Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/d/diamond-aligner/diamond-aligner_2.0.7-1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/diamond-aligner-2.0.7-1ihfyu1ls/diamond-aligner_2.0.7-1_amd64.buildinfo Get source package info: diamond-aligner=2.0.7-1 Source URL: http://snapshot.notset.fr/mr/package/diamond-aligner/2.0.7-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-14 automake=1:1.16.3-2 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=11 base-passwd=3.5.49 bash=5.1-2 binutils=2.35.1-7 binutils-common=2.35.1-7 binutils-x86-64-linux-gnu=2.35.1-7 bsdextrautils=2.36.1-7 bsdutils=1:2.36.1-7 build-essential=12.9 bzip2=1.0.8-4 cmake=3.18.4-2 cmake-data=3.18.4-2 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.2.1-6 dash=0.5.11+git20200708+dd9ef66-5 debconf=1.5.74 debhelper=13.3.3 debianutils=4.11.2 dh-autoreconf=20 dh-strip-nondeterminism=1.11.0-1 diffutils=1:3.7-5 dpkg=1.20.7.1 dpkg-dev=1.20.7.1 dwz=0.13+20210201-1 file=1:5.39-3 findutils=4.8.0-1 g++=4:10.2.1-1 g++-10=10.2.1-6 gcc=4:10.2.1-1 gcc-10=10.2.1-6 gcc-10-base=10.2.1-6 gettext=0.21-4 gettext-base=0.21-4 grep=3.6-1 groff-base=1.22.4-6 gzip=1.10-2 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-10 libarchive-zip-perl=1.68-1 libarchive13=3.4.3-2 libasan6=10.2.1-6 libatomic1=10.2.1-6 libattr1=1:2.4.48-6 libaudit-common=1:3.0-2 libaudit1=1:3.0-2 libbinutils=2.35.1-7 libblkid1=2.36.1-7 libbrotli1=1.0.9-2+b2 libbz2-1.0=1.0.8-4 libc-bin=2.31-9 libc-dev-bin=2.31-9 libc6=2.31-9 libc6-dev=2.31-9 libcap-ng0=0.7.9-2.2+b1 libcc1-0=10.2.1-6 libcom-err2=1.46.1-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-7 libctf0=2.35.1-7 libcurl4=7.74.0-1.1 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.256 libdebhelper-perl=13.3.3 libdpkg-perl=1.20.7.1 libelf1=0.183-1 libexpat1=2.2.10-1 libffi7=3.3-5 libfile-stripnondeterminism-perl=1.11.0-1 libgcc-10-dev=10.2.1-6 libgcc-s1=10.2.1-6 libgcrypt20=1.8.7-3 libgdbm-compat4=1.19-2 libgdbm6=1.19-2 libgmp10=2:6.2.1+dfsg-1 libgnutls30=3.7.0-7 libgomp1=10.2.1-6 libgpg-error0=1.38-2 libgssapi-krb5-2=1.18.3-4 libhogweed6=3.7-2 libicu67=67.1-6 libidn2-0=2.3.0-5 libisl23=0.23-1 libitm1=10.2.1-6 libjsoncpp24=1.9.4-4 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 libldap-2.4-2=2.4.57+dfsg-2 liblsan0=10.2.1-6 liblz4-1=1.9.3-1 liblzma5=5.2.5-1.0 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmount1=2.36.1-7 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libncurses6=6.2+20201114-2 libncursesw6=6.2+20201114-2 libnettle8=3.7-2 libnghttp2-14=1.43.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libp11-kit0=0.23.22-1 libpam-modules=1.4.0-4 libpam-modules-bin=1.4.0-4 libpam-runtime=1.4.0-4 libpam0g=1.4.0-4 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.1-2 libpipeline1=1.5.3-1 libprocps8=2:3.3.17-3 libpsl5=0.21.0-1.2 libquadmath0=10.2.1-6 librhash0=1.4.1-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg-2.1 libsasl2-modules-db=2.1.27+dfsg-2.1 libseccomp2=2.5.1-1 libselinux1=3.1-3 libsigsegv2=2.13-1 libsmartcols1=2.36.1-7 libssh2-1=1.9.0-2 libssl1.1=1.1.1i-3 libstdc++-10-dev=10.2.1-6 libstdc++6=10.2.1-6 libsub-override-perl=0.09-2 libsystemd0=247.3-1 libtasn1-6=4.16.0-2 libtinfo6=6.2+20201114-2 libtirpc-common=1.3.1-1 libtirpc-dev=1.3.1-1 libtirpc3=1.3.1-1 libtool=2.4.6-15 libtsan0=10.2.1-6 libubsan1=10.2.1-6 libuchardet0=0.0.7-1 libudev1=247.3-1 libunistring2=0.9.10-4 libuuid1=2.36.1-7 libuv1=1.40.0-1 libxml2=2.9.10+dfsg-6.3+b1 libzstd1=1.4.8+dfsg-1 linux-libc-dev=5.10.13-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4 man-db=2.9.4-1 mawk=1.3.4.20200120-2 ncurses-base=6.2+20201114-2 ncurses-bin=6.2+20201114-2 patch=2.7.6-7 perl=5.32.1-2 perl-base=5.32.1-2 perl-modules-5.32=5.32.1-2 po-debconf=1.0.21+nmu1 procps=2:3.3.17-3 sed=4.7-1 sensible-utils=0.0.14 sysvinit-utils=2.96-5 tar=1.33+dfsg-1 util-linux=2.36.1-7 xz-utils=5.2.5-1.0 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210215T083036Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d