Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/d/delly/delly_1.0.3-1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/delly-1.0.3-1o5sleza6/delly_1.0.3-1_amd64.buildinfo Get source package info: delly=1.0.3-1 Source URL: http://snapshot.notset.fr/mr/package/delly/1.0.3-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.5-1.3 autopoint=0.21-6 autotools-dev=20220109.1 base-files=12.2 base-passwd=3.5.52 bash=5.1-6 binutils=2.38-3 binutils-common=2.38-3 binutils-x86-64-linux-gnu=2.38-3 bsdextrautils=2.38-4 bsdutils=1:2.38-4 build-essential=12.9 bzip2=1.0.8-5 chrpath=0.16-2+b1 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.3.0-1 dash=0.5.11+git20210903+057cd650a4ed-8 debconf=1.5.79 debhelper=13.7.1 debianutils=5.7-0.2 dh-autoreconf=20 dh-strip-nondeterminism=1.13.0-1 diffutils=1:3.7-5 dpkg=1.21.7 dpkg-dev=1.21.7 dwz=0.14-1 file=1:5.41-4 findutils=4.9.0-3 g++=4:11.2.0-2 g++-11=11.3.0-1 gcc=4:11.2.0-2 gcc-11=11.3.0-1 gcc-11-base=11.3.0-1 gcc-12-base=12-20220428-1 gettext=0.21-6 gettext-base=0.21-6 grep=3.7-1 groff-base=1.22.4-8 gzip=1.12-1 hostname=3.23 icu-devtools=71.1-2 init-system-helpers=1.62 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libarchive-zip-perl=1.68-1 libasan6=11.3.0-1 libatomic1=12-20220428-1 libattr1=1:2.5.1-1 libaudit-common=1:3.0.7-1 libaudit1=1:3.0.7-1+b1 libbinutils=2.38-3 libblkid1=2.38-4 libboost-date-time-dev=1.74.0.3 libboost-date-time1.74-dev=1.74.0-14+b1 libboost-date-time1.74.0=1.74.0-14+b1 libboost-filesystem-dev=1.74.0.3 libboost-filesystem1.74-dev=1.74.0-14+b1 libboost-filesystem1.74.0=1.74.0-14+b1 libboost-iostreams-dev=1.74.0.3 libboost-iostreams1.74-dev=1.74.0-14+b1 libboost-iostreams1.74.0=1.74.0-14+b1 libboost-program-options-dev=1.74.0.3 libboost-program-options1.74-dev=1.74.0-14+b1 libboost-program-options1.74.0=1.74.0-14+b1 libboost-regex1.74-dev=1.74.0-14+b1 libboost-regex1.74.0=1.74.0-14+b1 libboost-serialization1.74-dev=1.74.0-14+b1 libboost-serialization1.74.0=1.74.0-14+b1 libboost-system-dev=1.74.0.3 libboost-system1.74-dev=1.74.0-14+b1 libboost-system1.74.0=1.74.0-14+b1 libboost1.74-dev=1.74.0-14+b1 libbrotli1=1.0.9-2+b3 libbz2-1.0=1.0.8-5 libbz2-dev=1.0.8-5 libc-bin=2.33-7 libc-dev-bin=2.33-7 libc6=2.33-7 libc6-dev=2.33-7 libcap-ng0=0.7.9-2.2+b2 libcap2=1:2.44-1 libcc1-0=12-20220428-1 libcom-err2=1.46.5-2 libcrypt-dev=1:4.4.27-1.1 libcrypt1=1:4.4.27-1.1 libctf-nobfd0=2.38-3 libctf0=2.38-3 libcurl3-gnutls=7.83.0-1 libcurl4-gnutls-dev=7.83.0-1 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.262 libdebhelper-perl=13.7.1 libdeflate-dev=1.10-2 libdeflate0=1.10-2 libdpkg-perl=1.21.7 libelf1=0.186-1 libffi8=3.4.2-4 libfile-stripnondeterminism-perl=1.13.0-1 libgcc-11-dev=11.3.0-1 libgcc-s1=12-20220428-1 libgcrypt20=1.10.1-2 libgdbm-compat4=1.23-1 libgdbm6=1.23-1 libgmp10=2:6.2.1+dfsg-3 libgnutls30=3.7.4-2 libgomp1=12-20220428-1 libgpg-error0=1.45-2 libgssapi-krb5-2=1.19.2-2+b1 libhogweed6=3.7.3-1 libhts-dev=1.13+ds-2 libhts3=1.13+ds-2 libhtscodecs2=1.2.1-1 libicu-dev=71.1-2 libicu71=71.1-2 libidn2-0=2.3.2-2 libisl23=0.24-2 libitm1=12-20220428-1 libk5crypto3=1.19.2-2+b1 libkeyutils1=1.6.1-3 libkrb5-3=1.19.2-2+b1 libkrb5support0=1.19.2-2+b1 libldap-2.5-0=2.5.11+dfsg-1 liblsan0=12-20220428-1 liblz4-1=1.9.3-2 liblzma-dev=5.2.5-2.1 liblzma5=5.2.5-2.1 libmagic-mgc=1:5.41-4 libmagic1=1:5.41-4 libmount1=2.38-4 libmpc3=1.2.1-2 libmpfr6=4.1.0-3 libnettle8=3.7.3-1 libnghttp2-14=1.47.