Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/d/dolfinx/dolfinx_2019.2.0~git20210130.c14cb0a-5_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/dolfinx-2019.2.0~git20210130.c14cb0a-5pslvopp1/dolfinx_2019.2.0~git20210130.c14cb0a-5_amd64.buildinfo Get source package info: dolfinx=2019.2.0~git20210130.c14cb0a-5 Source URL: http://snapshot.notset.fr/mr/package/dolfinx/2019.2.0~git20210130.c14cb0a-5/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.118 autoconf=2.69-14 automake=1:1.16.3-2 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=11.1 base-passwd=3.5.50 bash=5.1-3 binutils=2.35.2-2 binutils-common=2.35.2-2 binutils-x86-64-linux-gnu=2.35.2-2 bsdextrautils=2.36.1-7 bsdutils=1:2.36.1-7 build-essential=12.9 bzip2=1.0.8-4 ca-certificates=20210119 chrpath=0.16-2+b1 cmake=3.18.4-2 cmake-data=3.18.4-2 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.2.1-6 dash=0.5.11+git20210120+802ebd4-1 debconf=1.5.76 debhelper=13.3.4 debianutils=4.11.2 dh-autoreconf=20 dh-python=4.20201102+nmu1 dh-strip-nondeterminism=1.12.0-1 diffutils=1:3.7-5 docutils-common=0.16+dfsg-4 dpkg=1.20.9 dpkg-dev=1.20.9 dwz=0.14-1 file=1:5.39-3 findutils=4.8.0-1 fonts-mathjax=2.7.9+dfsg-1 g++=4:10.2.1-1 g++-10=10.2.1-6 gcc=4:10.2.1-1 gcc-10=10.2.1-6 gcc-10-base=10.2.1-6 gettext=0.21-4 gettext-base=0.21-4 gfortran=4:10.2.1-1 gfortran-10=10.2.1-6 grep=3.6-1 groff-base=1.22.4-6 gzip=1.10-4 hostname=3.23 ibverbs-providers=33.2-1 icu-devtools=67.1-6 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-10 libaec-dev=1.0.4-2 libaec0=1.0.4-2 libamd2=1:5.8.1+dfsg-2 libarchive-zip-perl=1.68-1 libarchive13=3.4.3-2+b1 libarpack2=3.8.0-1 libarpack2-dev=3.8.0-1 libasan6=10.2.1-6 libatomic1=10.2.1-6 libattr1=1:2.4.48-6 libaudit-common=1:3.0-2 libaudit1=1:3.0-2 libbasix-dev=0.0.1~git20210122.4f10ef2-2 libbasix0=0.0.1~git20210122.4f10ef2-2 libbinutils=2.35.2-2 libblas-dev=3.9.0-3 libblas3=3.9.0-3 libblkid1=2.36.1-7 libboost-atomic1.74-dev=1.74.0-9 libboost-atomic1.74.0=1.74.0-9 libboost-chrono-dev=1.74.0.3 libboost-chrono1.74-dev=1.74.0-9 libboost-chrono1.74.0=1.74.0-9 libboost-date-time1.74-dev=1.74.0-9 libboost-date-time1.74.0=1.74.0-9 libboost-dev=1.74.0.3 libboost-filesystem-dev=1.74.0.3 libboost-filesystem1.74-dev=1.74.0-9 libboost-filesystem1.74.0=1.74.0-9 libboost-iostreams-dev=1.74.0.3 libboost-iostreams1.74-dev=1.74.0-9 libboost-iostreams1.74.0=1.74.0-9 libboost-math-dev=1.74.0.3 libboost-math1.74-dev=1.74.0-9 libboost-math1.74.0=1.74.0-9 libboost-mpi-dev=1.74.0.3 libboost-mpi1.74-dev=1.74.0-9 libboost-mpi1.74.0=1.74.0-9 libboost-program-options-dev=1.74.0.3 libboost-program-options1.74-dev=1.74.0-9 libboost-program-options1.74.0=1.74.0-9 libboost-regex1.74-dev=1.74.0-9 libboost-regex1.74.0=1.74.0-9 libboost-serialization-dev=1.74.0.3 libboost-serialization1.74-dev=1.74.0-9 libboost-serialization1.74.0=1.74.0-9 libboost-system1.74-dev=1.74.0-9 libboost-system1.74.0=1.74.0-9 libboost-thread-dev=1.74.0.3 libboost-thread1.74-dev=1.74.0-9 libboost-thread1.74.0=1.74.0-9 libboost-timer-dev=1.74.0.3 libboost-timer1.74-dev=1.74.0-9 libboost-timer1.74.0=1.74.0-9 libboost1.74-dev=1.74.0-9 libbrotli1=1.0.9-2+b2 libbsd0=0.11.3-1 libbtf1=1:5.8.1+dfsg-2 libbz2-1.0=1.0.8-4 libc-bin=2.31-12 libc-dev-bin=2.31-12 libc6=2.31-12 libc6-dev=2.31-12 libcamd2=1:5.8.1+dfsg-2 libcap-ng0=0.7.9-2.2+b1 libcbor0=0.5.0+dfsg-2 libcc1-0=10.2.1-6 libccolamd2=1:5.8.1+dfsg-2 libcholmod3=1:5.8.1+dfsg-2 libcolamd2=1:5.8.1+dfsg-2 libcom-err2=1.46.2-1 libcombblas1.16.0=1.6.2-6 libcrypt-dev=1:4.4.18-4 libcrypt1=1:4.4.18-4 libctf-nobfd0=2.35.2-2 libctf0=2.35.2-2 libcurl4=7.74.0-1.2 libcxsparse3=1:5.8.1+dfsg-2 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.259 libdebhelper-perl=13.3.4 libdpkg-perl=1.20.9 libedit2=3.1-20191231-2+b1 libeigen3-dev=3.3.9-2 libelf1=0.183-3 libevent-2.1-7=2.1.12-stable-1 libevent-core-2.1-7=2.1.12-stable-1 libevent-dev=2.1.12-stable-1 libevent-extra-2.1-7=2.1.12-stable-1 libevent-openssl-2.1-7=2.1.12-stable-1 libevent-pthreads-2.1-7=2.1.12-stable-1 libexpat1=2.2.10-2 libexpat1-dev=2.2.10-2 libfabric1=1.11.0-2 libffi7=3.3-6 libfftw3-bin=3.3.8-2 libfftw3-dev=3.3.8-2 libfftw3-double3=3.3.8-2 libfftw3-long3=3.3.8-2 libfftw3-mpi-dev=3.3.8-2 libfftw3-mpi3=3.3.8-2 libfftw3-quad3=3.3.8-2 libfftw3-single3=3.3.8-2 libfido2-1=1.6.0-2 libfile-stripnondeterminism-perl=1.12.0-1 libgcc-10-dev=10.2.1-6 libgcc-s1=10.2.1-6 libgcrypt20=1.8.7-6 libgdbm-compat4=1.19-2 libgdbm6=1.19-2 libgfortran-10-dev=10.2.1-6 libgfortran5=10.2.1-6 libglib2.0-0=2.66.8-1 libgmp10=2:6.2.1+dfsg-1 libgnutls30=3.7.1-5 libgomp1=10.2.1-6 libgpg-error0=1.38-2 libgraphblas3=1:5.8.1+dfsg-2 libgssapi-krb5-2=1.18.3-5 libhdf5-mpi-dev=1.10.6+repack-2 libhdf5-openmpi-103-1=1.10.6+repack-2 libhdf5-openmpi-cpp-103-1=1.10.6+repack-2 libhdf5-openmpi-dev=1.10.6+repack-2 libhdf5-openmpi-fortran-102=1.10.6+repack-2 libhdf5-openmpi-hl-100=1.10.6+repack-2 libhdf5-openmpi-hl-cpp-100=1.10.6+repack-2 libhdf5-openmpi-hl-fortran-100=1.10.6+repack-2 libhogweed6=3.7.2-3 libhwloc-dev=2.4.1+dfsg-1 libhwloc-plugins=2.4.1+dfsg-1 libhwloc15=2.4.1+dfsg-1 libhypre=2.18.2-1 libhypre-dev=2.18.2-1 libibverbs-dev=33.2-1 libibverbs1=33.2-1 libicu-dev=67.1-6 libicu67=67.1-6 libidn2-0=2.3.0-5 libisl23=0.23-1 libitm1=10.2.1-6 libjpeg-dev=1:2.0.6-4 libjpeg62-turbo=1:2.0.6-4 libjpeg62-turbo-dev=1:2.0.6-4 libjs-jquery=3.5.1+dfsg+~3.5.5-7 libjs-jquery-ui=1.12.1+dfsg-8 libjs-mathjax=2.7.9+dfsg-1 libjs-sphinxdoc=3.4.3-2 libjs-underscore=1.9.1~dfsg-3 libjsoncpp24=1.9.4-4 libk5crypto3=1.18.3-5 libkeyutils1=1.6.1-2 libklu1=1:5.8.1+dfsg-2 libkrb5-3=1.18.3-5 libkrb5support0=1.18.3-5 liblapack-dev=3.9.0-3 liblapack3=3.9.0-3 libldap-2.4-2=2.4.57+dfsg-3 libldl2=1:5.8.1+dfsg-2 liblsan0=10.2.1-6 libltdl-dev=2.4.6-15 libltdl7=2.4.6-15 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmd0=1.0.3-3 libmetis5=5.1.0.dfsg-7 libmongoose2=1:5.8.1+dfsg-2 libmount1=2.36.1-7 libmpc3=1.2.0-1 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libmumps-5.3=5.3.5-2 libmumps-dev=5.3.5-2 libmumps-headers-dev=5.3.5-2 libncurses6=6.2+20201114-2 libncursesw6=6.2+20201114-2 libnettle8=3.7.2-3 libnghttp2-14=1.43.0-1 libnl-3-200=3.4.0-1+b1 libnl-3-dev=3.4.0-1+b1 libnl-route-3-200=3.4.0-1+b1 libnl-route-3-dev=3.4.0-1+b1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnuma-dev=2.0.12-1+b1 libnuma1=2.0.12-1+b1 libopenmpi-dev=4.1.0-10 libopenmpi3=4.1.0-10 libp11-kit0=0.23.22-1 libpam-modules=1.4.0-7 libpam-modules-bin=1.4.0-7 libpam-runtime=1.4.0-7 libpam0g=1.4.0-7 libparpack2=3.8.0-1 libparpack2-dev=3.8.0-1 libpciaccess0=0.16-1 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.1-4 libpetsc-complex-dev=3.14.5+dfsg1-4 libpetsc-complex3.14=3.14.5+dfsg1-4 libpetsc-complex3.14-dev=3.14.5+dfsg1-4 libpetsc-real-dev=3.14.5+dfsg1-4 libpetsc-real3.14=3.14.5+dfsg1-4 libpetsc-real3.14-dev=3.14.5+dfsg1-4 libpetsc3.14-dev-common=3.14.5+dfsg1-4 libpipeline1=1.5.3-1 libpmix-dev=4.0.0-4 libpmix2=4.0.0-4 libprocps8=2:3.3.17-5 libpsl5=0.21.0-1.2 libpsm-infinipath1=3.3+20.604758e7-6.1 libpsm2-2=11.2.185-1 libptscotch-6.1=6.1.0-2 libptscotch-dev=6.1.0-2 libpython3-all-dev=3.9.2-3 libpython3-dev=3.9.2-3 libpython3-stdlib=3.9.2-3 libpython3.9=3.9.2-1 libpython3.9-dev=3.9.2-1 libpython3.9-minimal=3.9.2-1 libpython3.9-stdlib=3.9.2-1 libquadmath0=10.2.1-6 librbio2=1:5.8.1+dfsg-2 librdmacm1=33.2-1 libreadline8=8.1-2 librhash0=1.4.1-2 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg-2.1 libsasl2-modules-db=2.1.27+dfsg-2.1 libscalapack-mpi-dev=2.1.0-4 libscalapack-openmpi-dev=2.1.0-4 libscalapack-openmpi2.1=2.1.0-4 libscotch-6.1=6.1.0-2 libscotch-dev=6.1.0-2 libseccomp2=2.5.1-1 libselinux1=3.1-3 libsemanage-common=3.1-1 libsemanage1=3.1-1+b2 libsepol1=3.1-1 libsigsegv2=2.13-1 libslepc-complex-dev=3.14.2+dfsg1-1 libslepc-complex3.14=3.14.2+dfsg1-1 libslepc-complex3.14-dev=3.14.2+dfsg1-1 libslepc-real-dev=3.14.2+dfsg1-1 libslepc-real3.14=3.14.2+dfsg1-1 libslepc-real3.14-dev=3.14.2+dfsg1-1 libsliplu1=1:5.8.1+dfsg-2 libsmartcols1=2.36.1-7 libspqr2=1:5.8.1+dfsg-2 libsqlite3-0=3.34.1-3 libssh2-1=1.9.0-3 libssl-dev=1.1.1k-1 libssl1.1=1.1.1k-1 libstdc++-10-dev=10.2.1-6 libstdc++6=10.2.1-6 libsub-override-perl=0.09-2 libsuitesparse-dev=1:5.8.1+dfsg-2 libsuitesparseconfig5=1:5.8.1+dfsg-2 libsuperlu-dev=5.2.2+dfsg1-2 libsuperlu-dist-dev=6.2.0+dfsg1-3 libsuperlu-dist6=6.2.0+dfsg1-3 libsuperlu5=5.2.2+dfsg1-2 libsystemd0=247.3-5 libsz2=1.0.4-2 libtasn1-6=4.16.0-2 libtinfo6=6.2+20201114-2 libtirpc-common=1.3.1-1 libtirpc-dev=1.3.1-1 libtirpc3=1.3.1-1 libtool=2.4.6-15 libtsan0=10.2.1-6 libubsan1=10.2.1-6 libuchardet0=0.0.7-1 libucx0=1.10.1~rc1+really.1.10.0-1 libudev1=247.3-5 libumfpack5=1:5.8.1+dfsg-2 libunistring2=0.9.10-4 libuuid1=2.36.1-7 libuv1=1.40.0-1 libx11-6=2:1.7.1-1 libx11-data=2:1.7.1-1 libxau6=1:1.0.9-1 libxcb1=1.14-3 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.3-1.1 libxml2=2.9.10+dfsg-6.7 libxml2-dev=2.9.10+dfsg-6.7 libxnvctrl0=460.73.01-1 libzstd1=1.4.8+dfsg-2.1 linux-libc-dev=5.10.40-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-2 mawk=1.3.4.20200120-2 media-types=4.0.0 mpi-default-bin=1.13 mpi-default-dev=1.13 ncurses-base=6.2+20201114-2 ncurses-bin=6.2+20201114-2 ocl-icd-libopencl1=2.2.14-2 ocl-icd-opencl-dev=2.2.14-2 opencl-c-headers=3.0~2020.12.18-1 opencl-clhpp-headers=3.0~2.0.13-1 openmpi-bin=4.1.0-10 openmpi-common=4.1.0-10 openssh-client=1:8.4p1-5 openssl=1.1.1k-1 passwd=1:4.8.1-1 patch=2.7.6-7 perl=5.32.1-4 perl-base=5.32.1-4 perl-modules-5.32=5.32.1-4 pkg-config=0.29.2-1 po-debconf=1.0.21+nmu1 procps=2:3.3.17-5 pybind11-dev=2.6.2-1 python-babel-localedata=2.8.0+dfsg.1-7 python-petsc4py-doc=3.14.1-1 python3=3.9.2-3 python3-alabaster=0.7.8-1.1 python3-all=3.9.2-3 python3-all-dev=3.9.2-3 python3-babel=2.8.0+dfsg.1-7 python3-basix=0.0.1~git20210122.4f10ef2-2 python3-certifi=2020.6.20-1 python3-cffi=1.14.5-1 python3-cffi-backend=1.14.5-1 python3-chardet=4.0.0-1 python3-dev=3.9.2-3 python3-distutils=3.9.2-1 python3-docutils=0.16+dfsg-4 python3-ffcx=2019.2.0~git20210122.22ca4c0-2 python3-fiat=2019.2.0~git20210116.0439689-2 python3-idna=2.10-1 python3-imagesize=1.2.0-2 python3-jinja2=2.11.3-1 python3-lib2to3=3.9.2-1 python3-markupsafe=1.1.1-1+b3 python3-minimal=3.9.2-3 python3-mpi4py=3.0.3-8 python3-mpmath=1.2.1-1 python3-numpy=1:1.19.5-1 python3-packaging=20.9-2 python3-petsc4py=3.14.1-1 python3-petsc4py-complex=3.14.1-1 python3-petsc4py-complex3.14=3.14.1-1 python3-petsc4py-real=3.14.1-1 python3-petsc4py-real3.14=3.14.1-1 python3-pkg-resources=52.0.0-3 python3-ply=3.11-4 python3-pycparser=2.20-3 python3-pygments=2.7.1+dfsg-2.1 python3-pyparsing=2.4.7-1 python3-requests=2.25.1+dfsg-2 python3-roman=2.0.0-5 python3-setuptools=52.0.0-3 python3-six=1.16.0-1 python3-slepc4py=3.14.0-2 python3-slepc4py-complex=3.14.0-2 python3-slepc4py-complex3.14=3.14.0-2+b1 python3-slepc4py-real=3.14.0-2 python3-slepc4py-real3.14=3.14.0-2+b1 python3-snowballstemmer=2.1.0-1 python3-sphinx=3.4.3-2 python3-sympy=1.7.1-3 python3-tz=2021.1-1 python3-ufl=2019.2.0~git20210211.d60cd09-1 python3-urllib3=1.26.4-1 python3.9=3.9.2-1 python3.9-dev=3.9.2-1 python3.9-minimal=3.9.2-1 readline-common=8.1-2 sed=4.7-1 sensible-utils=0.0.14 sgml-base=1.30 sphinx-common=3.4.3-2 swig=4.0.2-1 swig4.0=4.0.2-1 sysvinit-utils=2.96-7 tar=1.34+dfsg-1 tzdata=2021a-1 util-linux=2.36.1-7 xml-core=0.18+nmu1 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210608T033054Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d dolfinx=2019.2.0~git20210130.c14cb0a-5 && mkdir -p /build/dolfinx-8EH3C0 && dpkg-source --no-check -x /*.dsc /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a && chown -R builduser:builduser /build/dolfinx-8EH3C0" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1623243599" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/dolfinx-8EH3C0 /tmp/dolfinx-2019.2.0~git20210130.c14cb0a-5pslvopp1 bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20210608T033054Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.2qjoLw21Cx as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.2qjoLw21Cx Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-7). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210608T033054Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210608T033054Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1114 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4667 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-12) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210608T033054Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.2qjoLw21Cx Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20210608T033054Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 20s (1139 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.2qjoLw21Cx I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d dolfinx=2019.2.0~git20210130.c14cb0a-5 && mkdir -p /build/dolfinx-8EH3C0 && dpkg-source --no-check -x /*.dsc /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a && chown -R builduser:builduser /build/dolfinx-8EH3C0"' exec /tmp/mmdebstrap.2qjoLw21Cx Reading package lists... NOTICE: 'dolfinx' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/fenics/dolfinx.git Please use: git clone https://salsa.debian.org/science-team/fenics/dolfinx.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1000 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main dolfinx 2019.2.0~git20210130.c14cb0a-5 (dsc) [3832 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main dolfinx 2019.2.0~git20210130.c14cb0a-5 (tar) [960 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main dolfinx 2019.2.0~git20210130.c14cb0a-5 (diff) [36.3 kB] Fetched 1000 kB in 1s (1238 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'dolfinx_2019.2.0~git20210130.c14cb0a-5.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting dolfinx in /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a dpkg-source: info: unpacking dolfinx_2019.2.0~git20210130.c14cb0a.orig.tar.gz dpkg-source: info: unpacking dolfinx_2019.2.0~git20210130.c14cb0a-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying cmake_libdir_PR1359.patch dpkg-source: info: applying extra_CXXFLAGS.patch dpkg-source: info: applying python_cmake_module_path.patch dpkg-source: info: applying lib_rename.patch dpkg-source: info: applying stokes-taylor-hood-NAN.patch dpkg-source: info: applying enable-importing-cffi_support-from-new-or-old-numba.patch dpkg-source: info: applying avoid_cppimport_tests.patch dpkg-source: info: applying python_unit_test_32bit.patch dpkg-source: info: applying FindPETSc_mpi_include_path.patch dpkg-source: info: applying find_basix.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1623243599" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.2qjoLw21Cx dpkg-buildpackage: info: source package dolfinx dpkg-buildpackage: info: source version 2019.2.0~git20210130.c14cb0a-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean py3versions: no X-Python3-Version in control file, using supported versions dh clean --buildsystem=cmake --with python3,sphinxdoc debian/rules override_dh_auto_clean make[1]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a' py3versions: no X-Python3-Version in control file, using supported versions dh_auto_clean --builddir=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real dh_auto_clean --builddir=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex rm -f cpp/dolfinx/common/version.h \ cpp/demo/hyperelasticity/CMakeLists.txt \ cpp/demo/poisson/CMakeLists.txt make[1]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a' dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules build-arch py3versions: no X-Python3-Version in control file, using supported versions dh build-arch --buildsystem=cmake --with python3,sphinxdoc dh_update_autotools_config -a -O--buildsystem=cmake dh_autoreconf -a -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a' py3versions: no X-Python3-Version in control file, using supported versions PETSC_DIR=/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real dh_auto_configure --builddir=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real -- -D CMAKE_BUILD_TYPE:STRING=RelWithDebInfo -D BUILD_SHARED_LIBS:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D DOLFINX_ENABLE_TRILINOS:BOOL=OFF -D DOLFINX_ENABLE_HDF5:BOOL=ON -D HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc -D DOLFINX_ENABLE_PARMETIS:BOOL=OFF -D DOLFINX_ENABLE_SCOTCH:BOOL=ON -D DOLFINX_ENABLE_DOCS:BOOL=OFF -D DOLFINX_ENABLE_MPI:BOOL=ON -D MPIEXEC_PARAMS:STRING="--oversubscribe" -D CMAKE_CXX_FLAGS:STRING="-fpermissive" -D DOLFINX_EXTRA_CXX_FLAGS:STRING="-g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security" /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp cd obj-x86_64-linux-gnu-real && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -D CMAKE_BUILD_TYPE:STRING=RelWithDebInfo -D BUILD_SHARED_LIBS:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D DOLFINX_ENABLE_TRILINOS:BOOL=OFF -D DOLFINX_ENABLE_HDF5:BOOL=ON -D HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc -D DOLFINX_ENABLE_PARMETIS:BOOL=OFF -D DOLFINX_ENABLE_SCOTCH:BOOL=ON -D DOLFINX_ENABLE_DOCS:BOOL=OFF -D DOLFINX_ENABLE_MPI:BOOL=ON -D MPIEXEC_PARAMS:STRING=--oversubscribe -D CMAKE_CXX_FLAGS:STRING=-fpermissive -D "DOLFINX_EXTRA_CXX_FLAGS:STRING=-g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security" /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp .. -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found suitable version "3.1", minimum required is "3") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found suitable version "3.1", minimum required is "3") -- Found MPI: TRUE (found suitable version "3.1", minimum required is "3") -- Performing Test HAVE_PIPE -- Performing Test HAVE_PIPE - Success -- Performing Test HAVE_PEDANTIC -- Performing Test HAVE_PEDANTIC - Success -- Performing Test HAVE_DEBUG -- Performing Test HAVE_DEBUG - Success -- Performing Test HAVE_O2_OPTIMISATION -- Performing Test HAVE_O2_OPTIMISATION - Success -- Found Boost 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer;filesystem -- Found boost_headers 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.74.0 -- Found boost_timer 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.74.0 -- [x] libboost_timer.so.1.74.