Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/d/diamond-aligner/diamond-aligner_2.0.14-1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/diamond-aligner-2.0.14-14r_rz6oc/diamond-aligner_2.0.14-1_amd64.buildinfo Get source package info: diamond-aligner=2.0.14-1 Source URL: http://snapshot.notset.fr/mr/package/diamond-aligner/2.0.14-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.5-1.1 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.52 bash=5.1-6 binutils=2.37.50.20220106-2 binutils-common=2.37.50.20220106-2 binutils-x86-64-linux-gnu=2.37.50.20220106-2 bsdextrautils=2.37.2-6 bsdutils=1:2.37.2-6 build-essential=12.9 bzip2=1.0.8-5 cmake=3.22.1-1+b1 cmake-data=3.22.1-1 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-13 dash=0.5.11+git20210903+057cd650a4ed-3 debconf=1.5.79 debhelper=13.6 debianutils=5.5-1 dh-autoreconf=20 dh-elpa-helper=2.0.10 dh-strip-nondeterminism=1.13.0-1 diffutils=1:3.7-5 dpkg=1.21.1 dpkg-dev=1.21.1 dwz=0.14-1 emacsen-common=3.0.4 file=1:5.41-2 findutils=4.8.0-1 g++=4:11.2.0-2 g++-11=11.2.0-13 gcc=4:11.2.0-2 gcc-11=11.2.0-13 gcc-11-base=11.2.0-13 gettext=0.21-4 gettext-base=0.21-4 grep=3.7-1 groff-base=1.22.4-8 gzip=1.10-4 hostname=3.23 init-system-helpers=1.61 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libarchive-zip-perl=1.68-1 libarchive13=3.5.2-1 libasan6=11.2.0-13 libatomic1=11.2.0-13 libattr1=1:2.5.1-1 libaudit-common=1:3.0.6-1 libaudit1=1:3.0.6-1+b1 libbinutils=2.37.50.20220106-2 libblkid1=2.37.2-6 libbrotli1=1.0.9-2+b3 libbz2-1.0=1.0.8-5 libc-bin=2.33-2 libc-dev-bin=2.33-2 libc6=2.33-2 libc6-dev=2.33-2 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcc1-0=11.2.0-13 libcom-err2=1.46.5-2 libcrypt-dev=1:4.4.27-1 libcrypt1=1:4.4.27-1 libctf-nobfd0=2.37.50.20220106-2 libctf0=2.37.50.20220106-2 libcurl4=7.81.0-1 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.261 libdebhelper-perl=13.6 libdpkg-perl=1.21.1 libelf1=0.186-1 libexpat1=2.4.2-1 libffi8=3.4.2-3 libfile-stripnondeterminism-perl=1.13.0-1 libgcc-11-dev=11.2.0-13 libgcc-s1=11.2.0-13 libgcrypt20=1.9.4-5 libgdbm-compat4=1.22-1 libgdbm6=1.22-1 libgmp10=2:6.2.1+dfsg-3 libgnutls30=3.7.2-5 libgomp1=11.2.0-13 libgpg-error0=1.43-1 libgssapi-krb5-2=1.18.3-7 libhogweed6=3.7.3-1 libicu67=67.1-7 libidn2-0=2.3.2-2 libisl23=0.24-2 libitm1=11.2.0-13 libjsoncpp25=1.9.5-2 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 libldap-2.4-2=2.4.59+dfsg-1 liblsan0=11.2.0-13 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.41-2 libmagic1=1:5.41-2 libmount1=2.37.2-6 libmpc3=1.2.1-1 libmpfr6=4.1.0-3 libncurses6=6.3-1 libncursesw6=6.3-1 libnettle8=3.7.3-1 libnghttp2-14=1.43.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libp11-kit0=0.24.0-6 libpam-modules=1.4.0-11 libpam-modules-bin=1.4.0-11 libpam-runtime=1.4.0-11 libpam0g=1.4.0-11 libpcre2-8-0=10.39-3 libpcre3=2:8.39-13 libperl5.32=5.32.1-6 libpipeline1=1.5.5-1 libprocps8=2:3.3.17-6 libpsl5=0.21.0-1.2 libquadmath0=11.2.0-13 librhash0=1.4.2-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg2-3 libsasl2-modules-db=2.1.27+dfsg2-3 libseccomp2=2.5.3-2 libselinux1=3.3-1+b1 libsigsegv2=2.13-1 libsmartcols1=2.37.2-6 libssh2-1=1.10.0-2 libssl1.1=1.1.1m-1 libstdc++-11-dev=11.2.0-13 libstdc++6=11.2.0-13 libsub-override-perl=0.09-2 libsystemd0=250.2-1 libtasn1-6=4.18.0-4 libtinfo6=6.3-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtsan0=11.2.0-13 libubsan1=11.2.0-13 libuchardet0=0.0.7-1 libudev1=250.2-1 libunistring2=0.9.10-6 libuuid1=2.37.2-6 libuv1=1.43.0-1 libxml2=2.9.12+dfsg-5+b1 libzstd1=1.4.8+dfsg-3 linux-libc-dev=5.15.5-2 login=1:4.8.1-2 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-4 mawk=1.3.4.20200120-2 ncurses-base=6.3-1 ncurses-bin=6.3-1 patch=2.7.6-7 perl=5.32.1-6 perl-base=5.32.1-6 perl-modules-5.32=5.32.1-6 po-debconf=1.0.21+nmu1 procps=2:3.3.17-6 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.01-1 tar=1.34+dfsg-1 util-linux=2.37.2-6 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220119T025427Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220119T025427Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220307T090754Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20220112T215005Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d