Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/d/dcm2niix/dcm2niix_1.0.20201102-1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/dcm2niix-1.0.20201102-11xbh2sdd/dcm2niix_1.0.20201102-1_amd64.buildinfo Get source package info: dcm2niix=1.0.20201102-1 Source URL: http://snapshot.notset.fr/mr/package/dcm2niix/1.0.20201102-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-11.1 automake=1:1.16.2-4 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.48 bash=5.1~rc2-1 binutils=2.35.1-2 binutils-common=2.35.1-2 binutils-x86-64-linux-gnu=2.35.1-2 bsdextrautils=2.36-3+b2 bsdutils=1:2.36-3+b2 build-essential=12.8 bzip2=1.0.8-4 ca-certificates=20200601 cmake=3.18.4-1 cmake-data=3.18.4-1 coreutils=8.32-4+b1 cpp=4:10.2.0-1 cpp-10=10.2.0-16 dash=0.5.10.2-7 debconf=1.5.74 debhelper=13.2.1 debianutils=4.11.2 dh-autoreconf=19 dh-strip-nondeterminism=1.9.0-1 diffutils=1:3.7-3 docutils-common=0.16+dfsg-3 dpkg=1.20.5 dpkg-dev=1.20.5 dwz=0.13-5 file=1:5.38-5 findutils=4.7.0+git20201010-2 g++=4:10.2.0-1 g++-10=10.2.0-16 gcc=4:10.2.0-1 gcc-10=10.2.0-16 gcc-10-base=10.2.0-16 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 grep=3.6-1 groff-base=1.22.4-5 gzip=1.10-2 hostname=3.23 init-system-helpers=1.58 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-8 libarchive-zip-perl=1.68-1 libarchive13=3.4.3-2 libasan6=10.2.0-16 libatomic1=10.2.0-16 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-3.1 libaudit1=1:2.8.5-3.1 libbinutils=2.35.1-2 libblkid1=2.36-3+b2 libbrotli1=1.0.9-2+b1 libbz2-1.0=1.0.8-4 libc-bin=2.31-4 libc-dev-bin=2.31-4 libc6=2.31-4 libc6-dev=2.31-4 libcap-ng0=0.7.9-2.2 libcc1-0=10.2.0-16 libcom-err2=1.45.6-1 libcroco3=0.6.13-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-2 libctf0=2.35.1-2 libcurl4=7.72.0-1 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.255 libdebhelper-perl=13.2.1 libdpkg-perl=1.20.5 libelf1=0.182-1 libexpat1=2.2.10-1 libffi7=3.3-4 libfile-stripnondeterminism-perl=1.9.0-1 libgcc-10-dev=10.2.0-16 libgcc-s1=10.2.0-16 libgcrypt20=1.8.7-2 libgdbm-compat4=1.18.1-5.1 libgdbm6=1.18.1-5.1 libglib2.0-0=2.66.2-1 libgmp10=2:6.2.0+dfsg-6 libgnutls30=3.6.15-4 libgomp1=10.2.0-16 libgpg-error0=1.38-2 libgssapi-krb5-2=1.17-10 libhogweed6=3.6-2 libicu67=67.1-4 libidn2-0=2.3.0-3 libisl22=0.22.1-1 libitm1=10.2.0-16 libjs-jquery=3.5.1+dfsg+~3.5.4-1 libjs-sphinxdoc=3.3.1-1 libjs-underscore=1.9.1~dfsg-1 libjsoncpp1=1.7.4-3.1 libk5crypto3=1.17-10 libkeyutils1=1.6.1-2 libkrb5-3=1.17-10 libkrb5support0=1.17-10 libldap-2.4-2=2.4.56+dfsg-1 liblsan0=10.2.0-16 liblz4-1=1.9.2-2 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.38-5 libmagic1=1:5.38-5 libmount1=2.36-3+b2 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libncurses6=6.2+20200918-1 libncursesw6=6.2+20200918-1 libnettle8=3.6-2 libnghttp2-14=1.41.0-3 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnss-nis=3.1-4 libnss-nisplus=1.3-4 libopenjp2-7=2.3.1-1 libopenjp2-7-dev=2.3.1-1 libp11-kit0=0.23.21-2 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpcre2-8-0=10.34-7 libpcre3=2:8.39-13 libperl5.32=5.32.0-4 libpipeline1=1.5.3-1 libprocps8=2:3.3.16-5 libpsl5=0.21.0-1.1 libpython3-stdlib=3.8.6-1 libpython3.8-minimal=3.8.6-1 libpython3.8-stdlib=3.8.6-1 libquadmath0=10.2.0-16 libreadline8=8.1~rc2-2 librhash0=1.4.0-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg-2 libsasl2-modules-db=2.1.27+dfsg-2 libseccomp2=2.5.0-3 libselinux1=3.1-2+b1 libsigsegv2=2.12-2 libsmartcols1=2.36-3+b2 libsqlite3-0=3.33.0-1 libssh2-1=1.8.0-2.1 libssl1.1=1.1.1h-1 libstdc++-10-dev=10.2.0-16 libstdc++6=10.2.0-16 libsub-override-perl=0.09-2 libsystemd0=246.6-2 libtasn1-6=4.16.0-2 libtinfo6=6.2+20200918-1 libtirpc-common=1.2.6-3 libtirpc-dev=1.2.6-3 libtirpc3=1.2.6-3 libtool=2.4.6-14 libtsan0=10.2.0-16 libturbojpeg0=1:2.0.5-1.1 libturbojpeg0-dev=1:2.0.5-1.1 libubsan1=10.2.0-16 libuchardet0=0.0.7-1 libudev1=246.6-2 libunistring2=0.9.10-4 libuuid1=2.36-3+b2 libuv1=1.40.0-1 libxml2=2.9.10+dfsg-6.2 libyaml-cpp-dev=0.6.3-9 libyaml-cpp0.6=0.6.3-9 libzstd1=1.4.5+dfsg-4 linux-libc-dev=5.9.6-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 mailcap=3.67 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 media-types=1.0.1 mime-support=3.66 ncurses-base=6.2+20200918-1 ncurses-bin=6.2+20200918-1 node-jquery=3.5.1+dfsg+~3.5.4-1 openssl=1.1.1h-1 patch=2.7.6-6 perl=5.32.0-4 perl-base=5.32.0-4 perl-modules-5.32=5.32.0-4 pkg-config=0.29.2-1 po-debconf=1.0.21 procps=2:3.3.16-5 python-babel-localedata=2.8.0+dfsg.1-4 python3=3.8.6-1 python3-alabaster=0.7.8-1.1 python3-babel=2.8.0+dfsg.1-4 python3-certifi=2020.6.20-1 python3-chardet=3.0.4-7 python3-distutils=3.8.6-1 python3-docutils=0.16+dfsg-3 python3-idna=2.10-1 python3-imagesize=1.2.0-2 python3-jinja2=2.11.2-1 python3-lib2to3=3.8.6-1 python3-markupsafe=1.1.1-1+b2 python3-minimal=3.8.6-1 python3-packaging=20.4-1 python3-pkg-resources=50.3.0-1 python3-pygments=2.7.1+dfsg-1 python3-pyparsing=2.4.7-1 python3-requests=2.24.0+dfsg-1 python3-roman=2.0.0-5 python3-six=1.15.0-2 python3-snowballstemmer=2.0.0-2 python3-sphinx=3.3.1-1 python3-tz=2020.4-2 python3-urllib3=1.25.9-1 python3.8=3.8.6-1 python3.8-minimal=3.8.6-1 readline-common=8.1~rc2-2 sed=4.7-1 sensible-utils=0.0.12+nmu1 sgml-base=1.30 sphinx-common=3.3.1-1 sysvinit-utils=2.96-5 tar=1.30+dfsg-7 tzdata=2020d-1 util-linux=2.36-3+b2 xml-core=0.18+nmu1 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201226T083054Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20201111T205648Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d dcm2niix=1.0.20201102-1 && mkdir -p /build/dcm2niix-P6KU2G && dpkg-source --no-check -x /*.dsc /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102 && chown -R builduser:builduser /build/dcm2niix-P6KU2G" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1605254900" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/dcm2niix-P6KU2G /tmp/dcm2niix-1.0.20201102-11xbh2sdd bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20201111T205648Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.vjsBww91UW as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.vjsBww91UW Reading package lists... Building dependency tree... util-linux is already the newest version (2.36-3+b2). