cxx.o -c /build/elastix-TRdtE2/elastix-5.0.1/Core/Install/elxComponentLoader.cxx [ 99%] Building CXX object Core/CMakeFiles/transformix_lib.dir/Kernel/elxTransformixMain.cxx.o cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Core && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER 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/usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -lpthread -ldl -lm [ 99%] Linking CXX executable ../bin/elastix cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Core && /usr/bin/cmake -E cmake_link_script CMakeFiles/elastix_exe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/elastix-TRdtE2/elastix-5.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -lniftiio CMakeFiles/elastix_exe.dir/Main/elastix.cxx.o CMakeFiles/elastix_exe.dir/Kernel/elxElastixMain.cxx.o CMakeFiles/elastix_exe.dir/Install/elxComponentLoader.cxx.o -o ../bin/elastix ../bin/libparam-5.0.a ../bin/libxoutlib-5.0.a ../bin/libelxCommon-5.0.a ../bin/libelxCore-5.0.a ../bin/libmevisdcmtiff-5.0.a ../bin/libFixedGenericPyramid-5.0.a ../bin/libFixedRecursivePyramid-5.0.a 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../bin/libVarianceOverLastDimensionMetric-5.0.a ../bin/libMovingGenericPyramid-5.0.a ../bin/libMovingRecursivePyramid-5.0.a ../bin/libMovingSmoothingPyramid-5.0.a ../bin/libAdaGrad-5.0.a ../bin/libAdaptiveStochasticGradientDescent-5.0.a ../bin/libAdaptiveStochasticLBFGS-5.0.a ../bin/libAdaptiveStochasticVarianceReducedGradient-5.0.a ../bin/libConjugateGradient-5.0.a ../bin/libFiniteDifferenceGradientDescent-5.0.a ../bin/libFullSearch-5.0.a ../bin/libPowell-5.0.a ../bin/libPreconditionedStochasticGradientDescent-5.0.a ../bin/libQuasiNewtonLBFGS-5.0.a ../bin/libRegularStepGradientDescent-5.0.a ../bin/libStandardGradientDescent-5.0.a ../bin/libMultiMetricMultiResolutionRegistration-5.0.a ../bin/libMultiResolutionRegistration-5.0.a ../bin/libMultiResolutionRegistrationWithFeatures-5.0.a ../bin/libBSplineResampleInterpolator-5.0.a ../bin/libReducedDimensionBSplineResampleInterpolator-5.0.a ../bin/libMyStandardResampler-5.0.a ../bin/libAdvancedAffineTransformElastix-5.0.a ../bin/libAdvancedBSplineTransform-5.0.a ../bin/libAffineLogStackTransform-5.0.a ../bin/libBSplineStackTransform-5.0.a ../bin/libDeformationFieldTransform-5.0.a ../bin/libEulerStackTransform-5.0.a ../bin/libEulerTransformElastix-5.0.a ../bin/libRecursiveBSplineTransform-5.0.a ../bin/libSplineKernelTransform-5.0.a ../bin/libTranslationStackTransform-5.0.a ../bin/libTranslationTransformElastix-5.0.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/x86_64-linux-gnu/libpng.so -lcharls /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm -lm -ldl -lrt /usr/lib/x86_64-linux-gnu/libnetcdf.so ../bin/libKNNlib-5.0.a ../bin/libANNlib-5.0.so.1 ../bin/libelxCore-5.0.a ../bin/libparam-5.0.a ../bin/libxoutlib-5.0.a ../bin/libelxCommon-5.0.a /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.10 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.10 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 /usr/lib/x86_64-linux-gnu/libexpat.so /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 /usr/lib/x86_64-linux-gnu/libi2d.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg8.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg12.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libijg16.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtkcharls.so.16.3.6.6 -lcharls /usr/lib/x86_64-linux-gnu/libcmr.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmtls.so.16.3.6.6 /usr/lib/x86_64-linux-gnu/libdcmsr.so.16.3.6.6 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/usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libjpeg.so -lminc2 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm -lrt /usr/lib/x86_64-linux-gnu/libnetcdf.so /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -lpthread -ldl -lm [ 99%] Linking CXX static library ../bin/libelastix-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Core && /usr/bin/cmake -P CMakeFiles/elastix_lib.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Core && /usr/bin/cmake -E cmake_link_script CMakeFiles/elastix_lib.dir/link.txt --verbose=1 /usr/bin/ar qc ../bin/libelastix-5.0.a CMakeFiles/elastix_lib.dir/Main/elxParameterObject.cxx.o CMakeFiles/elastix_lib.dir/Main/elastixlib.cxx.o CMakeFiles/elastix_lib.dir/Kernel/elxElastixMain.cxx.o CMakeFiles/elastix_lib.dir/Install/elxComponentLoader.cxx.o [100%] Linking CXX static library ../bin/libtransformix-5.0.a cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Core && /usr/bin/cmake -P CMakeFiles/transformix_lib.dir/cmake_clean_target.cmake cd /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Core && /usr/bin/cmake -E cmake_link_script CMakeFiles/transformix_lib.dir/link.txt --verbose=1 /usr/bin/ar qc ../bin/libtransformix-5.0.a CMakeFiles/transformix_lib.dir/Main/elxParameterObject.cxx.o CMakeFiles/transformix_lib.dir/Main/transformixlib.cxx.o CMakeFiles/transformix_lib.dir/Kernel/elxElastixMain.cxx.o CMakeFiles/transformix_lib.dir/Kernel/elxTransformixMain.cxx.o CMakeFiles/transformix_lib.dir/Install/elxComponentLoader.cxx.o /usr/bin/ranlib ../bin/libelastix-5.0.a /usr/bin/ranlib ../bin/libtransformix-5.0.a make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [100%] Built target elastix_lib make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [100%] Built target transformix_lib make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' [100%] Built target elastix_exe [100%] Built target transformix_exe make[2]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep -i dh_auto_install -i cd obj-x86_64-linux-gnu && make -j4 install DESTDIR=/build/elastix-TRdtE2/elastix-5.0.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/elastix-TRdtE2/elastix-5.0.1 -B/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RELEASE" -- Installing: /build/elastix-TRdtE2/elastix-5.0.1/debian/tmp/usr/lib/libelxCommon-5.0.a -- Installing: /build/elastix-TRdtE2/elastix-5.0.1/debian/tmp/usr/lib/libparam-5.0.a -- Installing: /build/elastix-TRdtE2/elastix-5.0.1/debian/tmp/usr/lib/libxoutlib-5.0.a -- Installing: /build/elastix-TRdtE2/elastix-5.0.1/debian/tmp/usr/lib/libmevisdcmtiff-5.0.a -- Installing: 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override_dh_installdocs-indep make[1]: Entering directory '/build/elastix-TRdtE2/elastix-5.0.1' # create help files using doxygen set -x ; \ DOXDIR=`find . -name help -type d | sed 's?/help??'` ; \ cd ${DOXDIR} ; \ doxygen help/doxyfile.out ; \ find help -name "*.md5" -delete + find . -name help -type d + sed s?/help?? + DOXDIR=./obj-x86_64-linux-gnu + cd ./obj-x86_64-linux-gnu + doxygen help/doxyfile.out warning: Tag 'TCL_SUBST' at line 272 of file 'help/doxyfile.out' has become obsolete. 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in directory /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing/elastix_run_3DCT_lung.NC.bspline.ASGD.001d Searching for files in directory /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing/elastix_run_3DCT_lung.NC.bspline.ASGD.002 Searching for files in directory /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing/elastix_run_3DCT_lung.NC.bspline.ASGD.003 Searching for files in directory /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing/elastix_run_3DCT_lung.NC.bspline.ASGD.004 Searching for files in directory /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing/elastix_run_3DCT_lung.NC.bspline.ASGD.004b Searching for files in directory /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing/elastix_run_3DCT_lung.NC.bspline.QN.001 Searching for files in directory /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing/elastix_run_3DCT_lung.NC.bspline.SGD.001 Searching for files in directory /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing/elastix_run_3DCT_lung.NC.bspline_r.ASGD.001a Searching for files in directory /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing/elastix_run_3DCT_lung.NC.euler.ASGD.001 Searching for files in directory /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing/elastix_run_3DCT_lung.NC.translation.ASGD.001 Searching for files in directory /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing/elastix_run_3DCT_lung.NMI.bspline.ASGD.001 Searching for files in directory /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing/elastix_run_3DCT_lung.SSD.bspline.ASGD.001 Searching for files in directory /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing/elastix_run_3DCT_lung.SSD.bspline.ASGD.001-Threads1 Searching for files in directory /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing/elastix_run_3DCT_lung.SSD.bspline.ASGD.001-Threads2 Searching for files in directory /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing/elastix_run_3DCT_lung.SSD.bspline.ASGD.001-Threads4 Searching for files in directory /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing/elastix_run_3DCT_lung.SSD.bspline.ASGD.002 Searching for files in directory /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing/elastix_run_3DCT_lung.SSD.bspline.ASGD.003 Searching for files in directory /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing/elastix_run_example Searching for files in directory /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing/Temporary Searching for files in directory /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Testing/transformix_run_TransformixMemoryTest Searching for files in directory /build/elastix-TRdtE2/elastix-5.0.1/Testing Searching for files in directory /build/elastix-TRdtE2/elastix-5.0.1/Testing/Baselines Searching for files in directory /build/elastix-TRdtE2/elastix-5.0.1/Testing/CI Searching for files in directory /build/elastix-TRdtE2/elastix-5.0.1/Testing/CI/Azure Searching for files in directory /build/elastix-TRdtE2/elastix-5.0.1/Testing/Dashboard Searching for files in directory /build/elastix-TRdtE2/elastix-5.0.1/Testing/Data Searching for files in directory /build/elastix-TRdtE2/elastix-5.0.1/tools Reading and parsing tag files Parsing files Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/dox/doxygen/Modules.dox... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/dox/doxygen/Modules.dox... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/help/MainPage.dox... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/help/MainPage.dox... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions/itkAdvancedImageToImageMetric.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions/itkAdvancedImageToImageMetric.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions/itkExponentialLimiterFunction.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions/itkExponentialLimiterFunction.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions/itkHardLimiterFunction.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions/itkHardLimiterFunction.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions/itkImageToImageMetricWithFeatures.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions/itkImageToImageMetricWithFeatures.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions/itkLimiterFunctionBase.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions/itkLimiterFunctionBase.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions/itkMultiInputImageToImageMetricBase.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions/itkMultiInputImageToImageMetricBase.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions/itkParzenWindowHistogramImageToImageMetric.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions/itkParzenWindowHistogramImageToImageMetric.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions/itkScaledSingleValuedCostFunction.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions/itkScaledSingleValuedCostFunction.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions/itkSingleValuedPointSetToPointSetMetric.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions/itkSingleValuedPointSetToPointSetMetric.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions/itkTransformPenaltyTerm.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/CostFunctions/itkTransformPenaltyTerm.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers/itkImageFullSampler.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers/itkImageFullSampler.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers/itkImageGridSampler.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers/itkImageGridSampler.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers/itkImageRandomCoordinateSampler.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers/itkImageRandomCoordinateSampler.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers/itkImageRandomSampler.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers/itkImageRandomSampler.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers/itkImageRandomSamplerBase.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers/itkImageRandomSamplerBase.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers/itkImageRandomSamplerSparseMask.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers/itkImageRandomSamplerSparseMask.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers/itkImageSample.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers/itkImageSample.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers/itkImageSamplerBase.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers/itkImageSamplerBase.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers/itkImageToVectorContainerFilter.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers/itkImageToVectorContainerFilter.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers/itkMultiInputImageRandomCoordinateSampler.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers/itkMultiInputImageRandomCoordinateSampler.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers/itkVectorContainerSource.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers/itkVectorContainerSource.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers/itkVectorDataContainer.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/ImageSamplers/itkVectorDataContainer.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/itkAdvancedLinearInterpolateImageFunction.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/itkAdvancedLinearInterpolateImageFunction.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/itkAdvancedRayCastInterpolateImageFunction.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/itkAdvancedRayCastInterpolateImageFunction.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/itkComputeDisplacementDistribution.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/itkComputeDisplacementDistribution.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/itkComputeImageExtremaFilter.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/itkComputeImageExtremaFilter.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/itkComputeJacobianTerms.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/itkComputeJacobianTerms.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/itkComputePreconditionerUsingDisplacementDistribution.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/itkComputePreconditionerUsingDisplacementDistribution.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/itkErodeMaskImageFilter.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/itkErodeMaskImageFilter.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/itkGenericMultiResolutionPyramidImageFilter.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/itkGenericMultiResolutionPyramidImageFilter.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/itkImageFileCastWriter.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/itkImageFileCastWriter.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/itkMeshFileReaderBase.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/itkMeshFileReaderBase.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/itkMultiOrderBSplineDecompositionImageFilter.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/itkMultiOrderBSplineDecompositionImageFilter.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/itkMultiResolutionGaussianSmoothingPyramidImageFilter.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/itkMultiResolutionGaussianSmoothingPyramidImageFilter.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/itkMultiResolutionImageRegistrationMethod2.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/itkMultiResolutionImageRegistrationMethod2.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/itkMultiResolutionShrinkPyramidImageFilter.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/itkMultiResolutionShrinkPyramidImageFilter.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/itkNDImageBase.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/itkNDImageBase.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/itkNDImageTemplate.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/itkNDImageTemplate.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/itkParabolicErodeDilateImageFilter.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/itkParabolicErodeDilateImageFilter.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/itkParabolicErodeImageFilter.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/itkParabolicErodeImageFilter.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/itkParabolicMorphUtils.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/itkParabolicMorphUtils.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/itkRecursiveBSplineInterpolationWeightFunction.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/itkRecursiveBSplineInterpolationWeightFunction.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/itkReducedDimensionBSplineInterpolateImageFunction.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/itkReducedDimensionBSplineInterpolateImageFunction.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/itkScaledSingleValuedNonLinearOptimizer.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/itkScaledSingleValuedNonLinearOptimizer.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/itkTransformixInputPointFileReader.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/itkTransformixInputPointFileReader.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers/itkLineSearchOptimizer.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers/itkLineSearchOptimizer.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers/itkMoreThuenteLineSearchOptimizer.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/LineSearchOptimizers/itkMoreThuenteLineSearchOptimizer.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff/itkMevisDicomTiffImageIO.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff/itkMevisDicomTiffImageIO.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff/itkMevisDicomTiffImageIOFactory.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff/itkMevisDicomTiffImageIOFactory.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff/itkUseMevisDicomTiff.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/MevisDicomTiff/itkUseMevisDicomTiff.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUAdvancedBSplineDeformableTransformFactory.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUAdvancedBSplineDeformableTransformFactory.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUAdvancedCombinationTransformFactory.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUAdvancedCombinationTransformFactory.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUAdvancedEuler2DTransformFactory.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUAdvancedEuler2DTransformFactory.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUAdvancedEuler3DTransformFactory.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUAdvancedEuler3DTransformFactory.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUAdvancedMatrixOffsetTransformBaseFactory.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUAdvancedMatrixOffsetTransformBaseFactory.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUAdvancedSimilarity2DTransformFactory.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUAdvancedSimilarity2DTransformFactory.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUAdvancedSimilarity3DTransformFactory.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUAdvancedSimilarity3DTransformFactory.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUAdvancedTranslationTransformFactory.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUAdvancedTranslationTransformFactory.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUAffineTransformFactory.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUAffineTransformFactory.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUBSplineDecompositionImageFilterFactory.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUBSplineDecompositionImageFilterFactory.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUBSplineInterpolateImageFunctionFactory.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUBSplineInterpolateImageFunctionFactory.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUBSplineTransformFactory.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUBSplineTransformFactory.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUCastImageFilterFactory.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUCastImageFilterFactory.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUCompositeTransformFactory.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUCompositeTransformFactory.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUEuler2DTransformFactory.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUEuler2DTransformFactory.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUEuler3DTransformFactory.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUEuler3DTransformFactory.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUIdentityTransformFactory.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUIdentityTransformFactory.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUImageFactory.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUImageFactory.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPULinearInterpolateImageFunctionFactory.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPULinearInterpolateImageFunctionFactory.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUNearestNeighborInterpolateImageFunctionFactory.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUNearestNeighborInterpolateImageFunctionFactory.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUObjectFactoryBase.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUObjectFactoryBase.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPURecursiveGaussianImageFilterFactory.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPURecursiveGaussianImageFilterFactory.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUResampleImageFilterFactory.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUResampleImageFilterFactory.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUShrinkImageFilterFactory.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUShrinkImageFilterFactory.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUSimilarity2DTransformFactory.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUSimilarity2DTransformFactory.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUSimilarity3DTransformFactory.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUSimilarity3DTransformFactory.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUSupportedImages.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUSupportedImages.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUTranslationTransformFactory.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Factories/itkGPUTranslationTransformFactory.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUAdvancedBSplineDeformableTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUAdvancedBSplineDeformableTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUAdvancedCombinationTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUAdvancedCombinationTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUAdvancedCombinationTransformCopier.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUAdvancedCombinationTransformCopier.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUAdvancedEuler2DTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUAdvancedEuler2DTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUAdvancedEuler3DTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUAdvancedEuler3DTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUAdvancedMatrixOffsetTransformBase.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUAdvancedMatrixOffsetTransformBase.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUAdvancedSimilarity2DTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUAdvancedSimilarity2DTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUAdvancedSimilarity3DTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUAdvancedSimilarity3DTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUAdvancedTranslationTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUAdvancedTranslationTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUAffineTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUAffineTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUBSplineBaseTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUBSplineBaseTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUBSplineDecompositionImageFilter.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUBSplineDecompositionImageFilter.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUBSplineInterpolateImageFunction.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUBSplineInterpolateImageFunction.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUBSplineTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUBSplineTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUCastImageFilter.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUCastImageFilter.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUCompositeTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUCompositeTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUCompositeTransformBase.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUCompositeTransformBase.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUCompositeTransformCopier.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUCompositeTransformCopier.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUEuler2DTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUEuler2DTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUEuler3DTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUEuler3DTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUIdentityTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUIdentityTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUImageBase.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUImageBase.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUImageFunction.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUImageFunction.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUInterpolateImageFunction.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUInterpolateImageFunction.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUInterpolatorBase.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUInterpolatorBase.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUInterpolatorCopier.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUInterpolatorCopier.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPULinearInterpolateImageFunction.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPULinearInterpolateImageFunction.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUMath.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUMath.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUMatrixOffsetTransformBase.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUMatrixOffsetTransformBase.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUNearestNeighborInterpolateImageFunction.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUNearestNeighborInterpolateImageFunction.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPURecursiveGaussianImageFilter.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPURecursiveGaussianImageFilter.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUResampleImageFilter.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUResampleImageFilter.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUShrinkImageFilter.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUShrinkImageFilter.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUSimilarity2DTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUSimilarity2DTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUSimilarity3DTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUSimilarity3DTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUTransformBase.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUTransformBase.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUTransformCopier.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUTransformCopier.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUTranslationTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUTranslationTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUTranslationTransformBase.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/Filters/itkGPUTranslationTransformBase.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/itkGPUKernelManagerHelperFunctions.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/itkGPUKernelManagerHelperFunctions.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkGPUDataManager.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkGPUDataManager.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkGPUFunctorBase.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkGPUFunctorBase.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkGPUImage.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkGPUImage.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkGPUImageDataManager.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkGPUImageDataManager.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkGPUImageToImageFilter.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkGPUImageToImageFilter.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkGPUInPlaceImageFilter.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkGPUInPlaceImageFilter.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkGPUUnaryFunctorImageFilter.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkGPUUnaryFunctorImageFilter.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCL.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCL.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLBuffer.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLBuffer.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLCommandQueue.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLCommandQueue.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLContext.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLContext.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLEvent.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLEvent.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLEventList.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLEventList.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLExport.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLExport.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLExtension.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLExtension.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLGlobal.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLGlobal.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLImage.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLImage.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLImageFormat.h... Parsing file /build/elastix-TRdtE2//build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLKernel.h:42: warning: Invalid or missing section label /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLKernel.h:79: warning: Invalid or missing section label elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLImageFormat.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLKernel.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLKernel.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLKernelManager.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLKernelManager.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLKernelToImageBridge.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLKernelToImageBridge.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLLogger.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLLogger.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLMacro.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLMacro.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLMemoryObject.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLMemoryObject.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLOstreamSupport.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLOstreamSupport.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLPlatform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLPlatform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLProfilingTimeProbe.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLProfilingTimeProbe.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLProgram.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLProgram.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLSampler.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLSampler.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLSize.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLSize.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLStringUtils.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLStringUtils.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLUserEvent.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLUserEvent.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLUtil.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLUtil.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLVector.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLVector.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLVectorBase.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLVectorBase.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/itkOpenCLSetup.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/itkOpenCLSetup.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser/itkParameterFileParser.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser/itkParameterFileParser.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser/itkParameterMapInterface.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/ParameterFileParser/itkParameterMapInterface.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkAdvancedBSplineDeformableTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkAdvancedBSplineDeformableTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkAdvancedBSplineDeformableTransformBase.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkAdvancedBSplineDeformableTransformBase.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkAdvancedCombinationTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkAdvancedCombinationTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkAdvancedEuler3DTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkAdvancedEuler3DTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkAdvancedIdentityTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkAdvancedIdentityTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkAdvancedImageMomentsCalculator.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkAdvancedImageMomentsCalculator.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkAdvancedMatrixOffsetTransformBase.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkAdvancedMatrixOffsetTransformBase.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkAdvancedRigid2DTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkAdvancedRigid2DTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkAdvancedRigid3DTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkAdvancedRigid3DTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkAdvancedSimilarity2DTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkAdvancedSimilarity2DTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkAdvancedSimilarity3DTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkAdvancedSimilarity3DTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkAdvancedTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkAdvancedTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkAdvancedTranslationTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkAdvancedTranslationTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkAdvancedVersorRigid3DTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkAdvancedVersorRigid3DTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkAdvancedVersorTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkAdvancedVersorTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkBSplineDerivativeKernelFunction2.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkBSplineDerivativeKernelFunction2.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkBSplineInterpolationDerivativeWeightFunction.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkBSplineInterpolationDerivativeWeightFunction.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkBSplineInterpolationSecondOrderDerivativeWeightFunction.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkBSplineInterpolationSecondOrderDerivativeWeightFunction.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkBSplineInterpolationWeightFunction2.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkBSplineInterpolationWeightFunction2.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkBSplineInterpolationWeightFunctionBase.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkBSplineInterpolationWeightFunctionBase.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkBSplineKernelFunction2.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkBSplineKernelFunction2.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkBSplineSecondOrderDerivativeKernelFunction2.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkBSplineSecondOrderDerivativeKernelFunction2.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkCyclicBSplineDeformableTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkCyclicBSplineDeformableTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkCyclicGridScheduleComputer.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkCyclicGridScheduleComputer.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkEulerTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkEulerTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkGridScheduleComputer.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkGridScheduleComputer.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkKernelFunctionBase2.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkKernelFunctionBase2.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkRecursiveBSplineTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkRecursiveBSplineTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkRecursiveBSplineTransformImplementation.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkRecursiveBSplineTransformImplementation.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkStackTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkStackTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkTransformToDeterminantOfSpatialJacobianSource.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkTransformToDeterminantOfSpatialJacobianSource.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkTransformToSpatialJacobianSource.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkTransformToSpatialJacobianSource.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkUpsampleBSplineParametersFilter.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkUpsampleBSplineParametersFilter.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/TypeList.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/TypeList.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/xout/xoutbase.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/xout/xoutbase.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/xout/xoutcell.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/xout/xoutcell.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/xout/xoutmain.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/xout/xoutmain.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/xout/xoutrow.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/xout/xoutrow.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Common/xout/xoutsimple.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Common/xout/xoutsimple.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids/FixedGenericPyramid/elxFixedGenericPyramid.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids/FixedGenericPyramid/elxFixedGenericPyramid.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids/FixedRecursivePyramid/elxFixedRecursivePyramid.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids/FixedRecursivePyramid/elxFixedRecursivePyramid.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids/FixedShrinkingPyramid/elxFixedShrinkingPyramid.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids/FixedShrinkingPyramid/elxFixedShrinkingPyramid.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids/FixedSmoothingPyramid/elxFixedSmoothingPyramid.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids/FixedSmoothingPyramid/elxFixedSmoothingPyramid.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids/OpenCLFixedGenericPyramid/elxOpenCLFixedGenericPyramid.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/FixedImagePyramids/OpenCLFixedGenericPyramid/elxOpenCLFixedGenericPyramid.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers/Full/elxFullSampler.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers/Full/elxFullSampler.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers/Grid/elxGridSampler.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers/Grid/elxGridSampler.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers/MultInputRandomCoordinate/elxMultiInputRandomCoordinateSampler.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers/MultInputRandomCoordinate/elxMultiInputRandomCoordinateSampler.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers/Random/elxRandomSampler.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers/Random/elxRandomSampler.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers/RandomCoordinate/elxRandomCoordinateSampler.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers/RandomCoordinate/elxRandomCoordinateSampler.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers/RandomSparseMask/elxRandomSamplerSparseMask.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/ImageSamplers/RandomSparseMask/elxRandomSamplerSparseMask.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators/BSplineInterpolator/elxBSplineInterpolator.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators/BSplineInterpolator/elxBSplineInterpolator.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators/BSplineInterpolatorFloat/elxBSplineInterpolatorFloat.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators/BSplineInterpolatorFloat/elxBSplineInterpolatorFloat.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators/LinearInterpolator/elxLinearInterpolator.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators/LinearInterpolator/elxLinearInterpolator.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators/NearestNeighborInterpolator/elxNearestNeighborInterpolator.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators/NearestNeighborInterpolator/elxNearestNeighborInterpolator.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators/RayCastInterpolator/elxRayCastInterpolator.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators/RayCastInterpolator/elxRayCastInterpolator.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators/ReducedDimensionBSplineInterpolator/elxReducedDimensionBSplineInterpolator.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Interpolators/ReducedDimensionBSplineInterpolator/elxReducedDimensionBSplineInterpolator.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/AdvancedKappaStatistic/elxAdvancedKappaStatisticMetric.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/AdvancedKappaStatistic/elxAdvancedKappaStatisticMetric.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/AdvancedKappaStatistic/itkAdvancedKappaStatisticImageToImageMetric.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/AdvancedKappaStatistic/itkAdvancedKappaStatisticImageToImageMetric.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/AdvancedMattesMutualInformation/elxAdvancedMattesMutualInformationMetric.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/AdvancedMattesMutualInformation/elxAdvancedMattesMutualInformationMetric.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/AdvancedMattesMutualInformation/itkParzenWindowMutualInformationImageToImageMetric.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/AdvancedMattesMutualInformation/itkParzenWindowMutualInformationImageToImageMetric.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/AdvancedMeanSquares/elxAdvancedMeanSquaresMetric.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/AdvancedMeanSquares/elxAdvancedMeanSquaresMetric.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/AdvancedMeanSquares/itkAdvancedMeanSquaresImageToImageMetric.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/AdvancedMeanSquares/itkAdvancedMeanSquaresImageToImageMetric.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/AdvancedNormalizedCorrelation/elxAdvancedNormalizedCorrelationMetric.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/AdvancedNormalizedCorrelation/elxAdvancedNormalizedCorrelationMetric.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/AdvancedNormalizedCorrelation/itkAdvancedNormalizedCorrelationImageToImageMetric.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/AdvancedNormalizedCorrelation/itkAdvancedNormalizedCorrelationImageToImageMetric.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/BendingEnergyPenalty/elxTransformBendingEnergyPenaltyTerm.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/BendingEnergyPenalty/elxTransformBendingEnergyPenaltyTerm.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/BendingEnergyPenalty/itkTransformBendingEnergyPenaltyTerm.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/BendingEnergyPenalty/itkTransformBendingEnergyPenaltyTerm.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/CorrespondingPointsEuclideanDistanceMetric/elxCorrespondingPointsEuclideanDistanceMetric.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/CorrespondingPointsEuclideanDistanceMetric/elxCorrespondingPointsEuclideanDistanceMetric.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/CorrespondingPointsEuclideanDistanceMetric/itkCorrespondingPointsEuclideanDistancePointMetric.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/CorrespondingPointsEuclideanDistanceMetric/itkCorrespondingPointsEuclideanDistancePointMetric.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/DisplacementMagnitudePenalty/elxDisplacementMagnitudePenalty.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/DisplacementMagnitudePenalty/elxDisplacementMagnitudePenalty.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/DisplacementMagnitudePenalty/itkDisplacementMagnitudePenaltyTerm.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/DisplacementMagnitudePenalty/itkDisplacementMagnitudePenaltyTerm.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/DistancePreservingRigidityPenalty/elxDistancePreservingRigidityPenaltyTerm.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/DistancePreservingRigidityPenalty/elxDistancePreservingRigidityPenaltyTerm.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/DistancePreservingRigidityPenalty/itkDistancePreservingRigidityPenaltyTerm.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/DistancePreservingRigidityPenalty/itkDistancePreservingRigidityPenaltyTerm.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/GradientDifference/elxGradientDifferenceMetric.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/GradientDifference/elxGradientDifferenceMetric.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/GradientDifference/itkGradientDifferenceImageToImageMetric2.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/GradientDifference/itkGradientDifferenceImageToImageMetric2.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/elxKNNGraphAlphaMutualInformationMetric.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/elxKNNGraphAlphaMutualInformationMetric.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/itkKNNGraphAlphaMutualInformationImageToImageMetric.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/itkKNNGraphAlphaMutualInformationImageToImageMetric.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/itkANNbdTree.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/itkANNbdTree.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/itkANNBinaryTreeCreator.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/itkANNBinaryTreeCreator.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/itkANNBruteForceTree.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/itkANNBruteForceTree.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/itkANNFixedRadiusTreeSearch.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/itkANNFixedRadiusTreeSearch.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/itkANNkDTree.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/itkANNkDTree.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/itkANNPriorityTreeSearch.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/itkANNPriorityTreeSearch.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/itkANNStandardTreeSearch.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/itkANNStandardTreeSearch.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/itkBinaryANNTreeBase.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/itkBinaryANNTreeBase.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/itkBinaryANNTreeSearchBase.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/itkBinaryANNTreeSearchBase.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/itkBinaryTreeBase.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/itkBinaryTreeBase.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/itkBinaryTreeSearchBase.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/itkBinaryTreeSearchBase.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/itkListSampleCArray.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/KNNGraphAlphaMutualInformation/KNN/itkListSampleCArray.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/MissingStructurePenalty/elxMissingStructurePenalty.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/MissingStructurePenalty/elxMissingStructurePenalty.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/MissingStructurePenalty/itkMissingStructurePenalty.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/MissingStructurePenalty/itkMissingStructurePenalty.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/MissingStructurePenalty/vnl_adjugate_fixed.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/MissingStructurePenalty/vnl_adjugate_fixed.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/MutualInformationHistogram/elxMutualInformationHistogramMetric.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/MutualInformationHistogram/elxMutualInformationHistogramMetric.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/NormalizedGradientCorrelation/elxNormalizedGradientCorrelationMetric.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/NormalizedGradientCorrelation/elxNormalizedGradientCorrelationMetric.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/NormalizedGradientCorrelation/itkNormalizedGradientCorrelationImageToImageMetric.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/NormalizedGradientCorrelation/itkNormalizedGradientCorrelationImageToImageMetric.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/NormalizedMutualInformation/elxNormalizedMutualInformationMetric.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/NormalizedMutualInformation/elxNormalizedMutualInformationMetric.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/NormalizedMutualInformation/itkParzenWindowNormalizedMutualInformationImageToImageMetric.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/NormalizedMutualInformation/itkParzenWindowNormalizedMutualInformationImageToImageMetric.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/PatternIntensity/elxPatternIntensityMetric.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/PatternIntensity/elxPatternIntensityMetric.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/PatternIntensity/itkPatternIntensityImageToImageMetric.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/PatternIntensity/itkPatternIntensityImageToImageMetric.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/PCAMetric/elxPCAMetric.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/PCAMetric/elxPCAMetric.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/PCAMetric/itkPCAMetric.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/PCAMetric/itkPCAMetric.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/PCAMetric/itkPCAMetric_F_multithreaded.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/PCAMetric/itkPCAMetric_F_multithreaded.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/PCAMetric2/elxPCAMetric2.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/PCAMetric2/elxPCAMetric2.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/PCAMetric2/itkPCAMetric2.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/PCAMetric2/itkPCAMetric2.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/PolydataDummyPenalty/elxPolydataDummyPenalty.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/PolydataDummyPenalty/elxPolydataDummyPenalty.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/PolydataDummyPenalty/itkPolydataDummyPenalty.