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libp11-kit0=0.24.1-1 libpam-modules=1.4.0-13 libpam-modules-bin=1.4.0-13 libpam-runtime=1.4.0-13 libpam0g=1.4.0-13 libpcre2-8-0=10.40-1 libpcre3=2:8.39-14 libperl5.34=5.34.0-4 libpipeline1=1.5.6-1 libpsl5=0.21.0-1.2 libquadmath0=12-20220428-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.28+dfsg-4 libsasl2-modules-db=2.1.28+dfsg-4 libseccomp2=2.5.4-1 libselinux1=3.3-1+b2 libsigsegv2=2.14-1 libsmartcols1=2.38-4 libssh2-1=1.10.0-3 libssl1.1=1.1.1n-1 libstdc++-11-dev=11.3.0-1 libstdc++6=12-20220428-1 libsub-override-perl=0.09-2 libsystemd0=250.4-1 libtasn1-6=4.18.0-4 libtinfo6=6.3+20220423-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.7-3 libtsan0=11.3.0-1 libubsan1=12-20220428-1 libuchardet0=0.0.7-1 libudev1=250.4-1 libunistring2=1.0-1 libuuid1=2.38-4 libxml2=2.9.13+dfsg-1+b1 libzstd1=1.5.2+dfsg-1 linux-libc-dev=5.17.3-1 login=1:4.11.1+dfsg1-2 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.10.2-1 mawk=1.3.4.20200120-3+b1 ncurses-base=6.3+20220423-1 ncurses-bin=6.3+20220423-1 patch=2.7.6-7 perl=5.34.0-4 perl-base=5.34.0-4 perl-modules-5.34=5.34.0-4 po-debconf=1.0.21+nmu1 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.03-1 tar=1.34+dfsg-1 util-linux=2.38-4 util-linux-extra=2.38-4 xz-utils=5.2.5-2.1 zlib1g=1:1.2.11.dfsg-4 zlib1g-dev=1:1.2.11.dfsg-4 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220507T034236Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220507T034236Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220501T215056Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d delly=1.0.3-1 && mkdir -p /build/delly-e8BAnu && dpkg-source --no-check -x /*.dsc /build/delly-e8BAnu/delly-1.0.3 && chown -R builduser:builduser /build/delly-e8BAnu" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/delly-e8BAnu/delly-1.0.3 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1651486649" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/delly-e8BAnu /tmp/delly-1.0.3-1o5sleza6 bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20220501T215056Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.zrVGudCGQ7 as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.zrVGudCGQ7 Reading package lists... Building dependency tree... util-linux is already the newest version (2.38-4). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 135 kB of archives. After this operation, 406 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20220501T215056Z unstable/main amd64 libfakeroot amd64 1.28-1 [48.2 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220501T215056Z unstable/main amd64 fakeroot amd64 1.28-1 [87.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 135 kB in 0s (1013 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4627 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.28-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.28-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.28-1_amd64.deb ... Unpacking fakeroot (1.28-1) ... Setting up libfakeroot:amd64 (1.28-1) ... Setting up fakeroot (1.28-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-7) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220507T034236Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220507T034236Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220501T215056Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.zrVGudCGQ7 Get:1 http://snapshot.notset.fr/archive/debian/20220507T034236Z bookworm InRelease [130 