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: chrono;headers -- Found boost_chrono 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_chrono-1.74.0 -- [x] libboost_chrono.so.1.74.0 -- [ ] libboost_chrono.a -- Adding boost_chrono dependencies: headers -- Found boost_filesystem 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_filesystem-1.74.0 -- [x] libboost_filesystem.so.1.74.0 -- [ ] libboost_filesystem.a -- Adding boost_filesystem dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70") found components: timer filesystem -- Found Eigen3: /usr/include/eigen3 (Required is at least version "3.2.90") -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Checking for one of the modules 'craypetsc_real;petsc;PETSc' -- Test PETSC_TEST_RUNS with shared library linking - Success -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - done -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- Found PETSc: TRUE (found suitable version "3.14.5", minimum required is "3.10") -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.6") -- Checking for package 'SCOTCH-PT' -- Found SCOTCH (version 6.1.0) -- Performing test SCOTCH_TEST_RUNS -- Performing test SCOTCH_TEST_RUNS - Success -- Found SCOTCH: /usr/lib/x86_64-linux-gnu/libptscotch.so;/usr/lib/x86_64-linux-gnu/libscotch.so;/usr/lib/x86_64-linux-gnu/libptscotcherr.so -- Found Python3: /usr/bin/python3.9 (found version "3.9.2") found components: Interpreter -- Asking Python module FFCX for location of UFC... () -- Found UFC: /usr/lib/python3/dist-packages/ffcx/codegeneration (Required is at least version "2019.2") -- Asking Python module for location of basix headers... -- Found basix: /usr/include (Required is at least version "0.0.1") -- Checking for one of the modules 'crayslepc_real;slepc;SLEPc' -- Test SLEPC_TEST_RUNS with shared library linking - Success -- Found SLEPc: TRUE (found suitable version "3.14.2", minimum required is "3.10") -- Checking for package 'KaHIP' -- KaHIP could not be found/configured. (missing: KAHIP_INCLUDE_DIRS KAHIP_LIBRARIES KAHIP_TEST_RUNS) -- The following features have been enabled: * BUILD_SHARED_LIBS, Build DOLFIN with shared libraries. * DOLFINX_ENABLE_SLEPC, Compile with support for SLEPc. * DOLFINX_ENABLE_KAHIP, Compile with support for KaHIP. -- The following OPTIONAL packages have been found: * SLEPc (required version >= 3.10), Scalable Library for Eigenvalue Problem Computations, -- The following REQUIRED packages have been found: * MPI (required version >= 3) * boost_chrono (required version == 1.74.0) * boost_timer (required version == 1.74.0) * boost_headers (required version == 1.74.0) * boost_filesystem (required version == 1.74.0) * Boost (required version >= 1.70), Boost C++ libraries, * Eigen3 (required version >= 3.2.90), Lightweight C++ template library for linear algebra, * PETSc (required version >= 3.10), Portable, Extensible Toolkit for Scientific Computation (PETSc), PETSc linear algebra backend * HDF5, Hierarchical Data Format 5 (HDF5), * SCOTCH, Programs and libraries for graph, mesh and hypergraph partitioning, Enables parallel graph partitioning * Python3 * UFC (required version >= 2019.2), Unified language for form-compilers (part of FFC-X), * basix (required version >= 0.0.1), FEniCS tabulation library, * PkgConfig -- The following features have been disabled: * DOLFINX_SKIP_BUILD_TESTS, Skip build tests for testing usability of dependency packages. * CMAKE_INSTALL_RPATH_USE_LINK_PATH, Add paths to linker search and installed rpath. * DOLFINX_ENABLE_PARMETIS, Compile with support for ParMETIS. -- The following OPTIONAL packages have not been found: * KaHIP, A family of graph partitioning programs, Enables parallel graph partitioning -- -- Copying demo and test data to build directory. -- ---------------------------------------------- -- -- Generating form files in demo and test directories. May take some time... -- ---------------------------------------------------------------------------------------- -- -- Generating CMakeLists.txt files in demo directory -- ------------------------------------------------------------------- -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY DOLFINX_ENABLE_DOCS DOLFINX_ENABLE_HDF5 DOLFINX_ENABLE_MPI DOLFINX_ENABLE_SCOTCH DOLFINX_ENABLE_TRILINOS MPIEXEC_PARAMS -- Build files have been written to: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real PETSC_DIR=/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex SLEPC_DIR=/usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-complex dh_auto_configure --builddir=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex -- -D CMAKE_BUILD_TYPE:STRING=RelWithDebInfo -D BUILD_SHARED_LIBS:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D DOLFINX_ENABLE_TRILINOS:BOOL=OFF -D DOLFINX_ENABLE_HDF5:BOOL=ON -D HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc -D DOLFINX_ENABLE_PARMETIS:BOOL=OFF -D DOLFINX_ENABLE_SCOTCH:BOOL=ON -D DOLFINX_ENABLE_DOCS:BOOL=OFF -D DOLFINX_ENABLE_MPI:BOOL=ON -D MPIEXEC_PARAMS:STRING="--oversubscribe" -D CMAKE_CXX_FLAGS:STRING="-fpermissive" -D DOLFINX_EXTRA_CXX_FLAGS:STRING="-g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security" /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp cd obj-x86_64-linux-gnu-complex && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -D CMAKE_BUILD_TYPE:STRING=RelWithDebInfo -D BUILD_SHARED_LIBS:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D DOLFINX_ENABLE_TRILINOS:BOOL=OFF -D DOLFINX_ENABLE_HDF5:BOOL=ON -D HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc -D DOLFINX_ENABLE_PARMETIS:BOOL=OFF -D DOLFINX_ENABLE_SCOTCH:BOOL=ON -D DOLFINX_ENABLE_DOCS:BOOL=OFF -D DOLFINX_ENABLE_MPI:BOOL=ON -D MPIEXEC_PARAMS:STRING=--oversubscribe -D CMAKE_CXX_FLAGS:STRING=-fpermissive -D "DOLFINX_EXTRA_CXX_FLAGS:STRING=-g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security" /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp .. -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found suitable version "3.1", minimum required is "3") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found suitable version "3.1", minimum required is "3") -- Found MPI: TRUE (found suitable version "3.1", minimum required is "3") -- Performing Test HAVE_PIPE -- Performing Test HAVE_PIPE - Success -- Performing Test HAVE_PEDANTIC -- Performing Test HAVE_PEDANTIC - Success -- Performing Test HAVE_DEBUG -- Performing Test HAVE_DEBUG - Success -- Performing Test HAVE_O2_OPTIMISATION -- Performing Test HAVE_O2_OPTIMISATION - Success -- Found Boost 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer;filesystem -- Found boost_headers 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.74.0 -- Found boost_timer 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.74.0 -- [x] libboost_timer.so.1.74.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: chrono;headers -- Found boost_chrono 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_chrono-1.74.0 -- [x] libboost_chrono.so.1.74.0 -- [ ] libboost_chrono.a -- Adding boost_chrono dependencies: headers -- Found boost_filesystem 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_filesystem-1.74.0 -- [x] libboost_filesystem.so.1.74.0 -- [ ] libboost_filesystem.a -- Adding boost_filesystem dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70") found components: timer filesystem -- Found Eigen3: /usr/include/eigen3 (Required is at least version "3.2.90") -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Checking for one of the modules 'craypetsc_real;petsc;PETSc' -- Test PETSC_TEST_RUNS with shared library linking - Success -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - done -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - found -- Found PETSc: TRUE (found suitable version "3.14.5", minimum required is "3.10") -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.6") -- Checking for package 'SCOTCH-PT' -- Found SCOTCH (version 6.1.0) -- Performing test SCOTCH_TEST_RUNS -- Performing test SCOTCH_TEST_RUNS - Success -- Found SCOTCH: /usr/lib/x86_64-linux-gnu/libptscotch.so;/usr/lib/x86_64-linux-gnu/libscotch.so;/usr/lib/x86_64-linux-gnu/libptscotcherr.so -- Found Python3: /usr/bin/python3.9 (found version "3.9.2") found components: Interpreter -- Asking Python module FFCX for location of UFC... () -- Found UFC: /usr/lib/python3/dist-packages/ffcx/codegeneration (Required is at least version "2019.2") -- Asking Python module for location of basix headers... -- Found basix: /usr/include (Required is at least version "0.0.1") -- Checking for one of the modules 'crayslepc_real;slepc;SLEPc' -- Test SLEPC_TEST_RUNS with shared library linking - Success -- Found SLEPc: TRUE (found suitable version "3.14.2", minimum required is "3.10") -- Checking for package 'KaHIP' -- KaHIP could not be found/configured. (missing: KAHIP_INCLUDE_DIRS KAHIP_LIBRARIES KAHIP_TEST_RUNS) -- The following features have been enabled: * BUILD_SHARED_LIBS, Build DOLFIN with shared libraries. * DOLFINX_ENABLE_SLEPC, Compile with support for SLEPc. * DOLFINX_ENABLE_KAHIP, Compile with support for KaHIP. -- The following OPTIONAL packages have been found: * SLEPc (required version >= 3.10), Scalable Library for Eigenvalue Problem Computations, -- The following REQUIRED packages have been found: * MPI (required version >= 3) * boost_chrono (required version == 1.74.0) * boost_timer (required version == 1.74.0) * boost_headers (required version == 1.74.0) * boost_filesystem (required version == 1.74.0) * Boost (required version >= 1.70), Boost C++ libraries, * Eigen3 (required version >= 3.2.90), Lightweight C++ template library for linear algebra, * PETSc (required version >= 3.10), Portable, Extensible Toolkit for Scientific Computation (PETSc), PETSc linear algebra backend * HDF5, Hierarchical Data Format 5 (HDF5), * SCOTCH, Programs and libraries for graph, mesh and hypergraph partitioning, Enables parallel graph partitioning * Python3 * UFC (required version >= 2019.2), Unified language for form-compilers (part of FFC-X), * basix (required version >= 0.0.1), FEniCS tabulation library, * PkgConfig -- The following features have been disabled: * DOLFINX_SKIP_BUILD_TESTS, Skip build tests for testing usability of dependency packages. * CMAKE_INSTALL_RPATH_USE_LINK_PATH, Add paths to linker search and installed rpath. * DOLFINX_ENABLE_PARMETIS, Compile with support for ParMETIS. -- The following OPTIONAL packages have not been found: * KaHIP, A family of graph partitioning programs, Enables parallel graph partitioning -- -- Copying demo and test data to build directory. -- ---------------------------------------------- -- -- Generating form files in demo and test directories. May take some time... -- ---------------------------------------------------------------------------------------- -- -- Generating CMakeLists.txt files in demo directory -- ------------------------------------------------------------------- -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY DOLFINX_ENABLE_DOCS DOLFINX_ENABLE_HDF5 DOLFINX_ENABLE_MPI DOLFINX_ENABLE_SCOTCH DOLFINX_ENABLE_TRILINOS MPIEXEC_PARAMS -- Build files have been written to: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex make[1]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a' debian/rules override_dh_auto_build make[1]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a' py3versions: no X-Python3-Version in control file, using supported versions PETSC_DIR=/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real dh_auto_build --builddir=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real cd obj-x86_64-linux-gnu-real && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real' /usr/bin/cmake -S/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp -B/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/CMakeFiles /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real' make -f dolfinx/CMakeFiles/dolfinx.dir/build.make dolfinx/CMakeFiles/dolfinx.dir/depend make[4]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real' cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/dolfinx /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/dolfinx/CMakeFiles/dolfinx.dir/DependInfo.cmake --color= Dependee "/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/dolfinx/CMakeFiles/dolfinx.dir/DependInfo.cmake" is newer than depender "/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/dolfinx/CMakeFiles/dolfinx.dir/depend.internal". Dependee "/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/dolfinx/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/dolfinx/CMakeFiles/dolfinx.dir/depend.internal". Scanning dependencies of target dolfinx make[4]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real' make -f dolfinx/CMakeFiles/dolfinx.dir/build.make dolfinx/CMakeFiles/dolfinx.dir/build make[4]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real' [ 1%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/log.cpp.o cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -o CMakeFiles/dolfinx.dir/common/log.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx/common/log.cpp [ 3%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/defines.cpp.o cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -Ddolfinx_EXPORTS -DDOLFINX_GIT_COMMIT_HASH=\"unknown\" -DUFC_SIGNATURE=\"ac78d56bf5c7fcc5585cc7f0654188e75f1c73b1\" -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -o CMakeFiles/dolfinx.dir/common/defines.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx/common/defines.cpp [ 4%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/init.cpp.o [ 6%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -o CMakeFiles/dolfinx.dir/common/init.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx/common/init.cpp cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -o CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx/common/IndexMap.cpp [ 7%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/MPI.cpp.o cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -o CMakeFiles/dolfinx.dir/common/MPI.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx/common/MPI.cpp [ 9%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/subsystem.cpp.o cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -o CMakeFiles/dolfinx.dir/common/subsystem.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx/common/subsystem.cpp [ 10%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/Table.cpp.o cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -o CMakeFiles/dolfinx.dir/common/Table.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx/common/Table.cpp [ 12%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/Timer.cpp.o cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/scotch 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object dolfinx/CMakeFiles/dolfinx.dir/io/XDMFFile.cpp.o cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. 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dolfinx/CMakeFiles/dolfinx.dir/la/PETScOptions.cpp.o cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -o CMakeFiles/dolfinx.dir/la/PETScOptions.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx/la/PETScOptions.cpp [ 75%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/la/PETScVector.cpp.o cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -o CMakeFiles/dolfinx.dir/la/PETScVector.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx/la/PETScVector.cpp [ 77%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/la/SLEPcEigenSolver.cpp.o cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -o CMakeFiles/dolfinx.dir/la/SLEPcEigenSolver.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx/la/SLEPcEigenSolver.cpp [ 78%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/la/SparsityPattern.cpp.o cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/dolfinx && 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/usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -o CMakeFiles/dolfinx.dir/la/VectorSpaceBasis.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx/la/VectorSpaceBasis.cpp [ 81%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/Mesh.cpp.o cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem 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dolfinx/CMakeFiles/dolfinx.dir/mesh/Topology.cpp.o cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -o CMakeFiles/dolfinx.dir/mesh/Topology.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx/mesh/Topology.cpp [ 86%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/cell_types.cpp.o cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem 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&& /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -o CMakeFiles/dolfinx.dir/mesh/permutationcomputation.cpp.o -c 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CMakeFiles/dolfinx.dir/fem/CoordinateElement.cpp.o CMakeFiles/dolfinx.dir/fem/DofMap.cpp.o CMakeFiles/dolfinx.dir/fem/ElementDofLayout.cpp.o CMakeFiles/dolfinx.dir/fem/FiniteElement.cpp.o CMakeFiles/dolfinx.dir/fem/FunctionSpace.cpp.o CMakeFiles/dolfinx.dir/fem/discreteoperators.cpp.o CMakeFiles/dolfinx.dir/fem/dofmapbuilder.cpp.o CMakeFiles/dolfinx.dir/fem/petsc.cpp.o CMakeFiles/dolfinx.dir/fem/sparsitybuild.cpp.o CMakeFiles/dolfinx.dir/fem/utils.cpp.o CMakeFiles/dolfinx.dir/generation/BoxMesh.cpp.o CMakeFiles/dolfinx.dir/generation/IntervalMesh.cpp.o CMakeFiles/dolfinx.dir/generation/RectangleMesh.cpp.o CMakeFiles/dolfinx.dir/geometry/BoundingBoxTree.cpp.o CMakeFiles/dolfinx.dir/geometry/gjk.cpp.o CMakeFiles/dolfinx.dir/geometry/utils.cpp.o CMakeFiles/dolfinx.dir/graph/boostordering.cpp.o CMakeFiles/dolfinx.dir/graph/kahip.cpp.o CMakeFiles/dolfinx.dir/graph/parmetis.cpp.o CMakeFiles/dolfinx.dir/graph/partition.cpp.o CMakeFiles/dolfinx.dir/graph/scotch.cpp.o CMakeFiles/dolfinx.dir/io/cells.cpp.o CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o CMakeFiles/dolfinx.dir/io/pugixml.cpp.o CMakeFiles/dolfinx.dir/io/VTKFile.cpp.o CMakeFiles/dolfinx.dir/io/VTKWriter.cpp.o CMakeFiles/dolfinx.dir/io/utils.cpp.o CMakeFiles/dolfinx.dir/io/XDMFFile.cpp.o CMakeFiles/dolfinx.dir/io/xdmf_function.cpp.o CMakeFiles/dolfinx.dir/io/xdmf_mesh.cpp.o CMakeFiles/dolfinx.dir/io/xdmf_utils.cpp.o CMakeFiles/dolfinx.dir/la/PETScKrylovSolver.cpp.o CMakeFiles/dolfinx.dir/la/PETScMatrix.cpp.o CMakeFiles/dolfinx.dir/la/PETScOperator.cpp.o CMakeFiles/dolfinx.dir/la/PETScOptions.cpp.o CMakeFiles/dolfinx.dir/la/PETScVector.cpp.o CMakeFiles/dolfinx.dir/la/SLEPcEigenSolver.cpp.o CMakeFiles/dolfinx.dir/la/SparsityPattern.cpp.o CMakeFiles/dolfinx.dir/la/VectorSpaceBasis.cpp.o CMakeFiles/dolfinx.dir/mesh/Mesh.cpp.o CMakeFiles/dolfinx.dir/mesh/Geometry.cpp.o CMakeFiles/dolfinx.dir/mesh/Topology.cpp.o CMakeFiles/dolfinx.dir/mesh/cell_types.cpp.o CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o CMakeFiles/dolfinx.dir/mesh/permutationcomputation.cpp.o CMakeFiles/dolfinx.dir/mesh/topologycomputation.cpp.o CMakeFiles/dolfinx.dir/mesh/utils.cpp.o CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o CMakeFiles/dolfinx.dir/refinement/refine.cpp.o CMakeFiles/dolfinx.dir/refinement/utils.cpp.o /usr/lib/x86_64-linux-gnu/libbasix.so /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/x86_64-linux-gnu/libptscotch.so /usr/lib/x86_64-linux-gnu/libscotch.so /usr/lib/x86_64-linux-gnu/libptscotcherr.