diamond-aligner=2.0.14-1 && mkdir -p /build/diamond-aligner-WsRAxp && dpkg-source --no-check -x /*.dsc /build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14 && chown -R builduser:builduser /build/diamond-aligner-WsRAxp" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1642346452" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/diamond-aligner-WsRAxp /tmp/diamond-aligner-2.0.14-14r_rz6oc bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20220112T215005Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.uCLtr80_5A as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.uCLtr80_5A Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-6). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 135 kB of archives. After this operation, 406 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20220112T215005Z unstable/main amd64 libfakeroot amd64 1.26-1.2 [48.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220112T215005Z unstable/main amd64 fakeroot amd64 1.26-1.2 [87.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 135 kB in 0s (948 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4681 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.26-1.2_amd64.deb ... Unpacking libfakeroot:amd64 (1.26-1.2) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.26-1.2_amd64.deb ... Unpacking fakeroot (1.26-1.2) ... Setting up libfakeroot:amd64 (1.26-1.2) ... Setting up fakeroot (1.26-1.2) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-2) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220119T025427Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220119T025427Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220307T090754Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20220112T215005Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.uCLtr80_5A Get:1 http://snapshot.notset.fr/archive/debian/20220119T025427Z bookworm InRelease [129 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220307T090754Z unstable InRelease [165 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20220112T215005Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20220119T025427Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220119T025427Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20220119T025427Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220119T025427Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20220119T025427Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220119T025427Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20220119T025427Z bookworm/main Sources [11.8 MB] Get:5 http://snapshot.notset.fr/archive/debian/20220119T025427Z bookworm/main amd64 Packages [11.2 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20220307T090754Z unstable/main amd64 Packages Err:6 http://snapshot.notset.fr/archive/debian/20220307T090754Z unstable/main amd64 Packages 404 Not Found [IP: 10.13.0.253 80] Ign:6 http://snapshot.notset.fr/archive/debian/20220307T090754Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20220307T090754Z unstable/main amd64 Packages [12.3 MB] Fetched 35.5 MB in 29s (1227 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.uCLtr80_5A I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d diamond-aligner=2.0.14-1 && mkdir -p /build/diamond-aligner-WsRAxp && dpkg-source --no-check -x /*.dsc /build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14 && chown -R builduser:builduser /build/diamond-aligner-WsRAxp"' exec /tmp/mmdebstrap.uCLtr80_5A Reading package lists... NOTICE: 'diamond-aligner' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/diamond-aligner.git Please use: git clone https://salsa.debian.org/med-team/diamond-aligner.