Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/c/cd-hit/cd-hit_4.8.1-4_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/cd-hit-4.8.1-4uk27tahn/cd-hit_4.8.1-4_amd64.buildinfo Get source package info: cd-hit=4.8.1-4 Source URL: http://snapshot.notset.fr/mr/package/cd-hit/4.8.1-4/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-14 automake=1:1.16.4-1 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=11.1 base-passwd=3.5.51 bash=5.1-3+b1 binutils=2.37-4 binutils-common=2.37-4 binutils-x86-64-linux-gnu=2.37-4 bsdextrautils=2.36.1-8 bsdutils=1:2.36.1-8 build-essential=12.9 bzip2=1.0.8-4 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.2.1-6 dash=0.5.11+git20210120+802ebd4-1 debconf=1.5.77 debhelper=13.4+nmu1 debianutils=5.1-1 dh-autoreconf=20 dh-strip-nondeterminism=1.12.0-1 diffutils=1:3.7-5 dpkg=1.20.9 dpkg-dev=1.20.9 dwz=0.14-1 file=1:5.39-3 findutils=4.8.0-1 g++=4:10.2.1-1 g++-10=10.2.1-6 gcc=4:10.2.1-1 gcc-10=10.2.1-6 gcc-10-base=10.2.1-6 gcc-11-base=11.2.0-2 gettext=0.21-4 gettext-base=0.21-4 grep=3.6-1 groff-base=1.22.4-6 gzip=1.10-4 help2man=1.48.4 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-10 libarchive-zip-perl=1.68-1 libasan6=11.2.0-2 libatomic1=11.2.0-2 libattr1=1:2.4.48-6 libaudit-common=1:3.0.5-1 libaudit1=1:3.0.5-1 libbinutils=2.37-4 libblkid1=2.36.1-8 libbz2-1.0=1.0.8-4 libc-bin=2.31-16 libc-dev-bin=2.31-16 libc6=2.31-16 libc6-dev=2.31-16 libcap-ng0=0.7.9-2.2+b1 libcc1-0=11.2.0-2 libcom-err2=1.46.2-2 libcrypt-dev=1:4.4.25-1 libcrypt1=1:4.4.25-1 libctf-nobfd0=2.37-4 libctf0=2.37-4 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.260 libdebhelper-perl=13.4+nmu1 libdpkg-perl=1.20.9 libelf1=0.185-2 libfile-stripnondeterminism-perl=1.12.0-1 libgcc-10-dev=10.2.1-6 libgcc-s1=11.2.0-2 libgcrypt20=1.8.7-6 libgdbm-compat4=1.19-2 libgdbm6=1.19-2 libgmp10=2:6.2.1+dfsg-1 libgomp1=11.2.0-2 libgpg-error0=1.38-2 libgssapi-krb5-2=1.18.3-6 libicu67=67.1-7 libisl23=0.23-1 libitm1=11.2.0-2 libk5crypto3=1.18.3-6 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-6 libkrb5support0=1.18.3-6 liblocale-gettext-perl=1.07-4+b1 liblsan0=11.2.0-2 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmount1=2.36.1-8 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libpam-modules=1.4.0-9 libpam-modules-bin=1.4.0-9 libpam-runtime=1.4.0-9 libpam0g=1.4.0-9 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.1-5 libpipeline1=1.5.3-1 libquadmath0=11.2.0-2 libseccomp2=2.5.1-1 libselinux1=3.1-3 libsigsegv2=2.13-1 libsmartcols1=2.36.1-8 libssl1.1=1.1.1k-1 libstdc++-10-dev=10.2.1-6 libstdc++6=11.2.0-2 libsub-override-perl=0.09-2 libsystemd0=247.9-1 libtinfo6=6.2+20201114-2 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtsan0=11.2.0-2 libubsan1=11.2.0-2 libuchardet0=0.0.7-1 libudev1=247.9-1 libunistring2=0.9.10-6 libuuid1=2.36.1-8 libxml2=2.9.10+dfsg-6.7 libzstd1=1.4.8+dfsg-2.1 linux-libc-dev=5.10.46-4 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-2 mawk=1.3.4.20200120-2 ncurses-base=6.2+20201114-2 ncurses-bin=6.2+20201114-2 patch=2.7.6-7 perl=5.32.1-5 perl-base=5.32.1-5 perl-modules-5.32=5.32.1-5 po-debconf=1.0.21+nmu1 rpcsvc-proto=1.4.2-3 sed=4.7-1 sensible-utils=0.0.14 sysvinit-utils=2.96-7 tar=1.34+dfsg-1 util-linux=2.36.1-8 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210822T144048Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210822T144048Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210818T205324Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d cd-hit=4.8.1-4 && mkdir -p /build/cd-hit-1pDHHV && dpkg-source --no-check -x /*.dsc /build/cd-hit-1pDHHV/cd-hit-4.8.1 && chown -R builduser:builduser /build/cd-hit-1pDHHV" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/cd-hit-1pDHHV/cd-hit-4.8.1 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1629448796" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/cd-hit-1pDHHV /tmp/cd-hit-4.8.1-4uk27tahn bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20210818T205324Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.rmM2nmHCmE as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.rmM2nmHCmE Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-8). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210818T205324Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210818T205324Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (830 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4665 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-16) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210822T144048Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210822T144048Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210818T205324Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.rmM2nmHCmE Get:1 http://snapshot.notset.fr/archive/debian/20210822T144048Z bookworm InRelease [94.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20210818T205324Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210822T144048Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210822T144048Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210822T144048Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210822T144048Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210822T144048Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210822T144048Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210822T144048Z bookworm/main Sources [11.5 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210822T144048Z bookworm/main amd64 Packages [11.2 MB] Fetched 22.8 MB in 19s (1195 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.rmM2nmHCmE I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d cd-hit=4.8.1-4 && mkdir -p /build/cd-hit-1pDHHV && dpkg-source --no-check -x /*.dsc /build/cd-hit-1pDHHV/cd-hit-4.8.1 && chown -R builduser:builduser /build/cd-hit-1pDHHV"' exec /tmp/mmdebstrap.rmM2nmHCmE Reading package lists... NOTICE: 'cd-hit' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/cd-hit.git Please use: git clone https://salsa.debian.org/med-team/cd-hit.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 956 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210822T144048Z bookworm/main cd-hit 4.8.1-4 (dsc) [2032 B] Get:2 http://snapshot.notset.fr/archive/debian/20210822T144048Z bookworm/main cd-hit 4.8.1-4 (tar) [946 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210822T144048Z bookworm/main cd-hit 4.8.1-4 (diff) [8128 B] Fetched 956 kB in 1s (1142 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'cd-hit_4.8.1-4.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting cd-hit in /build/cd-hit-1pDHHV/cd-hit-4.8.1 dpkg-source: info: unpacking cd-hit_4.8.1.orig.tar.gz dpkg-source: info: unpacking cd-hit_4.8.1-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying enable_help2man.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/cd-hit-1pDHHV/cd-hit-4.8.1 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1629448796" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.rmM2nmHCmE dpkg-buildpackage: info: source package cd-hit dpkg-buildpackage: info: source version 4.8.1-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j10 clean make[1]: Entering directory '/build/cd-hit-1pDHHV/cd-hit-4.8.1' rm -f *.o cd-hit cd-hit-est cd-hit-2d cd-hit-est-2d cd-hit-div cd-hit-454 make[1]: Leaving directory '/build/cd-hit-1pDHHV/cd-hit-4.8.1' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/build/cd-hit-1pDHHV/cd-hit-4.8.1' dh_auto_build -- openmp=yes CC='$(CXX)' make -j10 "INSTALL=install --strip-program=true" openmp=yes CC=\$\(CXX\) make[2]: Entering directory '/build/cd-hit-1pDHHV/cd-hit-4.8.1' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/build/cd-hit-1pDHHV/cd-hit-4.8.1=. -fstack-protector-strong -Wformat -Werror=format-security cdhit-common.c++ -c g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/build/cd-hit-1pDHHV/cd-hit-4.8.1=. -fstack-protector-strong -Wformat -Werror=format-security cdhit-utility.c++ -c g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/build/cd-hit-1pDHHV/cd-hit-4.8.1=. -fstack-protector-strong -Wformat -Werror=format-security cdhit.c++ -c g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/build/cd-hit-1pDHHV/cd-hit-4.8.1=. -fstack-protector-strong -Wformat -Werror=format-security cdhit-est.c++ -c