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/lib/libpetsc_real.so cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/cmake -E cmake_symlink_library libdolfinx_real.so.2019.2.9.99 libdolfinx_real.so.2019.2 libdolfinx_real.so make[4]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real' [100%] Built target dolfinx make[3]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real' /usr/bin/cmake -E cmake_progress_start /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/CMakeFiles 0 make[2]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real' PETSC_DIR=/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex SLEPC_DIR=/usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-complex dh_auto_build --builddir=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex cd obj-x86_64-linux-gnu-complex && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex' /usr/bin/cmake -S/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp -B/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/CMakeFiles /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex' make -f dolfinx/CMakeFiles/dolfinx.dir/build.make 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Dependee "/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/dolfinx/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/dolfinx/CMakeFiles/dolfinx.dir/depend.internal". 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-ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -o CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx/common/IndexMap.cpp cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem 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-I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -o CMakeFiles/dolfinx.dir/common/MPI.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx/common/MPI.cpp [ 9%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/subsystem.cpp.o cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -o CMakeFiles/dolfinx.dir/common/subsystem.cpp.o -c 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/usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -o CMakeFiles/dolfinx.dir/generation/RectangleMesh.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx/generation/RectangleMesh.cpp [ 42%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/geometry/BoundingBoxTree.cpp.o cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx -isystem 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/usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -o CMakeFiles/dolfinx.dir/geometry/utils.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx/geometry/utils.cpp [ 46%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/graph/boostordering.cpp.o cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem 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dolfinx/CMakeFiles/dolfinx.dir/graph/parmetis.cpp.o cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. 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-I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -o CMakeFiles/dolfinx.dir/graph/scotch.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx/graph/scotch.cpp [ 54%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/cells.cpp.o cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ 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-I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -o CMakeFiles/dolfinx.dir/io/XDMFFile.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx/io/XDMFFile.cpp [ 65%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/xdmf_function.cpp.o cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/dolfinx && 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/usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -o CMakeFiles/dolfinx.dir/io/xdmf_mesh.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx/io/xdmf_mesh.cpp [ 68%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/xdmf_utils.cpp.o cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 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-I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -o CMakeFiles/dolfinx.dir/la/PETScOptions.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx/la/PETScOptions.cpp [ 75%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/la/PETScVector.cpp.o cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/dolfinx && 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/usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -o CMakeFiles/dolfinx.dir/la/SLEPcEigenSolver.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx/la/SLEPcEigenSolver.cpp [ 78%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/la/SparsityPattern.cpp.o cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem 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object dolfinx/CMakeFiles/dolfinx.dir/mesh/Mesh.cpp.o cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -o CMakeFiles/dolfinx.dir/mesh/Mesh.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx/mesh/Mesh.cpp [ 83%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/Geometry.cpp.o cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem 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-I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -o CMakeFiles/dolfinx.dir/mesh/Topology.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx/mesh/Topology.cpp [ 86%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/cell_types.cpp.o cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/dolfinx && 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/usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-complex/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -pthread -std=c++17 -o CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx/mesh/graphbuild.cpp [ 89%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/permutationcomputation.cpp.o cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem 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Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/utils.cpp.o cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-complex/include -fpermissive -g -O2 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CMakeFiles/dolfinx.dir/fem/petsc.cpp.o CMakeFiles/dolfinx.dir/fem/sparsitybuild.cpp.o CMakeFiles/dolfinx.dir/fem/utils.cpp.o CMakeFiles/dolfinx.dir/generation/BoxMesh.cpp.o CMakeFiles/dolfinx.dir/generation/IntervalMesh.cpp.o CMakeFiles/dolfinx.dir/generation/RectangleMesh.cpp.o CMakeFiles/dolfinx.dir/geometry/BoundingBoxTree.cpp.o CMakeFiles/dolfinx.dir/geometry/gjk.cpp.o CMakeFiles/dolfinx.dir/geometry/utils.cpp.o CMakeFiles/dolfinx.dir/graph/boostordering.cpp.o CMakeFiles/dolfinx.dir/graph/kahip.cpp.o CMakeFiles/dolfinx.dir/graph/parmetis.cpp.o CMakeFiles/dolfinx.dir/graph/partition.cpp.o CMakeFiles/dolfinx.dir/graph/scotch.cpp.o CMakeFiles/dolfinx.dir/io/cells.cpp.o CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o CMakeFiles/dolfinx.dir/io/pugixml.cpp.o CMakeFiles/dolfinx.dir/io/VTKFile.cpp.o CMakeFiles/dolfinx.dir/io/VTKWriter.cpp.o CMakeFiles/dolfinx.dir/io/utils.cpp.o CMakeFiles/dolfinx.dir/io/XDMFFile.cpp.o CMakeFiles/dolfinx.dir/io/xdmf_function.cpp.o CMakeFiles/dolfinx.dir/io/xdmf_mesh.cpp.o CMakeFiles/dolfinx.dir/io/xdmf_utils.cpp.o CMakeFiles/dolfinx.dir/la/PETScKrylovSolver.cpp.o CMakeFiles/dolfinx.dir/la/PETScMatrix.cpp.o CMakeFiles/dolfinx.dir/la/PETScOperator.cpp.o CMakeFiles/dolfinx.dir/la/PETScOptions.cpp.o CMakeFiles/dolfinx.dir/la/PETScVector.cpp.o CMakeFiles/dolfinx.dir/la/SLEPcEigenSolver.cpp.o CMakeFiles/dolfinx.dir/la/SparsityPattern.cpp.o CMakeFiles/dolfinx.dir/la/VectorSpaceBasis.cpp.o CMakeFiles/dolfinx.dir/mesh/Mesh.cpp.o CMakeFiles/dolfinx.dir/mesh/Geometry.cpp.o CMakeFiles/dolfinx.dir/mesh/Topology.cpp.o CMakeFiles/dolfinx.dir/mesh/cell_types.cpp.o CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o CMakeFiles/dolfinx.dir/mesh/permutationcomputation.cpp.o CMakeFiles/dolfinx.dir/mesh/topologycomputation.cpp.o CMakeFiles/dolfinx.dir/mesh/utils.cpp.o CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o CMakeFiles/dolfinx.dir/refinement/refine.cpp.o CMakeFiles/dolfinx.dir/refinement/utils.cpp.o /usr/lib/x86_64-linux-gnu/libbasix.so /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/x86_64-linux-gnu/libptscotch.so /usr/lib/x86_64-linux-gnu/libscotch.so /usr/lib/x86_64-linux-gnu/libptscotcherr.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-complex/lib/libslepc_complex.so /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/lib/libpetsc_complex.so cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/cmake -E cmake_symlink_library libdolfinx_complex.so.2019.2.9.99 libdolfinx_complex.so.2019.2 libdolfinx_complex.so make[4]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex' [100%] Built target dolfinx make[3]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex' /usr/bin/cmake -E cmake_progress_start /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/CMakeFiles 0 make[2]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex' make[1]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a' debian/rules override_dh_auto_test-arch make[1]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a' py3versions: no X-Python3-Version in control file, using supported versions echo "Tests must be run after installation" Tests must be run after installation make[1]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch py3versions: no X-Python3-Version in control file, using supported versions dh binary-arch --buildsystem=cmake --with python3,sphinxdoc dh_testroot -a -O--buildsystem=cmake dh_prep -a -O--buildsystem=cmake debian/rules override_dh_auto_install-arch make[1]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a' py3versions: no X-Python3-Version in control file, using supported versions dh_auto_install --builddir=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real --destdir=debian/tmp-real cd obj-x86_64-linux-gnu-real && make -j4 install DESTDIR=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real' /usr/bin/cmake -S/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp -B/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RelWithDebInfo" -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/x86_64-linux-gnu/dolfinx/dolfinx.conf -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/share/dolfinx/demo -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/share/dolfinx/demo/hyperelasticity -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/share/dolfinx/demo/hyperelasticity/hyperelasticity.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/share/dolfinx/demo/hyperelasticity/main.cpp -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/share/dolfinx/demo/hyperelasticity/hyperelasticity.c -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/share/dolfinx/demo/hyperelasticity/CMakeLists.txt -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/share/dolfinx/demo/hyperelasticity/hyperelasticity.ufl -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/share/dolfinx/demo/poisson -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/share/dolfinx/demo/poisson/main.cpp -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/share/dolfinx/demo/poisson/CMakeLists.txt -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/share/dolfinx/demo/poisson/poisson.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/share/dolfinx/demo/poisson/poisson.c -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/share/dolfinx/demo/poisson/poisson.ufl -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/share/dolfinx/demo/CMakeLists.txt -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.2019.2.9.99 -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.2019.2 -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXTargets.cmake -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXTargets-relwithdebinfo.cmake -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/common/defines.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/common/dolfin_common.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/common/dolfin_doc.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/common/IndexMap.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/common/init.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/common/log.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/common/loguru.hpp -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/common/MPI.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/common/subsystem.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/common/Table.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/common/Timer.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/common/TimeLogger.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/common/TimeLogManager.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/common/span.hpp -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/common/timing.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/common/types.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/common/UniqueIdGenerator.h -- Installing: 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/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/geometry/BoundingBoxTree.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/geometry/gjk.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/geometry/dolfin_geometry.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/geometry/utils.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/graph/AdjacencyList.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/graph/boostordering.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/graph/dolfin_graph.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/graph/kahip.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/graph/parmetis.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/graph/partition.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/graph/scotch.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/io/dolfin_io.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/io/cells.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/io/HDF5Interface.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/io/pugiconfig.hpp -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/io/pugixml.hpp -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/io/utils.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/io/VTKFile.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/io/VTKWriter.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/io/XDMFFile.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/io/xdmf_function.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/io/xdmf_mesh.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/io/xdmf_meshtags.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/io/xdmf_read.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/io/xdmf_utils.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/la/dolfin_la.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/la/PETScKrylovSolver.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/la/PETScMatrix.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/la/PETScOperator.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/la/PETScOptions.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/la/PETScVector.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/la/SLEPcEigenSolver.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/la/SparsityPattern.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/la/utils.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/la/Vector.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/la/VectorSpaceBasis.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/mesh/dolfin_mesh.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/mesh/Mesh.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/mesh/Geometry.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/mesh/Topology.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/mesh/MeshTags.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/mesh/cell_types.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/mesh/graphbuild.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/mesh/permutationcomputation.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/mesh/topologycomputation.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/mesh/utils.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/nls/dolfin_nls.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/nls/NewtonSolver.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/refinement/dolfin_refinement.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/refinement/plaza.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/refinement/refine.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include/dolfinx/refinement/utils.