diamond-aligner=2.0.7-1 && mkdir -p /build/diamond-aligner-1qqZ8z && dpkg-source --no-check -x /*.dsc /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7 && chown -R builduser:builduser /build/diamond-aligner-1qqZ8z" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1613377750" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/diamond-aligner-1qqZ8z /tmp/diamond-aligner-2.0.7-1ihfyu1ls bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20210215T083036Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.Wc0JKV4pZI as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.Wc0JKV4pZI Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-7). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210215T083036Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210215T083036Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (852 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4662 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-9) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210215T083036Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.Wc0JKV4pZI Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20210215T083036Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 19s (1162 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.Wc0JKV4pZI I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d diamond-aligner=2.0.7-1 && mkdir -p /build/diamond-aligner-1qqZ8z && dpkg-source --no-check -x /*.dsc /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7 && chown -R builduser:builduser /build/diamond-aligner-1qqZ8z"' exec /tmp/mmdebstrap.Wc0JKV4pZI Reading package lists... NOTICE: 'diamond-aligner' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/diamond-aligner.git Please use: git clone https://salsa.debian.org/med-team/diamond-aligner.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1149 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main diamond-aligner 2.0.7-1 (dsc) [2147 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main diamond-aligner 2.0.7-1 (tar) [1020 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main diamond-aligner 2.0.7-1 (diff) [127 kB] Fetched 1149 kB in 1s (1088 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'diamond-aligner_2.0.7-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting diamond-aligner in /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7 dpkg-source: info: unpacking diamond-aligner_2.0.7.orig.tar.xz dpkg-source: info: unpacking diamond-aligner_2.0.7-1.debian.tar.xz I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1613377750" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.Wc0JKV4pZI dpkg-buildpackage: info: source package diamond-aligner dpkg-buildpackage: info: source version 2.0.7-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7' dh_auto_configure -- cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7' dh_auto_build -a cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7 -B/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu/CMakeFiles /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu' make -f CMakeFiles/arch_avx2.dir/build.make CMakeFiles/arch_avx2.dir/depend make[3]: Entering directory '/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu' make -f CMakeFiles/arch_sse4_1.dir/build.make CMakeFiles/arch_sse4_1.dir/depend cd /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7 /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7 /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu/CMakeFiles/arch_avx2.dir/DependInfo.cmake --color= make -f CMakeFiles/arch_generic.dir/build.make CMakeFiles/arch_generic.dir/depend make[3]: Entering directory '/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu' cd /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7 /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7 /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu/CMakeFiles/arch_generic.