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1205 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20220119T025427Z bookworm/main diamond-aligner 2.0.14-1 (dsc) [2190 B] Get:2 http://snapshot.notset.fr/archive/debian/20220119T025427Z bookworm/main diamond-aligner 2.0.14-1 (tar) [1074 kB] Get:3 http://snapshot.notset.fr/archive/debian/20220119T025427Z bookworm/main diamond-aligner 2.0.14-1 (diff) [129 kB] Fetched 1205 kB in 1s (1216 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'diamond-aligner_2.0.14-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting diamond-aligner in /build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14 dpkg-source: info: unpacking diamond-aligner_2.0.14.orig.tar.xz dpkg-source: info: unpacking diamond-aligner_2.0.14-1.debian.tar.xz I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1642346452" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.uCLtr80_5A dpkg-buildpackage: info: source package diamond-aligner dpkg-buildpackage: info: source version 2.0.14-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14' dh_auto_configure -- -DCMAKE_BUILD_TYPE=Release cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_BUILD_TYPE=Release .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 11.2.0 -- The CXX compiler identification is GNU 11.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test HAS_GNUPP14 -- Performing Test HAS_GNUPP14 - Success -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14' dh_auto_build -a cd obj-x86_64-linux-gnu && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14 -B/build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/obj-x86_64-linux-gnu/CMakeFiles /build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/obj-x86_64-linux-gnu' make -f CMakeFiles/arch_generic.dir/build.make CMakeFiles/arch_generic.dir/depend make[3]: Entering directory '/build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/obj-x86_64-linux-gnu' cd /build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14 /build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14 /build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/obj-x86_64-linux-gnu /build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/obj-x86_64-linux-gnu /build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/obj-x86_64-linux-gnu/CMakeFiles/arch_generic.dir/DependInfo.cmake --color= make -f CMakeFiles/arch_sse4_1.dir/build.make CMakeFiles/arch_sse4_1.dir/depend make -f CMakeFiles/arch_avx2.dir/build.make CMakeFiles/arch_avx2.dir/depend make[3]: Entering directory '/build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/obj-x86_64-linux-gnu' cd /build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14 /build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14 /build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/obj-x86_64-linux-gnu /build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/obj-x86_64-linux-gnu /build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/obj-x86_64-linux-gnu/CMakeFiles/arch_sse4_1.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/obj-x86_64-linux-gnu' cd /build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14 /build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14 /build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/obj-x86_64-linux-gnu /build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/obj-x86_64-linux-gnu /build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/obj-x86_64-linux-gnu/CMakeFiles/arch_avx2.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/obj-x86_64-linux-gnu' make -f CMakeFiles/arch_generic.dir/build.make CMakeFiles/arch_generic.dir/build make -f CMakeFiles/arch_avx2.dir/build.make CMakeFiles/arch_avx2.dir/build make[3]: Entering directory '/build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/obj-x86_64-linux-gnu' make -f CMakeFiles/arch_sse4_1.dir/build.make CMakeFiles/arch_sse4_1.dir/build make[3]: Entering directory '/build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/obj-x86_64-linux-gnu' [ 0%] Building CXX object CMakeFiles/arch_avx2.dir/src/dp/swipe/banded_3frame_swipe.