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx/FindPETSc.cmake -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx/FindSLEPc.cmake -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfig.cmake -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfigVersion.cmake -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/x86_64-linux-gnu/pkgconfig/dolfinx_real.pc ---------------------------------------------------------------------------- DOLFINX has now been installed in /usr and the demo programs have been installed in /usr/share/dolfinx/demo Don't forget to update your environment variables. This can be done easily using the helper file 'dolfinx.conf' which sets the appropriate variables (for users of the Bash shell). To update your environment variables, run the following command: source /usr/share/dolfinx/dolfinx.conf ---------------------------------------------------------------------------- make[2]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real' for build in real; do \ for v in python3.9; do \ cd python; \ PATH=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-${build}/usr/bin:$PATH \ PETSC_DIR=/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-${build} SLEPC_DIR=/usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-${build} \ CXXFLAGS="-g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-${build}/usr/include" \ VERBOSE=1 \ $v setup.py build --build-base=build-${build} install --root=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-${build} --install-layout=deb; \ cd ..; \ done; \ done running build running build_py creating build-real creating build-real/lib.linux-x86_64-3.9 creating build-real/lib.linux-x86_64-3.9/dolfinx copying dolfinx/log.py -> build-real/lib.linux-x86_64-3.9/dolfinx copying dolfinx/plot.py -> build-real/lib.linux-x86_64-3.9/dolfinx copying dolfinx/__init__.py -> build-real/lib.linux-x86_64-3.9/dolfinx copying dolfinx/pkgconfig.py -> build-real/lib.linux-x86_64-3.9/dolfinx copying dolfinx/mesh.py -> build-real/lib.linux-x86_64-3.9/dolfinx copying dolfinx/common.py -> build-real/lib.linux-x86_64-3.9/dolfinx copying dolfinx/jit.py -> build-real/lib.linux-x86_64-3.9/dolfinx copying dolfinx/io.py -> build-real/lib.linux-x86_64-3.9/dolfinx copying dolfinx/generation.py -> build-real/lib.linux-x86_64-3.9/dolfinx copying dolfinx/geometry.py -> build-real/lib.linux-x86_64-3.9/dolfinx creating build-real/lib.linux-x86_64-3.9/dolfinx/fem copying dolfinx/fem/assemble.py -> build-real/lib.linux-x86_64-3.9/dolfinx/fem copying dolfinx/fem/__init__.py -> build-real/lib.linux-x86_64-3.9/dolfinx/fem copying dolfinx/fem/form.py -> build-real/lib.linux-x86_64-3.9/dolfinx/fem copying dolfinx/fem/dirichletbc.py -> build-real/lib.linux-x86_64-3.9/dolfinx/fem copying dolfinx/fem/coordinatemapping.py -> build-real/lib.linux-x86_64-3.9/dolfinx/fem copying dolfinx/fem/problem.py -> build-real/lib.linux-x86_64-3.9/dolfinx/fem copying dolfinx/fem/formmanipulations.py -> build-real/lib.linux-x86_64-3.9/dolfinx/fem copying dolfinx/fem/dofmap.py -> build-real/lib.linux-x86_64-3.9/dolfinx/fem copying dolfinx/fem/linearproblem.py -> build-real/lib.linux-x86_64-3.9/dolfinx/fem copying dolfinx/fem/function.py -> build-real/lib.linux-x86_64-3.9/dolfinx/fem creating build-real/lib.linux-x86_64-3.9/dolfinx/la copying dolfinx/la/__init__.py -> build-real/lib.linux-x86_64-3.9/dolfinx/la copying dolfinx/la/solver.py -> build-real/lib.linux-x86_64-3.9/dolfinx/la creating build-real/lib.linux-x86_64-3.9/dolfinx/wrappers copying dolfinx/wrappers/__init__.py -> build-real/lib.linux-x86_64-3.9/dolfinx/wrappers package init file 'dolfinx_utils/test/__init__.py' not found (or not a regular file) creating build-real/lib.linux-x86_64-3.9/dolfinx_utils creating build-real/lib.linux-x86_64-3.9/dolfinx_utils/test copying dolfinx_utils/test/skips.py -> build-real/lib.linux-x86_64-3.9/dolfinx_utils/test copying dolfinx_utils/test/fixtures.py -> build-real/lib.linux-x86_64-3.9/dolfinx_utils/test copying dolfinx/wrappers/array.h -> build-real/lib.linux-x86_64-3.9/dolfinx/wrappers copying dolfinx/wrappers/MPICommWrapper.h -> build-real/lib.linux-x86_64-3.9/dolfinx/wrappers copying dolfinx/wrappers/caster_petsc.h -> build-real/lib.linux-x86_64-3.9/dolfinx/wrappers copying dolfinx/wrappers/caster_mpi.h -> build-real/lib.linux-x86_64-3.9/dolfinx/wrappers running build_ext Re-run cmake no build system arguments -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found Boost 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer;filesystem -- Found boost_headers 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.74.0 -- Found boost_timer 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.74.0 -- [x] libboost_timer.so.1.74.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: chrono;headers -- Found boost_chrono 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_chrono-1.74.0 -- [x] libboost_chrono.so.1.74.0 -- [ ] libboost_chrono.a -- Adding boost_chrono dependencies: headers -- Found boost_filesystem 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_filesystem-1.74.0 -- [x] libboost_filesystem.so.1.74.0 -- [ ] libboost_filesystem.a -- Adding boost_filesystem dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70") found components: timer filesystem -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Checking for one of the modules 'craypetsc_real;petsc;PETSc' -- Looking for sys/types.h CMake Warning (dev) at /usr/share/cmake-3.18/Modules/CheckIncludeFile.cmake:80 (message): Policy CMP0075 is not set: Include file check macros honor CMAKE_REQUIRED_LIBRARIES. Run "cmake --help-policy CMP0075" for policy details. Use the cmake_policy command to set the policy and suppress this warning. CMAKE_REQUIRED_LIBRARIES is set to: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so For compatibility with CMake 3.11 and below this check is ignoring it. Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/CheckTypeSize.cmake:230 (check_include_file) /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx/FindPETSc.cmake:222 (check_type_size) /usr/share/cmake-3.18/Modules/CMakeFindDependencyMacro.cmake:47 (find_package) /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfig.cmake:61 (find_dependency) CMakeLists.txt:13 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - done -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- Checking for one of the modules 'crayslepc_real;slepc;SLEPc' -- Found PythonInterp: /usr/bin/python3.9 (found version "3.9.2") -- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython3.9.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.6.2" ) -- Performing Test HAVE_PEDANTIC -- Performing Test HAVE_PEDANTIC - Success -- Checking for package 'PETSc4Py' -- petsc4py version 3.14.1 found -- Found PETSc4py: /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -- Found MPI4PY: /usr/lib/python3/dist-packages/mpi4py/include -- Configuring done -- Generating done -- Build files have been written to: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-real/temp.linux-x86_64-3.9 gmake[2]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-real/temp.linux-x86_64-3.9' /usr/bin/cmake -S/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python -B/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-real/temp.linux-x86_64-3.9 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-real/temp.linux-x86_64-3.9/CMakeFiles /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-real/temp.linux-x86_64-3.9//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[3]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-real/temp.linux-x86_64-3.9' /usr/bin/gmake -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/depend gmake[4]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-real/temp.linux-x86_64-3.9' cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-real/temp.linux-x86_64-3.9 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-real/temp.linux-x86_64-3.9 /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-real/temp.linux-x86_64-3.9 /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-real/temp.linux-x86_64-3.9/CMakeFiles/cpp.dir/DependInfo.cmake --color= Dependee "/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-real/temp.linux-x86_64-3.9/CMakeFiles/cpp.dir/DependInfo.cmake" is newer than depender "/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-real/temp.linux-x86_64-3.9/CMakeFiles/cpp.dir/depend.internal". Dependee "/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-real/temp.linux-x86_64-3.9/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-real/temp.linux-x86_64-3.9/CMakeFiles/cpp.dir/depend.internal". Scanning dependencies of target cpp gmake[4]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-real/temp.linux-x86_64-3.9' /usr/bin/gmake -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/build gmake[4]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-real/temp.linux-x86_64-3.9' [ 7%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/dolfin.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_PYBIND11_MPI4PY -DHAS_SLEPC -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.9 -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem 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/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include -DVERSION_INFO=\"2019.2.0.dev0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -std=c++17 -o CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/dolfinx/wrappers/refinement.cpp [100%] Linking CXX shared library ../lib.linux-x86_64-3.9/dolfinx/cpp.cpython-39-x86_64-linux-gnu.so /usr/bin/cmake -E cmake_link_script CMakeFiles/cpp.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include -DVERSION_INFO=\"2019.2.0.dev0\" -O3 -DNDEBUG -flto -pthread -Wl,-z,relro -shared -Wl,-soname,cpp.cpython-39-x86_64-linux-gnu.so -o ../lib.linux-x86_64-3.9/dolfinx/cpp.cpython-39-x86_64-linux-gnu.so CMakeFiles/cpp.dir/dolfinx/wrappers/dolfin.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/common.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/fem.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/generation.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/geometry.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/graph.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/io.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/la.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/log.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/mesh.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/nls.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o -Wl,-rpath,/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/lib /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.2019.2.9.99 /usr/lib/x86_64-linux-gnu/libbasix.so /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/bin/strip /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-real/lib.linux-x86_64-3.9/dolfinx/cpp.cpython-39-x86_64-linux-gnu.so gmake[4]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-real/temp.linux-x86_64-3.9' [100%] Built target cpp gmake[3]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-real/temp.linux-x86_64-3.9' /usr/bin/cmake -E cmake_progress_start /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-real/temp.linux-x86_64-3.9/CMakeFiles 0 gmake[2]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-real/temp.linux-x86_64-3.9' running install running install_lib creating /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3 creating /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages creating /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx copying build-real/lib.linux-x86_64-3.9/dolfinx/log.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx copying build-real/lib.linux-x86_64-3.9/dolfinx/plot.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx copying build-real/lib.linux-x86_64-3.9/dolfinx/__init__.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx copying build-real/lib.linux-x86_64-3.9/dolfinx/pkgconfig.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx copying build-real/lib.linux-x86_64-3.9/dolfinx/mesh.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx copying build-real/lib.linux-x86_64-3.9/dolfinx/common.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx copying build-real/lib.linux-x86_64-3.9/dolfinx/jit.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx copying build-real/lib.linux-x86_64-3.9/dolfinx/io.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx creating /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/wrappers copying build-real/lib.linux-x86_64-3.9/dolfinx/wrappers/__init__.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/wrappers copying build-real/lib.linux-x86_64-3.9/dolfinx/wrappers/array.h -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/wrappers copying build-real/lib.linux-x86_64-3.9/dolfinx/wrappers/MPICommWrapper.h -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/wrappers copying build-real/lib.linux-x86_64-3.9/dolfinx/wrappers/caster_petsc.h -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/wrappers copying build-real/lib.linux-x86_64-3.9/dolfinx/wrappers/caster_mpi.h -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/wrappers copying build-real/lib.linux-x86_64-3.9/dolfinx/generation.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx creating /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/la copying build-real/lib.linux-x86_64-3.9/dolfinx/la/__init__.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/la copying build-real/lib.linux-x86_64-3.9/dolfinx/la/solver.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/la creating /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem copying build-real/lib.linux-x86_64-3.9/dolfinx/fem/assemble.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem copying build-real/lib.linux-x86_64-3.9/dolfinx/fem/__init__.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem copying build-real/lib.linux-x86_64-3.9/dolfinx/fem/form.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem copying build-real/lib.linux-x86_64-3.9/dolfinx/fem/dirichletbc.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem copying build-real/lib.linux-x86_64-3.9/dolfinx/fem/coordinatemapping.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem copying build-real/lib.linux-x86_64-3.9/dolfinx/fem/problem.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem copying build-real/lib.linux-x86_64-3.9/dolfinx/fem/formmanipulations.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem copying build-real/lib.linux-x86_64-3.9/dolfinx/fem/dofmap.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem copying build-real/lib.linux-x86_64-3.9/dolfinx/fem/linearproblem.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem copying build-real/lib.linux-x86_64-3.9/dolfinx/fem/function.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem copying build-real/lib.linux-x86_64-3.9/dolfinx/geometry.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx copying build-real/lib.linux-x86_64-3.9/dolfinx/cpp.cpython-39-x86_64-linux-gnu.so -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx creating /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx_utils creating /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx_utils/test copying build-real/lib.linux-x86_64-3.9/dolfinx_utils/test/skips.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx_utils/test copying build-real/lib.linux-x86_64-3.9/dolfinx_utils/test/fixtures.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx_utils/test byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/log.py to log.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/plot.py to plot.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/__init__.py to __init__.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/pkgconfig.py to pkgconfig.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/mesh.py to mesh.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/common.py to common.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/jit.py to jit.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/io.py to io.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/wrappers/__init__.py to __init__.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/generation.py to generation.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/la/__init__.py to __init__.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/la/solver.py to solver.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem/assemble.py to assemble.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem/__init__.py to __init__.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem/form.py to form.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem/dirichletbc.py to dirichletbc.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem/coordinatemapping.py to coordinatemapping.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem/problem.py to problem.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem/formmanipulations.py to formmanipulations.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem/dofmap.py to dofmap.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem/linearproblem.py to linearproblem.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/fem/function.py to function.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx/geometry.py to geometry.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx_utils/test/skips.py to skips.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/dolfinx_utils/test/fixtures.py to fixtures.cpython-39.pyc running install_egg_info running egg_info creating fenics_dolfinx.egg-info writing fenics_dolfinx.egg-info/PKG-INFO writing dependency_links to fenics_dolfinx.egg-info/dependency_links.txt writing requirements to fenics_dolfinx.egg-info/requires.txt writing top-level names to fenics_dolfinx.egg-info/top_level.txt writing manifest file 'fenics_dolfinx.egg-info/SOURCES.txt' reading manifest file 'fenics_dolfinx.egg-info/SOURCES.txt' writing manifest file 'fenics_dolfinx.egg-info/SOURCES.txt' Copying fenics_dolfinx.egg-info to /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/python3/dist-packages/fenics_dolfinx-2019.2.0.dev0.egg-info Skipping SOURCES.txt running install_scripts dh_auto_install -a --builddir=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex --destdir=debian/tmp-complex cd obj-x86_64-linux-gnu-complex && make -j4 install DESTDIR=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex' /usr/bin/cmake -S/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/cpp -B/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RelWithDebInfo" -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/x86_64-linux-gnu/dolfinx/dolfinx.conf -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/share/dolfinx/demo -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/share/dolfinx/demo/poisson -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/share/dolfinx/demo/poisson/main.cpp -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/share/dolfinx/demo/poisson/CMakeLists.txt -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/share/dolfinx/demo/poisson/poisson.