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu' cd /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7 /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7 /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu/CMakeFiles/arch_sse4_1.dir/DependInfo.cmake --color= Dependee "/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu/CMakeFiles/arch_sse4_1.dir/DependInfo.cmake" is newer than depender "/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu/CMakeFiles/arch_sse4_1.dir/depend.internal". Dependee "/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu/CMakeFiles/arch_sse4_1.dir/depend.internal". Dependee "/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu/CMakeFiles/arch_avx2.dir/DependInfo.cmake" is newer than depender "/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu/CMakeFiles/arch_avx2.dir/depend.internal". Dependee "/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu/CMakeFiles/arch_avx2.dir/depend.internal". Dependee "/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu/CMakeFiles/arch_generic.dir/DependInfo.cmake" is newer than depender "/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu/CMakeFiles/arch_generic.dir/depend.internal". Dependee "/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu/CMakeFiles/arch_generic.dir/depend.internal". Scanning dependencies of target arch_generic make[3]: Leaving directory '/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu' make -f CMakeFiles/arch_generic.dir/build.make CMakeFiles/arch_generic.dir/build Scanning dependencies of target arch_avx2 Scanning dependencies of target arch_sse4_1 make[3]: Leaving directory '/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu' make -f CMakeFiles/arch_avx2.dir/build.make CMakeFiles/arch_avx2.dir/build make[3]: Entering directory '/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu' make -f CMakeFiles/arch_sse4_1.dir/build.make CMakeFiles/arch_sse4_1.dir/build make[3]: Entering directory '/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu' [ 1%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/swipe/swipe.cpp.o [ 1%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/swipe/banded_3frame_swipe.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/lib -g -O2 -ffile-prefix-map=/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -std=gnu++11 -o CMakeFiles/arch_generic.dir/src/dp/swipe/banded_3frame_swipe.cpp.o -c /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/dp/swipe/banded_3frame_swipe.cpp /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND 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/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/lib -g -O2 -ffile-prefix-map=/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -DDISPATCH_ARCH=ARCH_SSE4_1 -DARCH_ID=1 -mssse3 -mpopcnt -msse4.1 -DEigen=Eigen_SSE4_1 -std=gnu++11 -o CMakeFiles/arch_sse4_1.dir/src/dp/swipe/swipe.cpp.o -c /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/dp/swipe/swipe.cpp [ 5%] Building CXX object CMakeFiles/arch_generic.dir/src/search/stage2.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/lib -g -O2 -ffile-prefix-map=/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -std=gnu++11 -o CMakeFiles/arch_generic.dir/src/search/stage2.cpp.o -c /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/search/stage2.cpp [ 5%] Building CXX object CMakeFiles/arch_avx2.dir/src/dp/swipe/banded_swipe.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/lib -g -O2 -ffile-prefix-map=/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -DDISPATCH_ARCH=ARCH_AVX2 -DARCH_ID=2 -mssse3 -mpopcnt -msse4.1 -msse4.2 -mavx -mavx2 -DEigen=Eigen_AVX2 -std=gnu++11 -o CMakeFiles/arch_avx2.dir/src/dp/swipe/banded_swipe.cpp.o -c /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/dp/swipe/banded_swipe.cpp [ 6%] Building CXX object CMakeFiles/arch_sse4_1.dir/src/dp/swipe/banded_swipe.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/lib -g -O2 -ffile-prefix-map=/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized 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CMakeFiles/arch_generic.dir/src/dp/swipe/swipe_wrapper.