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/PolydataDummyPenalty/itkPolydataDummyPenalty.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/RigidityPenalty/elxTransformRigidityPenaltyTerm.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/RigidityPenalty/elxTransformRigidityPenaltyTerm.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/RigidityPenalty/itkTransformRigidityPenaltyTerm.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/RigidityPenalty/itkTransformRigidityPenaltyTerm.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/StatisticalShapePenalty/elxStatisticalShapePenalty.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/StatisticalShapePenalty/elxStatisticalShapePenalty.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/StatisticalShapePenalty/itkStatisticalShapePointPenalty.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/StatisticalShapePenalty/itkStatisticalShapePointPenalty.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/SumOfPairwiseCorrelationsMetric/elxSumOfPairwiseCorrelationCoefficientsMetric.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/SumOfPairwiseCorrelationsMetric/elxSumOfPairwiseCorrelationCoefficientsMetric.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/SumOfPairwiseCorrelationsMetric/itkSumOfPairwiseCorrelationCoefficientsMetric.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/SumOfPairwiseCorrelationsMetric/itkSumOfPairwiseCorrelationCoefficientsMetric.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/SumSquaredTissueVolumeDifferenceMetric/elxSumSquaredTissueVolumeDifferenceMetric.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/SumSquaredTissueVolumeDifferenceMetric/elxSumSquaredTissueVolumeDifferenceMetric.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/SumSquaredTissueVolumeDifferenceMetric/itkSumSquaredTissueVolumeDifferenceImageToImageMetric.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/SumSquaredTissueVolumeDifferenceMetric/itkSumSquaredTissueVolumeDifferenceImageToImageMetric.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/VarianceOverLastDimension/elxVarianceOverLastDimensionMetric.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/VarianceOverLastDimension/elxVarianceOverLastDimensionMetric.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/VarianceOverLastDimension/itkVarianceOverLastDimensionImageMetric.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/VarianceOverLastDimension/itkVarianceOverLastDimensionImageMetric.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/ViolaWellsMutualInformation/elxViolaWellsMutualInformationMetric.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/ViolaWellsMutualInformation/elxViolaWellsMutualInformationMetric.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids/MovingGenericPyramid/elxMovingGenericPyramid.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids/MovingGenericPyramid/elxMovingGenericPyramid.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids/MovingRecursivePyramid/elxMovingRecursivePyramid.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids/MovingRecursivePyramid/elxMovingRecursivePyramid.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids/MovingShrinkingPyramid/elxMovingShrinkingPyramid.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids/MovingShrinkingPyramid/elxMovingShrinkingPyramid.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids/MovingSmoothingPyramid/elxMovingSmoothingPyramid.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids/MovingSmoothingPyramid/elxMovingSmoothingPyramid.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids/OpenCLMovingGenericPyramid/elxOpenCLMovingGenericPyramid.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/MovingImagePyramids/OpenCLMovingGenericPyramid/elxOpenCLMovingGenericPyramid.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/AdaGrad/elxAdaGrad.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/AdaGrad/elxAdaGrad.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/AdaGrad/itkAdaptiveStepsizeOptimizer.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/AdaGrad/itkAdaptiveStepsizeOptimizer.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/AdaptiveStochasticGradientDescent/elxAdaptiveStochasticGradientDescent.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/AdaptiveStochasticGradientDescent/elxAdaptiveStochasticGradientDescent.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/AdaptiveStochasticGradientDescent/itkAdaptiveStochasticGradientDescentOptimizer.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/AdaptiveStochasticGradientDescent/itkAdaptiveStochasticGradientDescentOptimizer.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/AdaptiveStochasticLBFGS/elxAdaptiveStochasticLBFGS.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/AdaptiveStochasticLBFGS/elxAdaptiveStochasticLBFGS.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/AdaptiveStochasticLBFGS/itkAdaptiveStochasticLBFGSOptimizer.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/AdaptiveStochasticLBFGS/itkAdaptiveStochasticLBFGSOptimizer.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/AdaptiveStochasticVarianceReducedGradient/elxAdaptiveStochasticVarianceReducedGradient.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/AdaptiveStochasticVarianceReducedGradient/elxAdaptiveStochasticVarianceReducedGradient.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/AdaptiveStochasticVarianceReducedGradient/itkAdaptiveStochasticVarianceReducedGradientOptimizer.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/AdaptiveStochasticVarianceReducedGradient/itkAdaptiveStochasticVarianceReducedGradientOptimizer.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/AdaptiveStochasticVarianceReducedGradient/itkStandardStochasticVarianceReducedGradientDescentOptimizer.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/AdaptiveStochasticVarianceReducedGradient/itkStandardStochasticVarianceReducedGradientDescentOptimizer.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/AdaptiveStochasticVarianceReducedGradient/itkStochasticVarianceReducedGradientDescentOptimizer.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/AdaptiveStochasticVarianceReducedGradient/itkStochasticVarianceReducedGradientDescentOptimizer.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/CMAEvolutionStrategy/elxCMAEvolutionStrategy.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/CMAEvolutionStrategy/elxCMAEvolutionStrategy.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/CMAEvolutionStrategy/itkCMAEvolutionStrategyOptimizer.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/CMAEvolutionStrategy/itkCMAEvolutionStrategyOptimizer.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/ConjugateGradient/elxConjugateGradient.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/ConjugateGradient/elxConjugateGradient.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/ConjugateGradient/itkGenericConjugateGradientOptimizer.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/ConjugateGradient/itkGenericConjugateGradientOptimizer.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/ConjugateGradientFRPR/elxConjugateGradientFRPR.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/ConjugateGradientFRPR/elxConjugateGradientFRPR.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/FiniteDifferenceGradientDescent/elxFiniteDifferenceGradientDescent.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/FiniteDifferenceGradientDescent/elxFiniteDifferenceGradientDescent.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/FiniteDifferenceGradientDescent/itkFiniteDifferenceGradientDescentOptimizer.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/FiniteDifferenceGradientDescent/itkFiniteDifferenceGradientDescentOptimizer.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/FullSearch/elxFullSearchOptimizer.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/FullSearch/elxFullSearchOptimizer.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/FullSearch/itkFullSearchOptimizer.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/FullSearch/itkFullSearchOptimizer.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/Powell/elxPowell.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/Powell/elxPowell.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/PreconditionedGradientDescent/elxPreconditionedGradientDescent.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/PreconditionedGradientDescent/elxPreconditionedGradientDescent.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/PreconditionedGradientDescent/itkAdaptiveStochasticPreconditionedGradientDescentOptimizer.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/PreconditionedGradientDescent/itkAdaptiveStochasticPreconditionedGradientDescentOptimizer.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/PreconditionedGradientDescent/itkPreconditionedGradientDescentOptimizer.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/PreconditionedGradientDescent/itkPreconditionedGradientDescentOptimizer.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/PreconditionedGradientDescent/itkStochasticPreconditionedGradientDescentOptimizer.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/PreconditionedGradientDescent/itkStochasticPreconditionedGradientDescentOptimizer.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/PreconditionedStochasticGradientDescent/elxPreconditionedStochasticGradientDescent.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/PreconditionedStochasticGradientDescent/elxPreconditionedStochasticGradientDescent.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/PreconditionedStochasticGradientDescent/itkPreconditionedASGDOptimizer.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/PreconditionedStochasticGradientDescent/itkPreconditionedASGDOptimizer.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/QuasiNewtonLBFGS/elxQuasiNewtonLBFGS.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/QuasiNewtonLBFGS/elxQuasiNewtonLBFGS.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/QuasiNewtonLBFGS/itkQuasiNewtonLBFGSOptimizer.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/QuasiNewtonLBFGS/itkQuasiNewtonLBFGSOptimizer.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/RegularStepGradientDescent/elxRegularStepGradientDescent.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/RegularStepGradientDescent/elxRegularStepGradientDescent.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/RSGDEachParameterApart/elxRSGDEachParameterApart.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/RSGDEachParameterApart/elxRSGDEachParameterApart.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/RSGDEachParameterApart/itkRSGDEachParameterApartBaseOptimizer.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/RSGDEachParameterApart/itkRSGDEachParameterApartBaseOptimizer.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/RSGDEachParameterApart/itkRSGDEachParameterApartOptimizer.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/RSGDEachParameterApart/itkRSGDEachParameterApartOptimizer.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/Simplex/elxSimplex.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/Simplex/elxSimplex.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/SimultaneousPerturbation/elxSimultaneousPerturbation.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/SimultaneousPerturbation/elxSimultaneousPerturbation.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/StandardGradientDescent/elxStandardGradientDescent.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/StandardGradientDescent/elxStandardGradientDescent.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/StandardGradientDescent/itkGradientDescentOptimizer2.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/StandardGradientDescent/itkGradientDescentOptimizer2.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/StandardGradientDescent/itkStandardGradientDescentOptimizer.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/StandardGradientDescent/itkStandardGradientDescentOptimizer.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/StandardStochasticGradientDescent/itkStandardStochasticGradientDescentOptimizer.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/StandardStochasticGradientDescent/itkStandardStochasticGradientDescentOptimizer.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/StandardStochasticGradientDescent/itkStochasticGradientDescentOptimizer.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/StandardStochasticGradientDescent/itkStochasticGradientDescentOptimizer.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations/MultiMetricMultiResolutionRegistration/elxMultiMetricMultiResolutionRegistration.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations/MultiMetricMultiResolutionRegistration/elxMultiMetricMultiResolutionRegistration.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations/MultiMetricMultiResolutionRegistration/itkCombinationImageToImageMetric.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations/MultiMetricMultiResolutionRegistration/itkCombinationImageToImageMetric.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations/MultiMetricMultiResolutionRegistration/itkMultiMetricMultiResolutionImageRegistrationMethod.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations/MultiMetricMultiResolutionRegistration/itkMultiMetricMultiResolutionImageRegistrationMethod.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations/MultiResolutionRegistration/elxMultiResolutionRegistration.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations/MultiResolutionRegistration/elxMultiResolutionRegistration.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations/MultiResolutionRegistrationWithFeatures/elxMultiResolutionRegistrationWithFeatures.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations/MultiResolutionRegistrationWithFeatures/elxMultiResolutionRegistrationWithFeatures.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations/MultiResolutionRegistrationWithFeatures/itkMultiInputMultiResolutionImageRegistrationMethodBase.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations/MultiResolutionRegistrationWithFeatures/itkMultiInputMultiResolutionImageRegistrationMethodBase.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations/MultiResolutionRegistrationWithFeatures/itkMultiResolutionImageRegistrationMethodWithFeatures.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Registrations/MultiResolutionRegistrationWithFeatures/itkMultiResolutionImageRegistrationMethodWithFeatures.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators/BSplineResampleInterpolator/elxBSplineResampleInterpolator.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators/BSplineResampleInterpolator/elxBSplineResampleInterpolator.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators/BSplineResampleInterpolatorFloat/elxBSplineResampleInterpolatorFloat.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators/BSplineResampleInterpolatorFloat/elxBSplineResampleInterpolatorFloat.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators/LinearResampleInterpolator/elxLinearResampleInterpolator.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators/LinearResampleInterpolator/elxLinearResampleInterpolator.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators/NearestNeighborResampleInterpolator/elxNearestNeighborResampleInterpolator.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators/NearestNeighborResampleInterpolator/elxNearestNeighborResampleInterpolator.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators/RayCastResampleInterpolator/elxRayCastResampleInterpolator.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators/RayCastResampleInterpolator/elxRayCastResampleInterpolator.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators/RDBSplineResampleInterpolator/elxRDBSplineResampleInterpolator.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/ResampleInterpolators/RDBSplineResampleInterpolator/elxRDBSplineResampleInterpolator.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers/MyStandardResampler/elxMyStandardResampler.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers/MyStandardResampler/elxMyStandardResampler.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers/OpenCLResampler/elxOpenCLResampler.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Resamplers/OpenCLResampler/elxOpenCLResampler.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/AdvancedAffineTransform/elxAdvancedAffineTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/AdvancedAffineTransform/elxAdvancedAffineTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/AdvancedAffineTransform/itkCenteredTransformInitializer2.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/AdvancedAffineTransform/itkCenteredTransformInitializer2.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/AdvancedBSplineTransform/elxAdvancedBSplineTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/AdvancedBSplineTransform/elxAdvancedBSplineTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/AffineDTITransform/elxAffineDTITransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/AffineDTITransform/elxAffineDTITransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/AffineDTITransform/itkAffineDTI2DTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/AffineDTITransform/itkAffineDTI2DTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/AffineDTITransform/itkAffineDTI3DTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/AffineDTITransform/itkAffineDTI3DTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/AffineLogStackTransform/elxAffineLogStackTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/AffineLogStackTransform/elxAffineLogStackTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/AffineLogTransform/elxAffineLogTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/AffineLogTransform/elxAffineLogTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/AffineLogTransform/itkAffineLogTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/AffineLogTransform/itkAffineLogTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/BSplineDeformableTransformWithDiffusion/elxBSplineTransformWithDiffusion.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/BSplineDeformableTransformWithDiffusion/elxBSplineTransformWithDiffusion.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/BSplineDeformableTransformWithDiffusion/itkDeformationFieldRegulizer.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/BSplineDeformableTransformWithDiffusion/itkDeformationFieldRegulizer.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/BSplineDeformableTransformWithDiffusion/itkDeformationVectorFieldTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/BSplineDeformableTransformWithDiffusion/itkDeformationVectorFieldTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/BSplineDeformableTransformWithDiffusion/itkVectorMeanDiffusionImageFilter.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/BSplineDeformableTransformWithDiffusion/itkVectorMeanDiffusionImageFilter.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/BSplineStackTransform/elxBSplineStackTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/BSplineStackTransform/elxBSplineStackTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/DeformationFieldTransform/elxDeformationFieldTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/DeformationFieldTransform/elxDeformationFieldTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/DeformationFieldTransform/itkDeformationFieldInterpolatingTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/DeformationFieldTransform/itkDeformationFieldInterpolatingTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/EulerStackTransform/elxEulerStackTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/EulerStackTransform/elxEulerStackTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/EulerTransform/elxEulerTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/EulerTransform/elxEulerTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/MultiBSplineTransformWithNormal/elxMultiBSplineTransformWithNormal.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/MultiBSplineTransformWithNormal/elxMultiBSplineTransformWithNormal.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/MultiBSplineTransformWithNormal/itkMultiBSplineDeformableTransformWithNormal.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/MultiBSplineTransformWithNormal/itkMultiBSplineDeformableTransformWithNormal.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/RecursiveBSplineTransform/elxRecursiveBSplineTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/RecursiveBSplineTransform/elxRecursiveBSplineTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/SimilarityTransform/elxSimilarityTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/SimilarityTransform/elxSimilarityTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/SplineKernelTransform/elxSplineKernelTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/SplineKernelTransform/elxSplineKernelTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/SplineKernelTransform/itkElasticBodyReciprocalSplineKernelTransform2.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/SplineKernelTransform/itkElasticBodyReciprocalSplineKernelTransform2.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/SplineKernelTransform/itkElasticBodySplineKernelTransform2.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/SplineKernelTransform/itkElasticBodySplineKernelTransform2.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/SplineKernelTransform/itkKernelTransform2.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/SplineKernelTransform/itkKernelTransform2.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/SplineKernelTransform/itkThinPlateR2LogRSplineKernelTransform2.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/SplineKernelTransform/itkThinPlateR2LogRSplineKernelTransform2.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/SplineKernelTransform/itkThinPlateSplineKernelTransform2.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/SplineKernelTransform/itkThinPlateSplineKernelTransform2.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/SplineKernelTransform/itkVolumeSplineKernelTransform2.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/SplineKernelTransform/itkVolumeSplineKernelTransform2.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/TranslationStackTransform/elxTranslationStackTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/TranslationStackTransform/elxTranslationStackTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/TranslationStackTransform/itkAdvancedTranslationTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/TranslationStackTransform/itkAdvancedTranslationTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/TranslationTransform/elxTranslationTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/TranslationTransform/elxTranslationTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/TranslationTransform/itkTranslationTransformInitializer.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/TranslationTransform/itkTranslationTransformInitializer.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/WeightedCombinationTransform/elxWeightedCombinationTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/WeightedCombinationTransform/elxWeightedCombinationTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/WeightedCombinationTransform/itkWeightedCombinationTransform.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Components/Transforms/WeightedCombinationTransform/itkWeightedCombinationTransform.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses/elxFixedImagePyramidBase.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses/elxFixedImagePyramidBase.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses/elxImageSamplerBase.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses/elxImageSamplerBase.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses/elxInterpolatorBase.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses/elxInterpolatorBase.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses/elxMetricBase.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses/elxMetricBase.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses/elxMovingImagePyramidBase.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses/elxMovingImagePyramidBase.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses/elxOptimizerBase.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses/elxOptimizerBase.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses/elxRegistrationBase.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses/elxRegistrationBase.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses/elxResampleInterpolatorBase.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses/elxResampleInterpolatorBase.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses/elxResamplerBase.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses/elxResamplerBase.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses/elxTransformBase.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Core/ComponentBaseClasses/elxTransformBase.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration/elxConfiguration.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Core/Configuration/elxConfiguration.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Core/elxProgressCommand.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Core/elxProgressCommand.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Core/Install/elxBaseComponent.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Core/Install/elxBaseComponent.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Core/Install/elxBaseComponentSE.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Core/Install/elxBaseComponentSE.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Core/Install/elxComponentDatabase.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Core/Install/elxComponentDatabase.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Core/Install/elxComponentLoader.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Core/Install/elxComponentLoader.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Core/Install/elxIncludes.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Core/Install/elxIncludes.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Core/Install/elxInstallAllComponents.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Core/Install/elxInstallAllComponents.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Core/Install/elxInstallFunctions.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Core/Install/elxInstallFunctions.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Core/Install/elxMacro.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Core/Install/elxMacro.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel/elxElastixBase.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel/elxElastixBase.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel/elxElastixMain.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel/elxElastixMain.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel/elxElastixTemplate.