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/share/dolfinx/demo/poisson/poisson.c -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/share/dolfinx/demo/poisson/poisson.ufl -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/share/dolfinx/demo/CMakeLists.txt -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.2019.2.9.99 -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.2019.2 -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXTargets.cmake -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXTargets-relwithdebinfo.cmake -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/common/defines.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/common/dolfin_common.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/common/dolfin_doc.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/common/IndexMap.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/common/init.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/common/log.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/common/loguru.hpp -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/common/MPI.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/common/subsystem.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/common/Table.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/common/Timer.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/common/TimeLogger.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/common/TimeLogManager.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/common/span.hpp -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/common/timing.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/common/types.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/common/UniqueIdGenerator.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/common/utils.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/common/version.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/fem/Constant.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/fem/CoordinateElement.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/fem/DirichletBC.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/fem/DofMap.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/fem/ElementDofLayout.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/fem/Expression.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/fem/FiniteElement.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/fem/Form.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/fem/Function.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/fem/FunctionSpace.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/fem/assembler.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/fem/assemble_matrix_impl.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/fem/assemble_scalar_impl.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/fem/assemble_vector_impl.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/fem/discreteoperators.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/fem/dofmapbuilder.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/fem/dolfin_fem.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/fem/evaluate.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/fem/interpolate.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/fem/petsc.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/fem/sparsitybuild.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/fem/utils.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/generation/BoxMesh.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/generation/dolfin_generation.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/generation/IntervalMesh.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/generation/RectangleMesh.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/geometry/BoundingBoxTree.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/geometry/gjk.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/geometry/dolfin_geometry.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/geometry/utils.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/graph/AdjacencyList.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/graph/boostordering.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/graph/dolfin_graph.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/graph/kahip.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/graph/parmetis.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/graph/partition.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/graph/scotch.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/io/dolfin_io.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/io/cells.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/io/HDF5Interface.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/io/pugiconfig.hpp -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/io/pugixml.hpp -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/io/utils.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/io/VTKFile.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/io/VTKWriter.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/io/XDMFFile.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/io/xdmf_function.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/io/xdmf_mesh.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/io/xdmf_meshtags.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/io/xdmf_read.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/io/xdmf_utils.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/la/dolfin_la.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/la/PETScKrylovSolver.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/la/PETScMatrix.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/la/PETScOperator.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/la/PETScOptions.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/la/PETScVector.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/la/SLEPcEigenSolver.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/la/SparsityPattern.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/la/utils.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/la/Vector.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/la/VectorSpaceBasis.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/mesh/dolfin_mesh.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/mesh/Mesh.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/mesh/Geometry.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/mesh/Topology.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/mesh/MeshTags.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/mesh/cell_types.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/mesh/graphbuild.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/mesh/permutationcomputation.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/mesh/topologycomputation.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/mesh/utils.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/nls/dolfin_nls.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/nls/NewtonSolver.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/refinement/dolfin_refinement.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/refinement/plaza.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/refinement/refine.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include/dolfinx/refinement/utils.h -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/FindPETSc.cmake -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/FindSLEPc.cmake -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfig.cmake -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfigVersion.cmake -- Installing: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/x86_64-linux-gnu/pkgconfig/dolfinx_complex.pc ---------------------------------------------------------------------------- DOLFINX has now been installed in /usr and the demo programs have been installed in /usr/share/dolfinx/demo Don't forget to update your environment variables. This can be done easily using the helper file 'dolfinx.conf' which sets the appropriate variables (for users of the Bash shell). To update your environment variables, run the following command: source /usr/share/dolfinx/dolfinx.conf ---------------------------------------------------------------------------- make[2]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex' dh_numpy3 -a for build in complex; do \ for v in python3.9; do \ cd python; \ PATH=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-${build}/usr/bin:$PATH \ PETSC_DIR=/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-${build} SLEPC_DIR=/usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-${build} \ CXXFLAGS="-g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-${build}/usr/include" \ VERBOSE=1 \ $v setup.py build --build-base=build-${build} install --root=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-${build} --install-layout=deb; \ cd ..; \ done; \ done running build running build_py creating build-complex creating build-complex/lib.linux-x86_64-3.9 creating build-complex/lib.linux-x86_64-3.9/dolfinx copying dolfinx/log.py -> build-complex/lib.linux-x86_64-3.9/dolfinx copying dolfinx/plot.py -> build-complex/lib.linux-x86_64-3.9/dolfinx copying dolfinx/__init__.py -> build-complex/lib.linux-x86_64-3.9/dolfinx copying dolfinx/pkgconfig.py -> build-complex/lib.linux-x86_64-3.9/dolfinx copying dolfinx/mesh.py -> build-complex/lib.linux-x86_64-3.9/dolfinx copying dolfinx/common.py -> build-complex/lib.linux-x86_64-3.9/dolfinx copying dolfinx/jit.py -> build-complex/lib.linux-x86_64-3.9/dolfinx copying dolfinx/io.py -> build-complex/lib.linux-x86_64-3.9/dolfinx copying dolfinx/generation.py -> build-complex/lib.linux-x86_64-3.9/dolfinx copying dolfinx/geometry.py -> build-complex/lib.linux-x86_64-3.9/dolfinx creating build-complex/lib.linux-x86_64-3.9/dolfinx/fem copying dolfinx/fem/assemble.py -> build-complex/lib.linux-x86_64-3.9/dolfinx/fem copying dolfinx/fem/__init__.py -> build-complex/lib.linux-x86_64-3.9/dolfinx/fem copying dolfinx/fem/form.py -> build-complex/lib.linux-x86_64-3.9/dolfinx/fem copying dolfinx/fem/dirichletbc.py -> build-complex/lib.linux-x86_64-3.9/dolfinx/fem copying dolfinx/fem/coordinatemapping.py -> build-complex/lib.linux-x86_64-3.9/dolfinx/fem copying dolfinx/fem/problem.py -> build-complex/lib.linux-x86_64-3.9/dolfinx/fem copying dolfinx/fem/formmanipulations.py -> build-complex/lib.linux-x86_64-3.9/dolfinx/fem copying dolfinx/fem/dofmap.py -> build-complex/lib.linux-x86_64-3.9/dolfinx/fem copying dolfinx/fem/linearproblem.py -> build-complex/lib.linux-x86_64-3.9/dolfinx/fem copying dolfinx/fem/function.py -> build-complex/lib.linux-x86_64-3.9/dolfinx/fem creating build-complex/lib.linux-x86_64-3.9/dolfinx/la copying dolfinx/la/__init__.py -> build-complex/lib.linux-x86_64-3.9/dolfinx/la copying dolfinx/la/solver.py -> build-complex/lib.linux-x86_64-3.9/dolfinx/la creating build-complex/lib.linux-x86_64-3.9/dolfinx/wrappers copying dolfinx/wrappers/__init__.py -> build-complex/lib.linux-x86_64-3.9/dolfinx/wrappers package init file 'dolfinx_utils/test/__init__.py' not found (or not a regular file) creating build-complex/lib.linux-x86_64-3.9/dolfinx_utils creating build-complex/lib.linux-x86_64-3.9/dolfinx_utils/test copying dolfinx_utils/test/skips.py -> build-complex/lib.linux-x86_64-3.9/dolfinx_utils/test copying dolfinx_utils/test/fixtures.py -> build-complex/lib.linux-x86_64-3.9/dolfinx_utils/test copying dolfinx/wrappers/array.h -> build-complex/lib.linux-x86_64-3.9/dolfinx/wrappers copying dolfinx/wrappers/MPICommWrapper.h -> build-complex/lib.linux-x86_64-3.9/dolfinx/wrappers copying dolfinx/wrappers/caster_petsc.h -> build-complex/lib.linux-x86_64-3.9/dolfinx/wrappers copying dolfinx/wrappers/caster_mpi.h -> build-complex/lib.linux-x86_64-3.9/dolfinx/wrappers running build_ext Re-run cmake no build system arguments -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found Boost 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer;filesystem -- Found boost_headers 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.74.0 -- Found boost_timer 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.74.0 -- [x] libboost_timer.so.1.74.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: chrono;headers -- Found boost_chrono 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_chrono-1.74.0 -- [x] libboost_chrono.so.1.74.0 -- [ ] libboost_chrono.a -- Adding boost_chrono dependencies: headers -- Found boost_filesystem 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_filesystem-1.74.0 -- [x] libboost_filesystem.so.1.74.0 -- [ ] libboost_filesystem.a -- Adding boost_filesystem dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70") found components: timer filesystem -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Checking for one of the modules 'craypetsc_real;petsc;PETSc' -- Looking for sys/types.h CMake Warning (dev) at /usr/share/cmake-3.18/Modules/CheckIncludeFile.cmake:80 (message): Policy CMP0075 is not set: Include file check macros honor CMAKE_REQUIRED_LIBRARIES. Run "cmake --help-policy CMP0075" for policy details. Use the cmake_policy command to set the policy and suppress this warning. CMAKE_REQUIRED_LIBRARIES is set to: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so For compatibility with CMake 3.11 and below this check is ignoring it. Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/CheckTypeSize.cmake:230 (check_include_file) /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/FindPETSc.cmake:222 (check_type_size) /usr/share/cmake-3.18/Modules/CMakeFindDependencyMacro.cmake:47 (find_package) /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfig.cmake:61 (find_dependency) CMakeLists.txt:13 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - done -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - found -- Checking for one of the modules 'crayslepc_real;slepc;SLEPc' -- Found PythonInterp: /usr/bin/python3.9 (found version "3.9.2") -- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython3.9.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.6.2" ) -- Performing Test HAVE_PEDANTIC -- Performing Test HAVE_PEDANTIC - Success -- Checking for package 'PETSc4Py' -- petsc4py version 3.14.1 found -- Found PETSc4py: /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -- Found MPI4PY: /usr/lib/python3/dist-packages/mpi4py/include -- Configuring done -- Generating done -- Build files have been written to: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-complex/temp.linux-x86_64-3.9 gmake[2]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-complex/temp.linux-x86_64-3.9' /usr/bin/cmake -S/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python -B/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-complex/temp.linux-x86_64-3.9 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-complex/temp.linux-x86_64-3.9/CMakeFiles /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-complex/temp.linux-x86_64-3.9//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[3]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-complex/temp.linux-x86_64-3.9' /usr/bin/gmake -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/depend gmake[4]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-complex/temp.linux-x86_64-3.9' cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-complex/temp.linux-x86_64-3.9 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-complex/temp.linux-x86_64-3.9 /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-complex/temp.linux-x86_64-3.9 /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-complex/temp.linux-x86_64-3.9/CMakeFiles/cpp.dir/DependInfo.cmake --color= Dependee "/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-complex/temp.linux-x86_64-3.9/CMakeFiles/cpp.dir/DependInfo.cmake" is newer than depender "/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-complex/temp.linux-x86_64-3.9/CMakeFiles/cpp.dir/depend.internal". Dependee "/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-complex/temp.linux-x86_64-3.9/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-complex/temp.linux-x86_64-3.9/CMakeFiles/cpp.dir/depend.internal". Scanning dependencies of target cpp gmake[4]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-complex/temp.linux-x86_64-3.9' /usr/bin/gmake -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/build gmake[4]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-complex/temp.linux-x86_64-3.9' [ 7%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/dolfin.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_PYBIND11_MPI4PY -DHAS_SLEPC -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.9 -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include -DVERSION_INFO=\"2019.2.0.dev0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -std=c++17 -o CMakeFiles/cpp.dir/dolfinx/wrappers/dolfin.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/dolfinx/wrappers/dolfin.cpp [ 15%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/common.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_PYBIND11_MPI4PY -DHAS_SLEPC -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.9 -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include -DVERSION_INFO=\"2019.2.0.dev0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -std=c++17 -o CMakeFiles/cpp.dir/dolfinx/wrappers/common.