g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/build/cd-hit-1pDHHV/cd-hit-4.8.1=. -fstack-protector-strong -Wformat -Werror=format-security cdhit-2d.c++ -c g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/build/cd-hit-1pDHHV/cd-hit-4.8.1=. -fstack-protector-strong -Wformat -Werror=format-security cdhit-est-2d.c++ -c g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/build/cd-hit-1pDHHV/cd-hit-4.8.1=. -fstack-protector-strong -Wformat -Werror=format-security cdhit-div.c++ -c g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/build/cd-hit-1pDHHV/cd-hit-4.8.1=. -fstack-protector-strong -Wformat -Werror=format-security cdhit-454.c++ -c cdhit-common.c++:322:16: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 322 | strcpy( date, __DATE__ ); | ^~~~~~~~ cdhit-common.c++:326:66: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 326 | printf( "Program: CD-HIT, V" CDHIT_VERSION WITH_OPENMP ", %s, " __TIME__ "\n", date ); | ^~~~~~~~ cdhit-utility.c++:9:79: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 9 | char cd_hit_ver[] = "\t\t====== CD-HIT version " CDHIT_VERSION " (built on " __DATE__ ") ======"; | ^~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/build/cd-hit-1pDHHV/cd-hit-4.8.1=. -fstack-protector-strong -Wformat -Werror=format-security cdhit.o cdhit-common.o cdhit-utility.o -Wl,-z,relro -Wl,-z,now -lz -o cd-hit g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/build/cd-hit-1pDHHV/cd-hit-4.8.1=. -fstack-protector-strong -Wformat -Werror=format-security cdhit-est.o cdhit-common.o cdhit-utility.o -Wl,-z,relro -Wl,-z,now -lz -o cd-hit-est g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/build/cd-hit-1pDHHV/cd-hit-4.8.1=. -fstack-protector-strong -Wformat -Werror=format-security cdhit-2d.o cdhit-common.o cdhit-utility.o -Wl,-z,relro -Wl,-z,now -lz -o cd-hit-2d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/build/cd-hit-1pDHHV/cd-hit-4.8.1=. -fstack-protector-strong -Wformat -Werror=format-security cdhit-est-2d.o cdhit-common.o cdhit-utility.o -Wl,-z,relro -Wl,-z,now -lz -o cd-hit-est-2d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/build/cd-hit-1pDHHV/cd-hit-4.8.1=. -fstack-protector-strong -Wformat -Werror=format-security cdhit-div.o cdhit-common.o cdhit-utility.o -Wl,-z,relro -Wl,-z,now -lz -o cd-hit-div g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/build/cd-hit-1pDHHV/cd-hit-4.8.1=. -fstack-protector-strong -Wformat -Werror=format-security cdhit-454.o cdhit-common.o cdhit-utility.o -Wl,-z,relro -Wl,-z,now -lz -o cd-hit-454 make[2]: Leaving directory '/build/cd-hit-1pDHHV/cd-hit-4.8.1' make[1]: Leaving directory '/build/cd-hit-1pDHHV/cd-hit-4.8.1' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_installdirs -a debian/rules override_dh_auto_install make[1]: Entering directory '/build/cd-hit-1pDHHV/cd-hit-4.8.1' dh_auto_install -- PREFIX=debian/cd-hit/usr/lib/cd-hit make -j10 install DESTDIR=/build/cd-hit-1pDHHV/cd-hit-4.8.1/debian/cd-hit AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" PREFIX=debian/cd-hit/usr/lib/cd-hit make[2]: Entering directory '/build/cd-hit-1pDHHV/cd-hit-4.8.1' for prog in cd-hit cd-hit-est cd-hit-2d cd-hit-est-2d cd-hit-div cd-hit-454; do \ install -m 0755 $prog debian/cd-hit/usr/lib/cd-hit; \ done install -m 0755 *.pl debian/cd-hit/usr/lib/cd-hit; make[2]: Leaving directory '/build/cd-hit-1pDHHV/cd-hit-4.8.1' make[1]: Leaving directory '/build/cd-hit-1pDHHV/cd-hit-4.8.1' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a debian/rules override_dh_installman make[1]: Entering directory '/build/cd-hit-1pDHHV/cd-hit-4.8.1' mkdir -p /build/cd-hit-1pDHHV/cd-hit-4.8.1/debian/cd-hit/usr/share/man/man1/ help2man --no-info --no-discard-stderr --version-string='4.8.1' \ --name='quickly group sequences' \ /build/cd-hit-1pDHHV/cd-hit-4.8.1/cd-hit > /build/cd-hit-1pDHHV/cd-hit-4.8.1/debian/cd-hit/usr/share/man/man1//cd-hit.1 help2man --no-info --no-discard-stderr --version-string='4.8.1' \ --name='quickly group sequences, optimised for 454 data' \ /build/cd-hit-1pDHHV/cd-hit-4.8.1/cd-hit-454 > /build/cd-hit-1pDHHV/cd-hit-4.8.1/debian/cd-hit/usr/share/man/man1//cd-hit-454.1 