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20201111T205648Z unstable/main amd64 libfakeroot amd64 1.25.3-1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20201111T205648Z unstable/main amd64 fakeroot amd64 1.25.3-1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (987 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4694 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1_amd64.deb ... Unpacking fakeroot (1.25.3-1) ... Setting up libfakeroot:amd64 (1.25.3-1) ... Setting up fakeroot (1.25.3-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-4) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201226T083054Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20201111T205648Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.vjsBww91UW Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:2 http://snapshot.notset.fr/archive/debian/20201226T083054Z unstable InRelease [153 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20201111T205648Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20201226T083054Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20201226T083054Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20201226T083054Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20201226T083054Z unstable/main amd64 Packages [11.6 MB] Fetched 34.3 MB in 31s (1116 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.vjsBww91UW I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d dcm2niix=1.0.20201102-1 && mkdir -p /build/dcm2niix-P6KU2G && dpkg-source --no-check -x /*.dsc /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102 && chown -R builduser:builduser /build/dcm2niix-P6KU2G"' exec /tmp/mmdebstrap.vjsBww91UW Reading package lists... NOTICE: 'dcm2niix' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/dcm2niix.git Please use: git clone https://salsa.debian.org/med-team/dcm2niix.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 389 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main dcm2niix 1.0.20201102-1 (dsc) [2106 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main dcm2niix 1.0.20201102-1 (tar) [383 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main dcm2niix 1.0.20201102-1 (diff) [4144 B] Fetched 389 kB in 0s (1039 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'dcm2niix_1.0.20201102-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting dcm2niix in /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102 dpkg-source: info: unpacking dcm2niix_1.0.20201102.orig.tar.gz dpkg-source: info: unpacking dcm2niix_1.0.20201102-1.debian.tar.xz I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1605254900" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.vjsBww91UW dpkg-buildpackage: info: source package dcm2niix dpkg-buildpackage: info: source version 1.0.20201102-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --sourcedirectory=console --buildsystem=cmake debian/rules override_dh_auto_clean make[1]: Entering directory '/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102' dh_auto_clean rm -f -rf build/man make[1]: Leaving directory '/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102' dh_autoreconf_clean -O--sourcedirectory=console -O--buildsystem=cmake dh_clean -O--sourcedirectory=console -O--buildsystem=cmake debian/rules binary-arch dh binary-arch --sourcedirectory=console --buildsystem=cmake dh_update_autotools_config -a -O--sourcedirectory=console -O--buildsystem=cmake dh_autoreconf -a -O--sourcedirectory=console -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102' dh_auto_configure -- -DBATCH_VERSION=ON \ -DUSE_STATIC_RUNTIME=OFF \ -DUSE_SYSTEM_ZLIB=ON \ -DUSE_OPENJPEG=ON \ -DUSE_TURBOJPEG=ON cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBATCH_VERSION=ON -DUSE_STATIC_RUNTIME=OFF -DUSE_SYSTEM_ZLIB=ON -DUSE_OPENJPEG=ON -DUSE_TURBOJPEG=ON ../console -- The C compiler identification is GNU 10.2.0 -- The CXX compiler identification is GNU 10.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test HAS_SSE2 -- Performing Test HAS_SSE2 - Success -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Checking for module 'libturbojpeg' -- Found libturbojpeg, version 2.0.5 -- The imported target "openjp2_static" references the file "/usr/lib/x86_64-linux-gnu/libopenjp2.a" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/openjpeg-2.1/OpenJPEGTargets.cmake" but not all the files it references. -- The imported target "openjpip" references the file "/usr/lib/x86_64-linux-gnu/libopenjpip.so.2.3.1" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/openjpeg-2.1/OpenJPEGTargets.cmake" but not all the files it references. -- The imported target "openjpip_server" references the file "/usr/lib/x86_64-linux-gnu/libopenjpip_server.a" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/openjpeg-2.1/OpenJPEGTargets.cmake" but not all the files it references. -- The imported target "opj_decompress" references the file "/usr/bin/opj_decompress" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/openjpeg-2.1/OpenJPEGTargets.cmake" but not all the files it references. -- The imported target "opj_compress" references the file "/usr/bin/opj_compress" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/openjpeg-2.1/OpenJPEGTargets.cmake" but not all the files it references. -- The imported target "opj_dump" references the file "/usr/bin/opj_dump" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/openjpeg-2.1/OpenJPEGTargets.cmake" but not all the files it references. -- The imported target "opj_jpip_addxml" references the file "/usr/bin/opj_jpip_addxml" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/openjpeg-2.1/OpenJPEGTargets.cmake" but not all the files it references. -- The imported target "opj_server" references the file "/usr/bin/opj_server" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/openjpeg-2.1/OpenJPEGTargets.cmake" but not all the files it references. -- The imported target "opj_dec_server" references the file "/usr/bin/opj_dec_server" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/openjpeg-2.1/OpenJPEGTargets.cmake" but not all the files it references. -- The imported target "opj_jpip_transcode" references the file "/usr/bin/opj_jpip_transcode" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/openjpeg-2.1/OpenJPEGTargets.cmake" but not all the files it references. -- The imported target "opj_jpip_test" references the file "/usr/bin/opj_jpip_test" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/openjpeg-2.1/OpenJPEGTargets.cmake" but not all the files it references. -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR USE_SYSTEM_ZLIB -- Build files have been written to: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102' debian/rules override_dh_auto_build make[1]: Entering directory '/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102' dh_auto_build cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console -B/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/obj-x86_64-linux-gnu/CMakeFiles /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/obj-x86_64-linux-gnu' make -f CMakeFiles/dcm2niibatch.dir/build.make CMakeFiles/dcm2niibatch.dir/depend make -f CMakeFiles/dcm2niix.dir/build.make CMakeFiles/dcm2niix.dir/depend make[4]: Entering directory '/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/obj-x86_64-linux-gnu' cd /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/obj-x86_64-linux-gnu /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/obj-x86_64-linux-gnu /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/obj-x86_64-linux-gnu/CMakeFiles/dcm2niibatch.