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20220501T215056Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20220507T034236Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20220507T034236Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20220507T034236Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20220507T034236Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20220507T034236Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20220507T034236Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20220507T034236Z bookworm/main Sources [11.9 MB] Get:4 http://snapshot.notset.fr/archive/debian/20220507T034236Z bookworm/main amd64 Packages [11.4 MB] Fetched 23.4 MB in 20s (1183 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.zrVGudCGQ7 I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d delly=1.0.3-1 && mkdir -p /build/delly-e8BAnu && dpkg-source --no-check -x /*.dsc /build/delly-e8BAnu/delly-1.0.3 && chown -R builduser:builduser /build/delly-e8BAnu"' exec /tmp/mmdebstrap.zrVGudCGQ7 Reading package lists... NOTICE: 'delly' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/delly.git Please use: git clone https://salsa.debian.org/med-team/delly.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 108 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20220507T034236Z bookworm/main delly 1.0.3-1 (dsc) [2088 B] Get:2 http://snapshot.notset.fr/archive/debian/20220507T034236Z bookworm/main delly 1.0.3-1 (tar) [102 kB] Get:3 http://snapshot.notset.fr/archive/debian/20220507T034236Z bookworm/main delly 1.0.3-1 (diff) [4292 B] Fetched 108 kB in 0s (631 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'delly_1.0.3-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting delly in /build/delly-e8BAnu/delly-1.0.3 dpkg-source: info: unpacking delly_1.0.3.orig.tar.xz dpkg-source: info: unpacking delly_1.0.3-1.debian.tar.xz I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/delly-e8BAnu/delly-1.0.3 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1651486649" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.zrVGudCGQ7 dpkg-buildpackage: info: source package delly dpkg-buildpackage: info: source version 1.0.3-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/delly-e8BAnu/delly-1.0.3' dh_auto_clean make -j10 distclean make[2]: Entering directory '/build/delly-e8BAnu/delly-1.0.3' if [ -r src/htslib/Makefile ]; then cd src/htslib && make clean; fi rm -f .htslib src/delly .htslib.o src/delly.o .htslib rm -f src/delly make[2]: Leaving directory '/build/delly-e8BAnu/delly-1.0.3' rm -rf src/dpe src/delly bin/delly make[1]: Leaving directory '/build/delly-e8BAnu/delly-1.0.3' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/build/delly-e8BAnu/delly-1.0.3' dh_auto_build -- BUILT_PROGRAMS="src/delly src/dpe" PARALLEL=1 make -j10 "INSTALL=install --strip-program=true" "BUILT_PROGRAMS=src/delly src/dpe" PARALLEL=1 make[2]: Entering directory '/build/delly-e8BAnu/delly-1.0.3' if [ -r src/htslib/Makefile ]; then cd src/htslib && autoheader && autoconf && ./configure --disable-s3 --disable-gcs --disable-libcurl --disable-plugins && make && make lib-static && cd ../../ && touch .htslib; fi g++ -g -O2 -ffile-prefix-map=/build/delly-e8BAnu/delly-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/delly-e8BAnu/delly-1.0.3/src/htslib/ -pedantic -W -Wall -Wno-unknown-pragmas -D__STDC_LIMIT_MACROS -fno-strict-aliasing -fpermissive -fopenmp -DOPENMP -O3 -fno-tree-vectorize -DNDEBUG