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/dolfinx/wrappers/common.cpp [ 23%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/fem.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_PYBIND11_MPI4PY -DHAS_SLEPC -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.9 -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include -DVERSION_INFO=\"2019.2.0.dev0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -std=c++17 -o CMakeFiles/cpp.dir/dolfinx/wrappers/fem.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/dolfinx/wrappers/fem.cpp [ 30%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/generation.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_PYBIND11_MPI4PY -DHAS_SLEPC -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.9 -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include -DVERSION_INFO=\"2019.2.0.dev0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -std=c++17 -o CMakeFiles/cpp.dir/dolfinx/wrappers/generation.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/dolfinx/wrappers/generation.cpp [ 38%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/geometry.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_PYBIND11_MPI4PY -DHAS_SLEPC -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.9 -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include -DVERSION_INFO=\"2019.2.0.dev0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -std=c++17 -o CMakeFiles/cpp.dir/dolfinx/wrappers/geometry.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/dolfinx/wrappers/geometry.cpp [ 46%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/graph.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_PYBIND11_MPI4PY -DHAS_SLEPC -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.9 -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include -DVERSION_INFO=\"2019.2.0.dev0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -std=c++17 -o CMakeFiles/cpp.dir/dolfinx/wrappers/graph.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/dolfinx/wrappers/graph.cpp [ 53%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/io.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_PYBIND11_MPI4PY -DHAS_SLEPC -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include 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CMakeFiles/cpp.dir/dolfinx/wrappers/la.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_PYBIND11_MPI4PY -DHAS_SLEPC -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.9 -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include -DVERSION_INFO=\"2019.2.0.dev0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -std=c++17 -o CMakeFiles/cpp.dir/dolfinx/wrappers/la.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/dolfinx/wrappers/la.cpp [ 69%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/log.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_PYBIND11_MPI4PY -DHAS_SLEPC -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.9 -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include -DVERSION_INFO=\"2019.2.0.dev0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -std=c++17 -o CMakeFiles/cpp.dir/dolfinx/wrappers/log.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/dolfinx/wrappers/log.cpp [ 76%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/mesh.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_PYBIND11_MPI4PY -DHAS_SLEPC -Dcpp_EXPORTS 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-fstack-protector-strong -Wformat -Werror=format-security -isystem /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include -DVERSION_INFO=\"2019.2.0.dev0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -std=c++17 -o CMakeFiles/cpp.dir/dolfinx/wrappers/nls.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/dolfinx/wrappers/nls.cpp [ 92%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_PYBIND11_MPI4PY -DHAS_SLEPC -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.9 -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include -DVERSION_INFO=\"2019.2.0.dev0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -Wall -Werror -pedantic -flto -fno-fat-lto-objects -pthread -std=c++17 -o CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/dolfinx/wrappers/refinement.cpp [100%] Linking CXX shared library ../lib.linux-x86_64-3.9/dolfinx/cpp.cpython-39-x86_64-linux-gnu.so /usr/bin/cmake -E cmake_link_script CMakeFiles/cpp.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include -DVERSION_INFO=\"2019.2.0.dev0\" -O3 -DNDEBUG -flto -pthread -Wl,-z,relro -shared -Wl,-soname,cpp.cpython-39-x86_64-linux-gnu.so -o ../lib.linux-x86_64-3.9/dolfinx/cpp.cpython-39-x86_64-linux-gnu.so CMakeFiles/cpp.dir/dolfinx/wrappers/dolfin.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/common.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/fem.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/generation.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/geometry.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/graph.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/io.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/la.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/log.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/mesh.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/nls.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o -Wl,-rpath,/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-complex/lib:/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/lib /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.2019.2.9.99 /usr/lib/x86_64-linux-gnu/libbasix.so /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-complex/lib/libslepc_complex.so /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/lib/libpetsc_complex.so /usr/bin/strip /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-complex/lib.linux-x86_64-3.9/dolfinx/cpp.cpython-39-x86_64-linux-gnu.so gmake[4]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-complex/temp.linux-x86_64-3.9' [100%] Built target cpp gmake[3]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-complex/temp.linux-x86_64-3.9' /usr/bin/cmake -E cmake_progress_start /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-complex/temp.linux-x86_64-3.9/CMakeFiles 0 gmake[2]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/python/build-complex/temp.linux-x86_64-3.9' running install running install_lib creating /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3 creating /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages creating /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx copying build-complex/lib.linux-x86_64-3.9/dolfinx/log.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx copying build-complex/lib.linux-x86_64-3.9/dolfinx/plot.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx copying build-complex/lib.linux-x86_64-3.9/dolfinx/__init__.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx copying build-complex/lib.linux-x86_64-3.9/dolfinx/pkgconfig.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx copying build-complex/lib.linux-x86_64-3.9/dolfinx/mesh.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx copying build-complex/lib.linux-x86_64-3.9/dolfinx/common.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx copying build-complex/lib.linux-x86_64-3.9/dolfinx/jit.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx copying build-complex/lib.linux-x86_64-3.9/dolfinx/io.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx creating /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/wrappers copying build-complex/lib.linux-x86_64-3.9/dolfinx/wrappers/__init__.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/wrappers copying build-complex/lib.linux-x86_64-3.9/dolfinx/wrappers/array.h -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/wrappers copying build-complex/lib.linux-x86_64-3.9/dolfinx/wrappers/MPICommWrapper.h -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/wrappers copying build-complex/lib.linux-x86_64-3.9/dolfinx/wrappers/caster_petsc.h -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/wrappers copying build-complex/lib.linux-x86_64-3.9/dolfinx/wrappers/caster_mpi.h -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/wrappers copying build-complex/lib.linux-x86_64-3.9/dolfinx/generation.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx creating /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/la copying build-complex/lib.linux-x86_64-3.9/dolfinx/la/__init__.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/la copying build-complex/lib.linux-x86_64-3.9/dolfinx/la/solver.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/la creating /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem copying build-complex/lib.linux-x86_64-3.9/dolfinx/fem/assemble.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem copying build-complex/lib.linux-x86_64-3.9/dolfinx/fem/__init__.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem copying build-complex/lib.linux-x86_64-3.9/dolfinx/fem/form.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem copying build-complex/lib.linux-x86_64-3.9/dolfinx/fem/dirichletbc.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem copying build-complex/lib.linux-x86_64-3.9/dolfinx/fem/coordinatemapping.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem copying build-complex/lib.linux-x86_64-3.9/dolfinx/fem/problem.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem copying build-complex/lib.linux-x86_64-3.9/dolfinx/fem/formmanipulations.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem copying build-complex/lib.linux-x86_64-3.9/dolfinx/fem/dofmap.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem copying build-complex/lib.linux-x86_64-3.9/dolfinx/fem/linearproblem.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem copying build-complex/lib.linux-x86_64-3.9/dolfinx/fem/function.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem copying build-complex/lib.linux-x86_64-3.9/dolfinx/geometry.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx copying build-complex/lib.linux-x86_64-3.9/dolfinx/cpp.cpython-39-x86_64-linux-gnu.so -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx creating /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx_utils creating /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx_utils/test copying build-complex/lib.linux-x86_64-3.9/dolfinx_utils/test/skips.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx_utils/test copying build-complex/lib.linux-x86_64-3.9/dolfinx_utils/test/fixtures.py -> /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx_utils/test byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/log.py to log.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/plot.py to plot.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/__init__.py to __init__.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/pkgconfig.py to pkgconfig.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/mesh.py to mesh.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/common.py to common.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/jit.py to jit.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/io.py to io.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/wrappers/__init__.py to __init__.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/generation.py to generation.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/la/__init__.py to __init__.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/la/solver.py to solver.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem/assemble.py to assemble.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem/__init__.py to __init__.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem/form.py to form.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem/dirichletbc.py to dirichletbc.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem/coordinatemapping.py to coordinatemapping.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem/problem.py to problem.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem/formmanipulations.py to formmanipulations.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem/dofmap.py to dofmap.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem/linearproblem.py to linearproblem.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/fem/function.py to function.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx/geometry.py to geometry.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx_utils/test/skips.py to skips.cpython-39.pyc byte-compiling /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/dolfinx_utils/test/fixtures.py to fixtures.cpython-39.pyc running install_egg_info running egg_info writing fenics_dolfinx.egg-info/PKG-INFO writing dependency_links to fenics_dolfinx.egg-info/dependency_links.txt writing requirements to fenics_dolfinx.egg-info/requires.txt writing top-level names to fenics_dolfinx.egg-info/top_level.txt reading manifest file 'fenics_dolfinx.egg-info/SOURCES.txt' writing manifest file 'fenics_dolfinx.egg-info/SOURCES.txt' Copying fenics_dolfinx.egg-info to /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/python3/dist-packages/fenics_dolfinx-2019.2.0.dev0.egg-info Skipping SOURCES.txt running install_scripts chrpath -d /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp*/usr/lib/python*/dist-packages/dolfinx/*.so sed -i "s/-D_FORTIFY_SOURCE=2//g" /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp*/usr/lib/x86_64-linux-gnu/pkgconfig/dolfinx*.pc sed -i "s|-DNDEBUG||g" /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp*/usr/lib/x86_64-linux-gnu/pkgconfig/dolfinx*.pc if [ "x" != "xno" ]; then \ case " mips64el hurd-i386 m68k sh4 " in \ *\ amd64\ *) echo "ALL tests have been disabled on amd64";; \ *) set -e; \ export CTEST_OUTPUT_ON_FAILURE=1; \ for build in real complex; do \ echo "== testing $build number build =="; \ builddir=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-${build}; \ for mytest in test/unit demo; do \ echo "running tests from $mytest for $build build"; \ test_srcdir=${builddir}/${mytest}; \ testdir=${builddir}/runtests-`basename $mytest`-${build}; \ rm -rf $testdir; mkdir $testdir; \ cd $testdir; \ PETSC_DIR=/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-${build} SLEPC_DIR=/usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-${build} cmake -DCMAKE_MODULE_PATH=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-${build}/usr/lib/x86_64-linux-gnu/cmake/dolfinx \ -DDOLFINX_DIR=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-${build}/usr/lib/x86_64-linux-gnu/cmake/dolfinx \ -DMPIEXEC_PARAMS:STRING="--oversubscribe" \ ${test_srcdir} ; \ make all VERBOSE=1; \ OMPI_ALLOW_RUN_AS_ROOT=1 OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1 make test VERBOSE=1; \ done; \ cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a; \ done; \ esac; \ fi == testing real number build == running tests from test/unit for real build -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found Boost 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer;filesystem -- Found boost_headers 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.74.0 -- Found boost_timer 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.74.0 -- [x] libboost_timer.so.1.74.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: chrono;headers -- Found boost_chrono 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_chrono-1.74.0 -- [x] libboost_chrono.so.1.74.0 -- [ ] libboost_chrono.a -- Adding boost_chrono dependencies: headers -- Found boost_filesystem 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_filesystem-1.74.0 -- [x] libboost_filesystem.so.1.74.0 -- [ ] libboost_filesystem.a -- Adding boost_filesystem dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70") found components: timer filesystem -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Checking for one of the modules 'craypetsc_real;petsc;PETSc' -- Looking for sys/types.h CMake Warning (dev) at /usr/share/cmake-3.18/Modules/CheckIncludeFile.cmake:80 (message): Policy CMP0075 is not set: Include file check macros honor CMAKE_REQUIRED_LIBRARIES. Run "cmake --help-policy CMP0075" for policy details. Use the cmake_policy command to set the policy and suppress this warning. CMAKE_REQUIRED_LIBRARIES is set to: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so For compatibility with CMake 3.11 and below this check is ignoring it. Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/CheckTypeSize.cmake:230 (check_include_file) /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx/FindPETSc.cmake:222 (check_type_size) /usr/share/cmake-3.18/Modules/CMakeFindDependencyMacro.cmake:47 (find_package) /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfig.cmake:61 (find_dependency) CMakeLists.txt:5 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - done -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- Checking for one of the modules 'crayslepc_real;slepc;SLEPc' -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: MPIEXEC_PARAMS -- Build files have been written to: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-unit-real make[2]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-unit-real' /usr/bin/cmake -S/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/test/unit -B/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-unit-real --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-unit-real/CMakeFiles /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-unit-real//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-unit-real' make -f CMakeFiles/unittests.dir/build.make CMakeFiles/unittests.dir/depend make[4]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-unit-real' cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-unit-real && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/test/unit /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/test/unit /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-unit-real /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-unit-real /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-unit-real/CMakeFiles/unittests.dir/DependInfo.cmake --color= Dependee "/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-unit-real/CMakeFiles/unittests.dir/DependInfo.cmake" is newer than depender "/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-unit-real/CMakeFiles/unittests.dir/depend.internal". Dependee "/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-unit-real/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-unit-real/CMakeFiles/unittests.dir/depend.internal". Scanning dependencies of target unittests make[4]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-unit-real' make -f CMakeFiles/unittests.dir/build.make CMakeFiles/unittests.dir/build make[4]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-unit-real' [ 14%] Building CXX object CMakeFiles/unittests.dir/main.