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/obj-x86_64-linux-gnu' cd /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/obj-x86_64-linux-gnu /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/obj-x86_64-linux-gnu /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/obj-x86_64-linux-gnu/CMakeFiles/dcm2niix.dir/DependInfo.cmake --color= Scanning dependencies of target dcm2niibatch Scanning dependencies of target dcm2niix make[4]: Leaving directory '/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/obj-x86_64-linux-gnu' make -f CMakeFiles/dcm2niibatch.dir/build.make CMakeFiles/dcm2niibatch.dir/build make[4]: Leaving directory '/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/obj-x86_64-linux-gnu' make -f CMakeFiles/dcm2niix.dir/build.make CMakeFiles/dcm2niix.dir/build make[4]: Entering directory '/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/obj-x86_64-linux-gnu' [ 5%] Building CXX object CMakeFiles/dcm2niibatch.dir/main_console_batch.cpp.o [ 11%] Building CXX object CMakeFiles/dcm2niibatch.dir/jpg_0XC3.cpp.o /usr/bin/c++ -DmyTurboJPEG -I/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/include -I/usr/include/openjpeg-2.3 -g -O2 -fdebug-prefix-map=/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mfpmath=sse -std=c++11 -Wno-format-overflow -Wno-unused-result -fno-diagnostics-show-caret -o CMakeFiles/dcm2niibatch.dir/main_console_batch.cpp.o -c /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/main_console_batch.cpp /usr/bin/c++ -DmyTurboJPEG -I/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/include -I/usr/include/openjpeg-2.3 -g -O2 -fdebug-prefix-map=/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mfpmath=sse -std=c++11 -Wno-format-overflow -Wno-unused-result -fno-diagnostics-show-caret -o CMakeFiles/dcm2niibatch.dir/jpg_0XC3.cpp.o -c /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/jpg_0XC3.cpp [ 16%] Building CXX object CMakeFiles/dcm2niibatch.dir/nii_dicom.cpp.o /usr/bin/c++ -DmyTurboJPEG -I/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/include -I/usr/include/openjpeg-2.3 -g -O2 -fdebug-prefix-map=/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mfpmath=sse -std=c++11 -Wno-format-overflow -Wno-unused-result -fno-diagnostics-show-caret -o CMakeFiles/dcm2niibatch.dir/nii_dicom.cpp.o -c /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp [ 22%] Building CXX object CMakeFiles/dcm2niix.dir/main_console.cpp.o /usr/bin/c++ -DmyTurboJPEG -I/usr/include/openjpeg-2.3 -g -O2 -fdebug-prefix-map=/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mfpmath=sse -std=c++11 -Wno-format-overflow -Wno-unused-result -fno-diagnostics-show-caret -o CMakeFiles/dcm2niix.dir/main_console.cpp.o -c /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/main_console.cpp /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/jpg_0XC3.cpp:186: warning: ignoring ‘#pragma unused ’ [-Wunknown-pragmas] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/jpg_0XC3.cpp:257: warning: ignoring ‘#pragma unused ’ [-Wunknown-pragmas] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/jpg_0XC3.cpp:259: warning: ignoring ‘#pragma unused ’ [-Wunknown-pragmas] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/jpg_0XC3.cpp:264: warning: ignoring ‘#pragma unused ’ [-Wunknown-pragmas] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/jpg_0XC3.cpp: In function ‘unsigned char* decode_JPEG_SOF_0XC3(const char*, int, bool, int*, int*, int*, int*, int)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/jpg_0XC3.cpp:136:25: warning: variable ‘btS2’ set but not used [-Wunused-but-set-variable] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/jpg_0XC3.cpp:136:31: warning: variable ‘SOSse’ set but not used [-Wunused-but-set-variable] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp: In function ‘unsigned char* nii_loadImgCoreOpenJPEG(char*, nifti_1_header, TDICOMdata, int)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp:226:12: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp: In function ‘int readCSAImageHeader(unsigned char*, int, TCSAdata*, int, bool)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp:1372:19: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp:1374:6: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp: In function ‘void cleanStr(char*)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp:1594:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp:1621:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp:1625:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp: In function ‘unsigned char* nii_loadImgCore(char*, nifti_1_header, int)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp:2741:17: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘long unsigned int’ [-Wsign-compare] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp: In function ‘unsigned char* nii_loadImgPMSCT_RLE1(char*, nifti_1_header, TDICOMdata)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp:3395:12: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp:3402:22: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp:3426:22: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp: In function ‘TDICOMdata readDICOMv(char*, int, int, TDTI4D*)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp:4567:49: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp:4620:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp:4912:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp:6410:26: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp:6970:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp:6971:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] [ 27%] Building CXX object CMakeFiles/dcm2niix.dir/nii_dicom.cpp.o /usr/bin/c++ -DmyTurboJPEG -I/usr/include/openjpeg-2.3 -g -O2 -fdebug-prefix-map=/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mfpmath=sse -std=c++11 -Wno-format-overflow -Wno-unused-result -fno-diagnostics-show-caret -o CMakeFiles/dcm2niix.dir/nii_dicom.cpp.o -c /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp: In function ‘unsigned char* nii_loadImgCoreOpenJPEG(char*, nifti_1_header, TDICOMdata, int)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp:226:12: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp: In function ‘int readCSAImageHeader(unsigned char*, int, TCSAdata*, int, bool)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp:1372:19: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp:1374:6: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp: In function ‘void