src/delly.cpp src/edlib.cpp -o src/delly -Wl,-z,relro -Wl,-z,now -L/build/delly-e8BAnu/delly-1.0.3/src/htslib/ -L/build/delly-e8BAnu/delly-1.0.3/src/htslib//lib -lboost_iostreams -lboost_filesystem -lboost_system -lboost_program_options -lboost_date_time -lhts -lz -llzma -lbz2 -Wl,-rpath,/build/delly-e8BAnu/delly-1.0.3/src/htslib/ g++ -g -O2 -ffile-prefix-map=/build/delly-e8BAnu/delly-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/delly-e8BAnu/delly-1.0.3/src/htslib/ -pedantic -W -Wall -Wno-unknown-pragmas -D__STDC_LIMIT_MACROS -fno-strict-aliasing -fpermissive -fopenmp -DOPENMP -O3 -fno-tree-vectorize -DNDEBUG src/dpe.cpp -o src/dpe -Wl,-z,relro -Wl,-z,now -L/build/delly-e8BAnu/delly-1.0.3/src/htslib/ -L/build/delly-e8BAnu/delly-1.0.3/src/htslib//lib -lboost_iostreams -lboost_filesystem -lboost_system -lboost_program_options -lboost_date_time -lhts -lz -llzma -lbz2 -Wl,-rpath,/build/delly-e8BAnu/delly-1.0.3/src/htslib/ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/property_map/vector_property_map.hpp:14, from /usr/include/boost/property_map/property_map.hpp:602, from /usr/include/boost/graph/adjacency_list.hpp:27, from src/dpe.cpp:5: /usr/include/boost/progress.hpp:23:1: note: ‘#pragma message: This header is deprecated. Use the facilities in or instead.’ 23 | BOOST_HEADER_DEPRECATED( "the facilities in or " ) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/timer.hpp:21:1: note: ‘#pragma message: This header is deprecated. Use the facilities in instead.’ 21 | BOOST_HEADER_DEPRECATED( "the facilities in " ) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/property_map/vector_property_map.hpp:14, from /usr/include/boost/property_map/property_map.hpp:602, from /usr/include/boost/graph/adjacency_list.hpp:27, from src/delly.h:8, from src/delly.cpp:17: /usr/include/boost/progress.hpp:23:1: note: ‘#pragma message: This header is deprecated. Use the facilities in or instead.’ 23 | BOOST_HEADER_DEPRECATED( "the facilities in or " ) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/timer.hpp:21:1: note: ‘#pragma message: This header is deprecated. Use the facilities in instead.’ 21 | BOOST_HEADER_DEPRECATED( "the facilities in " ) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from src/coral.h:18, from src/delly.cpp:22: src/scan.h: In instantiation of ‘void torali::scan(const TConfig&, const torali::LibraryInfo&, std::vector >&) [with TConfig = torali::CountDNAConfig]’: src/coral.h:707:11: required from here src/scan.h:99:30: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 99 | if ((it->lower() >= 0) && (it->upper() < hdr->target_len[refIndex])) { | ~~~~~~~~~~~~~^~~~~ In member function ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = char; _Args = {}; _Tp = char]’, inlined from ‘typename std::enable_if::value>::type boost::allocator_construct(A&, T*, Args&& ...) [with A = std::allocator; T = char; Args = {}]’ at /usr/include/boost/core/allocator_access.hpp:432:16, inlined from ‘void boost::alloc_construct_n(A&, T*, std::size_t) [with A = std::allocator; T = char]’ at /usr/include/boost/core/alloc_construct.hpp:122:35, inlined from ‘void boost::multi_array::allocate_space() [with T = char; long unsigned int NumDims = 2; Allocator = std::allocator]’ at /usr/include/boost/multi_array.hpp:548:29, inlined from ‘boost::multi_array::multi_array(const Allocator&) [with T = char; long unsigned int NumDims = 2; Allocator = std::allocator]’ at /usr/include/boost/multi_array.hpp:156:19: cc1plus: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ offset 0 is out of the bounds [0, 0] [-Warray-bounds] In member function ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = bool; _Args = {}; _Tp = bool]’, inlined from ‘typename std::enable_if::value>::type boost::allocator_construct(A&, T*, Args&& ...) [with A = std::allocator; T = bool; Args = {}]’ at /usr/include/boost/core/allocator_access.hpp:432:16, inlined from ‘void boost::alloc_construct_n(A&, T*, std::size_t) [with A = std::allocator; T = bool]’ at /usr/include/boost/core/alloc_construct.hpp:122:35, inlined from ‘void boost::multi_array::allocate_space() [with T = bool; long unsigned int NumDims = 2; Allocator = std::allocator]’ at /usr/include/boost/multi_array.hpp:548:29, inlined from ‘boost::multi_array::multi_array(const Allocator&) [with T = bool; long unsigned int NumDims = 2; Allocator = std::allocator]’ at /usr/include/boost/multi_array.hpp:156:19, inlined from ‘void torali::consensus(const TConfig&, const TAlign&, std::string&, std::string&) [with TConfig = torali::TeguaConfig; TAlign = boost::multi_array]’ at src/msa.h:166:11: cc1plus: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ offset 0 is out of the bounds [0, 0] [-Warray-bounds] In member function ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = bool; _Args = {}; _Tp = bool]’, inlined from ‘typename std::enable_if::value>::type boost::allocator_construct(A&, T*, Args&& ...) [with A = std::allocator; T = bool; Args = {}]’ at /usr/include/boost/core/allocator_access.hpp:432:16, inlined from ‘void boost::alloc_construct_n(A&, T*, std::size_t) [with A = std::allocator; T = bool]’ at /usr/include/boost/core/alloc_construct.hpp:122:35, inlined from ‘void boost::multi_array::allocate_space() [with T = bool; long unsigned int NumDims = 2; Allocator = std::allocator]’ at /usr/include/boost/multi_array.hpp:548:29, inlined from ‘boost::multi_array::multi_array(const Allocator&) [with T = bool; long unsigned int NumDims = 2; Allocator = std::allocator]’ at /usr/include/boost/multi_array.hpp:156:19, inlined from ‘void torali::consensus(const TConfig&, const TAlign&, std::string&, std::string&) [with TConfig = torali::Config; TAlign = boost::multi_array]’ at src/msa.h:166:11: cc1plus: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ offset 0 is out of the bounds [0, 0] [-Warray-bounds] make[2]: Leaving directory '/build/delly-e8BAnu/delly-1.0.3' chrpath -d src/dpe src/delly make[1]: Leaving directory '/build/delly-e8BAnu/delly-1.0.3' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/build/delly-e8BAnu/delly-1.0.3' # avoiding redundant compile of delly make[1]: Leaving directory '/build/delly-e8BAnu/delly-1.0.3' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'delly' in '../delly_1.0.3-1_amd64.deb'. dpkg-deb: building package 'delly-dbgsym' in '../delly-dbgsym_1.0.3-1_amd64.deb'. dpkg-genbuildinfo --build=any -O../delly_1.0.3-1_amd64.buildinfo dpkg-genchanges --build=any -O../delly_1.0.3-1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/delly-e8BAnu /tmp/delly-1.0.3-1o5sleza6 I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.zrVGudCGQ7... I: success in 414.3613 seconds md5: delly-dbgsym_1.0.3-1_amd64.deb: OK md5: delly_1.0.3-1_amd64.deb: OK sha1: delly-dbgsym_1.0.3-1_amd64.deb: OK sha1: delly_1.0.3-1_amd64.deb: OK sha256: delly-dbgsym_1.0.3-1_amd64.deb: OK sha256: delly_1.0.3-1_amd64.deb: OK Checksums: OK