Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/c/cct/cct_1.0.3-1_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/cct-1.0.3-1wy83cyem/cct_1.0.3-1_all.buildinfo Get source package info: cct=1:1.0.3-1 Source URL: http://snapshot.notset.fr/mr/package/cct/1:1.0.3-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.5-1.1 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.52 bash=5.1-6 binutils=2.37.50.20220106-2 binutils-common=2.37.50.20220106-2 binutils-x86-64-linux-gnu=2.37.50.20220106-2 bsdextrautils=2.37.2-6 bsdutils=1:2.37.2-6 build-essential=12.9 bzip2=1.0.8-5 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-13 dash=0.5.11+git20210903+057cd650a4ed-3 debconf=1.5.79 debhelper=13.6 debianutils=5.5-1 dh-autoreconf=20 dh-strip-nondeterminism=1.13.0-1 diffutils=1:3.7-5 dpkg=1.21.1 dpkg-dev=1.21.1 dwz=0.14-1 file=1:5.41-2 findutils=4.8.0-1 g++=4:11.2.0-2 g++-11=11.2.0-13 gcc=4:11.2.0-2 gcc-11=11.2.0-13 gcc-11-base=11.2.0-13 gettext=0.21-4 gettext-base=0.21-4 grep=3.7-1 groff-base=1.22.4-8 gzip=1.10-4 hostname=3.23 init-system-helpers=1.61 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libarchive-zip-perl=1.68-1 libasan6=11.2.0-13 libatomic1=11.2.0-13 libattr1=1:2.5.1-1 libaudit-common=1:3.0.6-1 libaudit1=1:3.0.6-1+b1 libbinutils=2.37.50.20220106-2 libblkid1=2.37.2-6 libbz2-1.0=1.0.8-5 libc-bin=2.33-2 libc-dev-bin=2.33-2 libc6=2.33-2 libc6-dev=2.33-2 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcc1-0=11.2.0-13 libcom-err2=1.46.5-2 libcrypt-dev=1:4.4.27-1 libcrypt1=1:4.4.27-1 libctf-nobfd0=2.37.50.20220106-2 libctf0=2.37.50.20220106-2 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.261 libdebhelper-perl=13.6 libdpkg-perl=1.21.1 libelf1=0.186-1 libfile-stripnondeterminism-perl=1.13.0-1 libgcc-11-dev=11.2.0-13 libgcc-s1=11.2.0-13 libgcrypt20=1.9.4-5 libgdbm-compat4=1.22-1 libgdbm6=1.22-1 libgmp10=2:6.2.1+dfsg-3 libgomp1=11.2.0-13 libgpg-error0=1.43-1 libgssapi-krb5-2=1.18.3-7 libicu67=67.1-7 libisl23=0.24-2 libitm1=11.2.0-13 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 liblsan0=11.2.0-13 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.41-2 libmagic1=1:5.41-2 libmount1=2.37.2-6 libmpc3=1.2.1-1 libmpfr6=4.1.0-3 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libpam-modules=1.4.0-11 libpam-modules-bin=1.4.0-11 libpam-runtime=1.4.0-11 libpam0g=1.4.0-11 libpcre2-8-0=10.39-3 libpcre3=2:8.39-13 libperl5.32=5.32.1-6 libpipeline1=1.5.5-1 libquadmath0=11.2.0-13 libseccomp2=2.5.3-2 libselinux1=3.3-1+b1 libsigsegv2=2.13-1 libsmartcols1=2.37.2-6 libssl1.1=1.1.1m-1 libstdc++-11-dev=11.2.0-13 libstdc++6=11.2.0-13 libsub-override-perl=0.09-2 libsystemd0=250.2-1 libtinfo6=6.3-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtsan0=11.2.0-13 libubsan1=11.2.0-13 libuchardet0=0.0.7-1 libudev1=250.2-1 libunistring2=0.9.10-6 libuuid1=2.37.2-6 libxml2=2.9.12+dfsg-5+b1 libzstd1=1.4.8+dfsg-3 linux-libc-dev=5.15.5-2 login=1:4.8.1-2 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-4 mawk=1.3.4.20200120-2 ncurses-base=6.3-1 ncurses-bin=6.3-1 patch=2.7.6-7 perl=5.32.1-6 perl-base=5.32.1-6 perl-modules-5.32=5.32.1-6 po-debconf=1.0.21+nmu1 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.01-1 tar=1.34+dfsg-1 util-linux=2.37.2-6 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220119T025427Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220119T025427Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220112T215005Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d cct=1:1.0.3-1 && mkdir -p /build/cct-ejuV56 && dpkg-source --no-check -x /*.dsc /build/cct-ejuV56/cct-1.0.3 && chown -R builduser:builduser /build/cct-ejuV56" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/cct-ejuV56/cct-1.0.3 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1642340979" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/cct-ejuV56 /tmp/cct-1.0.3-1wy83cyem bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20220112T215005Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.gBoODSWhDZ as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.gBoODSWhDZ Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-6). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 135 kB of archives. After this operation, 406 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20220112T215005Z unstable/main amd64 libfakeroot amd64 1.26-1.2 [48.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220112T215005Z unstable/main amd64 fakeroot amd64 1.26-1.2 [87.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 135 kB in 0s (1012 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4681 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.26-1.2_amd64.deb ... Unpacking libfakeroot:amd64 (1.26-1.2) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.26-1.2_amd64.deb ... Unpacking fakeroot (1.26-1.2) ... Setting up libfakeroot:amd64 (1.26-1.2) ... Setting up fakeroot (1.26-1.2) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-2) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220119T025427Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220119T025427Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220112T215005Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.gBoODSWhDZ Get:1 http://snapshot.notset.fr/archive/debian/20220119T025427Z bookworm InRelease [129 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20220112T215005Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20220119T025427Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20220119T025427Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20220119T025427Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20220119T025427Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20220119T025427Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20220119T025427Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20220119T025427Z bookworm/main Sources [11.8 MB] Get:4 http://snapshot.notset.fr/archive/debian/20220119T025427Z bookworm/main amd64 Packages [11.2 MB] Fetched 23.1 MB in 20s (1174 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.gBoODSWhDZ I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d cct=1:1.0.3-1 && mkdir -p /build/cct-ejuV56 && dpkg-source --no-check -x /*.dsc /build/cct-ejuV56/cct-1.0.3 && chown -R builduser:builduser /build/cct-ejuV56"' exec /tmp/mmdebstrap.gBoODSWhDZ Reading package lists... NOTICE: 'cct' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/cct.git Please use: git clone https://salsa.debian.org/med-team/cct.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 81.7 MB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20220119T025427Z bookworm/main cct 1:1.0.3-1 (dsc) [1997 B] Get:2 http://snapshot.notset.fr/archive/debian/20220119T025427Z bookworm/main cct 1:1.0.3-1 (tar) [81.7 MB] Get:3 http://snapshot.notset.fr/archive/debian/20220119T025427Z bookworm/main cct 1:1.0.3-1 (diff) [11.7 kB] Fetched 81.7 MB in 1min 4s (1280 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'cct_1.0.3-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting cct in /build/cct-ejuV56/cct-1.0.3 dpkg-source: info: unpacking cct_1.0.3.orig.tar.xz dpkg-source: info: unpacking cct_1.0.3-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying cgview_path.patch dpkg-source: info: applying testscripts.patch dpkg-source: info: applying fix_cgview_path.