cleanStr(char*)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp:1594:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp:1621:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp:1625:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] [ 33%] Building CXX object CMakeFiles/dcm2niibatch.dir/ujpeg.cpp.o /usr/bin/c++ -DmyTurboJPEG -I/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/include -I/usr/include/openjpeg-2.3 -g -O2 -fdebug-prefix-map=/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mfpmath=sse -std=c++11 -Wno-format-overflow -Wno-unused-result -fno-diagnostics-show-caret -o CMakeFiles/dcm2niibatch.dir/ujpeg.cpp.o -c /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/ujpeg.cpp /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp: In function ‘unsigned char* nii_loadImgCore(char*, nifti_1_header, int)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp:2741:17: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘long unsigned int’ [-Wsign-compare] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp: In function ‘unsigned char* nii_loadImgPMSCT_RLE1(char*, nifti_1_header, TDICOMdata)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp:3395:12: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp:3402:22: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp:3426:22: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp: In function ‘TDICOMdata readDICOMv(char*, int, int, TDTI4D*)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp:4567:49: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp:4620:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp:4912:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp:6410:26: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp:6970:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp:6971:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] [ 38%] Building CXX object CMakeFiles/dcm2niibatch.dir/nifti1_io_core.cpp.o /usr/bin/c++ -DmyTurboJPEG -I/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/include -I/usr/include/openjpeg-2.3 -g -O2 -fdebug-prefix-map=/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mfpmath=sse -std=c++11 -Wno-format-overflow -Wno-unused-result -fno-diagnostics-show-caret -o CMakeFiles/dcm2niibatch.dir/nifti1_io_core.cpp.o -c /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nifti1_io_core.cpp [ 44%] Building CXX object CMakeFiles/dcm2niibatch.dir/nii_foreign.cpp.o /usr/bin/c++ -DmyTurboJPEG -I/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/include -I/usr/include/openjpeg-2.3 -g -O2 -fdebug-prefix-map=/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mfpmath=sse -std=c++11 -Wno-format-overflow -Wno-unused-result -fno-diagnostics-show-caret -o CMakeFiles/dcm2niibatch.dir/nii_foreign.cpp.o -c /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_foreign.cpp [ 50%] Building CXX object CMakeFiles/dcm2niix.dir/jpg_0XC3.cpp.o /usr/bin/c++ -DmyTurboJPEG -I/usr/include/openjpeg-2.3 -g -O2 -fdebug-prefix-map=/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mfpmath=sse -std=c++11 -Wno-format-overflow -Wno-unused-result -fno-diagnostics-show-caret -o CMakeFiles/dcm2niix.dir/jpg_0XC3.cpp.o -c /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/jpg_0XC3.cpp /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/jpg_0XC3.cpp:186: warning: ignoring ‘#pragma unused ’ [-Wunknown-pragmas] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/jpg_0XC3.cpp:257: warning: ignoring ‘#pragma unused ’ [-Wunknown-pragmas] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/jpg_0XC3.cpp:259: warning: ignoring ‘#pragma unused ’ [-Wunknown-pragmas] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/jpg_0XC3.cpp:264: warning: ignoring ‘#pragma unused ’ [-Wunknown-pragmas] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/jpg_0XC3.cpp: In function ‘unsigned char* decode_JPEG_SOF_0XC3(const char*, int, bool, int*, int*, int*, int*, int)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/jpg_0XC3.cpp:136:25: warning: variable ‘btS2’ set but not used [-Wunused-but-set-variable] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/jpg_0XC3.cpp:136:31: warning: variable ‘SOSse’ set but not used [-Wunused-but-set-variable] [ 55%] Building CXX object CMakeFiles/dcm2niix.dir/ujpeg.cpp.o /usr/bin/c++ -DmyTurboJPEG -I/usr/include/openjpeg-2.3 -g -O2 -fdebug-prefix-map=/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mfpmath=sse -std=c++11 -Wno-format-overflow -Wno-unused-result -fno-diagnostics-show-caret -o CMakeFiles/dcm2niix.dir/ujpeg.cpp.o -c /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/ujpeg.cpp [ 61%] Building CXX object CMakeFiles/dcm2niibatch.dir/nii_ortho.cpp.o /usr/bin/c++ -DmyTurboJPEG -I/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/include -I/usr/include/openjpeg-2.3 -g -O2 -fdebug-prefix-map=/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mfpmath=sse -std=c++11 -Wno-format-overflow -Wno-unused-result -fno-diagnostics-show-caret -o CMakeFiles/dcm2niibatch.dir/nii_ortho.cpp.o -c /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_ortho.cpp [ 66%] Building CXX object CMakeFiles/dcm2niix.dir/nifti1_io_core.cpp.o /usr/bin/c++ -DmyTurboJPEG -I/usr/include/openjpeg-2.3 -g -O2 -fdebug-prefix-map=/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mfpmath=sse -std=c++11 -Wno-format-overflow -Wno-unused-result -fno-diagnostics-show-caret -o CMakeFiles/dcm2niix.dir/nifti1_io_core.cpp.o -c /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nifti1_io_core.cpp [ 72%] Building CXX object CMakeFiles/dcm2niibatch.dir/nii_dicom_batch.cpp.o /usr/bin/c++ -DmyTurboJPEG -I/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/include -I/usr/include/openjpeg-2.3 -g -O2 -fdebug-prefix-map=/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mfpmath=sse -std=c++11 -Wno-format-overflow -Wno-unused-result -fno-diagnostics-show-caret -o CMakeFiles/dcm2niibatch.dir/nii_dicom_batch.cpp.o -c /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp In file included from /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:22: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/miniz.c:3805: warning: ignoring ‘#pragma unused ’ [-Wunknown-pragmas] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/miniz.c:3808: warning: ignoring ‘#pragma unused ’ [-Wunknown-pragmas] In file included from /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:22: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/miniz.c:4684: warning: ignoring ‘#pragma unused ’ [-Wunknown-pragmas] In file included from /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:22: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/miniz.c: In function ‘tinfl_status tinfl_decompress(tinfl_decompressor*, const