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/lib -g -O2 -ffile-prefix-map=/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -std=gnu++11 -o CMakeFiles/arch_generic.dir/src/dp/swipe/swipe_wrapper.cpp.o -c /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/dp/swipe/swipe_wrapper.cpp [ 8%] Building CXX object CMakeFiles/arch_sse4_1.dir/src/search/stage2.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/lib -g -O2 -ffile-prefix-map=/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -DDISPATCH_ARCH=ARCH_SSE4_1 -DARCH_ID=1 -mssse3 -mpopcnt -msse4.1 -DEigen=Eigen_SSE4_1 -std=gnu++11 -o CMakeFiles/arch_sse4_1.dir/src/search/stage2.cpp.o -c /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/search/stage2.cpp [ 9%] Building CXX object CMakeFiles/arch_generic.dir/src/util/tantan.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/lib -g -O2 -ffile-prefix-map=/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -std=gnu++11 -o CMakeFiles/arch_generic.dir/src/util/tantan.cpp.o -c /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/util/tantan.cpp [ 9%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/scan_diags.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/lib -g -O2 -ffile-prefix-map=/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -std=gnu++11 -o CMakeFiles/arch_generic.dir/src/dp/scan_diags.cpp.o -c /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/dp/scan_diags.cpp [ 10%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/lib -g -O2 -ffile-prefix-map=/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -std=gnu++11 -o CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o -c /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/dp/ungapped_simd.cpp [ 11%] Building CXX object CMakeFiles/arch_sse4_1.dir/src/tools/benchmark.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/lib -g -O2 -ffile-prefix-map=/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -DDISPATCH_ARCH=ARCH_SSE4_1 -DARCH_ID=1 -mssse3 -mpopcnt -msse4.1 -DEigen=Eigen_SSE4_1 -std=gnu++11 -o CMakeFiles/arch_sse4_1.dir/src/tools/benchmark.cpp.o -c /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/tools/benchmark.cpp [ 11%] Building CXX object CMakeFiles/arch_sse4_1.dir/src/dp/swipe/swipe_wrapper.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/lib -g -O2 -ffile-prefix-map=/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -DDISPATCH_ARCH=ARCH_SSE4_1 -DARCH_ID=1 -mssse3 -mpopcnt -msse4.1 -DEigen=Eigen_SSE4_1 -std=gnu++11 -o CMakeFiles/arch_sse4_1.dir/src/dp/swipe/swipe_wrapper.cpp.o -c /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/dp/swipe/swipe_wrapper.cpp [ 12%] Building CXX object CMakeFiles/arch_avx2.dir/src/search/stage1.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/lib -g -O2 -ffile-prefix-map=/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -DDISPATCH_ARCH=ARCH_AVX2 -DARCH_ID=2 -mssse3 -mpopcnt -msse4.1 -msse4.2 -mavx -mavx2 -DEigen=Eigen_AVX2 -std=gnu++11 -o CMakeFiles/arch_avx2.dir/src/search/stage1.cpp.o -c /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/search/stage1.cpp make[3]: Leaving directory '/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu' [ 12%] Built target arch_generic [ 13%] Building CXX object CMakeFiles/arch_avx2.dir/src/search/stage2.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/lib -g -O2 -ffile-prefix-map=/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -DDISPATCH_ARCH=ARCH_AVX2 -DARCH_ID=2 -mssse3 -mpopcnt -msse4.1 -msse4.2 -mavx -mavx2 -DEigen=Eigen_AVX2 -std=gnu++11 -o CMakeFiles/arch_avx2.dir/src/search/stage2.cpp.o -c /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/search/stage2.cpp [ 14%] Building CXX object CMakeFiles/arch_sse4_1.dir/src/util/tantan.