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel/elxElastixTemplate.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel/elxTransformixMain.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel/elxTransformixMain.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Core/Main/elastix.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Core/Main/elastix.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Core/Main/elastixlib.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Core/Main/elastixlib.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Core/Main/elxElastixFilter.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Core/Main/elxElastixFilter.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Core/Main/elxParameterObject.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Core/Main/elxParameterObject.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Core/Main/elxPixelType.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Core/Main/elxPixelType.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Core/Main/elxTransformixFilter.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Core/Main/elxTransformixFilter.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/Core/Main/transformixlib.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/Core/Main/transformixlib.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ANN/ANN.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ANN/ANN.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ANN/ANNExport.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ANN/ANNExport.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Core/elxVersionMacros.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/Core/elxVersionMacros.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/elxInstallComponentFunctionCalls.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/elxInstallComponentFunctionCalls.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/elxInstallComponentFunctionDeclarations.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/elxInstallComponentFunctionDeclarations.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/elxSupportedImageTypes.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/elxSupportedImageTypes.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration/itkImageIOFactoryRegisterManager.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration/itkImageIOFactoryRegisterManager.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration/itkMeshIOFactoryRegisterManager.h... Parsing file /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration/itkMeshIOFactoryRegisterManager.h... Preprocessing /build/elastix-TRdtE2/elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration/itkTransformIOFactoryRegisterManager.h... Parsing file /build/elastix-TRdtE2//build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkGPUImageDataManager.h:48: warning: the name 'Data' supplied as the argument of the \class, \struct, \union, or \include command is not an input file /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLContext.h:108: warning: Documentation for undefined enum 'CreateMethod' found. /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:72: warning: Documentation for undefined enum 'DeviceType' found. /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:303: warning: Documentation for undefined enum 'FloatCapability' found. /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:354: warning: Documentation for undefined enum 'CacheType' found. /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLImageFormat.h:41: warning: Documentation for undefined enum 'ImageType' found. /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLImageFormat.h:60: warning: Documentation for undefined enum 'ChannelOrder' found. /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLImageFormat.h:108: warning: Documentation for undefined enum 'ChannelType' found. /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLMemoryObject.h:66: warning: Documentation for undefined enum 'Access' found. /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLPlatform.h:58: warning: Documentation for undefined enum 'VendorType' found. /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLSampler.h:99: warning: Documentation for undefined enum 'AddressingMode' found. /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLSampler.h:115: warning: Documentation for undefined enum 'FilterMode' found. /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/MissingStructurePenalty/elxMissingStructurePenalty.h:33: warning: End of list marker found without any preceding list items /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/PolydataDummyPenalty/elxPolydataDummyPenalty.h:37: warning: Unsupported xml/html tag found elastix-5.0.1/obj-x86_64-linux-gnu/ITKFactoryRegistration/itkTransformIOFactoryRegisterManager.h... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Computing nesting relations for classes... Associating documentation with classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Distributing member group documentation. Computing member references... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating images for formulas in HTML... Generating image form_0.png for formula Generating image form_1.png for formula Generating image form_2.png for formula Generating image form_3.png for formula Generating image form_4.png for formula Generating image form_5.png for formula Generating image form_6.png for formula Generating image form_7.png for formula Generating image form_8.png for formula Generating image form_9.png for formula Generating image form_10.png for formula Generating image form_11.png for formula Generating image form_12.png for formula Generating image form_13.png for formula Generating image form_14.png for formula Generating image form_15.png for formula Generating image form_16.png for formula Generating image form_17.png for formula Generating image form_18.png for formula Generating image form_19.png for formula Generating image form_20.png for formula Generating image form_21.png for formula Generating image form_22.png for formula Generating image form_23.png for formula Generating image form_24.png for formula Generating image form_25.png for formula Generating image form_26.png for formula Generating image form_27.png for formula Generating image form_28.png for formula Generating image form_29.png for formula Generating image form_30.png for formula Generating image form_31.png for formula Generating image form_32.png for formula Generating image form_33.png for formula Generating image form_34.png for formula Generating image form_35.png for formula Generating image form_36.png for formula Generating image form_37.png for formula Generating image form_38.png for formula Generating image form_39.png for formula Generating image form_40.png for formula Generating image form_41.png for formula Generating image form_42.png for formula Generating image form_43.png for formula Generating image form_44.png for formula Generating image form_45.png for formula Generating image form_46.png for formula Generating image form_47.png for formula Generating image form_48.png for formula Generating image form_49.png for formula Generating image form_50.png for formula Generating image form_51.png for formula Generating image form_52.png for formula Generating image form_53.png for formula Generating image form_54.png for formula Generating image form_55.png for formula Generating image form_56.png for formula Generating image form_57.png for formula Generating image form_58.png for formula Generating image form_59.png for formula Generating image form_60.png for formula Generating image form_61.png for formula Generating image form_62.png for formula Generating image form_63.png for formula Generating image form_64.png for formula Generating image form_65.png for formula Generating image form_66.png for formula Generating image form_67.png for formula Generating image form_68.png for formula Generating image form_69.png for formula Generating image form_70.png for formula Generating image form_71.png for formula Generating image form_72.png for formula Generating image form_73.png for formula Generating image form_74.png for formula Generating image form_75.png for formula Generating image form_76.png for formula Generating image form_77.png for formula Generating image form_78.png for formula Generating image form_79.png for formula Generating image form_80.png for formula Generating image form_81.png for formula Generating image form_82.png for formula Generating image form_83.png for formula Generating image form_84.png for formula Generating image form_85.png for formula Generating image form_86.png for formula Generating image form_87.png for formula Generating image form_88.png for formula Generating image form_89.png for formula Generating image form_90.png for formula Generating image form_91.png for formula Generating image form_92.png for formula Generating image form_93.png for formula Generating image form_94.png for formula Generating image form_95.png for formula Generating image form_96.png for formula Generating image form_97.png for formula Generating image form_98.png for formula Generating image form_99.png for formula Generating image form_100.png for formula Generating image form_101.png for formula Generating image form_102.png for formula Generating image form_103.png for formula Generating image form_104.png for formula Generating image form_105.png for formula Generating image form_106.png for formula Generating image form_107.png for formula Generating image form_108.png for formula Generating image form_109.png for formula Generating image form_110.png for formula Generating image form_111.png for formula Generating image form_112.png for formula Generating image form_113.png for formula Generating image form_114.png for formula Generating image form_115.png for formula Generating image form_116.png for formula Generating image form_117.png for formula Generating image form_118.png for formula Generating image form_119.png for formula Generating image form_120.png for formula Generating image form_121.png for formula Generating image form_122.png for formula Generating image form_123.png for formula Generating image form_124.png for formula Generating image form_125.png for formula Generating image form_126.png for formula Generating image form_127.png for formula Generating image form_128.png for formula Generating image form_129.png for formula Generating image form_130.png for formula Generating image form_131.png for formula Generating image form_132.png for formula Generating image form_133.png for formula Generating image form_134.png for formula Generating image form_135.png for formula Generating image form_136.png for formula Generating image form_137.png for formula Generating image form_138.png for formula Generating image form_139.png for formula Generating image form_140.png for formula Generating image form_141.png for formula Generating image form_142.png for formula Generating image form_143.png for formula Generating image form_144.png for formula Generating image form_145.png for formula Generating image form_146.png for formula Generating image form_147.png for formula Generating image form_148.png for formula Generating image form_149.png for formula Generating image form_150.png for formula Generating image form_151.png for formula Generating image form_152.png for formula Generating image form_153.png for formula Generating image form_154.png for formula Generating image form_155.png for formula Generating image form_156.png for formula Generating image form_157.png for formula Generating image form_158.png for formula Generating image form_159.png for formula Generating image form_160.png for formula Generating image form_161.png for formula Generating image form_162.png for formula Generating image form_163.png for formula Generating example documentation... Generating file sources... Generating code for file ANN.h... Generating code for file ANNExport.h... Generating code for file elastix.h... Generating code for file elastixlib.h... Generating code for file elxAdaGrad.h... Generating code for file elxAdaptiveStochasticGradientDescent.h... Generating code for file elxAdaptiveStochasticLBFGS.h... Generating code for file elxAdaptiveStochasticVarianceReducedGradient.h... Generating code for file elxAdvancedAffineTransform.h... Generating code for file elxAdvancedBSplineTransform.h... Generating code for file elxAdvancedKappaStatisticMetric.h... Generating code for file elxAdvancedMattesMutualInformationMetric.h... Generating code for file elxAdvancedMeanSquaresMetric.h... Generating code for file elxAdvancedNormalizedCorrelationMetric.h... Generating code for file elxAffineDTITransform.h... Generating code for file elxAffineLogStackTransform.h... Generating code for file elxAffineLogTransform.h... Generating code for file elxBaseComponent.h... Generating code for file elxBaseComponentSE.h... Generating code for file elxBSplineInterpolator.h... Generating code for file elxBSplineInterpolatorFloat.h... Generating code for file elxBSplineResampleInterpolator.h... Generating code for file elxBSplineResampleInterpolatorFloat.h... Generating code for file elxBSplineStackTransform.h... Generating code for file elxBSplineTransformWithDiffusion.h... Generating code for file elxCMAEvolutionStrategy.h... Generating code for file elxComponentDatabase.h... Generating code for file elxComponentLoader.h... Generating code for file elxConfiguration.h... Generating code for file elxConjugateGradient.h... Generating code for file elxConjugateGradientFRPR.h... Generating code for file elxCorrespondingPointsEuclideanDistanceMetric.h... Generating code for file elxDeformationFieldTransform.h... Generating code for file elxDisplacementMagnitudePenalty.h... Generating code for file elxDistancePreservingRigidityPenaltyTerm.h... Generating code for file elxElastixBase.h... Generating code for file elxElastixFilter.h... Generating code for file elxElastixMain.h... Generating code for file elxElastixTemplate.h... Generating code for file elxEulerStackTransform.h... Generating code for file elxEulerTransform.h... Generating code for file elxFiniteDifferenceGradientDescent.h... Generating code for file elxFixedGenericPyramid.h... Generating code for file elxFixedImagePyramidBase.h... Generating code for file elxFixedRecursivePyramid.h... Generating code for file elxFixedShrinkingPyramid.h... Generating code for file elxFixedSmoothingPyramid.h... Generating code for file elxFullSampler.h... Generating code for file elxFullSearchOptimizer.h... Generating code for file elxGradientDifferenceMetric.h... Generating code for file elxGridSampler.h... Generating code for file elxImageSamplerBase.h... Generating code for file elxIncludes.h... Generating code for file elxInstallAllComponents.h... Generating code for file elxInstallComponentFunctionCalls.h... Generating code for file elxInstallComponentFunctionDeclarations.h... Generating code for file elxInstallFunctions.h... Generating code for file elxInterpolatorBase.h... Generating code for file elxKNNGraphAlphaMutualInformationMetric.h... Generating code for file elxLinearInterpolator.h... Generating code for file elxLinearResampleInterpolator.h... Generating code for file elxMacro.h... Generating code for file elxMetricBase.h... Generating code for file elxMissingStructurePenalty.h... Generating code for file elxMovingGenericPyramid.h... Generating code for file elxMovingImagePyramidBase.h... Generating code for file elxMovingRecursivePyramid.h... Generating code for file elxMovingShrinkingPyramid.h... Generating code for file elxMovingSmoothingPyramid.h... Generating code for file elxMultiBSplineTransformWithNormal.h... Generating code for file elxMultiInputRandomCoordinateSampler.h... Generating code for file elxMultiMetricMultiResolutionRegistration.h... Generating code for file elxMultiResolutionRegistration.h... Generating code for file elxMultiResolutionRegistrationWithFeatures.h... Generating code for file elxMutualInformationHistogramMetric.h... Generating code for file elxMyStandardResampler.h... Generating code for file elxNearestNeighborInterpolator.h... Generating code for file elxNearestNeighborResampleInterpolator.h... Generating code for file elxNormalizedGradientCorrelationMetric.h... Generating code for file elxNormalizedMutualInformationMetric.h... Generating code for file elxOpenCLFixedGenericPyramid.h... Generating code for file elxOpenCLMovingGenericPyramid.h... Generating code for file elxOpenCLResampler.h... Generating code for file elxOptimizerBase.h... Generating code for file elxParameterObject.h... Generating code for file elxPatternIntensityMetric.h... Generating code for file elxPCAMetric.h... Generating code for file elxPCAMetric2.h... Generating code for file elxPixelType.h... Generating code for file elxPolydataDummyPenalty.h... Generating code for file elxPowell.h... Generating code for file elxPreconditionedGradientDescent.h... Generating code for file elxPreconditionedStochasticGradientDescent.h... Generating code for file elxProgressCommand.h... Generating code for file elxQuasiNewtonLBFGS.h... Generating code for file elxRandomCoordinateSampler.h... Generating code for file elxRandomSampler.h... Generating code for file elxRandomSamplerSparseMask.h... Generating code for file elxRayCastInterpolator.h... Generating code for file elxRayCastResampleInterpolator.h... Generating code for file elxRDBSplineResampleInterpolator.h... Generating code for file elxRecursiveBSplineTransform.h... Generating code for file elxReducedDimensionBSplineInterpolator.h... Generating code for file elxRegistrationBase.h... Generating code for file elxRegularStepGradientDescent.h... Generating code for file elxResampleInterpolatorBase.h... Generating code for file elxResamplerBase.h... Generating code for file elxRSGDEachParameterApart.h... Generating code for file elxSimilarityTransform.h... Generating code for file elxSimplex.h... Generating code for file elxSimultaneousPerturbation.h... Generating code for file elxSplineKernelTransform.h... Generating code for file elxStandardGradientDescent.h... Generating code for file elxStatisticalShapePenalty.h... Generating code for file elxSumOfPairwiseCorrelationCoefficientsMetric.h... Generating code for file elxSumSquaredTissueVolumeDifferenceMetric.h... Generating code for file elxSupportedImageTypes.h... Generating code for file elxTransformBase.h... Generating code for file elxTransformBendingEnergyPenaltyTerm.h... Generating code for file elxTransformixFilter.h... Generating code for file elxTransformixMain.h... Generating code for file elxTransformRigidityPenaltyTerm.h... Generating code for file elxTranslationStackTransform.h... Generating code for file elxTranslationTransform.h... Generating code for file elxVarianceOverLastDimensionMetric.h... Generating code for file elxVersionMacros.h... Generating code for file elxViolaWellsMutualInformationMetric.h... Generating code for file elxWeightedCombinationTransform.h... Generating code for file itkAdaptiveStepsizeOptimizer.h... Generating code for file itkAdaptiveStochasticGradientDescentOptimizer.h... Generating code for file itkAdaptiveStochasticLBFGSOptimizer.h... Generating code for file itkAdaptiveStochasticPreconditionedGradientDescentOptimizer.h... Generating code for file itkAdaptiveStochasticVarianceReducedGradientOptimizer.h... Generating code for file itkAdvancedBSplineDeformableTransform.h... Generating code for file itkAdvancedBSplineDeformableTransformBase.h... Generating code for file itkAdvancedCombinationTransform.h... Generating code for file itkAdvancedEuler3DTransform.h... Generating code for file itkAdvancedIdentityTransform.h... Generating code for file itkAdvancedImageMomentsCalculator.h... Generating code for file itkAdvancedImageToImageMetric.h... Generating code for file itkAdvancedKappaStatisticImageToImageMetric.h... Generating code for file itkAdvancedLinearInterpolateImageFunction.h... Generating code for file itkAdvancedMatrixOffsetTransformBase.h... Generating code for file itkAdvancedMeanSquaresImageToImageMetric.h... Generating code for file itkAdvancedNormalizedCorrelationImageToImageMetric.h... Generating code for file itkAdvancedRayCastInterpolateImageFunction.h... Generating code for file itkAdvancedRigid2DTransform.h... Generating code for file itkAdvancedRigid3DTransform.h... Generating code for file itkAdvancedSimilarity2DTransform.h... Generating code for file itkAdvancedSimilarity3DTransform.h... Generating code for file itkAdvancedTransform.h... Generating code for file itkAdvancedTranslationTransform.h... Generating code for file itkAdvancedTranslationTransform.h... Generating code for file itkAdvancedVersorRigid3DTransform.h... Generating code for file itkAdvancedVersorTransform.h... Generating code for file itkAffineDTI2DTransform.h... Generating code for file itkAffineDTI3DTransform.h... Generating code for file itkAffineLogTransform.h... Generating code for file itkANNbdTree.h... Generating code for file itkANNBinaryTreeCreator.h... Generating code for file itkANNBruteForceTree.h... Generating code for file itkANNFixedRadiusTreeSearch.h... Generating code for file itkANNkDTree.h... Generating code for file itkANNPriorityTreeSearch.h... Generating code for file itkANNStandardTreeSearch.h... Generating code for file itkBinaryANNTreeBase.h... Generating code for file itkBinaryANNTreeSearchBase.h... Generating code for file itkBinaryTreeBase.h... Generating code for file itkBinaryTreeSearchBase.h... Generating code for file itkBSplineDerivativeKernelFunction2.h... Generating code for file itkBSplineInterpolationDerivativeWeightFunction.h... Generating code for file itkBSplineInterpolationSecondOrderDerivativeWeightFunction.h... Generating code for file itkBSplineInterpolationWeightFunction2.h... Generating code for file itkBSplineInterpolationWeightFunctionBase.h... Generating code for file itkBSplineKernelFunction2.h... Generating code for file itkBSplineSecondOrderDerivativeKernelFunction2.h... Generating code for file itkCenteredTransformInitializer2.h... Generating code for file itkCMAEvolutionStrategyOptimizer.h... Generating code for file itkCombinationImageToImageMetric.h... Generating code for file itkComputeDisplacementDistribution.h... Generating code for file itkComputeImageExtremaFilter.h... Generating code for file itkComputeJacobianTerms.h... Generating code for file itkComputePreconditionerUsingDisplacementDistribution.h... Generating code for file itkCorrespondingPointsEuclideanDistancePointMetric.h... Generating code for file itkCyclicBSplineDeformableTransform.h... Generating code for file itkCyclicGridScheduleComputer.h... Generating code for file itkDeformationFieldInterpolatingTransform.h... Generating code for file itkDeformationFieldRegulizer.h... Generating code for file itkDeformationVectorFieldTransform.h... Generating code for file itkDisplacementMagnitudePenaltyTerm.h... Generating code for file itkDistancePreservingRigidityPenaltyTerm.h... Generating code for file itkElasticBodyReciprocalSplineKernelTransform2.h... Generating code for file itkElasticBodySplineKernelTransform2.h... Generating code for file itkErodeMaskImageFilter.h... Generating code for file itkEulerTransform.h... Generating code for file itkExponentialLimiterFunction.h... Generating code for file itkFiniteDifferenceGradientDescentOptimizer.h... Generating code for file itkFullSearchOptimizer.h... Generating code for file itkGenericConjugateGradientOptimizer.h... Generating code for file itkGenericMultiResolutionPyramidImageFilter.h... Generating code for file itkGPUAdvancedBSplineDeformableTransform.h... Generating code for file itkGPUAdvancedBSplineDeformableTransformFactory.h... Generating code for file itkGPUAdvancedCombinationTransform.h... Generating code for file itkGPUAdvancedCombinationTransformCopier.h... Generating code for file itkGPUAdvancedCombinationTransformFactory.h... Generating code for file itkGPUAdvancedEuler2DTransform.h... Generating code for file itkGPUAdvancedEuler2DTransformFactory.h... Generating code for file itkGPUAdvancedEuler3DTransform.h... Generating code for file itkGPUAdvancedEuler3DTransformFactory.h... Generating code for file itkGPUAdvancedMatrixOffsetTransformBase.h... Generating code for file itkGPUAdvancedMatrixOffsetTransformBaseFactory.h... Generating code for file itkGPUAdvancedSimilarity2DTransform.h... Generating code for file itkGPUAdvancedSimilarity2DTransformFactory.h... Generating code for file itkGPUAdvancedSimilarity3DTransform.h... Generating code for file itkGPUAdvancedSimilarity3DTransformFactory.h... Generating code for file itkGPUAdvancedTranslationTransform.h... Generating code for file itkGPUAdvancedTranslationTransformFactory.h... Generating code for file itkGPUAffineTransform.h... Generating code for file itkGPUAffineTransformFactory.h... Generating code for file itkGPUBSplineBaseTransform.h... Generating code for file itkGPUBSplineDecompositionImageFilter.h... Generating code for file itkGPUBSplineDecompositionImageFilterFactory.h... Generating code for file itkGPUBSplineInterpolateImageFunction.h... Generating code for file itkGPUBSplineInterpolateImageFunctionFactory.h... Generating code for file itkGPUBSplineTransform.h... Generating code for file itkGPUBSplineTransformFactory.h... Generating code for file itkGPUCastImageFilter.h... Generating code for file itkGPUCastImageFilterFactory.h... Generating code for file itkGPUCompositeTransform.h... Generating code for file itkGPUCompositeTransformBase.h... Generating code for file itkGPUCompositeTransformCopier.h... Generating code for file itkGPUCompositeTransformFactory.h... Generating code for file itkGPUDataManager.h... Generating code for file itkGPUEuler2DTransform.h... Generating code for file itkGPUEuler2DTransformFactory.h... Generating code for file itkGPUEuler3DTransform.h... Generating code for file itkGPUEuler3DTransformFactory.h... Generating code for file itkGPUFunctorBase.h... Generating code for file itkGPUIdentityTransform.h... Generating code for file itkGPUIdentityTransformFactory.h... Generating code for file itkGPUImage.h... Generating code for file itkGPUImageBase.h... Generating code for file itkGPUImageDataManager.h... Generating code for file itkGPUImageFactory.h... Generating code for file itkGPUImageFunction.h... Generating code for file itkGPUImageToImageFilter.h... Generating code for file itkGPUInPlaceImageFilter.h... Generating code for file itkGPUInterpolateImageFunction.h... Generating code for file itkGPUInterpolatorBase.h... Generating code for file itkGPUInterpolatorCopier.h... Generating code for file itkGPUKernelManagerHelperFunctions.h... Generating code for file itkGPULinearInterpolateImageFunction.h... Generating code for file itkGPULinearInterpolateImageFunctionFactory.h... Generating code for file itkGPUMath.h... Generating code for file itkGPUMatrixOffsetTransformBase.h... Generating code for file itkGPUNearestNeighborInterpolateImageFunction.h... Generating code for file itkGPUNearestNeighborInterpolateImageFunctionFactory.h... Generating code for file itkGPUObjectFactoryBase.h... Generating code for file