mz_uint8*, size_t*, mz_uint8*, mz_uint8*, size_t*, mz_uint32)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/miniz.c:1506:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/miniz.c:1506:47: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/miniz.c: In function ‘void tdefl_find_match(tdefl_compressor*, mz_uint, mz_uint, mz_uint, mz_uint*, mz_uint*)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/miniz.c:2290:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/miniz.c:2290:23: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘int geProtocolBlock(const char*, int, int, int, int*, int*, int*, int*, float*, char*)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:816:29: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:821:29: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘void json_Str(FILE*, const char*, char*)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:901:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘void nii_SaveBIDSX(char*, TDICOMdata, TDCMopts, nifti_1_header*, const char*, TDTI4D*)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:1509:12: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:1511:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘void swapDim3Dim4(int, int, TDCMsort*)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:2290:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:2297:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘int nii_createFilename(TDICOMdata, char*, TDCMopts)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:2705:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘int nii_saveNRRD(char*, nifti_1_header, unsigned char*, TDCMopts, TDICOMdata, TDTI4D*, int)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3148:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3150:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3220:7: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3222:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘void removeSclSlopeInter(nifti_1_header*, unsigned char*)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3381:4: warning: ISO C++ forbids braced-groups within expressions [-Wpedantic] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3400:9: note: in expansion of macro ‘min’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3374:4: warning: ISO C++ forbids braced-groups within expressions [-Wpedantic] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3401:9: note: in expansion of macro ‘max’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3381:4: warning: ISO C++ forbids braced-groups within expressions [-Wpedantic] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3419:8: note: in expansion of macro ‘min’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3374:4: warning: ISO C++ forbids braced-groups within expressions [-Wpedantic] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3420:8: note: in expansion of macro ‘max’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘void swapEndian(nifti_1_header*, unsigned char*, bool)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3441:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3443:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘void sliceTimingXA(TDCMsort*, TDICOMdata*, nifti_1_header*, int, const char*, int)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3381:4: warning: ISO C++ forbids braced-groups within expressions [-Wpedantic] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:4566:8: note: in expansion of macro ‘min’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘void sliceTimeGE(TDICOMdata*, int, int, float, bool, bool, float)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:4581:6: warning: unused variable ‘nDiscardedSlices’ [-Wunused-variable] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘void readSoftwareVersionsGE(char*, int, char*, float*, int*, int*, int*, bool*)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:4655:9: warning: unused variable ‘ver1’ [-Wunused-variable] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:4655:15: warning: unused variable ‘ver2’ [-Wunused-variable] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:4655:21: warning: unused variable ‘ver3’ [-Wunused-variable] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘void sliceTimingGE_Testx0021x105E(TDICOMdata*, TDCMopts, nifti_1_header*, TDCMsort*, TDICOMdata*)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3381:4: warning: ISO C++ forbids braced-groups within expressions [-Wpedantic] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:4687:8: note: in expansion of macro ‘min’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3374:4: warning: ISO C++ forbids braced-groups within expressions [-Wpedantic] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:4693:11: note: in expansion of macro ‘max’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘void sliceTimingGE(TDICOMdata*, const char*, TDCMopts, nifti_1_header*, TDCMsort*, TDICOMdata*)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3374:4: warning: ISO C++ forbids braced-groups within expressions [-Wpedantic] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:4745:12: note: in expansion of macro ‘max’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3374:4: warning: ISO C++ forbids braced-groups within expressions [-Wpedantic] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:4748:27: note: in expansion of macro ‘max’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘void loadOverlay(char*, unsigned char*, int, int, int, int)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:5050:17: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:5056:13: warning: unused variable ‘sz’ [-Wunused-variable] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘int saveDcm2NiiCore(int, TDCMsort*, TDICOMdata*, TSearchList*, TDCMopts, TDTI4D*, int)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3381:4: warning: ISO C++ forbids braced-groups within expressions [-Wpedantic] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:5246:16: note: in expansion of macro ‘min’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3374:4: warning: ISO C++ forbids braced-groups within expressions [-Wpedantic] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:5247:16: note: in expansion of macro ‘max’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3374:4: warning: ISO C++ forbids braced-groups within expressions [-Wpedantic] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:5251:40: note: in expansion of macro ‘max’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:5363:12: warning: variable ‘isInconsistenSliceDir’ set but not used [-Wunused-but-set-variable] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:5715:11: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:5717:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:5086:14: warning: variable ‘indx1’ set but not used [-Wunused-but-set-variable] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘int nii_loadDirCore(char*, TDCMopts*)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:6822:9: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:6824:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘int nii_loadDir(TDCMopts*)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:6958:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:6960:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ [ 77%] Building CXX object CMakeFiles/dcm2niix.dir/nii_foreign.cpp.o /usr/bin/c++ -DmyTurboJPEG -I/usr/include/openjpeg-2.3 -g -O2 -fdebug-prefix-map=/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mfpmath=sse -std=c++11 -Wno-format-overflow -Wno-unused-result -fno-diagnostics-show-caret -o CMakeFiles/dcm2niix.dir/nii_foreign.cpp.o -c /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_foreign.cpp /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘void nii_SaveBIDS(char*, TDICOMdata, TDCMopts, nifti_1_header*, const char*)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:1667:22: warning: ‘dti4D’ is used uninitialized in this function [-Wuninitialized] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp:6670:22: warning: ‘vr[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized] [ 83%] Building CXX object CMakeFiles/dcm2niix.dir/nii_ortho.cpp.o /usr/bin/c++ -DmyTurboJPEG -I/usr/include/openjpeg-2.3 -g -O2 -fdebug-prefix-map=/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mfpmath=sse -std=c++11 -Wno-format-overflow -Wno-unused-result -fno-diagnostics-show-caret -o CMakeFiles/dcm2niix.dir/nii_ortho.cpp.o -c /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_ortho.cpp /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom.cpp:6670:22: warning: ‘vr[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized] [ 88%] Building CXX object CMakeFiles/dcm2niix.dir/nii_dicom_batch.cpp.o /usr/bin/c++ -DmyTurboJPEG -I/usr/include/openjpeg-2.3 -g -O2 -fdebug-prefix-map=/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mfpmath=sse -std=c++11 -Wno-format-overflow -Wno-unused-result -fno-diagnostics-show-caret -o CMakeFiles/dcm2niix.dir/nii_dicom_batch.cpp.o -c /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp In file included from /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:22: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/miniz.c:3805: warning: ignoring ‘#pragma unused ’ [-Wunknown-pragmas] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/miniz.c:3808: warning: ignoring ‘#pragma unused ’ [-Wunknown-pragmas] In file included from /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:22: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/miniz.c:4684: warning: ignoring ‘#pragma unused ’ [-Wunknown-pragmas] In file included from /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:22: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/miniz.c: In function ‘tinfl_status tinfl_decompress(tinfl_decompressor*, const mz_uint8*, size_t*, mz_uint8*, mz_uint8*, size_t*, mz_uint32)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/miniz.c:1506:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/miniz.c:1506:47: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/miniz.c: In function ‘void tdefl_find_match(tdefl_compressor*, mz_uint, mz_uint, mz_uint, mz_uint*, mz_uint*)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/miniz.c:2290:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/miniz.c:2290:23: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘int geProtocolBlock(const char*, int, int, int, int*, int*, int*, int*, float*, char*)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:816:29: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:821:29: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘void json_Str(FILE*, const char*, char*)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:901:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘void nii_SaveBIDSX(char*, TDICOMdata, TDCMopts, nifti_1_header*, const char*, TDTI4D*)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:1509:12: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:1511:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘void swapDim3Dim4(int, int, TDCMsort*)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:2290:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:2297:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘int nii_createFilename(TDICOMdata, char*, TDCMopts)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:2705:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘int nii_saveNRRD(char*, nifti_1_header, unsigned char*, TDCMopts, TDICOMdata, TDTI4D*, int)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3148:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3150:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3220:7: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3222:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘void removeSclSlopeInter(nifti_1_header*, unsigned char*)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3381:4: warning: ISO C++ forbids braced-groups within expressions [-Wpedantic] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3400:9: note: in expansion of macro ‘min’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3374:4: warning: ISO C++ forbids braced-groups within expressions [-Wpedantic] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3401:9: note: in expansion of macro ‘max’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3381:4: warning: ISO C++ forbids braced-groups within expressions [-Wpedantic] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3419:8: note: in expansion of macro ‘min’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3374:4: warning: ISO C++ forbids braced-groups within expressions [-Wpedantic] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3420:8: note: in expansion of macro ‘max’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘void swapEndian(nifti_1_header*, unsigned char*, bool)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3441:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3443:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘void sliceTimingXA(TDCMsort*, TDICOMdata*, nifti_1_header*, int, const char*, int)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3381:4: warning: ISO C++ forbids braced-groups within expressions [-Wpedantic] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:4566:8: note: in expansion of macro ‘min’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘void sliceTimeGE(TDICOMdata*, int, int, float, bool, bool, float)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:4581:6: warning: unused variable ‘nDiscardedSlices’ [-Wunused-variable] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘void readSoftwareVersionsGE(char*, int, char*, float*, int*, int*, int*, bool*)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:4655:9: warning: unused variable ‘ver1’ [-Wunused-variable] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:4655:15: warning: unused variable ‘ver2’ [-Wunused-variable] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:4655:21: warning: unused variable ‘ver3’ [-Wunused-variable] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘void sliceTimingGE_Testx0021x105E(TDICOMdata*, TDCMopts, nifti_1_header*, TDCMsort*, TDICOMdata*)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3381:4: warning: ISO C++ forbids braced-groups within expressions [-Wpedantic] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:4687:8: note: in expansion of macro ‘min’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3374:4: warning: ISO C++ forbids braced-groups within expressions [-Wpedantic] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:4693:11: note: in expansion of macro ‘max’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘void sliceTimingGE(TDICOMdata*, const char*, TDCMopts, nifti_1_header*, TDCMsort*, TDICOMdata*)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3374:4: warning: ISO C++ forbids braced-groups within expressions [-Wpedantic] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:4745:12: note: in expansion of macro ‘max’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3374:4: warning: ISO C++ forbids braced-groups within expressions [-Wpedantic] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:4748:27: note: in expansion of macro ‘max’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘void loadOverlay(char*, unsigned char*, int, int, int, int)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:5050:17: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:5056:13: warning: unused variable ‘sz’ [-Wunused-variable] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘int saveDcm2NiiCore(int, TDCMsort*, TDICOMdata*, TSearchList*, TDCMopts, TDTI4D*, int)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3381:4: warning: ISO C++ forbids braced-groups within expressions [-Wpedantic] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:5246:16: note: in expansion of macro ‘min’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3374:4: warning: ISO C++ forbids braced-groups within expressions [-Wpedantic] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:5247:16: note: in expansion of macro ‘max’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:3374:4: warning: ISO C++ forbids braced-groups within expressions [-Wpedantic] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:5251:40: note: in expansion of macro ‘max’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:5363:12: warning: variable ‘isInconsistenSliceDir’ set but not used [-Wunused-but-set-variable] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:5715:11: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:5717:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:5086:14: warning: variable ‘indx1’ set but not used [-Wunused-but-set-variable] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘int nii_loadDirCore(char*, TDCMopts*)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:6822:9: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:6824:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘int nii_loadDir(TDCMopts*)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:6958:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:6960:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘void nii_SaveBIDS(char*, TDICOMdata, TDCMopts, nifti_1_header*, const char*)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:1667:22: warning: ‘dti4D’ is used uninitialized in this function [-Wuninitialized] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘void readSoftwareVersionsGE(char*, int, char*, float*, int*, int*, int*, bool*)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:4653:24: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:4652:42: note: at offset 11 to an object with size 11 allocated by ‘malloc’ here /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘void searchDirForDICOM(char*, TSearchList*, int, int, TDCMopts*)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:6251:16: warning: ‘dir.tinydir_dir::has_next’ may be used uninitialized in this function [-Wmaybe-uninitialized] In file included from /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:29: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/tinydir.h:279:19: warning: ‘dir.tinydir_dir::_d’ may be used uninitialized in this function [-Wmaybe-uninitialized] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/tinydir.h:309:11: warning: ‘dir.tinydir_dir::_e’ may be used uninitialized in this function [-Wmaybe-uninitialized] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/tinydir.h:241:11: warning: ‘dir.tinydir_dir::_files’ may be used uninitialized in this function [-Wmaybe-uninitialized] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘void readSoftwareVersionsGE(char*, int, char*, float*, int*, int*, int*, bool*)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:4653:24: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:4652:42: note: at offset 11 to an object with size 11 allocated by ‘malloc’ here /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘int nii_loadDirOneDirAtATime(char*, TDCMopts*, int, int)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:6863:16: warning: ‘dir.tinydir_dir::has_next’ may be used uninitialized in this function [-Wmaybe-uninitialized] In file included from /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:29: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/tinydir.h:309:11: warning: ‘dir.tinydir_dir::_e’ may be used uninitialized in this function [-Wmaybe-uninitialized] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/tinydir.h:241:11: warning: ‘dir.tinydir_dir::_files’ may be used uninitialized in this function [-Wmaybe-uninitialized] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/tinydir.h:253:11: warning: ‘dir.tinydir_dir::_d’ may be used uninitialized in this function [-Wmaybe-uninitialized] [ 94%] Linking CXX executable dcm2niibatch /usr/bin/cmake -E cmake_link_script CMakeFiles/dcm2niibatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mfpmath=sse -std=c++11 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/dcm2niibatch.dir/main_console_batch.cpp.o CMakeFiles/dcm2niibatch.dir/nii_dicom.cpp.o CMakeFiles/dcm2niibatch.dir/jpg_0XC3.cpp.o CMakeFiles/dcm2niibatch.dir/ujpeg.cpp.o