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/lib -g -O2 -ffile-prefix-map=/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -DDISPATCH_ARCH=ARCH_SSE4_1 -DARCH_ID=1 -mssse3 -mpopcnt -msse4.1 -DEigen=Eigen_SSE4_1 -std=gnu++11 -o CMakeFiles/arch_sse4_1.dir/src/util/tantan.cpp.o -c /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/util/tantan.cpp [ 15%] Building CXX object CMakeFiles/arch_sse4_1.dir/src/dp/scan_diags.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/lib -g -O2 -ffile-prefix-map=/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -DDISPATCH_ARCH=ARCH_SSE4_1 -DARCH_ID=1 -mssse3 -mpopcnt -msse4.1 -DEigen=Eigen_SSE4_1 -std=gnu++11 -o CMakeFiles/arch_sse4_1.dir/src/dp/scan_diags.cpp.o -c /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/dp/scan_diags.cpp [ 15%] Building CXX object CMakeFiles/arch_avx2.dir/src/tools/benchmark.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/lib -g -O2 -ffile-prefix-map=/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -DDISPATCH_ARCH=ARCH_AVX2 -DARCH_ID=2 -mssse3 -mpopcnt -msse4.1 -msse4.2 -mavx -mavx2 -DEigen=Eigen_AVX2 -std=gnu++11 -o CMakeFiles/arch_avx2.dir/src/tools/benchmark.cpp.o -c /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/tools/benchmark.cpp [ 15%] Building CXX object CMakeFiles/arch_sse4_1.dir/src/dp/ungapped_simd.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/lib -g -O2 -ffile-prefix-map=/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -DDISPATCH_ARCH=ARCH_SSE4_1 -DARCH_ID=1 -mssse3 -mpopcnt -msse4.1 -DEigen=Eigen_SSE4_1 -std=gnu++11 -o CMakeFiles/arch_sse4_1.dir/src/dp/ungapped_simd.cpp.o -c /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/dp/ungapped_simd.cpp [ 16%] Building CXX object CMakeFiles/arch_avx2.dir/src/dp/swipe/swipe_wrapper.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/lib -g -O2 -ffile-prefix-map=/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -DDISPATCH_ARCH=ARCH_AVX2 -DARCH_ID=2 -mssse3 -mpopcnt -msse4.1 -msse4.2 -mavx -mavx2 -DEigen=Eigen_AVX2 -std=gnu++11 -o CMakeFiles/arch_avx2.dir/src/dp/swipe/swipe_wrapper.cpp.o -c /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/dp/swipe/swipe_wrapper.cpp [ 17%] Building CXX object CMakeFiles/arch_avx2.dir/src/util/tantan.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/lib -g -O2 -ffile-prefix-map=/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -DDISPATCH_ARCH=ARCH_AVX2 -DARCH_ID=2 -mssse3 -mpopcnt -msse4.1 -msse4.2 -mavx -mavx2 -DEigen=Eigen_AVX2 -std=gnu++11 -o CMakeFiles/arch_avx2.dir/src/util/tantan.cpp.o -c /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/util/tantan.cpp make[3]: Leaving directory '/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu' [ 17%] Built target arch_sse4_1 [ 17%] Building CXX object CMakeFiles/arch_avx2.dir/src/dp/scan_diags.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/lib -g -O2 -ffile-prefix-map=/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -DDISPATCH_ARCH=ARCH_AVX2 -DARCH_ID=2 -mssse3 -mpopcnt -msse4.1 -msse4.2 -mavx -mavx2 -DEigen=Eigen_AVX2 -std=gnu++11 -o CMakeFiles/arch_avx2.dir/src/dp/scan_diags.cpp.o -c /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/src/dp/scan_diags.cpp [ 18%] Building CXX object CMakeFiles/arch_avx2.dir/src/dp/ungapped_simd.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND 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/usr/bin/cmake -E cmake_progress_start /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7' cd debian/tests && PATH=/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu:/usr/sbin:/usr/bin:/sbin:/bin:/usr/sbin:/usr/bin:/sbin:/bin sh diamond-calls + mktemp -d + TESTDIR=/tmp/tmp.hLYtItsnaH + diamond blastp --threads 1 --db test/C.faa.diamond --query test/E.faa --out /tmp/tmp.hLYtItsnaH/E.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive + diamond blastp --threads 1 --db test/E.faa.diamond --query test/C.faa --out /tmp/tmp.hLYtItsnaH/C.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive + diamond blastp --threads 1 --db test/C.faa.diamond --query test/L.faa --out /tmp/tmp.hLYtItsnaH/L.