itkGPURecursiveGaussianImageFilter.h... Generating code for file itkGPURecursiveGaussianImageFilterFactory.h... Generating code for file itkGPUResampleImageFilter.h... Generating code for file itkGPUResampleImageFilterFactory.h... Generating code for file itkGPUShrinkImageFilter.h... Generating code for file itkGPUShrinkImageFilterFactory.h... Generating code for file itkGPUSimilarity2DTransform.h... Generating code for file itkGPUSimilarity2DTransformFactory.h... Generating code for file itkGPUSimilarity3DTransform.h... Generating code for file itkGPUSimilarity3DTransformFactory.h... Generating code for file itkGPUSupportedImages.h... Generating code for file itkGPUTransformBase.h... Generating code for file itkGPUTransformCopier.h... Generating code for file itkGPUTranslationTransform.h... Generating code for file itkGPUTranslationTransformBase.h... Generating code for file itkGPUTranslationTransformFactory.h... Generating code for file itkGPUUnaryFunctorImageFilter.h... Generating code for file itkGradientDescentOptimizer2.h... Generating code for file itkGradientDifferenceImageToImageMetric2.h... Generating code for file itkGridScheduleComputer.h... Generating code for file itkHardLimiterFunction.h... Generating code for file itkImageFileCastWriter.h... Generating code for file itkImageFullSampler.h... Generating code for file itkImageGridSampler.h... Generating code for file itkImageIOFactoryRegisterManager.h... Generating code for file itkImageRandomCoordinateSampler.h... Generating code for file itkImageRandomSampler.h... Generating code for file itkImageRandomSamplerBase.h... Generating code for file itkImageRandomSamplerSparseMask.h... Generating code for file itkImageSample.h... Generating code for file itkImageSamplerBase.h... Generating code for file itkImageToImageMetricWithFeatures.h... Generating code for file itkImageToVectorContainerFilter.h... Generating code for file itkKernelFunctionBase2.h... Generating code for file itkKernelTransform2.h... Generating code for file itkKNNGraphAlphaMutualInformationImageToImageMetric.h... Generating code for file itkLimiterFunctionBase.h... Generating code for file itkLineSearchOptimizer.h... Generating code for file itkListSampleCArray.h... Generating code for file itkMeshFileReaderBase.h... Generating code for file itkMeshIOFactoryRegisterManager.h... Generating code for file itkMevisDicomTiffImageIO.h... Generating code for file itkMevisDicomTiffImageIOFactory.h... Generating code for file itkMissingStructurePenalty.h... Generating code for file itkMoreThuenteLineSearchOptimizer.h... Generating code for file itkMultiBSplineDeformableTransformWithNormal.h... Generating code for file itkMultiInputImageRandomCoordinateSampler.h... Generating code for file itkMultiInputImageToImageMetricBase.h... Generating code for file itkMultiInputMultiResolutionImageRegistrationMethodBase.h... Generating code for file itkMultiMetricMultiResolutionImageRegistrationMethod.h... Generating code for file itkMultiOrderBSplineDecompositionImageFilter.h... Generating code for file itkMultiResolutionGaussianSmoothingPyramidImageFilter.h... Generating code for file itkMultiResolutionImageRegistrationMethod2.h... Generating code for file itkMultiResolutionImageRegistrationMethodWithFeatures.h... Generating code for file itkMultiResolutionShrinkPyramidImageFilter.h... Generating code for file itkNDImageBase.h... Generating code for file itkNDImageTemplate.h... Generating code for file itkNormalizedGradientCorrelationImageToImageMetric.h... Generating code for file itkOpenCL.h... Generating code for file itkOpenCLBuffer.h... Generating code for file itkOpenCLCommandQueue.h... Generating code for file itkOpenCLContext.h... Generating code for file itkOpenCLDevice.h... Generating code for file itkOpenCLEvent.h... Generating code for file itkOpenCLEventList.h... Generating code for file itkOpenCLExport.h... Generating code for file itkOpenCLExtension.h... Generating code for file itkOpenCLGlobal.h... Generating code for file itkOpenCLImage.h... Generating code for file itkOpenCLImageFormat.h... Generating code for file itkOpenCLKernel.h... Generating code for file itkOpenCLKernelManager.h... Generating code for file itkOpenCLKernelToImageBridge.h... Generating code for file itkOpenCLLogger.h... Generating code for file itkOpenCLMacro.h... Generating code for file itkOpenCLMemoryObject.h... Generating code for file itkOpenCLOstreamSupport.h... Generating code for file itkOpenCLPlatform.h... Generating code for file itkOpenCLProfilingTimeProbe.h... Generating code for file itkOpenCLProgram.h... Generating code for file itkOpenCLSampler.h... Generating code for file itkOpenCLSetup.h... Generating code for file itkOpenCLSize.h... Generating code for file itkOpenCLStringUtils.h... Generating code for file itkOpenCLUserEvent.h... Generating code for file itkOpenCLUtil.h... Generating code for file itkOpenCLVector.h... Generating code for file itkOpenCLVectorBase.h... Generating code for file itkParabolicErodeDilateImageFilter.h... Generating code for file itkParabolicErodeImageFilter.h... Generating code for file itkParabolicMorphUtils.h... Generating code for file itkParameterFileParser.h... Generating code for file itkParameterMapInterface.h... Generating code for file itkParzenWindowHistogramImageToImageMetric.h... Generating code for file itkParzenWindowMutualInformationImageToImageMetric.h... Generating code for file itkParzenWindowNormalizedMutualInformationImageToImageMetric.h... Generating code for file itkPatternIntensityImageToImageMetric.h... Generating code for file itkPCAMetric.h... Generating code for file itkPCAMetric2.h... Generating code for file itkPCAMetric_F_multithreaded.h... Generating code for file itkPolydataDummyPenalty.h... Generating code for file itkPreconditionedASGDOptimizer.h... Generating code for file itkPreconditionedGradientDescentOptimizer.h... Generating code for file itkQuasiNewtonLBFGSOptimizer.h... Generating code for file itkRecursiveBSplineInterpolationWeightFunction.h... Generating code for file itkRecursiveBSplineTransform.h... Generating code for file itkRecursiveBSplineTransformImplementation.h... Generating code for file itkReducedDimensionBSplineInterpolateImageFunction.h... Generating code for file itkRSGDEachParameterApartBaseOptimizer.h... Generating code for file itkRSGDEachParameterApartOptimizer.h... Generating code for file itkScaledSingleValuedCostFunction.h... Generating code for file itkScaledSingleValuedNonLinearOptimizer.h... Generating code for file itkSingleValuedPointSetToPointSetMetric.h... Generating code for file itkStackTransform.h... Generating code for file itkStandardGradientDescentOptimizer.h... Generating code for file itkStandardStochasticGradientDescentOptimizer.h... Generating code for file itkStandardStochasticVarianceReducedGradientDescentOptimizer.h... Generating code for file itkStatisticalShapePointPenalty.h... Generating code for file itkStochasticGradientDescentOptimizer.h... Generating code for file itkStochasticPreconditionedGradientDescentOptimizer.h... Generating code for file itkStochasticVarianceReducedGradientDescentOptimizer.h... Generating code for file itkSumOfPairwiseCorrelationCoefficientsMetric.h... Generating code for file itkSumSquaredTissueVolumeDifferenceImageToImageMetric.h... Generating code for file itkThinPlateR2LogRSplineKernelTransform2.h... Generating code for file itkThinPlateSplineKernelTransform2.h... Generating code for file itkTransformBendingEnergyPenaltyTerm.h... Generating code for file itkTransformIOFactoryRegisterManager.h... Generating code for file itkTransformixInputPointFileReader.h... Generating code for file itkTransformPenaltyTerm.h... Generating code for file itkTransformRigidityPenaltyTerm.h... Generating code for file itkTransformToDeterminantOfSpatialJacobianSource.h... Generating code for file itkTransformToSpatialJacobianSource.h... Generating code for file itkTranslationTransformInitializer.h... Generating code for file itkUpsampleBSplineParametersFilter.h... Generating code for file itkUseMevisDicomTiff.h... Generating code for file itkVarianceOverLastDimensionImageMetric.h... Generating code for file itkVectorContainerSource.h... Generating code for file itkVectorDataContainer.h... Generating code for file itkVectorMeanDiffusionImageFilter.h... Generating code for file itkVolumeSplineKernelTransform2.h... Generating code for file itkWeightedCombinationTransform.h... Generating code for file transformixlib.h... Generating code for file TypeList.h... Generating code for file vnl_adjugate_fixed.h... Generating code for file xoutbase.h... Generating code for file/build/elastix-TRdtE2/elastix-5.0.1/Core/Kernel/elxElastixTemplate.h:57: warning: explicit link request to 'undef' could not be resolved /build/elastix-TRdtE2/elastix-5.0.1/Core/Install/elxMacro.h:35: warning: Unsupported xml/html tag found /build/elastix-TRdtE2/elastix-5.0.1/Core/Install/elxMacro.h:89: warning: Unsupported xml/html tag found /build/elastix-TRdtE2/elastix-5.0.1/Core/Install/elxMacro.h:93: warning: explicit link request to '_install' could not be resolved xoutcell.h... Generating code for file xoutmain.h... Generating code for file xoutrow.h... Generating code for file xoutsimple.h... Generating file documentation... Generating docs for file ANN.h... Generating docs for file ANNExport.h... Generating docs for file elastix.h... Generating docs for file elastixlib.h... Generating docs for file elxAdaGrad.h... Generating docs for file elxAdaptiveStochasticGradientDescent.h... Generating docs for file elxAdaptiveStochasticLBFGS.h... Generating docs for file elxAdaptiveStochasticVarianceReducedGradient.h... Generating docs for file elxAdvancedAffineTransform.h... Generating docs for file elxAdvancedBSplineTransform.h... Generating docs for file elxAdvancedKappaStatisticMetric.h... Generating docs for file elxAdvancedMattesMutualInformationMetric.h... Generating docs for file elxAdvancedMeanSquaresMetric.h... Generating docs for file elxAdvancedNormalizedCorrelationMetric.h... Generating docs for file elxAffineDTITransform.h... Generating docs for file elxAffineLogStackTransform.h... Generating docs for file elxAffineLogTransform.h... Generating docs for file elxBaseComponent.h... Generating docs for file elxBaseComponentSE.h... Generating docs for file elxBSplineInterpolator.h... Generating docs for file elxBSplineInterpolatorFloat.h... Generating docs for file elxBSplineResampleInterpolator.h... Generating docs for file elxBSplineResampleInterpolatorFloat.h... Generating docs for file elxBSplineStackTransform.h... Generating docs for file elxBSplineTransformWithDiffusion.h... Generating docs for file elxCMAEvolutionStrategy.h... Generating docs for file elxComponentDatabase.h... Generating docs for file elxComponentLoader.h... Generating docs for file elxConfiguration.h... Generating docs for file elxConjugateGradient.h... Generating docs for file elxConjugateGradientFRPR.h... Generating docs for file elxCorrespondingPointsEuclideanDistanceMetric.h... Generating docs for file elxDeformationFieldTransform.h... Generating docs for file elxDisplacementMagnitudePenalty.h... Generating docs for file elxDistancePreservingRigidityPenaltyTerm.h... Generating docs for file elxElastixBase.h... Generating docs for file elxElastixFilter.h... Generating docs for file elxElastixMain.h... Generating docs for file elxElastixTemplate.h... Generating docs for file elxEulerStackTransform.h... Generating docs for file elxEulerTransform.h... Generating docs for file elxFiniteDifferenceGradientDescent.h... Generating docs for file elxFixedGenericPyramid.h... Generating docs for file elxFixedImagePyramidBase.h... Generating docs for file elxFixedRecursivePyramid.h... Generating docs for file elxFixedShrinkingPyramid.h... Generating docs for file elxFixedSmoothingPyramid.h... Generating docs for file elxFullSampler.h... Generating docs for file elxFullSearchOptimizer.h... Generating docs for file elxGradientDifferenceMetric.h... Generating docs for file elxGridSampler.h... Generating docs for file elxImageSamplerBase.h... Generating docs for file elxIncludes.h... Generating docs for file elxInstallAllComponents.h... Generating docs for file elxInstallComponentFunctionCalls.h... Generating docs for file elxInstallComponentFunctionDeclarations.h... Generating docs for file elxInstallFunctions.h... Generating docs for file elxInterpolatorBase.h... Generating docs for file elxKNNGraphAlphaMutualInformationMetric.h... Generating docs for file elxLinearInterpolator.h... Generating docs for file elxLinearResampleInterpolator.h... Generating docs for file elxMacro.h... Generating docs for file elxMetricBase.h... Generating docs for file elxMissingStructurePenalty.h... Generating docs for file elxMovingGenericPyramid.h... Generating docs for file elxMovingImagePyramidBase.h... Generating docs for file elxMovingRecursivePyramid.h... Generating docs for file elxMovingShrinkingPyramid.h... Generating docs for file elxMovingSmoothingPyramid.h... Generating docs for file elxMultiBSplineTransformWithNormal.h... Generating docs for file elxMultiInputRandomCoordinateSampler.h... Generating docs for file elxMultiMetricMultiResolutionRegistration.h... Generating docs for file elxMultiResolutionRegistration.h... Generating docs for file elxMultiResolutionRegistrationWithFeatures.h... Generating docs for file elxMutualInformationHistogramMetric.h... Generating docs for file elxMyStandardResampler.h... Generating docs for file elxNearestNeighborInterpolator.h... Generating docs for file elxNearestNeighborResampleInterpolator.h... Generating docs for file elxNormalizedGradientCorrelationMetric.h... Generating docs for file elxNormalizedMutualInformationMetric.h... Generating docs for file elxOpenCLFixedGenericPyramid.h... Generating docs for file elxOpenCLMovingGenericPyramid.h... Generating docs for file elxOpenCLResampler.h... Generating docs for file elxOptimizerBase.h... Generating docs for file elxParameterObject.h... Generating docs for file elxPatternIntensityMetric.h... Generating docs for file elxPCAMetric.h... Generating docs for file elxPCAMetric2.h... Generating docs for file elxPixelType.h... Generating docs for file elxPolydataDummyPenalty.h... Generating docs for file elxPowell.h... Generating docs for file elxPreconditionedGradientDescent.h... Generating docs for file elxPreconditionedStochasticGradientDescent.h... Generating docs for file elxProgressCommand.h... Generating docs for file elxQuasiNewtonLBFGS.h... Generating docs for file elxRandomCoordinateSampler.h... Generating docs for file elxRandomSampler.h... Generating docs for file elxRandomSamplerSparseMask.h... Generating docs for file elxRayCastInterpolator.h... Generating docs for file elxRayCastResampleInterpolator.h... Generating docs for file elxRDBSplineResampleInterpolator.h... Generating docs for file elxRecursiveBSplineTransform.h... Generating docs for file elxReducedDimensionBSplineInterpolator.h... Generating docs for file elxRegistrationBase.h... Generating docs for file elxRegularStepGradientDescent.h... Generating docs for file elxResampleInterpolatorBase.h... Generating docs for file elxResamplerBase.h... Generating docs for file elxRSGDEachParameterApart.h... Generating docs for file elxSimilarityTransform.h... Generating docs for file elxSimplex.h... Generating docs for file elxSimultaneousPerturbation.h... Generating docs for file elxSplineKernelTransform.h... Generating docs for file elxStandardGradientDescent.h... Generating docs for file elxStatisticalShapePenalty.h... Generating docs for file elxSumOfPairwiseCorrelationCoefficientsMetric.h... Generating docs for file elxSumSquaredTissueVolumeDifferenceMetric.h... Generating docs for file elxSupportedImageTypes.h... Generating docs for file elxTransformBase.h... Generating docs for file elxTransformBendingEnergyPenaltyTerm.h... Generating docs for file elxTransformixFilter.h... Generating docs for file elxTransformixMain.h... Generating docs for file elxTransformRigidityPenaltyTerm.h... Generating docs for file elxTranslationStackTransform.h... Generating docs for file elxTranslationTransform.h... Generating docs for file elxVarianceOverLastDimensionMetric.h... Generating docs for file elxVersionMacros.h... Generating docs for file elxViolaWellsMutualInformationMetric.h... Generating docs for file elxWeightedCombinationTransform.h... Generating docs for file itkAdaptiveStepsizeOptimizer.h... Generating docs for file itkAdaptiveStochasticGradientDescentOptimizer.h... Generating docs for file itkAdaptiveStochasticLBFGSOptimizer.h... Generating docs for file itkAdaptiveStochasticPreconditionedGradientDescentOptimizer.h... Generating docs for file itkAdaptiveStochasticVarianceReducedGradientOptimizer.h... Generating docs for file itkAdvancedBSplineDeformableTransform.h... Generating docs for file itkAdvancedBSplineDeformableTransformBase.h... Generating docs for file itkAdvancedCombinationTransform.h... Generating docs for file itkAdvancedEuler3DTransform.h... Generating docs for file itkAdvancedIdentityTransform.h... Generating docs for file itkAdvancedImageMomentsCalculator.h... Generating docs for file itkAdvancedImageToImageMetric.h... Generating docs for file itkAdvancedKappaStatisticImageToImageMetric.h... Generating docs for file itkAdvancedLinearInterpolateImageFunction.h... Generating docs for file itkAdvancedMatrixOffsetTransformBase.h... Generating docs for file itkAdvancedMeanSquaresImageToImageMetric.h... Generating docs for file itkAdvancedNormalizedCorrelationImageToImageMetric.h... Generating docs for file itkAdvancedRayCastInterpolateImageFunction.h... Generating docs for file itkAdvancedRigid2DTransform.h... Generating docs for file itkAdvancedRigid3DTransform.h... Generating docs for file itkAdvancedSimilarity2DTransform.h... Generating docs for file itkAdvancedSimilarity3DTransform.h... Generating docs for file itkAdvancedTransform.h... Generating docs for file itkAdvancedTranslationTransform.h... Generating docs for file itkAdvancedTranslationTransform.h... Generating docs for file itkAdvancedVersorRigid3DTransform.h... Generating docs for file itkAdvancedVersorTransform.h... Generating docs for file itkAffineDTI2DTransform.h... Generating docs for file itkAffineDTI3DTransform.h... Generating docs for file itkAffineLogTransform.h... Generating docs for file itkANNbdTree.h... Generating docs for file itkANNBinaryTreeCreator.h... Generating docs for file itkANNBruteForceTree.h... Generating docs for file itkANNFixedRadiusTreeSearch.h... Generating docs for file itkANNkDTree.h... Generating docs for file itkANNPriorityTreeSearch.h... Generating docs for file itkANNStandardTreeSearch.h... Generating docs for file itkBinaryANNTreeBase.h... Generating docs for file itkBinaryANNTreeSearchBase.h... Generating docs for file itkBinaryTreeBase.h... Generating docs for file itkBinaryTreeSearchBase.h... Generating docs for file itkBSplineDerivativeKernelFunction2.h... Generating docs for file itkBSplineInterpolationDerivativeWeightFunction.h... Generating docs for file itkBSplineInterpolationSecondOrderDerivativeWeightFunction.h... Generating docs for file itkBSplineInterpolationWeightFunction2.h... Generating docs for file itkBSplineInterpolationWeightFunctionBase.h... Generating docs for file itkBSplineKernelFunction2.h... Generating docs for file itkBSplineSecondOrderDerivativeKernelFunction2.h... Generating docs for file itkCenteredTransformInitializer2.h... Generating docs for file itkCMAEvolutionStrategyOptimizer.h... Generating docs for file itkCombinationImageToImageMetric.h... Generating docs for file itkComputeDisplacementDistribution.h... Generating docs for file itkComputeImageExtremaFilter.h... Generating docs for file itkComputeJacobianTerms.h... Generating docs for file itkComputePreconditionerUsingDisplacementDistribution.h... Generating docs for file itkCorrespondingPointsEuclideanDistancePointMetric.h... Generating docs for file itkCyclicBSplineDeformableTransform.h... Generating docs for file itkCyclicGridScheduleComputer.h... Generating docs for file itkDeformationFieldInterpolatingTransform.h... Generating docs for file itkDeformationFieldRegulizer.h... Generating docs for file itkDeformationVectorFieldTransform.h... Generating docs for file itkDisplacementMagnitudePenaltyTerm.h... Generating docs for file itkDistancePreservingRigidityPenaltyTerm.h... Generating docs for file itkElasticBodyReciprocalSplineKernelTransform2.h... Generating docs for file itkElasticBodySplineKernelTransform2.h... Generating docs for file itkErodeMaskImageFilter.h... Generating docs for file itkEulerTransform.h... Generating docs for file itkExponentialLimiterFunction.h... Generating docs for file itkFiniteDifferenceGradientDescentOptimizer.h... Generating docs for file itkFullSearchOptimizer.h... Generating docs for file itkGenericConjugateGradientOptimizer.h... Generating docs for file itkGenericMultiResolutionPyramidImageFilter.h... Generating docs for file itkGPUAdvancedBSplineDeformableTransform.h... Generating docs for file itkGPUAdvancedBSplineDeformableTransformFactory.h... Generating docs for file itkGPUAdvancedCombinationTransform.h... Generating docs for file itkGPUAdvancedCombinationTransformCopier.h... 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Generating docs for file itkGPUAffineTransformFactory.h... Generating docs for file itkGPUBSplineBaseTransform.h... Generating docs for file itkGPUBSplineDecompositionImageFilter.h... Generating docs for file itkGPUBSplineDecompositionImageFilterFactory.h... Generating docs for file itkGPUBSplineInterpolateImageFunction.h... Generating docs for file itkGPUBSplineInterpolateImageFunctionFactory.h... Generating docs for file itkGPUBSplineTransform.h... Generating docs for file itkGPUBSplineTransformFactory.h... Generating docs for file itkGPUCastImageFilter.h... Generating docs for file itkGPUCastImageFilterFactory.h... Generating docs for file itkGPUCompositeTransform.h... Generating docs for file itkGPUCompositeTransformBase.h... Generating docs for file itkGPUCompositeTransformCopier.h... Generating docs for file itkGPUCompositeTransformFactory.h... Generating docs for file itkGPUDataManager.h... Generating docs for file itkGPUEuler2DTransform.h... Generating docs for file itkGPUEuler2DTransformFactory.h... Generating docs for file itkGPUEuler3DTransform.h... Generating docs for file itkGPUEuler3DTransformFactory.h... Generating docs for file itkGPUFunctorBase.h... Generating docs for file itkGPUIdentityTransform.h... Generating docs for file itkGPUIdentityTransformFactory.h... Generating docs for file itkGPUImage.h... Generating docs for file itkGPUImageBase.h... Generating docs for file itkGPUImageDataManager.h... Generating docs for file itkGPUImageFactory.h... Generating docs for file itkGPUImageFunction.h... Generating docs for file itkGPUImageToImageFilter.h... Generating docs for file itkGPUInPlaceImageFilter.h... Generating docs for file itkGPUInterpolateImageFunction.h... Generating docs for file itkGPUInterpolatorBase.h... Generating docs for file itkGPUInterpolatorCopier.h... Generating docs for file itkGPUKernelManagerHelperFunctions.h... Generating docs for file itkGPULinearInterpolateImageFunction.h... Generating docs for file itkGPULinearInterpolateImageFunctionFactory.h... Generating docs for file itkGPUMath.h... Generating docs for file itkGPUMatrixOffsetTransformBase.h... Generating docs for file itkGPUNearestNeighborInterpolateImageFunction.h... Generating docs for file itkGPUNearestNeighborInterpolateImageFunctionFactory.h... Generating docs for file itkGPUObjectFactoryBase.h... Generating docs for file itkGPURecursiveGaussianImageFilter.h... Generating docs for file itkGPURecursiveGaussianImageFilterFactory.h... Generating docs for file itkGPUResampleImageFilter.h... Generating docs for file itkGPUResampleImageFilterFactory.h... Generating docs for file itkGPUShrinkImageFilter.h... Generating docs for file itkGPUShrinkImageFilterFactory.h... Generating docs for file itkGPUSimilarity2DTransform.h... Generating docs for file itkGPUSimilarity2DTransformFactory.h... Generating docs for file itkGPUSimilarity3DTransform.h... Generating docs for file itkGPUSimilarity3DTransformFactory.h... Generating docs for file itkGPUSupportedImages.h... Generating docs for file itkGPUTransformBase.h... Generating docs for file itkGPUTransformCopier.h... Generating docs for file itkGPUTranslationTransform.h... Generating docs for file itkGPUTranslationTransformBase.h... Generating docs for file itkGPUTranslationTransformFactory.h... Generating docs for file itkGPUUnaryFunctorImageFilter.h... Generating docs for file itkGradientDescentOptimizer2.h... Generating docs for file itkGradientDifferenceImageToImageMetric2.h... Generating docs for file itkGridScheduleComputer.h... Generating docs for file itkHardLimiterFunction.h... Generating docs for file itkImageFileCastWriter.h... Generating docs for file itkImageFullSampler.h... Generating docs for file itkImageGridSampler.h... Generating docs for file itkImageIOFactoryRegisterManager.h... Generating docs for file itkImageRandomCoordinateSampler.h... Generating docs for file itkImageRandomSampler.h... Generating docs for file itkImageRandomSamplerBase.h... Generating docs for file itkImageRandomSamplerSparseMask.h... Generating docs for file itkImageSample.h... Generating docs for file itkImageSamplerBase.h... Generating docs for file itkImageToImageMetricWithFeatures.h... Generating docs for file itkImageToVectorContainerFilter.h... Generating docs for file itkKernelFunctionBase2.h... Generating docs for file itkKernelTransform2.h... Generating docs for file itkKNNGraphAlphaMutualInformationImageToImageMetric.h... Generating docs for file itkLimiterFunctionBase.h... Generating docs for file itkLineSearchOptimizer.h... Generating docs for file itkListSampleCArray.h... Generating docs for file itkMeshFileReaderBase.h... Generating docs for file itkMeshIOFactoryRegisterManager.h... Generating docs for file itkMevisDicomTiffImageIO.h... Generating docs for file itkMevisDicomTiffImageIOFactory.h... Generating docs for file itkMissingStructurePenalty.h... Generating docs for file itkMoreThuenteLineSearchOptimizer.h... Generating docs for file itkMultiBSplineDeformableTransformWithNormal.h... Generating docs for file itkMultiInputImageRandomCoordinateSampler.h... Generating docs for file itkMultiInputImageToImageMetricBase.h... Generating docs for file itkMultiInputMultiResolutionImageRegistrationMethodBase.h... Generating docs for file itkMultiMetricMultiResolutionImageRegistrationMethod.h... Generating docs for file itkMultiOrderBSplineDecompositionImageFilter.h... Generating docs for file itkMultiResolutionGaussianSmoothingPyramidImageFilter.h... Generating docs for file itkMultiResolutionImageRegistrationMethod2.h... Generating docs for file itkMultiResolutionImageRegistrationMethodWithFeatures.h... Generating docs for file itkMultiResolutionShrinkPyramidImageFilter.h... Generating docs for file itkNDImageBase.h... Generating docs for file itkNDImageTemplate.h... Generating docs for file itkNormalizedGradientCorrelationImageToImageMetric.h... Generating docs for file itkOpenCL.h... Generating docs for file itkOpenCLBuffer.h... Generating docs for file itkOpenCLCommandQueue.h... Generating