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -I/build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/src/lib -g -O2 -ffile-prefix-map=/build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable 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/build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/src/data/seed_array.cpp: In instantiation of ‘SeedArray::SeedArray(Block&, const ShapeHistogram&, const SeedPartitionRange&, char*, const _filter*, const EnumCfg&) [with _filter = NoFilter; ShapeHistogram = std::vector >]’: /build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/src/data/seed_array.cpp:140:136: required from here /build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/src/data/seed_array.cpp:130:42: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 130 | for (size_t i = range.begin(); i < range.end(); ++i) | ~~^~~~~~~~~~~~~ /build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/src/data/seed_array.cpp: In instantiation of ‘SeedArray::SeedArray(Block&, const ShapeHistogram&, const SeedPartitionRange&, char*, const _filter*, const EnumCfg&) [with _filter = SeedSet; ShapeHistogram = std::vector >]’: /build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/src/data/seed_array.cpp:141:135: required from here /build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/src/data/seed_array.cpp:130:42: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/src/data/seed_array.cpp: In instantiation of ‘SeedArray::SeedArray(Block&, const ShapeHistogram&, const SeedPartitionRange&, char*, const _filter*, const EnumCfg&) [with _filter = HashedSeedSet; ShapeHistogram = std::vector >]’: /build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/src/data/seed_array.cpp:142:141: required from here /build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/src/data/seed_array.cpp:130:42: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] [ 48%] Building CXX object CMakeFiles/diamond.dir/src/tools/tsv_record.cpp.o 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CMakeFiles/arch_sse4_1.dir/src/util/tantan.cpp.o CMakeFiles/arch_sse4_1.dir/src/dp/scan_diags.cpp.o CMakeFiles/arch_sse4_1.dir/src/dp/ungapped_simd.cpp.o CMakeFiles/arch_avx2.dir/src/dp/swipe/banded_3frame_swipe.cpp.o CMakeFiles/arch_avx2.dir/src/search/stage2.cpp.o CMakeFiles/arch_avx2.dir/src/tools/benchmark.cpp.o CMakeFiles/arch_avx2.dir/src/dp/swipe/swipe_wrapper.cpp.o CMakeFiles/arch_avx2.dir/src/util/tantan.cpp.o CMakeFiles/arch_avx2.dir/src/dp/scan_diags.cpp.o CMakeFiles/arch_avx2.dir/src/dp/ungapped_simd.cpp.o -o diamond -lz -lpthread make[3]: Leaving directory '/build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/obj-x86_64-linux-gnu' [100%] Built target diamond make[2]: Leaving directory '/build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/obj-x86_64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/diamond-aligner/ -a cd obj-x86_64-linux-gnu && make -j10 install DESTDIR=/build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/debian/diamond-aligner AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14 -B/build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/debian/diamond-aligner/usr/bin/diamond make[1]: Leaving directory '/build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14/obj-x86_64-linux-gnu' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14' dh_compress --exclude=.pdf make[1]: Leaving directory '/build/diamond-aligner-WsRAxp/diamond-aligner-2.0.14' dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'diamond-aligner' in '../diamond-aligner_2.0.14-1_amd64.deb'. dpkg-deb: building package 'diamond-aligner-dbgsym' in '../diamond-aligner-dbgsym_2.0.14-1_amd64.deb'. dpkg-genbuildinfo --build=any -O../diamond-aligner_2.0.14-1_amd64.buildinfo dpkg-genchanges --build=any -O../diamond-aligner_2.0.14-1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/diamond-aligner-WsRAxp /tmp/diamond-aligner-2.0.14-14r_rz6oc I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.uCLtr80_5A... I: success in 981.6036 seconds md5: diamond-aligner-dbgsym_2.0.14-1_amd64.deb: OK md5: diamond-aligner_2.0.14-1_amd64.deb: OK sha1: diamond-aligner-dbgsym_2.0.14-1_amd64.deb: OK sha1: diamond-aligner_2.0.14-1_amd64.deb: OK sha256: diamond-aligner-dbgsym_2.0.14-1_amd64.deb: OK sha256: diamond-aligner_2.0.14-1_amd64.deb: OK Checksums: OK