CMakeFiles/dcm2niibatch.dir/nifti1_io_core.cpp.o CMakeFiles/dcm2niibatch.dir/nii_foreign.cpp.o CMakeFiles/dcm2niibatch.dir/nii_ortho.cpp.o CMakeFiles/dcm2niibatch.dir/nii_dicom_batch.cpp.o -o dcm2niibatch /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.6.3 -lturbojpeg /usr/lib/x86_64-linux-gnu/libopenjp2.so.2.3.1 -lm -lpthread make[4]: Leaving directory '/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/obj-x86_64-linux-gnu' [ 94%] Built target dcm2niibatch /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘void searchDirForDICOM(char*, TSearchList*, int, int, TDCMopts*)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:6251:16: warning: ‘dir.tinydir_dir::has_next’ may be used uninitialized in this function [-Wmaybe-uninitialized] In file included from /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:29: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/tinydir.h:279:19: warning: ‘dir.tinydir_dir::_d’ may be used uninitialized in this function [-Wmaybe-uninitialized] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/tinydir.h:309:11: warning: ‘dir.tinydir_dir::_e’ may be used uninitialized in this function [-Wmaybe-uninitialized] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/tinydir.h:241:11: warning: ‘dir.tinydir_dir::_files’ may be used uninitialized in this function [-Wmaybe-uninitialized] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp: In function ‘int nii_loadDirOneDirAtATime(char*, TDCMopts*, int, int)’: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:6863:16: warning: ‘dir.tinydir_dir::has_next’ may be used uninitialized in this function [-Wmaybe-uninitialized] In file included from /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/nii_dicom_batch.cpp:29: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/tinydir.h:309:11: warning: ‘dir.tinydir_dir::_e’ may be used uninitialized in this function [-Wmaybe-uninitialized] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/tinydir.h:241:11: warning: ‘dir.tinydir_dir::_files’ may be used uninitialized in this function [-Wmaybe-uninitialized] /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console/tinydir.h:253:11: warning: ‘dir.tinydir_dir::_d’ may be used uninitialized in this function [-Wmaybe-uninitialized] [100%] Linking CXX executable dcm2niix /usr/bin/cmake -E cmake_link_script CMakeFiles/dcm2niix.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mfpmath=sse -std=c++11 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/dcm2niix.dir/main_console.cpp.o CMakeFiles/dcm2niix.dir/nii_dicom.cpp.o CMakeFiles/dcm2niix.dir/jpg_0XC3.cpp.o CMakeFiles/dcm2niix.dir/ujpeg.cpp.o CMakeFiles/dcm2niix.dir/nifti1_io_core.cpp.o CMakeFiles/dcm2niix.dir/nii_foreign.cpp.o CMakeFiles/dcm2niix.dir/nii_ortho.cpp.o CMakeFiles/dcm2niix.dir/nii_dicom_batch.cpp.o -o dcm2niix -lturbojpeg /usr/lib/x86_64-linux-gnu/libopenjp2.so.2.3.1 -lm -lpthread make[4]: Leaving directory '/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/obj-x86_64-linux-gnu' [100%] Built target dcm2niix make[3]: Leaving directory '/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/obj-x86_64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/obj-x86_64-linux-gnu' sphinx-build -N -b man docs/source build/man Running Sphinx v3.3.1 making output directory... done WARNING: html_static_path entry '_static' does not exist building [mo]: targets for 0 po files that are out of date building [man]: all manpages updating environment: [new config] 3 added, 0 changed, 0 removed reading sources... [ 33%] dcm2niibatch reading sources... [ 66%] dcm2niix reading sources... [100%] index looking for now-outdated files... none found pickling environment... done checking consistency... done writing... dcm2niix.1 { } dcm2niibatch.1 { } done build succeeded, 1 warning. The manual pages are in build/man. make[1]: Leaving directory '/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102' dh_auto_test -a -O--sourcedirectory=console -O--buildsystem=cmake create-stamp debian/debhelper-build-stamp dh_testroot -a -O--sourcedirectory=console -O--buildsystem=cmake dh_prep -a -O--sourcedirectory=console -O--buildsystem=cmake dh_auto_install -a -O--sourcedirectory=console -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j4 install DESTDIR=/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/debian/dcm2niix AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/console -B/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/debian/dcm2niix/usr/bin/dcm2niix -- Installing: /build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/debian/dcm2niix/usr/bin/dcm2niibatch make[1]: Leaving directory '/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102/obj-x86_64-linux-gnu' dh_installdocs -a -O--sourcedirectory=console -O--buildsystem=cmake debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102' dh_installchangelogs VERSIONS.md make[1]: Leaving directory '/build/dcm2niix-P6KU2G/dcm2niix-1.0.20201102' dh_installman -a -O--sourcedirectory=console -O--buildsystem=cmake dh_installsystemduser -a -O--sourcedirectory=console -O--buildsystem=cmake dh_perl -a -O--sourcedirectory=console -O--buildsystem=cmake dh_link -a -O--sourcedirectory=console -O--buildsystem=cmake dh_strip_nondeterminism -a -O--sourcedirectory=console -O--buildsystem=cmake dh_compress -a -O--sourcedirectory=console -O--buildsystem=cmake dh_fixperms -a -O--sourcedirectory=console -O--buildsystem=cmake dh_missing -a -O--sourcedirectory=console -O--buildsystem=cmake dh_dwz -a -a -O--sourcedirectory=console -O--buildsystem=cmake dh_strip -a -a -O--sourcedirectory=console -O--buildsystem=cmake dh_makeshlibs -a -a -O--sourcedirectory=console -O--buildsystem=cmake dh_shlibdeps -a -a -O--sourcedirectory=console -O--buildsystem=cmake dh_installdeb -a -O--sourcedirectory=console -O--buildsystem=cmake dh_gencontrol -a -O--sourcedirectory=console -O--buildsystem=cmake dh_md5sums -a -O--sourcedirectory=console -O--buildsystem=cmake dh_builddeb -a -O--sourcedirectory=console -O--buildsystem=cmake dpkg-deb: building package 'dcm2niix' in '../dcm2niix_1.0.20201102-1_amd64.deb'. dpkg-deb: building package 'dcm2niix-dbgsym' in '../dcm2niix-dbgsym_1.0.20201102-1_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../dcm2niix_1.0.20201102-1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/dcm2niix-P6KU2G /tmp/dcm2niix-1.0.20201102-11xbh2sdd I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.vjsBww91UW... I: success in 817.3784 seconds md5: dcm2niix-dbgsym_1.0.20201102-1_amd64.deb: OK md5: dcm2niix_1.0.20201102-1_amd64.deb: OK sha1: dcm2niix-dbgsym_1.0.20201102-1_amd64.deb: OK sha1: dcm2niix_1.0.20201102-1_amd64.deb: OK sha256: dcm2niix-dbgsym_1.0.20201102-1_amd64.deb: OK sha256: dcm2niix_1.0.20201102-1_amd64.deb: OK Checksums: OK