docs for file itkOpenCLContext.h... Generating docs for file itkOpenCLDevice.h... Generating docs for file itkOpenCLEvent.h... Generating docs for file itkOpenCLEventList.h... Generating docs for file itkOpenCLExport.h... Generating docs for file itkOpenCLExtension.h... Generating docs for file itkOpenCLGlobal.h... Generating docs for file itkOpenCLImage.h... Generating docs for file itkOpenCLImageFormat.h... Generating docs for file itkOpenCLKernel.h... Generating docs for file itkOpenCLKernelManager.h... Generating docs for file itkOpenCLKernelToImageBridge.h... Generating docs for file itkOpenCLLogger.h... Generating docs for file itkOpenCLMacro.h... Generating docs for file itkOpenCLMemoryObject.h... Generating docs for file itkOpenCLOstreamSupport.h... Generating docs for file itkOpenCLPlatform.h... Generating docs for file itkOpenCLProfilingTimeProbe.h... Generating docs for file itkOpenCLProgram.h... Generating docs for file itkOpenCLSampler.h... Generating docs for file itkOpenCLSetup.h... Generating docs for file itkOpenCLSize.h... Generating docs for file itkOpenCLStringUtils.h... Generating docs for file itkOpenCLUserEvent.h... Generating docs for file itkOpenCLUtil.h... Generating docs for file itkOpenCLVector.h... Generating docs for file itkOpenCLVectorBaparameter:1107: warning: Unsupported xml/html tag found parameter:1802: warning: Found unknown command '\beta' parameter:1804: warning: Found unknown command '\Sigma' parameter:1804: warning: Found unknown command '\beta' parameter:1804: warning: Found unknown command '\Sigma' parameter:1804: warning: Found unknown command '\beta' parameter:1804: warning: Found unknown command '\sigma_0' parameter:1807: warning: Found unknown command '\sigma_0' todo:11: warning: explicit link request to 'define' could not be resolved se.h... Generating docs for file itkParabolicErodeDilateImageFilter.h... Generating docs for file itkParabolicErodeImageFilter.h... Generating docs for file itkParabolicMorphUtils.h... Generating docs for file itkParameterFileParser.h... Generating docs for file itkParameterMapInterface.h... Generating docs for file itkParzenWindowHistogramImageToImageMetric.h... Generating docs for file itkParzenWindowMutualInformationImageToImageMetric.h... Generating docs for file itkParzenWindowNormalizedMutualInformationImageToImageMetric.h... Generating docs for file itkPatternIntensityImageToImageMetric.h... Generating docs for file itkPCAMetric.h... Generating docs for file itkPCAMetric2.h... Generating docs for file itkPCAMetric_F_multithreaded.h... Generating docs for file itkPolydataDummyPenalty.h... Generating docs for file itkPreconditionedASGDOptimizer.h... Generating docs for file itkPreconditionedGradientDescentOptimizer.h... Generating docs for file itkQuasiNewtonLBFGSOptimizer.h... Generating docs for file itkRecursiveBSplineInterpolationWeightFunction.h... Generating docs for file itkRecursiveBSplineTransform.h... Generating docs for file itkRecursiveBSplineTransformImplementation.h... Generating docs for file itkReducedDimensionBSplineInterpolateImageFunction.h... Generating docs for file itkRSGDEachParameterApartBaseOptimizer.h... Generating docs for file itkRSGDEachParameterApartOptimizer.h... Generating docs for file itkScaledSingleValuedCostFunction.h... Generating docs for file itkScaledSingleValuedNonLinearOptimizer.h... Generating docs for file itkSingleValuedPointSetToPointSetMetric.h... Generating docs for file itkStackTransform.h... Generating docs for file itkStandardGradientDescentOptimizer.h... Generating docs for file itkStandardStochasticGradientDescentOptimizer.h... Generating docs for file itkStandardStochasticVarianceReducedGradientDescentOptimizer.h... Generating docs for file itkStatisticalShapePointPenalty.h... Generating docs for file itkStochasticGradientDescentOptimizer.h... Generating docs for file itkStochasticPreconditionedGradientDescentOptimizer.h... Generating docs for file itkStochasticVarianceReducedGradientDescentOptimizer.h... Generating docs for file itkSumOfPairwiseCorrelationCoefficientsMetric.h... Generating docs for file itkSumSquaredTissueVolumeDifferenceImageToImageMetric.h... Generating docs for file itkThinPlateR2LogRSplineKernelTransform2.h... Generating docs for file itkThinPlateSplineKernelTransform2.h... Generating docs for file itkTransformBendingEnergyPenaltyTerm.h... Generating docs for file itkTransformIOFactoryRegisterManager.h... Generating docs for file itkTransformixInputPointFileReader.h... Generating docs for file itkTransformPenaltyTerm.h... Generating docs for file itkTransformRigidityPenaltyTerm.h... Generating docs for file itkTransformToDeterminantOfSpatialJacobianSource.h... Generating docs for file itkTransformToSpatialJacobianSource.h... Generating docs for file itkTranslationTransformInitializer.h... Generating docs for file itkUpsampleBSplineParametersFilter.h... Generating docs for file itkUseMevisDicomTiff.h... Generating docs for file itkVarianceOverLastDimensionImageMetric.h... Generating docs for file itkVectorContainerSource.h... Generating docs for file itkVectorDataContainer.h... Generating docs for file itkVectorMeanDiffusionImageFilter.h... Generating docs for file itkVolumeSplineKernelTransform2.h... Generating docs for file itkWeightedCombinationTransform.h... Generating docs for file MainPage.dox... Generating docs for file Modules.dox... Generating docs for file transformixlib.h... Generating docs for file TypeList.h... Generating docs for file vnl_adjugate_fixed.h... Generating docs for file xoutbase.h... Generating docs for file xoutcell.h... Generating docs for file xoutmain.h... Generating docs for file xoutrow.h... Generating docs for file xoutsimple.h... Generating page documentation... Generating docs for page parameter... Generating docs for page todo... Generating docs for page deprecated... Generating docs for page transformparameter... Generating docs for page commandlinearg... Generating group documentation... Generating dependency graph for group Common Generating dependency graph for group ANNwrap Generating dependency graph for group Miscellaneous Generating dependency graph for group ParameterFileParser Generating dependency graph for group Timer Generating dependency graph for group xout Generating dependency graph for group Components Generating dependency graph for group ImageSamplers Generating dependency graph for group Interpolators Generating dependency graph for group Metrics Generating dependency graph for group Optimizers Generating dependency graph for group Registrations Generating dependency graph for group ResampleInterpolators Generating dependency graph for group Resamplers Generating dependency graph for group Transforms Generating dependency graph for group ImagePyramids Generating dependency graph for group Core Generating dependency graph for group ComponentBaseClasses Generating dependency graph for group Configuration Generating dependency graph for group Install Generating dependency graph for group Kernel Generating dependency graph for group Main Generating class documentation... Generating docs for compound AffineTransform... Generating docs for compound ANNbd_tree... Generating docs for compound ANNbruteForce... Generating docs for compound ANNkd_tree... Generating docs for compound ANNpointSet... Generating docs for compound BSplineInterpolationWeightFunction... Generating docs for compound BSplineTransform... Generating docs for compound CompositeTransform... Generating docs for compound DistancePreservingRigidityPenalty... Generating docs for compound ElastixFilter... Generating docs for compound Euler2DTransform... Generating docs for compound Euler3DTransform... Generating docs for compound GPUAdvancedBSplineDeformableTransformFactory... Generating docs for compound GPUAdvancedCombinationTransformFactory... Generating docs for compound GPUAdvancedEuler2DTransformFactory... Generating docs for compound GPUAdvancedEuler3DTransformFactory... Generating docs for compound GPUAdvancedMatrixOffsetTransformBaseFactory... Generating docs for compound GPUAdvancedSimilarity2DTransformFactory... Generating docs for compound GPUAdvancedSimilarity3DTransformFactory... Generating docs for compound GPUAdvancedTranslationTransformFactory... Generating docs for compound GPUAffineTransformFactory... Generating docs for compound GPUBSplineTransformFactory... Generating docs for compound GPUCompositeTransformBaseBase... Generating docs for compound GPUCompositeTransformFactory... Generating docs for compound GPUEuler2DTransformFactory... Generating docs for compound GPUEuler3DTransformFactory... Generating docs for compound GPUIdentityTransformFactory... Generating docs for compound GPUImageBase... Generating docs for compound GPUImageFunction... Generating docs for compound GPUSimilarity2DTransformFactory... Generating docs for compound GPUSimilarity3DTransformFactory... Generating docs for compound GPUTranslationTransformFactory... Generating docs for compound IdentityTransform... Generating docs for compound Image... Generating docs for compound ImageFileWriter... Generating docs for compound ImageIOBase... Generating docs for compound LoggerBase... Generating docs for compound ResampleBase... Generating docs for compound Similarity2DTransform... Generating docs for compound Similarity3DTransform... Generating docs for compound SingleValuedCostFunction... Generating docs for compound SingleValuedNonLinearOptimizer... Generating docs for compound StatisticsImageFilter... Generating docs for compound TAnyITKTransform... Generating docs for compound TransformixFilter... Generating docs for compound TranslationStackTransform... Generating docs for compound TranslationTransform... Generating docs for compound Array2D< PRatioType >... Generating docs for compound Array< PDFValueType >... Generating docs for compound bool... Generating docs for compound double... Generating docs for compound FixedArray< double, Self::MovingImageDim/build/elastix-TRdtE2/elastix-5.0.1/Core/Main/elastixlib.h:84: warning: explicit link request to 'define' could not be resolved ension >... Generating docs for compound int... Generating docs for compound unsigned int... Generating docs for compound vnl_matrix< DerivativeValueType >... Generating docs for compound vnl_matrix< RealType >... Generating docs for compound vnl_vector< double >... Generating namespace index... Generating docs for namespace elastix Generating docs for compound elastix::AdaGrad... Generating docs for compound elastix::AdaptiveStochasticGradientDescent... Generating docs for compound elastix::AdaptiveStochasticLBFGS... Generating docs for nested compound elastix::AdaptiveStochasticLBFGS::MultiThreaderParameterType... Generating docs for nested compound elastix::AdaptiveStochasticLBFGS::SettingsType... Generating docs for compound elastix::AdaptiveStochasticVarianceReducedGradient... Generating docs for nested compound elastix::AdaptiveStochasticVarianceReducedGradient::MultiThreaderParameterType... Generating docs for nested compound elastix::AdaptiveStochasticVarianceReducedGradient::SettingsType... Generating docs for compound elastix::AdvancedAffineTransformElastix... Generating docs for compound elastix::AdvancedBSplineTransform... Generating docs for compound elastix::AdvancedKappaStatisticMetric... Generating docs for compound elastix::AdvancedMattesMutualInformationMetric... Generating docs for compound elastix::AdvancedMeanSquaresMetric... Generating docs for compound elastix::AdvancedNormalizedCorrelationMetric... Generating docs for compound elastix::AffineDTITransformElastix... Generating docs for compound elastix::AffineLogStackTransform... Generating docs for compound elastix::AffineLogTransformElastix... Generating docs for compound elastix::BaseComponent... Generating docs for compound elastix::BaseComponentSE... Generating docs for compound elastix::BSplineInterpolator... Generating docs for compound elastix::BSplineInterpolatorFloat... Generating docs for compound elastix::BSplineResampleInterpolator... Generating docs for compound elastix::BSplineResampleInterpolatorFloat... Generating docs for compound elastix::BSplineStackTransform... Generating docs for compound elastix::BSplineTransformWithDiffusion... Generating docs for compound elastix::CMAEvolutionStrategy... Generating docs for compound elastix::ComponentDatabase... Generating docs for compound elastix::ComponentLoader... Generating docs for compound elastix::Configuration... Generating docs for compound elastix::ConjugateGradient... Generating docs for compound elastix::ConjugateGradientFRPR... Generating docs for compound elastix::CorrespondingPointsEuclideanDistanceMetric... Generating docs for compound elastix::DeformationFieldTransform... Generating docs for compound elastix::DisplacementMagnitudePenalty... Generating docs for compound elastix::DistancePreservingRigidityPenalty... Generating docs for compound elastix::ELASTIX... Generating docs for compound elastix::ElastixBase... Generating docs for nested compound elastix::ElastixBase::MultipleDataObjectFiller... Generating docs for nested compound elastix::ElastixBase::MultipleImageLoader... Generating docs for compound elastix::ElastixFilter... Generating docs for compound elastix::ElastixMain... Generating docs for compound elastix::ElastixTemplate... Generating docs for compound elastix::EulerStackTransform... Generating docs for compound elastix::EulerTransformElastix... Generating docs for compound elastix::FiniteDifferenceGradientDescent... Generating docs for compound elastix::FixedGenericPyramid... Generating docs for compound elastix::FixedImagePyramidBase... Generating docs for compound elastix::FixedRecursivePyramid... Generating docs for compound elastix::FixedShrinkingPyramid... Generating docs for compound elastix::FixedSmoothingPyramid... Generating docs for compound elastix::FullSampler... Generating docs for compound elastix::FullSearch... Generating docs for compound elastix::GradientDifferenceMetric... Generating docs for compound elastix::GridSampler... Generating docs for compound elastix::ImageSamplerBase... Generating docs for compound elastix::InstallFunctions... /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/MissingStructurePenalty/elxMissingStructurePenalty.h:33: warning: End of list marker found without any preceding list items /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/MissingStructurePenalty/elxMissingStructurePenalty.h:50: warning: Unsupported xml/html tag found /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/PolydataDummyPenalty/elxPolydataDummyPenalty.h:37: warning: Unsupported xml/html tag found /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/StatisticalShapePenalty/elxStatisticalShapePenalty.h:38: warning: Found unknown command '\beta' /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/StatisticalShapePenalty/elxStatisticalShapePenalty.h:40: warning: Found unknown command '\Sigma' /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/StatisticalShapePenalty/elxStatisticalShapePenalty.h:40: warning: Found unknown command '\beta' /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/StatisticalShapePenalty/elxStatisticalShapePenalty.h:40: warning: Found unknown command '\Sigma' /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/StatisticalShapePenalty/elxStatisticalShapePenalty.h:40: warning: Found unknown command '\beta' /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/StatisticalShapePenalty/elxStatisticalShapePenalty.h:40: warning: Found unknown command '\sigma_0' /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/StatisticalShapePenalty/elxStatisticalShapePenalty.h:43: warning: Found unknown command '\sigma_0' Generating docs for compound elastix::InterpolatorBase... Generating docs for compound elastix::KNNGraphAlphaMutualInformationMetric... Generating docs for compound elastix::LinearInterpolator... Generating docs for compound elastix::LinearResampleInterpolator... Generating docs for compound elastix::MetricBase... Generating docs for compound elastix::MissingStructurePenalty... Generating docs for compound elastix::MovingGenericPyramid... Generating docs for compound elastix::MovingImagePyramidBase... Generating docs for compound elastix::MovingRecursivePyramid... Generating docs for compound elastix::MovingShrinkingPyramid... Generating docs for compound elastix::MovingSmoothingPyramid... Generating docs for compound elastix::MultiBSplineTransformWithNormal... Generating docs for compound elastix::MultiInputRandomCoordinateSampler... Generating docs for compound elastix::MultiMetricMultiResolutionRegistration... Generating docs for compound elastix::MultiResolutionRegistration... Generating docs for compound elastix::MultiResolutionRegistrationWithFeatures... Generating docs for compound elastix::MutualInformationHistogramMetric... Generating docs for compound elastix::MyStandardResampler... Generating docs for compound elastix::NearestNeighborInterpolator... Generating docs for compound elastix::NearestNeighborResampleInterpolator... Generating docs for compound elastix::NormalizedGradientCorrelationMetric... Generating docs for compound elastix::NormalizedMutualInformationMetric... Generating docs for compound elastix::OpenCLFixedGenericPyramid... Generating docs for compound elastix::OpenCLMovingGenericPyramid... Generating docs for compound elastix::OpenCLResampler... Generating docs for compound elastix::OptimizerBase... Generating docs for compound elastix::ParameterObject... Generating docs for compound elastix::PatternIntensityMetric... Generating docs for compound elastix::PCAMetric... Generating docs for compound elastix::PCAMetric2... Generating docs for compound elastix::PolydataDummyPenalty... Generating docs for compound elastix::Powell... Generating docs for compound elastix::PreconditionedGradientDescent... Generating docs for nested compound elastix::PreconditionedGradientDescent::SettingsType... Generating docs for compound elastix::PreconditionedStochasticGradientDescent... Generating docs for nested compound elastix::PreconditionedStochasticGradientDescent::SettingsType... Generating docs for compound elastix::ProgressCommand... Generating docs for compound elastix::QuasiNewtonLBFGS... Generating docs for compound elastix::RandomCoordinateSampler... Generating docs for compound elastix::RandomSampler... Generating docs for compound elastix::RandomSamplerSparseMask... Generating docs for compound elastix::RayCastInterpolator... Generating docs for compound elastix::RayCastResampleInterpolator... Generating docs for compound elastix::RecursiveBSplineTransform... Generating docs for compound elastix::ReducedDimensionBSplineInterpolator... Generating docs for compound elastix::ReducedDimensionBSplineResampleInterpolator... Generating docs for compound elastix::RegistrationBase... Generating docs for compound elastix::RegularStepGradientDescent... Generating docs for compound elastix::ResampleInterpolatorBase... Generating docs for compound elastix::ResamplerBase... Generating docs for compound elastix::RSGDEachParameterApart... Generating docs for compound elastix::SimilarityTransformElastix... Generating docs for compound elastix::Simplex... Generating docs for compound elastix::SimultaneousPerturbation... Generating docs for compound elastix::SplineKernelTransform... Generating docs for compound elastix::StandardGradientDescent... Generating docs for compound elastix::StatisticalShapePenalty... Generating docs for compound elastix::SumOfPairwiseCorrelationCoefficientsMetric... Generating docs for compound elastix::SumSquaredTissueVolumeDifferenceMetric... Generating docs for compound elastix::TransformBase... Generating docs for compound elastix::TransformBendingEnergyPenalty... Generating docs for com/build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCL.h:35: warning: Found unknown command '\value' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCL.h:36: warning: Found unknown command '\value' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCL.h:37: warning: Found unknown command '\value' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCL.h:38: warning: Found unknown command '\value' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCL.h:39: warning: Found unknown command '\value' /build/elastix-TRdtE2/elastix-5.0.1/Common/itkAdvancedLinearInterpolateImageFunction.h:58: warning: Found unknown command '\wiki' /build/elastix-TRdtE2/elastix-5.0.1/Common/itkAdvancedLinearInterpolateImageFunction.h:59: warning: Found unknown command '\wikiexample' /build/elastix-TRdtE2/elastix-5.0.1/Common/itkAdvancedLinearInterpolateImageFunction.h:60: warning: Found unknown command '\endwiki' pound elastix::TransformixFilter... Generating docs for compound elastix::TransformixMain... Generating docs for compound elastix::TransformRigidityPenalty... Generating docs for compound elastix::TranslationStackTransform... Generating docs for compound elastix::TranslationTransformElastix... Generating docs for compound elastix::VarianceOverLastDimensionMetric... Generating docs for compound elastix::ViolaWellsMutualInformationMetric... Generating docs for compound elastix::WeightedCombinationTransformElastix... Generating docs for namespace itk Generating docs for compound itk::AdaptiveStepsizeOptimizer... Generating docs for compound itk::AdaptiveStochasticGradientDescentOptimizer... Generating docs for compound itk::AdaptiveStochasticLBFGSOptimizer... Generating docs for compound itk::AdaptiveStochasticPreconditionedGradientDescentOptimizer... Generating docs for compound itk::AdaptiveStochasticVarianceReducedGradientOptimizer... Generating docs for compound itk::AdvancedBSplineDeformableTransform... Generating docs for compound itk::AdvancedBSplineDeformableTransformBase... Generating docs for compound itk::AdvancedCombinationTransform... Generating docs for compound itk::AdvancedEuler3DTransform... Generating docs for compound itk::AdvancedIdentityTransform... Generating docs for compound itk::AdvancedImageMomentsCalculator... Generating docs for nested compound itk::AdvancedImageMomentsCalculator::ComputePerThreadStruct... Generating docs for nested compound itk::AdvancedImageMomentsCalculator::MultiThreaderParameterType... Generating docs for compound itk::AdvancedImageToImageMetric... Generating docs for nested compound itk::AdvancedImageToImageMetric::GetValueAndDerivativePerThreadStruct... Generating docs for nested compound itk::AdvancedImageToImageMetric::GetValuePerThreadStruct... Generating docs for nested compound itk::AdvancedImageToImageMetric::MultiThreaderParameterType... Generating docs for compound itk::AdvancedKappaStatisticImageToImageMetric... Generating docs for nested compound itk::AdvancedKappaStatisticImageToImageMetric::KappaGetValueAndDerivativePerThreadStruct... Generating docs for nested compound itk::AdvancedKappaStatisticImageToImageMetric::MultiThreaderAccumulateDerivativeType... Generating docs for compound itk::AdvancedLinearInterpolateImageFunction... Generating docs for compound itk::AdvancedMatrixOffsetTransformBase... Generating docs for compound itk::AdvancedMeanSquaresImageToImageMetric... Generating docs for compound itk::AdvancedNormalizedCorrelationImageToImageMetric... Generating docs for nested compound itk::AdvancedNormalizedCorrelationImageToImageMetric::CorrelationGetValueAndDerivativePerThreadStruct... Generating docs for nested compound itk::AdvancedNormalizedCorrelationImageToImageMetric::MultiThreaderAccumulateDerivativeType... Generating docs for compound itk::AdvancedRayCastInterpolateImageFunction... Generating docs for compound itk::AdvancedRigid2DTransform... Generating docs for compound itk::AdvancedRigid3DTransform... Generating docs for compound itk::AdvancedSimilarity2DTransform... Generating docs for compound itk::AdvancedSimilarity3DTransform... Generating docs for compound itk::AdvancedTransform... Generating docs for compound itk::AdvancedTranslationTransform... Generating docs for compound itk::AdvancedVersorRigid3DTransform... Generating docs for compound itk::AdvancedVersorTransform... Generating docs for compound itk::AffineDTI2DTransform... Generating docs for compound itk::AffineDTI3DTransform... Generating docs for compound itk::AffineLogTransform... Generating docs for compound itk::ANNbdTree... Generating docs for compound itk::ANNBinaryTreeCreator... Generating docs for compound itk::ANNBruteForceTree... Generating docs for compound itk::ANNFixedRadiusTreeSearch... Generating docs for compound itk::ANNkDTree... Generating docs for compound itk::ANNPriorityTreeSearch... Generating docs for compound itk::ANNStandardTreeSearch... Generating docs for compound itk::BinaryANNTreeBase... Generating docs for compound itk::BinaryANNTreeSearchBase... G/build/elastix-TRdtE2/elastix-5.0.1/Common/itkComputeImageExtremaFilter.h:43: warning: Found unknown command '\wiki' /build/elastix-TRdtE2/elastix-5.0.1/Common/itkComputeImageExtremaFilter.h:44: warning: Found unknown command '\wikiexample' /build/elastix-TRdtE2/elastix-5.0.1/Common/itkComputeImageExtremaFilter.h:45: warning: Found unknown command '\endwiki' enerating docs for compound itk::BinaryTreeBase... Generating docs for compound itk::BinaryTreeSearchBase... Generating docs for compound itk::BSplineDerivativeKernelFunction2... Generating docs for compound itk::BSplineInterpolationDerivativeWeightFunction... Generating docs for compound itk::BSplineInterpolationSecondOrderDerivativeWeightFunction... Generating docs for compound itk::BSplineInterpolationWeightFunction2... Generating docs for compound itk::BSplineInterpolationWeightFunctionBase... Generating docs for compound itk::BSplineKernelFunction2... Generating docs for compound itk::BSplineSecondOrderDerivativeKernelFunction2... Generating docs for compound itk::CenteredTransformInitializer2... Generating docs for compound itk::CMAEvolutionStrategyOptimizer... Generating docs for compound itk::CombinationImageToImageMetric... Generating docs for compound itk::ComputeDisplacementDistribution... Generating docs for nested compound itk::ComputeDisplacementDistribution::ComputePerThreadStruct... Generating docs for nested compound itk::ComputeDisplacementDistribution::MultiThreaderParameterType... Generating docs for compound itk::ComputeImageExtremaFilter... Generating docs for compound itk::ComputeJacobianTerms... Generating docs for compound itk::ComputePreconditionerUsingDisplacementDistribution... Generating docs for compound itk::CorrespondingPointsEuclideanDistancePointMetric... Generating docs for compound itk::CyclicBSplineDeformableTransform... Generating docs for compound itk::CyclicGridScheduleComputer... Generating docs for compound itk::DeformationFieldInterpolatingTransform... Generating docs for compound itk::DeformationFieldRegulizer... Generating docs for compound itk::DeformationVectorFieldTransform... Generating docs for compound itk::DisplacementMagnitudePenaltyTerm... Generating docs for compound itk::DistancePreservingRigidityPenaltyTerm... Generating docs for compound itk::ElasticBodyReciprocalSplineKernelTransform2... Generating docs for compound itk::ElasticBodySplineKernelTransform2... Generating docs for compound itk::ErodeMaskImageFilter... Generating docs for compound itk::EulerTransform... Generating