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive + diamond blastp --threads 1 --db test/L.faa.diamond --query test/C.faa --out /tmp/tmp.hLYtItsnaH/C.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive + diamond blastp --threads 1 --db test/C.faa.diamond --query test/M.faa --out /tmp/tmp.hLYtItsnaH/M.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive + diamond blastp --threads 1 --db test/C.faa.diamond --query test/C2.faa --out /tmp/tmp.hLYtItsnaH/C2.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive + diamond blastp --threads 1 --db test/E.faa.diamond --query test/L.faa --out /tmp/tmp.hLYtItsnaH/L.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive + diamond blastp --threads 1 --db test/E.faa.diamond --query test/M.faa --out /tmp/tmp.hLYtItsnaH/M.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/C.faa --out /tmp/tmp.hLYtItsnaH/C.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive + diamond blastp --threads 1 --db test/M.faa.diamond --query test/C.faa --out /tmp/tmp.hLYtItsnaH/C.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive + diamond blastp --threads 1 --db test/E.faa.diamond --query test/C2.faa --out /tmp/tmp.hLYtItsnaH/C2.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/E.faa --out /tmp/tmp.hLYtItsnaH/E.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive + diamond blastp --threads 1 --db test/L.faa.diamond --query test/M.faa --out /tmp/tmp.hLYtItsnaH/M.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive + diamond blastp --threads 1 --db test/L.faa.diamond --query test/C2.faa --out /tmp/tmp.hLYtItsnaH/C2.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/L.faa --out /tmp/tmp.hLYtItsnaH/L.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive + diamond blastp --threads 1 --db test/L.faa.diamond --query test/E.faa --out /tmp/tmp.hLYtItsnaH/E.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive + diamond blastp --threads 1 --db test/M.faa.diamond --query test/E.faa --out /tmp/tmp.hLYtItsnaH/E.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive + diamond blastp --threads 1 --db test/M.faa.diamond --query test/C2.faa --out /tmp/tmp.hLYtItsnaH/C2.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/M.faa --out /tmp/tmp.hLYtItsnaH/M.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive + diamond blastp --threads 1 --db test/M.faa.diamond --query test/L.faa --out /tmp/tmp.hLYtItsnaH/L.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive + rm -rf /tmp/tmp.hLYtItsnaH make[1]: Leaving directory '/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a cd obj-x86_64-linux-gnu && make -j4 install DESTDIR=/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/debian/diamond-aligner AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7 -B/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/debian/diamond-aligner/usr/bin/diamond make[1]: Leaving directory '/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7/obj-x86_64-linux-gnu' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7' dh_compress --exclude=.pdf make[1]: Leaving directory '/build/diamond-aligner-1qqZ8z/diamond-aligner-2.0.7' dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'diamond-aligner' in '../diamond-aligner_2.0.7-1_amd64.deb'. dpkg-deb: building package 'diamond-aligner-dbgsym' in '../diamond-aligner-dbgsym_2.0.7-1_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../diamond-aligner_2.0.7-1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/diamond-aligner-1qqZ8z /tmp/diamond-aligner-2.0.7-1ihfyu1ls I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.Wc0JKV4pZI... I: success in 1685.1152 seconds md5: diamond-aligner-dbgsym_2.0.7-1_amd64.deb: OK md5: diamond-aligner_2.0.7-1_amd64.deb: OK sha1: diamond-aligner-dbgsym_2.0.7-1_amd64.deb: OK sha1: diamond-aligner_2.0.7-1_amd64.deb: OK sha256: diamond-aligner-dbgsym_2.0.7-1_amd64.deb: OK sha256: diamond-aligner_2.0.7-1_amd64.deb: OK Checksums: OK