help2man --no-info --no-discard-stderr --version-string='4.8.1' \ --name='quickly group sequences in db1 or db2 format' \ /build/cd-hit-1pDHHV/cd-hit-4.8.1/cd-hit-2d > /build/cd-hit-1pDHHV/cd-hit-4.8.1/debian/cd-hit/usr/share/man/man1//cd-hit-2d.1 help2man --no-info --no-discard-stderr --version-string='4.8.1' \ --name='run CD-HIT algorithm on RNA/DNA sequences' \ /build/cd-hit-1pDHHV/cd-hit-4.8.1/cd-hit-est > /build/cd-hit-1pDHHV/cd-hit-4.8.1/debian/cd-hit/usr/share/man/man1//cd-hit-est.1 help2man --no-info --no-discard-stderr --version-string='4.8.1' \ --name='run CD-HIT algorithm on RNA/DNA sequences in db1 or db2 format' \ /build/cd-hit-1pDHHV/cd-hit-4.8.1/cd-hit-est-2d > /build/cd-hit-1pDHHV/cd-hit-4.8.1/debian/cd-hit/usr/share/man/man1//cd-hit-est-2d.1 help2man --no-info --no-discard-stderr --version-string='4.8.1' \ --name='divide a big clustering job into pieces to run cd-hit-2d or cd-hit-est-2d jobs' \ /build/cd-hit-1pDHHV/cd-hit-4.8.1/cd-hit-2d-para.pl > /build/cd-hit-1pDHHV/cd-hit-4.8.1/debian/cd-hit/usr/share/man/man1//cd-hit-2d-para.1 help2man --no-info --no-discard-stderr --version-string='4.8.1' \ --name='divide a big clustering job into pieces to run cd-hit or cd-hit-est jobs' \ /build/cd-hit-1pDHHV/cd-hit-4.8.1/cd-hit-para.pl > /build/cd-hit-1pDHHV/cd-hit-4.8.1/debian/cd-hit/usr/share/man/man1//cd-hit-para.1 help2man --no-info --no-discard-stderr --version-string='4.8.1' \ --name='divide a FASTA file into pieces' \ /build/cd-hit-1pDHHV/cd-hit-4.8.1/cd-hit-div.pl > /build/cd-hit-1pDHHV/cd-hit-4.8.1/debian/cd-hit/usr/share/man/man1//cd-hit-div.1 # psi-cd-hit.pl is throwing some errors which are fixed using sed # ... at least in versions <= 4.6.4 - now help2man does not work at all #help2man --no-info --no-discard-stderr --version-string='4.8.1' \ # --name='runs similar algorithm like CD-HIT but using BLAST to calculate similarities' \ # /build/cd-hit-1pDHHV/cd-hit-4.8.1/psi-cd-hit.pl | \ # sed -e '/^Name "main::.*" used only once:/d' \ # > /build/cd-hit-1pDHHV/cd-hit-4.8.1/debian/cd-hit/usr/share/man/man1//psi-cd-hit.1 # help2man does not work at all since version 4.6.4 #help2man --no-info --no-discard-stderr --version-string='4.8.1' \ # --name='runs similar algorithm like CD-HIT but using BLAST to calculate similarities in db1 or db2 format' \ # /build/cd-hit-1pDHHV/cd-hit-4.8.1/psi-cd-hit-2d.pl > /build/cd-hit-1pDHHV/cd-hit-4.8.1/debian/cd-hit/usr/share/man/man1//psi-cd-hit-2d.1 # FIXME: what is the difference between psi-cd-hit-2d.pl and psi-cd-hit-2d-g1.pl ? # help2man does not work at all since version 4.6.4 #help2man --no-info --no-discard-stderr --version-string='4.8.1' \ # --name='runs similar algorithm like CD-HIT but using BLAST to calculate similarities in db1 or db2 format' \ # /build/cd-hit-1pDHHV/cd-hit-4.8.1/psi-cd-hit-2d-g1.pl > /build/cd-hit-1pDHHV/cd-hit-4.8.1/debian/cd-hit/usr/share/man/man1//psi-cd-hit-2d-g1.1 # No help output from # clstr2tree.pl # clstr_merge.pl # clstr_merge_noorder.pl # clstr_reduce.pl # clstr_renumber.pl # clstr_rev.pl # clstr_sort_by.pl # clstr_sort_prot_by # make_multi_seq # psi-cd-hit-local.pl -> even throws several "used only once: possible typo" errors make[1]: Leaving directory '/build/cd-hit-1pDHHV/cd-hit-4.8.1' dh_perl -a dh_link -a dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/build/cd-hit-1pDHHV/cd-hit-4.8.1' dh_compress --exclude=.pdf make[1]: Leaving directory '/build/cd-hit-1pDHHV/cd-hit-4.8.1' dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'cd-hit' in '../cd-hit_4.8.1-4_amd64.deb'. dpkg-deb: building package 'cd-hit-dbgsym' in '../cd-hit-dbgsym_4.8.1-4_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../cd-hit_4.8.1-4_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/cd-hit-1pDHHV /tmp/cd-hit-4.8.1-4uk27tahn I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.rmM2nmHCmE... I: success in 1412.2355 seconds md5: cd-hit-dbgsym_4.8.1-4_amd64.deb: OK md5: cd-hit_4.8.1-4_amd64.deb: OK sha1: cd-hit-dbgsym_4.8.1-4_amd64.deb: OK sha1: cd-hit_4.8.1-4_amd64.deb: OK sha256: cd-hit-dbgsym_4.8.1-4_amd64.deb: OK sha256: cd-hit_4.8.1-4_amd64.deb: OK Checksums: OK