docs for compound itk::EulerTransform< TScalarType, 3 >... Generating docs for compound itk::ExponentialLimiterFunction... Generating docs for compound itk::FiniteDifferenceGradientDescentOptimizer... Generating docs for compound itk::FullSearchOptimizer... Generating docs for compound itk::GenericConjugateGradientOptimizer... Generating docs for compound itk::GenericMultiResolutionPyramidImageFilter... Generating docs for compound itk::GetConstNumberOfIndicesHack... Generating docs for compound itk::GetConstNumberOfIndicesHack< SplineOrder, 0 >... Generating docs for compound itk::GPUAdvancedBSplineDeformableTransform... Generating docs for compound itk::GPUAdvancedBSplineDeformableTransformFactory2... Generating docs for compound itk::GPUAdvancedCombinationTransform... Generating docs for compound itk::GPUAdvancedCombinationTransformCopier... Generating docs for nested compound itk::GPUAdvancedCombinationTransformCopier::TransformSpaceDimensionToType... Generating docs for compound itk::GPUAdvancedCombinationTransformFactory2... Generating docs for compound itk::GPUAdvancedEuler2DTransform... Generating docs for compound itk::GPUAdvancedEuler2DTransformFactory2... Generating docs for compound itk::GPUAdvancedEuler3DTransform... Generating docs for compound itk::GPUAdvancedEuler3DTransformFactory2... Generating docs for compound itk::GPUAdvancedMatrixOffsetTransformBase... Generating docs for compound itk::GPUAdvancedMatrixOffsetTransformBaseFactory2... Generating docs for compound itk::GPUAdvancedSimilarity2DTransform... Generating docs for compound itk::GPUAdvancedSimilarity2DTransformFactory2... Generating docs for compound itk::GPUAdvancedSimilarity3DTransform... Generating docs for compound itk::GPUAdvancedSimilarity3DTransformFactory2... Generating docs for compound itk::GPUAdvancedTranslationTransform... Generating docs for compound itk::GPUAdvancedTranslationTransformFactory2... Generating docs for compound itk::GPUAffineTransform... Generating docs for compound itk::GPUAffineTransformFactory2... Generating docs for compound itk::GPUBSplineBaseTransform... Generating docs for compound itk::GPUBSplineDecompositionImageFilter... Generating docs for compound itk::GPUBSplineDecompositionImageFilterFactory2... Generating docs for compound itk::GPUBSplineInterpolateImageFunction... Generating docs for compound itk::GPUBSplineInterpolateImageFunctionFactory2... Generating docs for compound itk::GPUBSplineTransform... Generating docs for compound itk::GPUBSplineTransformFactory2... Generating docs for compound itk::GPUCastImageFilter... Generating docs for compound itk::GPUCastImageFilterFactory2... Generating docs for compound itk::GPUCompositeTransform... Generating docs for compound itk::GPUCompositeTransformBase... Generating docs for compound itk::GPUCompositeTransformCopier... Generating docs for compound itk::GPUCompositeTransformFactory2... Generating docs for compound itk::GPUDataManager... Generating docs for compound itk::GPUEuler2DTransform... Generating docs for compound itk::GPUEuler2DTransformFactory2... Generating docs for compound itk::GPUEuler3DTransform... Generating docs for compound itk::GPUEuler3DTransformFactory2... Generating docs for compound itk::GPUIdentityTransform... Generating docs for compound itk::GPUIdentityTransformFactory2... Generating docs for compound itk::GPUImage... Generating docs for compound itk::GPUImageBase1D... Generating docs for compound itk::GPUImageBase2D... Generating docs for compound itk::GPUImageBase3D... Generating docs for compound itk::GPUImageDataManager... Generating docs for compound itk::GPUImageFactory2... Generating docs for compound itk::GPUImageToImageFilter... Generating docs for compound itk::GPUInPlaceImageFilter... Generating docs for compound itk::GPUInterpolateImageFunction... Generating docs for compound itk::GPUInterpolatorBase... Generating docs for compound itk::GPUInterpolatorCopier... Generating docs for compound itk::GPULinearInterpolateImageFunction... Generating docs for compound itk::GPULinearInterpolateImageFunctionFactory2... Generating docs for compound itk::GPUMatrixOffsetTransformBase... Generating docs for compound itk::GPUNearestNeighborInterpolateImageFunction... Generating docs for compound itk::GPUNearestNeighborInterpolateImageFunctionFactory2... Generating docs for compound itk::GPUObjectFactoryBase... Generating docs for compound itk::GPURecursiveGaussianImageFilter... Generating docs for compound itk::GPURecursiveGaussianImageFilterFactory2... Generating docs for compound itk::GPUResampleImageFilter... Generating docs for compound itk::GPUResampleImageFilterFactory2... Generating docs for compound itk::GPUShrinkImageFilter... Generating docs for compound itk::GPUShrinkImageFilterFactory2... Generating docs for compound itk::GPUSimilarity2DTransform... Generating docs for compound itk::GPUSimilarity2DTransformFactory2... Generating docs for compound itk::GPUSimilarity3DTransform... Generating docs for compound itk::GPUSimilarity3DTransformFactory2... Generating docs for compound itk::GPUTransformBase... Generating docs for compound itk::GPUTransformCopier... Generating docs for nested compound itk::GPUTransformCopier::TransformSpaceDimensionToType... Generating docs for compound itk::GPUTranslationTransform... Generating docs for compound itk::GPUTranslationTransformBase... Generating docs for compound itk::GPUTranslationTransformFactory2... Generating docs for compound itk::GPUUnaryFunctorImageFilter... Generating docs for compound itk::GradientDescentOptimizer2... Generating docs for compound itk::GradientDifferenceImageToImageMetric... Generating docs for compound itk::GridScheduleComputer... Generating docs for compound itk::HardLimiterFunction... Generating docs for compound itk::ImageFileCastWriter... Generating docs for compound itk::ImageFullSampler... Generating docs for compound itk::ImageGridSampler... Generating docs for compound itk::ImageIOFactoryRegisterManager... Generating docs for compound itk::I/build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLContext.h:41: warning: Found unknown command '\table' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLContext.h:42: warning: Found unknown command '\row' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLContext.h:42: warning: Found unknown command '\o' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLContext.h:42: warning: Found unknown command '\o' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLContext.h:43: warning: Found unknown command '\row' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLContext.h:43: warning: Found unknown command '\o' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLContext.h:43: warning: Found unknown command '\o' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLContext.h:44: warning: Found unknown command '\row' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLContext.h:44: warning: Found unknown command '\o' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLContext.h:44: warning: Found unknown command '\o' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLContext.h:46: warning: Found unknown command '\row' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLContext.h:46: warning: Found unknown command '\o' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLContext.h:46: warning: Found unknown command '\o' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLContext.h:49: warning: Found unknown command '\endtable' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLContext.h:165: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLContext.h:211: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLContext.h:211: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLContext.h:202: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLContext.h:182: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLContext.h:184: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLContext.h:435: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:34: warning: Found unknown command '\table' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:35: warning: Found unknown command '\row' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:35: warning: Found unknown command '\o' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:35: warning: Found unknown command '\o' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:36: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:37: warning: Found unknown command '\row' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:37: warning: Found unknown command '\o' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:37: warning: Found unknown command '\o' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:39: warning: Found unknown command '\row' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:39: warning: Found unknown command '\o' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:39: warning: Found unknown command '\o' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:41: warning: Found unknown command '\row' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:41: warning: Found unknown command '\o' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:41: warning: Found unknown command '\o' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:44: warning: Found unknown command '\row' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:44: warning: Found unknown command '\o' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:44: warning: Found unknown command '\o' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:46: warning: Found unknown command '\row' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:46: warning: Found unknown command '\o' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:46: warning: Found unknown command '\o' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:47: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:48: warning: Found unknown command '\endtable' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:329: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:330: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:325: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:336: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:337: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:437: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:257: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:258: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:287: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:288: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:291: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:281: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:282: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:295: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:296: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:299: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:269: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:270: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:275: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:276: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:263: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:264: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:213: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:214: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:240: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:241: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:244: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:234: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:235: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:248: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:249: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:252: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:223: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:224: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:228: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:229: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:218: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:219: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:105: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:136: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:137: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:141: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:141: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:142: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:145: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLDevice.h:186: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLEvent.h:36: warning: Found unknown command '\table' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLEvent.h:37: warning: Found unknown command '\row' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLEvent.h:37: warning: Found unknown command '\o' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLEvent.h:37: warning: Found unknown command '\o' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLEvent.h:38: warning: Found unknown command '\row' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLEvent.h:38: warning: Found unknown command '\o' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLEvent.h:38: warning: Found unknown command '\o' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLEvent.h:40: warning: Found unknown command '\row' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLEvent.h:40: warning: Found unknown command '\o' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLEvent.h:40: warning: Found unknown command '\o' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLEvent.h:41: warning: Found unknown command '\row' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLEvent.h:41: warning: Found unknown command '\o' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLEvent.h:41: warning: Found unknown command '\o' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLEvent.h:42: warning: Found unknown command '\row' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLEvent.h:42: warning: Found unknown command '\o' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLEvent.h:42: warning: Found unknown command '\o' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLEvent.h:43: warning: Found unknown command '\endtable' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLEvent.h:47: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLEvent.h:76: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLEvent.h:107: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLEvent.h:111: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLEvent.h:151: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLEvent.h:151: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLEvent.h:151: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLEvent.h:151: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLEvent.h:115: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLEvent.h:116: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLKernel.h:42: warning: Invalid section id 'Executing'; ignoring section /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLKernel.h:183: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLKernel.h:191: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLKernel.h:260: warning: Found unknown command '\not' /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLMemoryObject.h:138: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLPlatform.h:112: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLPlatform.h:84: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLSampler.h:37: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLSampler.h:37: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLSampler.h:41: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLSampler.h:41: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLSampler.h:42: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLSampler.h:42: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLSampler.h:42: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLSampler.h:87: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLSampler.h:91: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLSampler.h:95: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLSampler.h:96: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLUserEvent.h:47: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLUserEvent.h:51: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLUserEvent.h:83: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLUserEvent.h:90: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLUserEvent.h:91: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLUserEvent.h:108: warning: expected whitespace after \c command /build/elastix-TRdtE2/elastix-5.0.1/Common/OpenCL/ITKimprovements/itkOpenCLUserEvent.h:102: warning: expected whitespace after \c command mageRandomCoordinateSampler... Generating docs for compound itk::ImageRandomSampler... Generating docs for compound itk::ImageRandomSamplerBase... Generating docs for compound itk::ImageRandomSamplerSparseMask... Generating docs for compound itk::ImageSample... Generating docs for compound itk::ImageSamplerBase... Generating docs for compound itk::ImageToImageMetricWithFeatures... Generating docs for compound itk::ImageToVectorContainerFilter... Generating docs for nested compound itk::ImageToVectorContainerFilter::ThreadStruct... Generating docs for compound itk::KernelFunctionBase2... Generating docs for compound itk::KernelTransform2... Generating docs for compound itk::KNNGraphAlphaMutualInformationImageToImageMetric... Generating docs for compound itk::LimiterFunctionBase... Generating docs for compound itk::LineSearchOptimizer... Generating docs for compound itk::MeshFileReaderBase... Generating docs for compound itk::MeshIOFactoryRegisterManager... Generating docs for compound itk::MeshPenalty... Generating docs for compound itk::MevisDicomTiffImageIO... Generating docs for compound itk::MevisDicomTiffImageIOFactory... Generating docs for compound itk::MissingVolumeMeshPenalty... Generating docs for compound itk::MoreThuenteLineSearchOptimizer... Generating docs for compound itk::MultiBSplineDeformableTransformWithNormal... Generating docs for compound itk::MultiInputImageRandomCoordinateSampler... Generating docs for compound itk::MultiInputImageToImageMetricBase... Generating docs for compound itk::MultiInputMultiResolutionImageRegistrationMethodBase... Generating docs for compound itk::MultiMetricMultiResolutionImageRegistrationMethod... Generating docs for compound itk::MultiOrderBSplineDecompositionImageFilter... Generating docs for compound itk::MultiResolutionGaussianSmoothingPyramidImageFilter... Generating docs for compound itk::MultiResolutionImageRegistrationMethod2... Generating docs for compound itk::MultiResolutionImageRegistrationMethodWithFeatures... Generating docs for compound itk::MultiResolutionShrinkPyramidImageFilter... Generating docs for compound itk::NDImageBase... Generating docs for compound itk::NDImageTemplate... Generating docs for compound itk::NormalizedGradientCorrelationImageToImageMetric... Generating docs for compound itk::OpenCLBuffer... Generating docs for compound itk::OpenCLCommandQueue... Generating docs for compound itk::OpenCLCompileError... Generating docs for compound itk::OpenCLContext... Generating docs for compound itk::OpenCLDefaultImageDimentions... Generating docs for compound itk::OpenCLDevice... Generating docs for compound itk::OpenCLEvent... Generating docs for compound itk::OpenCLEventList... Generating docs for compound itk::OpenCLImage... Generating docs for compound itk::OpenCLImageFormat... Generating docs for compound itk::OpenCLKernel... Generating docs for compound itk::OpenCLKernelManager... Generating docs for nested compound itk::OpenCLKernelManager::KernelArgumentList... Generating docs for compound itk::OpenCLKernelToImageBridge... Generating docs for compound itk::OpenCLLogger... Generating docs for compound itk::OpenCLMemoryObject... Generating docs for compound itk::OpenCLPlatform... Generating docs for compound itk::OpenCLProfilingTimeProbe... Generating docs for compound itk::OpenCLProgram... Generating docs for compound itk::OpenCLSampler... Generating docs for compound itk::OpenCLSize... Generating docs for nested compound itk::OpenCLSize::Null... Generating docs for compound itk::OpenCLUserEvent... Generating docs for compound itk::OpenCLVector... Generating docs for compound itk::OpenCLVectorBase... Generating docs for compound itk::ParabolicErodeDilateImageFilter... Generating docs for compound itk::ParabolicErodeImageFilter... Generating docs for compound itk::ParameterFileParser... Generating docs for compound itk::ParameterMapInterface... Generating docs for compound itk::ParzenWindowHistogramImageToImageMetric... Generating docs for nested compound itk::ParzenWindowHistogramImageToImageMetric::ParzenWindowHistogramGetValueAndDerivati/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/AdvancedMattesMutualInformation/itkParzenWindowMutualInformationImageToImageMetric.h:201: warning: explicit link request to 'FixedHistogramBins' could not be resolved /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/AdvancedMattesMutualInformation/itkParzenWindowMutualInformationImageToImageMetric.h:201: warning: explicit link request to 'MovingHistogramBins' could not be resolved /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/AdvancedMattesMutualInformation/itkParzenWindowMutualInformationImageToImageMetric.h:201: warning: explicit link request to 'parameters' could not be resolved /build/elastix-TRdtE2/elastix-5.0.1/Components/Optimizers/PreconditionedGradientDescent/itkPreconditionedGradientDescentOptimizer.h:206: warning: Found unknown command '\g' /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkRecursiveBSplineTransformImplementation.h:46: warning: Unsupported xml/html tag found /build/elastix-TRdtE2/elastix-5.0.1/Common/Transforms/itkRecursiveBSplineTransformImplementation.h:379: warning: Unsupported xml/html tag found vePerThreadStruct... Generating docs for nested compound itk::ParzenWindowHistogramImageToImageMetric::ParzenWindowHistogramMultiThreaderParameterType... Generating docs for compound itk::ParzenWindowMutualInformationImageToImageMetric... Generating docs for nested compound itk::ParzenWindowMutualInformationImageToImageMetric::ParzenWindowMutualInformationMultiThreaderParameterType... Generating docs for compound itk::ParzenWindowNormalizedMutualInformationImageToImageMetric... Generating docs for compound itk::PatternIntensityImageToImageMetric... Generating docs for compound itk::PCAMetric... Generating docs for nested compound itk::PCAMetric::PCAMetricGetSamplesPerThreadStruct... Generating docs for nested compound itk::PCAMetric::PCAMetricMultiThreaderParameterType... Generating docs for compound itk::PCAMetric2... Generating docs for compound itk::PreconditionedASGDOptimizer... Generating docs for compound itk::PreconditionedGradientDescentOptimizer... Generating docs for compound itk::QuasiNewtonLBFGSOptimizer... Generating docs for compound itk::RecursiveBSplineInterpolationWeightFunction... Generating docs for compound itk::RecursiveBSplineTransform... Generating docs for compound itk::RecursiveBSplineTransformImplementation... Generating docs for compound itk::RecursiveBSplineTransformImplementation< OutputDimension, 0, SplineOrder, TScalar >... Generating docs for compound itk::ReducedDimensionBSplineInterpolateImageFunction... Generating docs for compound itk::RSGDEachParameterApartBaseOptimizer... Generating docs for compound itk::RSGDEachParameterApartOptimizer... Generating docs for compound itk::ScaledSingleValuedCostFunction... Generating docs for compound itk::ScaledSingleValuedNonLinearOptimizer... Generating docs for compound itk::SingleValuedPointSetToPointSetMetric... Generating docs for compound itk::StackTransform... Generating docs for compound itk::StandardGradientDescentOptimizer... Generating docs for compound itk::StandardStochasticGradientOptimizer... Generating docs for compound itk::StandardStochasticVarianceReducedGradientOptimizer... Generating docs for compound itk::StatisticalShapePointPenalty... Generating docs for compound itk::StochasticGradientDescentOptimizer... Generating docs for nested compound itk::StochasticGradientDescentOptimizer::MultiThreaderParameterType... Generating docs for compound itk::StochasticPreconditionedGradientDescentOptimizer... Generating docs for compound itk::StochasticVarianceReducedGradientDescentOptimizer... Generating docs for nested compound itk::StochasticVarianceReducedGradientDescentOptimizer::MultiThreaderParameterType... Generating docs for compound itk::SumOfPairwiseCorrelationCoefficientsMetric... Generating docs for compound itk::SumSquaredTissueVolumeDifferenceImageToImageMetric... Generating docs for compound itk::ThinPlateR2LogRSplineKernelTransform2... Generating docs for compound itk::ThinPlateSplineKernelTransform2... Generating docs for compound itk::TransformBendingEnergyPenaltyTerm... Generating docs for compound itk::TransformIOFactoryRegisterManager... Generating docs for compound itk::TransformixInputPointFileReader... Generating docs for compound itk::TransformPenaltyTerm... Generating docs for compound itk::TransformRigidityPenaltyTerm... Generating docs for compound itk::TransformToDeterminantOfSpatialJacobianSource... Generating docs for compound itk::TransformToSpatialJacobianSource... Generating docs for compound itk::TranslationTransformInitializer... Generating docs for compound itk::UpsampleBSplineParametersFilter... Generating docs for compound itk::VarianceOverLastDimensionImageMetric... Generating docs for compound itk::VectorContainerSource... Generating docs for compound itk::VectorDataContainer... Generating docs for compound itk::VectorMeanDiffusionImageFilter... Generating docs for compound itk::VolumeSplineKernelTransform2... Generating docs for compound itk::WeightedCombinationTransform... Generating docs for namespace itk::Functor Generating docs for compound itk::Functor::GPUFunctorBase... Generating docs for namespace itk::Statistics Generating docs for compound itk::Statistics::ListSampleCArray... Generating docs for namespace transformix Generating docs for compound transformix::TRANSFORMIX... Generating docs for namespace typelist Generating docs for compound typelist::VisitDimension... Generating docs for namespace xoutlibrary Generating docs for compound xoutlibrary::xoutbase... Generating docs for compound xoutlibrary::xoutcell... Generating docs for compound xoutlibrary::xoutrow... Generating docs for compound xoutlibrary::xoutsimple... Generating graph info page... Generating directory documentation... Generating dependency graph for directory AdaGrad Generating dependency graph for directory AdaptiveStochasticGradientDescent Generating dependency graph for directory AdaptiveStochasticLBFGS Generating dependency graph for directory AdaptiveStochasticVarianceReducedGradient Generating dependency graph for directory AdvancedAffineTransform Generating dependency graph for directory AdvancedBSplineTransform Generating dependency graph for directory AdvancedKappaStatistic Generating dependency graph for directory AdvancedMattesMutualInformation