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/test/unit/catch -isystem /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem 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-fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++17 -o CMakeFiles/unittests.dir/common/CIFailure.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/test/unit/common/CIFailure.cpp [100%] Linking CXX executable unittests /usr/bin/cmake -E cmake_link_script CMakeFiles/unittests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -pthread CMakeFiles/unittests.dir/main.cpp.o CMakeFiles/unittests.dir/common/sub_systems_manager.cpp.o CMakeFiles/unittests.dir/common/index_map.cpp.o CMakeFiles/unittests.dir/mesh/cmap.c.o CMakeFiles/unittests.dir/mesh/distributed_mesh.cpp.o CMakeFiles/unittests.dir/common/CIFailure.cpp.o -o unittests -Wl,-rpath,/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/lib /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.2019.2.9.99 /usr/lib/x86_64-linux-gnu/libbasix.so /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/lib/libpetsc_real.so make[4]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-unit-real' [100%] Built target unittests make[3]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-unit-real' /usr/bin/cmake -E cmake_progress_start /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-unit-real/CMakeFiles 0 make[2]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-unit-real' make[2]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-unit-real' Running tests... /usr/bin/ctest --force-new-ctest-process Test project /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-unit-real Start 1: unittests 1/1 Test #1: unittests ........................ Passed 0.67 sec 100% tests passed, 0 tests failed out of 1 Total Test time (real) = 0.67 sec make[2]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-unit-real' running tests from demo for real build -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found Boost 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer;filesystem -- Found boost_headers 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.74.0 -- Found boost_timer 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.74.0 -- [x] libboost_timer.so.1.74.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: chrono;headers -- Found boost_chrono 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_chrono-1.74.0 -- [x] libboost_chrono.so.1.74.0 -- [ ] libboost_chrono.a -- Adding boost_chrono dependencies: headers -- Found boost_filesystem 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_filesystem-1.74.0 -- [x] libboost_filesystem.so.1.74.0 -- [ ] libboost_filesystem.a -- Adding boost_filesystem dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70") found components: timer filesystem -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Checking for one of the modules 'craypetsc_real;petsc;PETSc' -- Looking for sys/types.h CMake Warning (dev) at /usr/share/cmake-3.18/Modules/CheckIncludeFile.cmake:80 (message): Policy CMP0075 is not set: Include file check macros honor CMAKE_REQUIRED_LIBRARIES. Run "cmake --help-policy CMP0075" for policy details. Use the cmake_policy command to set the policy and suppress this warning. CMAKE_REQUIRED_LIBRARIES is set to: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so For compatibility with CMake 3.11 and below this check is ignoring it. Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/CheckTypeSize.cmake:230 (check_include_file) /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx/FindPETSc.cmake:222 (check_type_size) /usr/share/cmake-3.18/Modules/CMakeFindDependencyMacro.cmake:47 (find_package) /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfig.cmake:61 (find_dependency) CMakeLists.txt:5 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - done -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- Checking for one of the modules 'crayslepc_real;slepc;SLEPc' -- Performing Test HAVE_NO_MULTLINE -- Performing Test HAVE_NO_MULTLINE - Success -- Configuring done -- Generating done -- Build files have been written to: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real make[2]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real' /usr/bin/cmake -S/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/demo -B/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real/CMakeFiles /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real' make -f poisson/CMakeFiles/demo_poisson.dir/build.make poisson/CMakeFiles/demo_poisson.dir/depend make[4]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real' cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/demo /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/demo/poisson /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real/poisson /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real/poisson/CMakeFiles/demo_poisson.dir/DependInfo.cmake --color= Dependee "/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real/poisson/CMakeFiles/demo_poisson.dir/DependInfo.cmake" is newer than depender "/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real/poisson/CMakeFiles/demo_poisson.dir/depend.internal". Dependee "/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real/poisson/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real/poisson/CMakeFiles/demo_poisson.dir/depend.internal". Scanning dependencies of target demo_poisson make[4]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real' make -f poisson/CMakeFiles/demo_poisson.dir/build.make poisson/CMakeFiles/demo_poisson.dir/build make[4]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real' [ 16%] Building CXX object poisson/CMakeFiles/demo_poisson.dir/main.cpp.o cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real/poisson && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -isystem /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++17 -Wno-comment -Wall -Wextra -pedantic -Werror -o CMakeFiles/demo_poisson.dir/main.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/demo/poisson/main.cpp [ 33%] Building C object poisson/CMakeFiles/demo_poisson.dir/poisson.c.o cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real/poisson && /usr/bin/cc -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -isystem /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -o CMakeFiles/demo_poisson.dir/poisson.c.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/demo/poisson/poisson.c [ 50%] Linking CXX executable demo_poisson cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real/poisson && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_poisson.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -pthread CMakeFiles/demo_poisson.dir/main.cpp.o CMakeFiles/demo_poisson.dir/poisson.c.o -o demo_poisson -Wl,-rpath,/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/lib /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.2019.2.9.99 /usr/lib/x86_64-linux-gnu/libbasix.so /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/lib/libpetsc_real.so make[4]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real' [ 50%] Built target demo_poisson make -f hyperelasticity/CMakeFiles/demo_hyperelasticity.dir/build.make hyperelasticity/CMakeFiles/demo_hyperelasticity.dir/depend make[4]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real' cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/demo /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/demo/hyperelasticity /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real/hyperelasticity /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real/hyperelasticity/CMakeFiles/demo_hyperelasticity.dir/DependInfo.cmake --color= Dependee "/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real/hyperelasticity/CMakeFiles/demo_hyperelasticity.dir/DependInfo.cmake" is newer than depender "/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real/hyperelasticity/CMakeFiles/demo_hyperelasticity.dir/depend.internal". Dependee "/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real/hyperelasticity/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real/hyperelasticity/CMakeFiles/demo_hyperelasticity.dir/depend.internal". Scanning dependencies of target demo_hyperelasticity make[4]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real' make -f hyperelasticity/CMakeFiles/demo_hyperelasticity.dir/build.make hyperelasticity/CMakeFiles/demo_hyperelasticity.dir/build make[4]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real' [ 66%] Building C object hyperelasticity/CMakeFiles/demo_hyperelasticity.dir/hyperelasticity.c.o cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real/hyperelasticity && /usr/bin/cc -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -isystem /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -o CMakeFiles/demo_hyperelasticity.dir/hyperelasticity.c.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/demo/hyperelasticity/hyperelasticity.c [ 83%] Building CXX object hyperelasticity/CMakeFiles/demo_hyperelasticity.dir/main.cpp.o cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real/hyperelasticity && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -isystem /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++17 -Wno-comment -Wall -Wextra -pedantic -Werror -o CMakeFiles/demo_hyperelasticity.dir/main.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/demo/hyperelasticity/main.cpp [100%] Linking CXX executable demo_hyperelasticity cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real/hyperelasticity && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_hyperelasticity.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -pthread CMakeFiles/demo_hyperelasticity.dir/hyperelasticity.c.o CMakeFiles/demo_hyperelasticity.dir/main.cpp.o -o demo_hyperelasticity -Wl,-rpath,/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/lib /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.2019.2.9.99 /usr/lib/x86_64-linux-gnu/libbasix.so /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/lib/libpetsc_real.so make[4]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real' [100%] Built target demo_hyperelasticity make[3]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real' /usr/bin/cmake -E cmake_progress_start /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real/CMakeFiles 0 make[2]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real' make[2]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real' Running tests... /usr/bin/ctest --force-new-ctest-process Test project /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real Start 1: demo_poisson_mpi_2 1/6 Test #1: demo_poisson_mpi_2 ............... Passed 0.75 sec Start 2: demo_poisson_mpi_3 2/6 Test #2: demo_poisson_mpi_3 ............... Passed 0.93 sec Start 3: demo_poisson_serial 3/6 Test #3: demo_poisson_serial .............. Passed 0.79 sec Start 4: demo_hyperelasticity_mpi_2 4/6 Test #4: demo_hyperelasticity_mpi_2 ....... Passed 6.76 sec Start 5: demo_hyperelasticity_mpi_3 5/6 Test #5: demo_hyperelasticity_mpi_3 ....... Passed 10.21 sec Start 6: demo_hyperelasticity_serial 6/6 Test #6: demo_hyperelasticity_serial ...... Passed 3.24 sec 100% tests passed, 0 tests failed out of 6 Total Test time (real) = 22.69 sec make[2]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-real/runtests-demo-real' == testing complex number build == running tests from test/unit for complex build -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found Boost 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer;filesystem -- Found boost_headers 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.74.0 -- Found boost_timer 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.74.0 -- [x] libboost_timer.so.1.74.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: chrono;headers -- Found boost_chrono 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_chrono-1.74.0 -- [x] libboost_chrono.so.1.74.0 -- [ ] libboost_chrono.a -- Adding boost_chrono dependencies: headers -- Found boost_filesystem 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_filesystem-1.74.0 -- [x] libboost_filesystem.so.1.74.0 -- [ ] libboost_filesystem.a -- Adding boost_filesystem dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70") found components: timer filesystem -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Checking for one of the modules 'craypetsc_real;petsc;PETSc' -- Looking for sys/types.h CMake Warning (dev) at /usr/share/cmake-3.18/Modules/CheckIncludeFile.cmake:80 (message): Policy CMP0075 is not set: Include file check macros honor CMAKE_REQUIRED_LIBRARIES. Run "cmake --help-policy CMP0075" for policy details. Use the cmake_policy command to set the policy and suppress this warning. CMAKE_REQUIRED_LIBRARIES is set to: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so For compatibility with CMake 3.11 and below this check is ignoring it. Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/CheckTypeSize.cmake:230 (check_include_file) /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/FindPETSc.cmake:222 (check_type_size) /usr/share/cmake-3.18/Modules/CMakeFindDependencyMacro.cmake:47 (find_package) /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfig.cmake:61 (find_dependency) CMakeLists.txt:5 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - done -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - found -- Checking for one of the modules 'crayslepc_real;slepc;SLEPc' -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: MPIEXEC_PARAMS -- Build files have been written to: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-unit-complex make[2]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-unit-complex' /usr/bin/cmake -S/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/test/unit -B/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-unit-complex --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-unit-complex/CMakeFiles /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-unit-complex//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-unit-complex' make -f CMakeFiles/unittests.dir/build.make CMakeFiles/unittests.dir/depend make[4]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-unit-complex' cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-unit-complex && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/test/unit /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/test/unit /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-unit-complex /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-unit-complex /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-unit-complex/CMakeFiles/unittests.dir/DependInfo.cmake --color= Dependee "/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-unit-complex/CMakeFiles/unittests.dir/DependInfo.cmake" is newer than depender "/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-unit-complex/CMakeFiles/unittests.dir/depend.internal". Dependee "/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-unit-complex/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-unit-complex/CMakeFiles/unittests.dir/depend.internal". Scanning dependencies of target unittests make[4]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-unit-complex' make -f CMakeFiles/unittests.dir/build.make CMakeFiles/unittests.dir/build make[4]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-unit-complex' [ 14%] Building CXX object CMakeFiles/unittests.dir/main.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/test/unit/catch -isystem /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi 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/usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++17 -o CMakeFiles/unittests.dir/common/sub_systems_manager.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/test/unit/common/sub_systems_manager.cpp [ 42%] Building CXX object CMakeFiles/unittests.dir/common/index_map.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC 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-ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++17 -o CMakeFiles/unittests.dir/mesh/distributed_mesh.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/test/unit/mesh/distributed_mesh.cpp [ 85%] Building CXX object CMakeFiles/unittests.dir/common/CIFailure.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -I/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/test/unit/catch -isystem /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++17 -o CMakeFiles/unittests.dir/common/CIFailure.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/test/unit/common/CIFailure.cpp [100%] Linking CXX executable unittests /usr/bin/cmake -E cmake_link_script CMakeFiles/unittests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -pthread CMakeFiles/unittests.dir/main.cpp.o CMakeFiles/unittests.dir/common/sub_systems_manager.cpp.o CMakeFiles/unittests.dir/common/index_map.cpp.o CMakeFiles/unittests.dir/mesh/cmap.c.o CMakeFiles/unittests.dir/mesh/distributed_mesh.cpp.o CMakeFiles/unittests.dir/common/CIFailure.cpp.o -o unittests -Wl,-rpath,/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-complex/lib:/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/lib /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.2019.2.9.99 /usr/lib/x86_64-linux-gnu/libbasix.so /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-complex/lib/libslepc_complex.so /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/lib/libpetsc_complex.so make[4]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-unit-complex' [100%] Built target unittests make[3]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-unit-complex' /usr/bin/cmake -E cmake_progress_start /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-unit-complex/CMakeFiles 0 make[2]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-unit-complex' make[2]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-unit-complex' Running tests... /usr/bin/ctest --force-new-ctest-process Test project /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-unit-complex Start 1: unittests 1/1 Test #1: unittests ........................ Passed 0.71 sec 100% tests passed, 0 tests failed out of 1 Total Test time (real) = 0.72 sec make[2]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-unit-complex' running tests from demo for complex build -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found Boost 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer;filesystem -- Found boost_headers 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.74.0 -- Found boost_timer 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.74.0 -- [x] libboost_timer.so.1.74.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: chrono;headers -- Found boost_chrono 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_chrono-1.74.0 -- [x] libboost_chrono.so.1.74.0 -- [ ] libboost_chrono.a -- Adding boost_chrono dependencies: headers -- Found boost_filesystem 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_filesystem-1.74.0 -- [x] libboost_filesystem.so.1.74.0 -- [ ] libboost_filesystem.a -- Adding boost_filesystem dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70") found components: timer filesystem -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Checking for one of the modules 'craypetsc_real;petsc;PETSc' -- Looking for sys/types.h CMake Warning (dev) at /usr/share/cmake-3.18/Modules/CheckIncludeFile.cmake:80 (message): Policy CMP0075 is not set: Include file check macros honor CMAKE_REQUIRED_LIBRARIES. Run "cmake --help-policy CMP0075" for policy details. Use the cmake_policy command to set the policy and suppress this warning. CMAKE_REQUIRED_LIBRARIES is set to: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so For compatibility with CMake 3.11 and below this check is ignoring it. Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/CheckTypeSize.cmake:230 (check_include_file) /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/FindPETSc.cmake:222 (check_type_size) /usr/share/cmake-3.18/Modules/CMakeFindDependencyMacro.cmake:47 (find_package) /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfig.cmake:61 (find_dependency) CMakeLists.txt:5 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - done -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - found -- Checking for one of the modules 'crayslepc_real;slepc;SLEPc' -- Performing Test HAVE_NO_MULTLINE -- Performing Test HAVE_NO_MULTLINE - Success -- Configuring done -- Generating done -- Build files have been written to: /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-demo-complex make[2]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-demo-complex' /usr/bin/cmake -S/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/demo -B/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-demo-complex --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-demo-complex/CMakeFiles /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-demo-complex//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-demo-complex' make -f poisson/CMakeFiles/demo_poisson.dir/build.make poisson/CMakeFiles/demo_poisson.dir/depend make[4]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-demo-complex' cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-demo-complex && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/demo /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/demo/poisson /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-demo-complex /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-demo-complex/poisson /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-demo-complex/poisson/CMakeFiles/demo_poisson.dir/DependInfo.cmake --color= Dependee "/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-demo-complex/poisson/CMakeFiles/demo_poisson.dir/DependInfo.cmake" is newer than depender "/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-demo-complex/poisson/CMakeFiles/demo_poisson.dir/depend.internal". Dependee "/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-demo-complex/poisson/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-demo-complex/poisson/CMakeFiles/demo_poisson.dir/depend.internal". Scanning dependencies of target demo_poisson make[4]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-demo-complex' make -f poisson/CMakeFiles/demo_poisson.dir/build.make poisson/CMakeFiles/demo_poisson.dir/build make[4]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-demo-complex' [ 33%] Building CXX object poisson/CMakeFiles/demo_poisson.dir/main.cpp.o cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-demo-complex/poisson && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -isystem /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -std=gnu++17 -Wno-comment -Wall -Wextra -pedantic -Werror -o CMakeFiles/demo_poisson.dir/main.cpp.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/demo/poisson/main.cpp [ 66%] Building C object poisson/CMakeFiles/demo_poisson.dir/poisson.c.o cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-demo-complex/poisson && /usr/bin/cc -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -isystem /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -o CMakeFiles/demo_poisson.dir/poisson.c.o -c /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/demo/poisson/poisson.c [100%] Linking CXX executable demo_poisson cd /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-demo-complex/poisson && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_poisson.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -pthread CMakeFiles/demo_poisson.dir/main.cpp.o CMakeFiles/demo_poisson.dir/poisson.c.o -o demo_poisson -Wl,-rpath,/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-complex/lib:/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/lib /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.2019.2.9.99 /usr/lib/x86_64-linux-gnu/libbasix.so /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-complex/lib/libslepc_complex.so /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/lib/libpetsc_complex.so make[4]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-demo-complex' [100%] Built target demo_poisson make[3]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-demo-complex' /usr/bin/cmake -E cmake_progress_start /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-demo-complex/CMakeFiles 0 make[2]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-demo-complex' make[2]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-demo-complex' Running tests... /usr/bin/ctest --force-new-ctest-process Test project /build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-demo-complex Start 1: demo_poisson_mpi_2 1/3 Test #1: demo_poisson_mpi_2 ............... Passed 0.84 sec Start 2: demo_poisson_mpi_3 2/3 Test #2: demo_poisson_mpi_3 ............... Passed 1.13 sec Start 3: demo_poisson_serial 3/3 Test #3: demo_poisson_serial .............. Passed 0.69 sec 100% tests passed, 0 tests failed out of 3 Total Test time (real) = 2.68 sec make[2]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a/obj-x86_64-linux-gnu-complex/runtests-demo-complex' make[1]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a' dh_install -a -O--buildsystem=cmake dh_installdocs -a -O--buildsystem=cmake dh_sphinxdoc -a -O--buildsystem=cmake dh_sphinxdoc: warning: Sphinx documentation not found dh_installchangelogs -a -O--buildsystem=cmake debian/rules override_dh_python3-arch make[1]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a' py3versions: no X-Python3-Version in control file, using supported versions dh_python3 -a E: dh_python3 pydist:222: more than one package name found for petsc4py dist I: dh_python3 pydist:229: Cannot find package that provides petsc4py. Please add package that provides it to Build-Depends or add "petsc4py python3-petsc4py" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. E: dh_python3 pydist:222: more than one package name found for petsc4py dist I: dh_python3 pydist:229: Cannot find package that provides petsc4py. Please add package that provides it to Build-Depends or add "petsc4py python3-petsc4py" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. dh_numpy3 -a mkdir -p debian/python3-dolfinx-real//usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/lib mv debian/python3-dolfinx-real/usr/lib/python3 debian/python3-dolfinx-real//usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/lib rm -rf debian/python3-dolfinx-real//usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/lib/python3/dist-packages/dolfinx_utils mkdir -p debian/python3-dolfinx-complex//usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/lib mv debian/python3-dolfinx-complex/usr/lib/python3 debian/python3-dolfinx-complex//usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/lib rm -rf debian/python3-dolfinx-complex//usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/lib/python3/dist-packages/dolfinx_utils make[1]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a' dh_installsystemduser -a -O--buildsystem=cmake dh_perl -a -O--buildsystem=cmake dh_link -a -O--buildsystem=cmake dh_strip_nondeterminism -a -O--buildsystem=cmake debian/rules override_dh_compress make[1]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a' py3versions: no X-Python3-Version in control file, using supported versions dh_compress -X.py -X.cpp -X.h -X.pdf -X.ufl make[1]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a' dh_fixperms -a -O--buildsystem=cmake dh_missing -a -O--buildsystem=cmake debian/rules override_dh_dwz make[1]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a' py3versions: no X-Python3-Version in control file, using supported versions dh_dwz -Xcpp.cpython make[1]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a' debian/rules override_dh_strip make[1]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a' py3versions: no X-Python3-Version in control file, using supported versions dh_strip --package=libdolfinx-real2019.2 -Xcomplex -Xpython dh_strip --package=libdolfinx-complex2019.2 -Xreal -Xpython dh_strip --package=python3-dolfinx-real make[1]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a' dh_makeshlibs -a -a -O--buildsystem=cmake debian/rules override_dh_shlibdeps make[1]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a' py3versions: no X-Python3-Version in control file, using supported versions dh_shlibdeps --dpkg-shlibdeps-params=--ignore-missing-info dpkg-shlibdeps: warning: debian/python3-dolfinx-real/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/lib/python3/dist-packages/dolfinx/cpp.cpython-39-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyDict_New: it's probably a plugin dpkg-shlibdeps: warning: 132 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-dolfinx-complex/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-complex/lib/python3/dist-packages/dolfinx/cpp.cpython-39-x86_64-linux-gnu.so contains an unresolvable reference to symbol PyExc_IndexError: it's probably a plugin dpkg-shlibdeps: warning: 135 other similar warnings have been skipped (use -v to see them all) make[1]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a' dh_installdeb -a -O--buildsystem=cmake debian/rules override_dh_gencontrol make[1]: Entering directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a' py3versions: no X-Python3-Version in control file, using supported versions echo "python3-petsc4py-real:Depends=python3-petsc4py, python3-slepc4py, python3-petsc4py-real (>= 3.14), python3-petsc4py-real (<< 3.15), python3-slepc4py-real (>= 3.14), python3-slepc4py-real (<< 3.15)" >> debian/python3-dolfinx-real.substvars echo "python3-petsc4py-complex:Depends=python3-petsc4py, python3-slepc4py, python3-petsc4py-complex (>= 3.14), python3-petsc4py-complex (<< 3.15), python3-slepc4py-complex (>= 3.14), python3-slepc4py-complex (<< 3.15)" >> debian/python3-dolfinx-complex.substvars echo "python-petsc4py-alt:Depends=python3-petsc4py, python3-slepc4py, python3-petsc4py-real (>= 3.14), python3-petsc4py-real (<< 3.15), python3-slepc4py-real (>= 3.14), python3-slepc4py-real (<< 3.15)" >> debian/libdolfinx-dev.substvars dh_gencontrol -- -Vpetsc:Depends="libpetsc-real3.14-dev, libslepc-real3.14-dev" -Vpetsc-complex:Depends="libpetsc-complex3.14-dev, libslepc-complex3.14-dev" -Vfenics:Upstream-Version=2019.2.0~git20210116 -Vfenics:Next-Upstream-Version=2019.3~ \ -Vpybind11:Upstream-Version=2.6 -Vpybind11:Next-Upstream-Version=3 dpkg-gencontrol: warning: package python3-dolfinx-complex: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-dolfinx-complex: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-real-dev: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-real2019.2: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package python3-dolfinx-real: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-dolfinx-real: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-complex-dev: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-real2019.2: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-complex2019.2: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-complex2019.2: substitution variable ${python3:Depends} unused, but is defined make[1]: Leaving directory '/build/dolfinx-8EH3C0/dolfinx-2019.2.0-git20210130.c14cb0a' dh_md5sums -a -O--buildsystem=cmake dh_builddeb -a -O--buildsystem=cmake dpkg-deb: building package 'libdolfinx-real-dev' in '../libdolfinx-real-dev_2019.2.0~git20210130.c14cb0a-5_amd64.deb'. dpkg-deb: building package 'libdolfinx-real2019.2-dbgsym' in '../libdolfinx-real2019.2-dbgsym_2019.2.0~git20210130.c14cb0a-5_amd64.deb'. dpkg-deb: building package 'python3-dolfinx' in '../python3-dolfinx_2019.2.0~git20210130.c14cb0a-5_amd64.deb'. dpkg-deb: building package 'python3-dolfinx-real' in '../python3-dolfinx-real_2019.2.0~git20210130.c14cb0a-5_amd64.deb'. dpkg-deb: building package 'libdolfinx-complex-dev' in '../libdolfinx-complex-dev_2019.2.0~git20210130.c14cb0a-5_amd64.deb'. dpkg-deb: building package 'libdolfinx-real2019.2' in '../libdolfinx-real2019.2_2019.2.0~git20210130.c14cb0a-5_amd64.deb'. dpkg-deb: building package 'python3-dolfinx-complex' in '../python3-dolfinx-complex_2019.2.0~git20210130.c14cb0a-5_amd64.deb'. dpkg-deb: building package 'libdolfinx-complex2019.2' in '../libdolfinx-complex2019.2_2019.2.0~git20210130.c14cb0a-5_amd64.deb'. dpkg-deb: building package 'libdolfinx-complex2019.2-dbgsym' in '../libdolfinx-complex2019.2-dbgsym_2019.2.0~git20210130.c14cb0a-5_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../dolfinx_2019.2.0~git20210130.c14cb0a-5_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/dolfinx-8EH3C0 /tmp/dolfinx-2019.2.0~git20210130.c14cb0a-5pslvopp1 I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.2qjoLw21Cx... I: success in 3728.3479 seconds md5: libdolfinx-complex-dev_2019.2.0~git20210130.c14cb0a-5_amd64.deb: OK md5: libdolfinx-complex2019.2-dbgsym_2019.2.0~git20210130.c14cb0a-5_amd64.deb: OK md5: libdolfinx-complex2019.2_2019.2.0~git20210130.c14cb0a-5_amd64.deb: OK md5: libdolfinx-real-dev_2019.2.0~git20210130.c14cb0a-5_amd64.deb: OK md5: libdolfinx-real2019.2-dbgsym_2019.2.0~git20210130.c14cb0a-5_amd64.deb: OK md5: libdolfinx-real2019.2_2019.2.0~git20210130.c14cb0a-5_amd64.deb: OK md5: Value of 'md5' differs for python3-dolfinx-complex_2019.2.0~git20210130.c14cb0a-5_amd64.deb md5: Size differs for python3-dolfinx-complex_2019.2.0~git20210130.c14cb0a-5_amd64.deb md5: Value of 'md5' differs for python3-dolfinx-real_2019.2.0~git20210130.c14cb0a-5_amd64.deb md5: Size differs for python3-dolfinx-real_2019.2.0~git20210130.c14cb0a-5_amd64.deb md5: python3-dolfinx_2019.2.0~git20210130.c14cb0a-5_amd64.deb: OK sha1: libdolfinx-complex-dev_2019.2.0~git20210130.c14cb0a-5_amd64.deb: OK sha1: libdolfinx-complex2019.2-dbgsym_2019.2.0~git20210130.c14cb0a-5_amd64.deb: OK sha1: libdolfinx-complex2019.2_2019.2.0~git20210130.c14cb0a-5_amd64.deb: OK sha1: libdolfinx-real-dev_2019.2.0~git20210130.c14cb0a-5_amd64.deb: OK sha1: libdolfinx-real2019.2-dbgsym_2019.2.0~git20210130.c14cb0a-5_amd64.deb: OK sha1: libdolfinx-real2019.2_2019.2.0~git20210130.c14cb0a-5_amd64.deb: OK sha1: Value of 'sha1' differs for python3-dolfinx-complex_2019.2.0~git20210130.c14cb0a-5_amd64.deb sha1: Size differs for python3-dolfinx-complex_2019.2.0~git20210130.c14cb0a-5_amd64.deb sha1: Value of 'sha1' differs for python3-dolfinx-real_2019.2.0~git20210130.c14cb0a-5_amd64.deb sha1: Size differs for python3-dolfinx-real_2019.2.0~git20210130.c14cb0a-5_amd64.deb sha1: python3-dolfinx_2019.2.0~git20210130.c14cb0a-5_amd64.deb: OK sha256: libdolfinx-complex-dev_2019.2.0~git20210130.c14cb0a-5_amd64.deb: OK sha256: libdolfinx-complex2019.2-dbgsym_2019.2.0~git20210130.c14cb0a-5_amd64.deb: OK sha256: libdolfinx-complex2019.2_2019.2.0~git20210130.c14cb0a-5_amd64.deb: OK sha256: libdolfinx-real-dev_2019.2.0~git20210130.c14cb0a-5_amd64.deb: OK sha256: libdolfinx-real2019.2-dbgsym_2019.2.0~git20210130.c14cb0a-5_amd64.deb: OK sha256: libdolfinx-real2019.2_2019.2.0~git20210130.c14cb0a-5_amd64.deb: OK sha256: Value of 'sha256' differs for python3-dolfinx-complex_2019.2.0~git20210130.c14cb0a-5_amd64.deb sha256: Size differs for python3-dolfinx-complex_2019.2.0~git20210130.c14cb0a-5_amd64.deb sha256: Value of 'sha256' differs for python3-dolfinx-real_2019.2.0~git20210130.c14cb0a-5_amd64.deb sha256: Size differs for python3-dolfinx-real_2019.2.0~git20210130.c14cb0a-5_amd64.deb sha256: python3-dolfinx_2019.2.0~git20210130.c14cb0a-5_amd64.deb: OK Checksums: FAIL diffoscope run passed diffoscope run passed