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/cct-ejuV56/cct-1.0.3 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1642340979" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.gBoODSWhDZ dpkg-buildpackage: info: source package cct dpkg-buildpackage: info: source version 1:1.0.3-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . debian/rules clean dh clean dh_clean debian/rules binary-indep dh binary-indep dh_update_autotools_config -i dh_autoreconf -i create-stamp debian/debhelper-build-stamp dh_prep -i debian/rules override_dh_install make[1]: Entering directory '/build/cct-ejuV56/cct-1.0.3' dh_install mkdir -p debian/cct/usr/bin for scr in debian/cct/usr/share/cct/scripts/*.sh ; do \ binscr=`basename ${scr} .sh` ; \ ln -s /usr/share/cct/scripts/generic debian/cct/usr/bin/${binscr} ; \ done for scr in debian/cct/usr/share/cct/scripts/*.pl ; do \ binscr=`basename ${scr} .pl` ; \ ln -s /usr/share/cct/scripts/generic debian/cct/usr/bin/${binscr} ; \ done ln -s /etc/cct debian/cct/usr/share/cct/conf # Move "hidden" examples into example package for sample in `find debian -type d \( -name "sample_output" -o -name "test_input" \)` ; do \ base=`dirname ${sample} | sed 's#debian/cct#debian/cct-examples#'` ; \ mkdir -p ${base} ; \ mv ${sample} ${base} ; \ done for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done grep: debian/cct/usr/bin/build_blast_atlas: No such file or directory grep: debian/cct/usr/bin/build_blast_atlas_all_vs_all: No such file or directory grep: debian/cct/usr/bin/build_cog_db: No such file or directory grep: debian/cct/usr/bin/check_env: No such file or directory grep: debian/cct/usr/bin/create_zoomed_maps: No such file or directory grep: debian/cct/usr/bin/fetch_all_refseq_bacterial_genomes: No such file or directory grep: debian/cct/usr/bin/fetch_all_refseq_chloroplast_genomes: No such file or directory grep: debian/cct/usr/bin/fetch_all_refseq_mitochondrial_genomes: No such file or directory grep: debian/cct/usr/bin/fetch_genome_by_accession: No such file or directory grep: debian/cct/usr/bin/fetch_refseq_bacterial_genomes_by_name: No such file or directory grep: debian/cct/usr/bin/process_sample_projects: No such file or directory grep: debian/cct/usr/bin/process_test_projects: No such file or directory grep: debian/cct/usr/bin/redraw_maps: No such file or directory grep: debian/cct/usr/bin/remove_long_seqs: No such file or directory grep: debian/cct/usr/bin/remove_short_seqs: No such file or directory grep: debian/cct/usr/bin/cgview_comparison_tool: No such file or directory grep: debian/cct/usr/bin/convert_vcf_to_features: No such file or directory grep: debian/cct/usr/bin/ncbi_search: No such file or directory grep: debian/cct/usr/share/cct/conf: No such file or directory make[1]: Leaving directory '/build/cct-ejuV56/cct-1.0.3' dh_installdocs -i dh_installchangelogs -i dh_installman -i dh_perl -i dh_link -i dh_strip_nondeterminism -i dh_compress -i dh_fixperms -i dh_missing -i dh_installdeb -i dh_gencontrol -i dpkg-gencontrol: warning: Depends field of package cct-examples: substitution variable ${perl:Depends} used, but is not defined dh_md5sums -i dh_builddeb -i dpkg-deb: building package 'cct' in '../cct_1.0.3-1_all.deb'. dpkg-deb: building package 'cct-examples' in '../cct-examples_1.0.3-1_all.deb'. dpkg-genbuildinfo --build=all -O../cct_1.0.3-1_all.buildinfo dpkg-genchanges --build=all -O../cct_1.0.3-1_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/cct-ejuV56 /tmp/cct-1.0.3-1wy83cyem I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.gBoODSWhDZ... I: success in 452.9505 seconds md5: cct-examples_1.0.3-1_all.deb: OK md5: cct_1.0.3-1_all.deb: OK sha1: cct-examples_1.0.3-1_all.deb: OK sha1: cct_1.0.3-1_all.deb: OK sha256: cct-examples_1.0.3-1_all.deb: OK sha256: cct_1.0.3-1_all.deb: OK Checksums: OK