Generating dependency graph for directory AdvancedMeanSquares Generating dependency graph for directory AdvancedNormalizedCorrelation Generating dependency graph for directory AffineDTITransform Generating dependency graph for directory AffineLogStackTransform Generating dependency graph for directory AffineLogTransform Generating dependency graph for directory BendingEnergyPenalty Generating dependency graph for directory BSplineDeformableTransformWithDiffusion Generating dependency graph for directory BSplineInterpolator Generating dependency graph for directory BSplineInterpolatorFloat Generating dependency graph for directory BSplineResampleInterpolator Generating dependency graph for directory BSplineResampleInterpolatorFloat Generating dependency graph for directory BSplineStackTransform Generating dependency graph for directory CMAEvolutionStrategy Generating dependency graph for directory Common Generating dependency graph for directory ComponentBaseClasses Generating dependency graph for directory Components Generating dependency graph for directory Configuration Generating dependency graph for directory ConjugateGradient Generating dependency graph for directory ConjugateGradientFRPR Generating dependency graph for directory Core Generating dependency graph for directory CorrespondingPointsEuclideanDistanceMetric Generating dependency graph for directory CostFunctions Generating dependency graph for directory DeformationFieldTransform Generating dependency graph for directory DisplacementMagnitudePenalty Generating dependency graph for directory DistancePreservingRigidityPenalty Generating dependency graph for directory EulerStackTransform Generating dependency graph for directory EulerTransform Generating dependency graph for directory Factories Generating dependency graph for directory Filters Generating dependency graph for directory FiniteDifferenceGradientDescent Generating dependency graph for directory FixedGenericPyramid Generating dependency graph for directory FixedImagePyramids Generating dependency graph for directory FixedRecursivePyramid Generating dependency graph for directory FixedShrinkingPyramid Generating dependency graph for directory FixedSmoothingPyramid Generating dependency graph for directory Full Generating dependency graph for directory FullSearch Generating dependency graph for directory GradientDifference Generating dependency graph for directory Grid Generating dependency graph for directory ImageSamplers Generating dependency graph for directory Install Generating dependency graph for directory Interpolators Generating dependency graph for directory Kernel Generating dependency graph for directory KNN Generating dependency graph for directory KNNGraphAlphaMutualInformation Generating dependency graph for directory LinearInterpolator Generating dependency graph for directory LinearResampleInterpolator Generating dependency graph for directory/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/PolydataDummyPenalty/elxPolydataDummyPenalty.h:37: warning: Unsupported xml/html tag found Main Generating dependency graph for directory Metrics Generating dependency graph for directory MissingStructurePenalty Generating dependency graph for directory MovingGenericPyramid Generating dependency graph for directory MovingImagePyramids Generating dependency graph for directory MovingRecursivePyramid Generating dependency graph for directory MovingShrinkingPyramid Generating dependency graph for directory MovingSmoothingPyramid Generating dependency graph for directory MultiBSplineTransformWithNormal Generating dependency graph for directory MultiMetricMultiResolutionRegistration Generating dependency graph for directory MultInputRandomCoordinate Generating dependency graph for directory MultiResolutionRegistration Generating dependency graph for directory MultiResolutionRegistrationWithFeatures Generating dependency graph for directory MutualInformationHistogram Generating dependency graph for directory MyStandardResampler Generating dependency graph for directory NearestNeighborInterpolator Generating dependency graph for directory NearestNeighborResampleInterpolator Generating dependency graph for directory NormalizedGradientCorrelation Generating dependency graph for directory NormalizedMutualInformation Generating dependency graph for directory OpenCL Generating dependency graph for directory OpenCLFixedGenericPyramid Generating dependency graph for directory OpenCLMovingGenericPyramid Generating dependency graph for directory OpenCLResampler Generating dependency graph for directory Optimizers Generating dependency graph for directory PatternIntensity Generating dependency graph for directory PCAMetric Generating dependency graph for directory PCAMetric2 Generating dependency graph for directory PolydataDummyPenalty Generating dependency graph for directory Powell Generating dependency graph for directory PreconditionedGradientDescent Generating dependency graph for directory PreconditionedStochasticGradientDescent Generating dependency graph for directory QuasiNewtonLBFGS Generating dependency graph for directory Random Generating dependency graph for directory RandomCoordinate Generating dependency graph for directory RandomSparseMask Generating dependency graph for directory RayCastInterpolator Generating dependency graph for directory RayCastResampleInterpolator Generating dependency graph for directory RDBSplineResampleInterpolator Generating dependency graph for directory RecursiveBSplineTransform Generating dependency graph for directory ReducedDimensionBSplineInterpolator Generating dependency graph for directory Registrations Generating dependency graph for directory RegularStepGradientDescent Generating dependency graph for directory ResampleInterpolators Generating dependency graph for directory Resamplers Generating dependency graph for directory RigidityPenalty Generating dependency graph for directory RSGDEachParameterApart Generating dependency graph for directory SimilarityTransform Generating dependency graph for directory Simplex Generating dependency graph for directory SimultaneousPerturbation Generating dependency graph for directory SplineKernelTransform Generating dependency graph for directory StandardGradientDescent Generating dependency graph for directory StandardStochasticGradientDescent Generating dependency graph for directory StatisticalShapePenalty Generating dependency graph for directory SumOfPairwiseCorrelationsMetric Generating dependency graph for directory SumSquaredTissueVolumeDifferenceMetric Generating dependency graph for directory Transforms Generating dependency graph for directory Transforms Generating dependency graph for directory TranslationStackTransform Generating dependency graph for directory TranslationTransform Generating dependency graph for directory VarianceOverLastDimension Generating dependency graph for directory ViolaWellsMutualInformation Generating dependency graph for directory WeightedCombinationTransform Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member ind/build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/PolydataDummyPenalty/elxPolydataDummyPenalty.h:37: warning: Unsupported xml/html tag found /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/PolydataDummyPenalty/elxPolydataDummyPenalty.h:37: warning: Unsupported xml/html tag found /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/PolydataDummyPenalty/elxPolydataDummyPenalty.h:37: warning: Unsupported xml/html tag found /build/elastix-TRdtE2/elastix-5.0.1/Components/Metrics/PolydataDummyPenalty/elxPolydataDummyPenalty.h:37: warning: Unsupported xml/html tag found ex... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating graphical class hierarchy... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... Running dot... Generating dot graphs using 13 parallel threads... 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1953/1959 Patching output file 1954/1959 Patching output file 1955/1959 Patching output file 1956/1959 Patching output file 1957/1959 Patching output file 1958/1959 Patching output file 1959/1959 lookup cache used 52085/65536 hits=466602 misses=54737 finished... + find help -name *.md5 -delete sed -ie 's/^%\\date{/\\date{'"06.12.2021"'/' dox/manual/manual.tex sed -ie 's/\\today/'"06.12.2021"'/' dox/manual/manual.tex cd dox/manual && latex manual && bibtex manual && latex manual && latex manual && latex manual && dvipdf manual This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=latex) restricted \write18 enabled. entering extended mode (./manual.tex LaTeX2e <2021-11-15> L3 programming layer <2021-11-22> (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2021/10/04 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) 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[1] LaTeX Warning: Reference `chp:Tutorial' on page 2 undefined on input line 140. [2] Chapter 2. LaTeX Warning: Reference `chp:advanced' on page 3 undefined on input line 169. LaTeX Warning: Reference `fig:concept' on page 3 undefined on input line 182. Package natbib Warning: Citation `MaintzEA98' on page 3 undefined on input line 185. Package natbib Warning: Citation `LesterEA99' on page 3 undefined on input line 185. Package natbib Warning: Citation `HillEA01' on page 3 undefined on input line 1 85. Package natbib Warning: Citation `Hajnal01' on page 3 undefined on input line 1 85. Package natbib Warning: Citation `Zit03:Image' on page 3 undefined on input lin e 185. Package natbib Warning: Citation `Modersitzki04:Numerical' on page 3 undefined on input line 185. Package natbib Warning: Citation `Sotiras2013' on page 3 undefined on input lin e 185. LaTeX Warning: Reference `sec:comp:metric' on page 3 undefined on input line 19 0. 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[13] LaTeX Warning: Reference `sec:transformtuning' on page 14 undefined on input li ne 949. Package natbib Warning: Citation `Cru06:Generalized' on page 14 undefined on in put line 985. Package natbib Warning: Citation `Roh04:Evaluation' on page 14 undefined on inp ut line 987. [14] Package natbib Warning: Citation `Murphy08' on page 15 undefined on input line 997. Package natbib Warning: Citation `Rohlfing2012' on page 15 undefined on input l ine 1017. LaTeX Warning: Reference `table:visualization' on page 15 undefined on input li ne 1032. LaTeX Warning: Reference `chp:vvtutorial' on page 15 undefined on input line 10 63. Underfull \hbox (badness 10000) in alignment at lines 1041--1065 [][][][] LaTeX Warning: `!h' float specifier changed to `!ht'. [15] [16] Chapter 3. [17] Package natbib Warning: Citation `KleinEA07' on page 18 undefined on input line 1141. Package natbib Warning: Citation `Shamonin2014' on page 18 undefined on input l ine 1142. (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [18] LaTeX Warning: Reference `ssec:dev:library' on page 19 undefined on input line 1278. [19] Overfull \hbox (31.7411pt too wide) in paragraph at lines 1290--1291 []\OT1/cmtt/m/n/10 elastix -f fixedImage.ext -m movingImage.ext -out outputDire ctory -p parameterFile.txt LaTeX Warning: Reference `sec:elastix:param' on page 20 undefined on input line 1299. Overfull \hbox (10.74129pt too wide) in paragraph at lines 1329--1334 \OT1/cmtt/m/n/10 elastix -f ... -m ... -out out2 -p param2.txt -t0 out1/Transfo rmParameters.0.txt Overfull \hbox (10.74129pt too wide) in paragraph at lines 1329--1334 \OT1/cmtt/m/n/10 elastix -f ... -m ... -out out3 -p param3.txt -t0 out2/Transfo rmParameters.0.txt LaTeX Warning: Reference `eq:addition' on page 20 undefined on input line 1341. LaTeX Warning: Reference `eq:composition' on page 20 undefined on input line 13 42. [20] LaTeX Warning: Reference `chp:ExampleParam' on page 21 undefined on input line 1366. LaTeX Warning: Reference `chp:Tutorial' on page 21 undefined on input line 1376 . [21] Chapter 4. LaTeX Warning: Reference `sec:elastix:call' on page 22 undefined on input line 1413. LaTeX Warning: Reference `sec:transformix:tp' on page 22 undefined on input lin e 1414. LaTeX Warning: Reference `sec:comp:transform' on page 22 undefined on input lin e 1422. Overfull \hbox (5.49133pt too wide) in paragraph at lines 1426--1427 []\OT1/cmtt/m/n/10 transformix -def inputPoints.txt -out outputDirectory -tp Tr ansformParameters.txt [22] Overfull \hbox (5.49133pt too wide) in paragraph at lines 1456--1457 []\OT1/cmtt/m/n/10 transformix -def inputPoints.vtk -out outputDirectory -tp Tr ansformParameters.txt LaTeX Warning: Reference `chp:ExampleTransformParam' on page 23 undefined on in put line 1502. LaTeX Warning: Reference `sec:interpolatortuning' on page 23 undefined on input line 1517. [23] LaTeX Warning: Reference `ssec:tut:memory' on page 24 undefined on input line 1 557. [24] Chapter 5. LaTeX Warning: Reference `chp:Registration' on page 25 undefined on input line 1571. LaTeX Warning: Reference `table:tutorial:components' on page 25 undefined on in put line 1579. LaTeX Warning: Reference `chp:Registration' on page 25 undefined on input line 1582. LaTeX Warning: Reference `fig:registrationcomponents' on page 25 undefined on i nput line 1585. LaTeX Warning: Reference `chp:Registration' on page 25 undefined on input line 1587. Overfull \hbox (12.74835pt too wide) in paragraph at lines 1600--1601 []|\OT1/cmtt/m/n/10 AdvancedMattesMutualInformation| Overfull \hbox (23.24826pt too wide) in paragraph at lines 1606--1607 []|\OT1/cmtt/m/n/10 AdaptiveStochasticGradientDescent| [25] LaTeX Warning: Reference `sec:comp:metric' on page 26 undefined on input line 1 635. LaTeX Warning: Reference `table:tutorial:components' on page 26 undefined on in put line 1637. 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[32] LaTeX Warning: Reference `fig:ak' on page 33 undefined on input line 2141. LaTeX Warning: Reference `sec:transformtuning' on page 33 undefined on input li ne 2146. [33] [34] Chapter 6. Overfull \hbox (8.74144pt too wide) in paragraph at lines 2262--2263 []\OT1/cmtt/m/n/10 elastix -f0 fixed0.ext -f1 fixed1.ext -f<>... -m0 moving0.ex t -m1 moving1.ext [35] Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 2303. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\alpha' on input line 2303. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 2303. Package natbib Warning: Citation `Staring09' on page 36 undefined on input line 2308. 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(rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information) Output written on manual.dvi (61 pages, 332432 bytes). Transcript written on manual.log. This is BibTeX, Version 0.99d (TeX Live 2022/dev/Debian) The top-level auxiliary file: manual.aux The style file: plainnat.bst Database file #1: IEEEabrv.bib Database file #2: manual.bib This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=latex) restricted \write18 enabled. entering extended mode (./manual.tex LaTeX2e <2021-11-15> L3 programming layer <2021-11-22> (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2021/10/04 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. 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[14] Package natbib Warning: Citation `Murphy08' on page 15 undefined on input line 997. Package natbib Warning: Citation `Rohlfing2012' on page 15 undefined on input l ine 1017. Underfull \hbox (badness 10000) in alignment at lines 1041--1065 [][][][] LaTeX Warning: `!h' float specifier changed to `!ht'. [15] [16] Chapter 3. [17] Package natbib Warning: Citation `KleinEA07' on page 18 undefined on input line 1141. Package natbib Warning: Citation `Shamonin2014' on page 18 undefined on input l ine 1142. 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Package natbib Warning: Citation `Qiao:2016' on page 30 undefined on input line 1962. Package natbib Warning: Citation `Klein09' on page 30 undefined on input line 1 972. Package natbib Warning: Citation `Qiao:2016' on page 30 undefined on input line 1972. Package natbib Warning: Citation `Qiao:2016' on page 30 undefined on input line 1979. [30] Overfull \hbox (36.4944pt too wide) in paragraph at lines 2011--2015 []\OT1/cmr/m/n/10 The pyra-mid sched-ule de-fines the amount of blur-ring (and down-sampling in case a \OT1/cmtt/m/n/10 FixedRecursiveImagePyramid [31] [32] [33] [34] Chapter 6. Overfull \hbox (8.74144pt too wide) in paragraph at lines 2262--2263 []\OT1/cmtt/m/n/10 elastix -f0 fixed0.ext -f1 fixed1.ext -f<>... -m0 moving0.ex t -m1 moving1.ext [35] Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 2303. 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Package natbib Warning: Citation `StaringKlein2010b' on page 41 undefined on in put line 2642. Package natbib Warning: Citation `ThevenazEA00a' on page 41 undefined on input line 2651. Package natbib Warning: Citation `StaringKlein2010a' on page 41 undefined on in put line 2661. [41] [42] [43] [44] Overfull \hbox (1.49112pt too wide) in paragraph at lines 2992--2992 [] \OT1/cmtt/m/n/10 static_cast(input_im age_adapter.GetPointer()),[] [45] Overfull \hbox (36.18904pt too wide) in paragraph at lines 2994--2998 \OT1/cmr/m/n/10 Alternatively, you can read the trans-for-ma-tion pa-ram-e-ters from file (for ex-am-ple, from \OT1/cmtt/m/n/10 TransformParameters.0.txt\OT1/ cmr/m/n/10 ) [46] [47] [48] [49] Appendix A. [50] [51] Appendix B. [52] Appendix C. [53] [54] Appendix D. [55] [56] [57] [58] [59] (./manual.bbl [60] [61]) Package natbib Warning: There were undefined citations. [62] (./manual.aux Package natbib Warning: Citation(s) may have changed. 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This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=latex) restricted \write18 enabled. entering extended mode (./manual.tex LaTeX2e <2021-11-15> L3 programming layer <2021-11-22> (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2021/10/04 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. 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[1] [2] Chapter 2. [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] Overfull \hbox (8.0852pt too wide) in paragraph at lines 883--886 []\OT1/cmr/m/n/10 (\OT1/cmtt/m/n/10 FixedRecursiveImagePyramid \OT1/cmr/m/n/10 and \OT1/cmtt/m/n/10 MovingRecursiveImagePyramid\OT1/cmr/m/n/10 ) Ap-plies smoo th- Overfull \hbox (20.88647pt too wide) in paragraph at lines 887--890 []\OT1/cmr/m/n/10 (\OT1/cmtt/m/n/10 FixedSmoothingImagePyramid \OT1/cmr/m/n/10 and \OT1/cmtt/m/n/10 MovingSmoothingImagePyramid\OT1/cmr/m/n/10 ) Ap-plies smoo th- Overfull \hbox (24.90533pt too wide) in paragraph at lines 891--894 []\OT1/cmr/m/n/10 (\OT1/cmtt/m/n/10 FixedShrinkingImagePyramid \OT1/cmr/m/n/10 and \OT1/cmtt/m/n/10 MovingShrinkingImagePyramid\OT1/cmr/m/n/10 ) Ap-plies \OT1 /cmr/m/it/10 no \OT1/cmr/m/n/10 smooth- [13] [14] Underfull \hbox (badness 10000) in alignment at lines 1041--1065 [][][][] LaTeX Warning: `!h' float specifier changed to `!ht'. [15] [16] Chapter 3. [17] (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [18] [19] Overfull \hbox (31.7411pt too wide) in paragraph at lines 1290--1291 []\OT1/cmtt/m/n/10 elastix -f fixedImage.ext -m movingImage.ext -out outputDire ctory -p parameterFile.txt Overfull \hbox (10.74129pt too wide) in paragraph at lines 1329--1334 \OT1/cmtt/m/n/10 elastix -f ... -m ... -out out2 -p param2.txt -t0 out1/Transfo rmParameters.0.txt Overfull \hbox (10.74129pt too wide) in paragraph at lines 1329--1334 \OT1/cmtt/m/n/10 elastix -f ... -m ... -out out3 -p param3.txt -t0 out2/Transfo rmParameters.0.txt [20] [21] Chapter 4. Overfull \hbox (5.49133pt too wide) in paragraph at lines 1426--1427 []\OT1/cmtt/m/n/10 transformix -def inputPoints.txt -out outputDirectory -tp Tr ansformParameters.txt [22] Overfull \hbox (5.49133pt too wide) in paragraph at lines 1456--1457 []\OT1/cmtt/m/n/10 transformix -def inputPoints.vtk -out outputDirectory -tp Tr ansformParameters.txt [23] [24] Chapter 5. Overfull \hbox (12.74835pt too wide) in paragraph at lines 1600--1601 []|\OT1/cmtt/m/n/10 AdvancedMattesMutualInformation| Overfull \hbox (23.24826pt too wide) in paragraph at lines 1606--1607 []|\OT1/cmtt/m/n/10 AdaptiveStochasticGradientDescent| [25] Overfull \hbox (1.23471pt too wide) in paragraph at lines 1663--1674 \OT1/cmtt/m/n/10 AdaptiveStochasticGradientDescent \OT1/cmr/m/n/10 op-ti-mis-er s, which are the rec-om-mended op-ti-mi-sa-tion rou-tines. These Underfull \hbox (badness 10000) in paragraph at lines 1693--1698 [26] [27] [28] [29] [30] Overfull \hbox (36.4944pt too wide) in paragraph at lines 2011--2015 []\OT1/cmr/m/n/10 The pyra-mid sched-ule de-fines the amount of blur-ring (and down-sampling in case a \OT1/cmtt/m/n/10 FixedRecursiveImagePyramid [31] [32] [33] [34] Chapter 6. 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Underfull \hbox (badness 2941) in paragraph at lines 2329--2332 \OT1/cmr/m/n/10 A com-plete list of the avail-able pa-ram-e-ters can be found i n the doxy-gen doc-u-men-ta-tion $\OMS/cmsy/m/n/10 !$ [36] [37] Underfull \hbox (badness 2941) in paragraph at lines 2436--2440 \OT1/cmr/m/n/10 A com-plete list of the avail-able pa-ram-e-ters can be found i n the doxy-gen doc-u-men-ta-tion $\OMS/cmsy/m/n/10 !$ [38] Overfull \hbox (36.43239pt too wide) in paragraph at lines 2551--2561 []\OT1/cmr/m/n/10 As an al-ter-na-tive to the B-spline trans-form, \OT1/cmtt/m/ n/10 elastix \OT1/cmr/m/n/10 in-cludes a \OT1/cmtt/m/n/10 SplineKernelTransform \OT1/cmr/m/n/10 , [39] [40] Chapter 7. LaTeX Warning: `!h' float specifier changed to `!ht'. [41] [42] [43] [44] Overfull \hbox (1.49112pt too wide) in paragraph at lines 2992--2992 [] \OT1/cmtt/m/n/10 static_cast(input_im age_adapter.GetPointer()),[] [45] Overfull \hbox (36.18904pt too wide) in paragraph at lines 2994--2998 \OT1/cmr/m/n/10 Alternatively, you can read the trans-for-ma-tion pa-ram-e-ters from file (for ex-am-ple, from \OT1/cmtt/m/n/10 TransformParameters.0.txt\OT1/ cmr/m/n/10 ) [46] [47] [48] [49] Appendix A. [50] [51] Appendix B. [52] Appendix C. [53] [54] Appendix D. [55] [56] [57] [58] [59] (./manual.bbl [60] [61]) [62] (./manual.aux) LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information) Output written on manual.dvi (66 pages, 477684 bytes). Transcript written on manual.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=latex) restricted \write18 enabled. entering extended mode (./manual.tex LaTeX2e <2021-11-15> L3 programming layer <2021-11-22> (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2021/10/04 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. 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(hyperref) But driver `hdvips.def' does not suppport this. (hyperref) Expect trouble with the link areas of broken links. 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[1] [2] Chapter 2. [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] Overfull \hbox (8.0852pt too wide) in paragraph at lines 883--886 []\OT1/cmr/m/n/10 (\OT1/cmtt/m/n/10 FixedRecursiveImagePyramid \OT1/cmr/m/n/10 and \OT1/cmtt/m/n/10 MovingRecursiveImagePyramid\OT1/cmr/m/n/10 ) Ap-plies smoo th- Overfull \hbox (20.88647pt too wide) in paragraph at lines 887--890 []\OT1/cmr/m/n/10 (\OT1/cmtt/m/n/10 FixedSmoothingImagePyramid \OT1/cmr/m/n/10 and \OT1/cmtt/m/n/10 MovingSmoothingImagePyramid\OT1/cmr/m/n/10 ) Ap-plies smoo th- Overfull \hbox (24.90533pt too wide) in paragraph at lines 891--894 []\OT1/cmr/m/n/10 (\OT1/cmtt/m/n/10 FixedShrinkingImagePyramid \OT1/cmr/m/n/10 and \OT1/cmtt/m/n/10 MovingShrinkingImagePyramid\OT1/cmr/m/n/10 ) Ap-plies \OT1 /cmr/m/it/10 no \OT1/cmr/m/n/10 smooth- [13] [14] Underfull \hbox (badness 10000) in alignment at lines 1041--1065 [][][][] LaTeX Warning: `!h' float specifier changed to `!ht'. [15] [16] Chapter 3. [17] (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [18] [19] Overfull \hbox (31.7411pt too wide) in paragraph at lines 1290--1291 []\OT1/cmtt/m/n/10 elastix -f fixedImage.ext -m movingImage.ext -out outputDire ctory -p parameterFile.txt Overfull \hbox (10.74129pt too wide) in paragraph at lines 1329--1334 \OT1/cmtt/m/n/10 elastix -f ... -m ... -out out2 -p param2.txt -t0 out1/Transfo rmParameters.0.txt Overfull \hbox (10.74129pt too wide) in paragraph at lines 1329--1334 \OT1/cmtt/m/n/10 elastix -f ... -m ... -out out3 -p param3.txt -t0 out2/Transfo rmParameters.0.txt [20] [21] Chapter 4. Overfull \hbox (5.49133pt too wide) in paragraph at lines 1426--1427 []\OT1/cmtt/m/n/10 transformix -def inputPoints.txt -out outputDirectory -tp Tr ansformParameters.txt [22] Overfull \hbox (5.49133pt too wide) in paragraph at lines 1456--1457 []\OT1/cmtt/m/n/10 transformix -def inputPoints.vtk -out outputDirectory -tp Tr ansformParameters.txt [23] [24] Chapter 5. 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Underfull \hbox (badness 2941) in paragraph at lines 2329--2332 \OT1/cmr/m/n/10 A com-plete list of the avail-able pa-ram-e-ters can be found i n the doxy-gen doc-u-men-ta-tion $\OMS/cmsy/m/n/10 !$ [36] [37] Underfull \hbox (badness 2941) in paragraph at lines 2436--2440 \OT1/cmr/m/n/10 A com-plete list of the avail-able pa-ram-e-ters can be found i n the doxy-gen doc-u-men-ta-tion $\OMS/cmsy/m/n/10 !$ [38] Overfull \hbox (36.43239pt too wide) in paragraph at lines 2551--2561 []\OT1/cmr/m/n/10 As an al-ter-na-tive to the B-spline trans-form, \OT1/cmtt/m/ n/10 elastix \OT1/cmr/m/n/10 in-cludes a \OT1/cmtt/m/n/10 SplineKernelTransform \OT1/cmr/m/n/10 , [39] [40] Chapter 7. LaTeX Warning: `!h' float specifier changed to `!ht'. [41] [42] [43] [44] Overfull \hbox (1.49112pt too wide) in paragraph at lines 2992--2992 [] \OT1/cmtt/m/n/10 static_cast(input_im age_adapter.GetPointer()),[] [45] Overfull \hbox (36.18904pt too wide) in paragraph at lines 2994--2998 \OT1/cmr/m/n/10 Alternatively, you can read the trans-for-ma-tion pa-ram-e-ters from file (for ex-am-ple, from \OT1/cmtt/m/n/10 TransformParameters.0.txt\OT1/ cmr/m/n/10 ) [46] [47] [48] [49] Appendix A. [50] [51] Appendix B. [52] Appendix C. [53] [54] Appendix D. [55] [56] [57] [58] [59] (./manual.bbl [60] [61]) [62] (./manual.aux) ) (see the transcript file for additional information) Output written on manual.dvi (66 pages, 477684 bytes). Transcript written on manual.log. dvips: Font Helvetica used in file images//ak.eps is not in the mapping file. dh_installdocs -i # avoid privacy breach by using local logo sed -i 's#http://elastix.isi.uu.nl/images/##' debian/elastix-doc/usr/share/doc/elastix/help/html/*.html sed -i 's#http://elastix.isi.uu.nl/images/#html/#' debian/elastix-doc/usr/share/doc/elastix/help/*.html cp -a dox/art/elastix_logo_full.gif debian/elastix-doc/usr/share/doc/elastix/help/html/elastixLogo.gif make[1]: Leaving directory '/build/elastix-TRdtE2/elastix-5.0.1' dh_installchangelogs -i dh_installman -i dh_perl -i dh_link -i dh_strip_nondeterminism -i dh_compress -i dh_fixperms -i dh_missing -i dh_installdeb -i dh_gencontrol -i dh_md5sums -i dh_builddeb -i dpkg-deb: building package 'elastix-doc' in '../elastix-doc_5.0.1-1_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../elastix_5.0.1-1_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/elastix-TRdtE2 /tmp/elastix-5.0.1-1rsf1bceb I: cleaning package lists and apt cache... W: deleting files in /tmp: texfonts I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.8Mb9Cey6VM... I: success in 14015.1421 seconds md5: elastix-doc_5.0.1-1_all.deb: OK sha1: elastix-doc_5.0.1-1_all.deb: OK sha256: elastix-doc_5.0.1-1_all.deb: OK Checksums: OK