Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/c/cbflib/cbflib_0.9.6+dfsg1-3_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/cbflib-0.9.6+dfsg1-3il0kmbq9/cbflib_0.9.6+dfsg1-3_all.buildinfo Get source package info: cbflib=0.9.6+dfsg1-3 Source URL: http://snapshot.notset.fr/mr/package/cbflib/0.9.6+dfsg1-3/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.4-2 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.51 bash=5.1-3+b1 binutils=2.37-5 binutils-common=2.37-5 binutils-x86-64-linux-gnu=2.37-5 bsdextrautils=2.37.2-2 bsdutils=1:2.37.2-2 build-essential=12.9 bzip2=1.0.8-4 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.3.0-10 dash=0.5.11+git20210120+802ebd4-1 debconf=1.5.77 debhelper=13.5.1 debianutils=5.4-4 dh-autoreconf=20 dh-python=4.20201102+nmu1 dh-strip-nondeterminism=1.12.0-1 diffutils=1:3.7-5 dpkg=1.20.9 dpkg-dev=1.20.9 dwz=0.14-1 file=1:5.39-3 findutils=4.8.0-1 g++=4:10.2.1-1 g++-10=10.3.0-10 gcc=4:10.2.1-1 gcc-10=10.3.0-10 gcc-10-base=10.3.0-10 gcc-11-base=11.2.0-7 gettext=0.21-4 gettext-base=0.21-4 grep=3.7-1 groff-base=1.22.4-7 gzip=1.10-4 hdf5-helpers=1.10.7+repack-1 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libaec-dev=1.0.5-2 libaec0=1.0.5-2 libarchive-zip-perl=1.68-1 libasan6=11.2.0-7 libatomic1=11.2.0-7 libattr1=1:2.5.1-1 libaudit-common=1:3.0.5-1 libaudit1=1:3.0.5-1 libbinutils=2.37-5 libblkid1=2.37.2-2 libbz2-1.0=1.0.8-4 libc-bin=2.32-3 libc-dev-bin=2.32-3 libc6=2.32-3 libc6-dev=2.32-3 libcap-ng0=0.7.9-2.2+b1 libcc1-0=11.2.0-7 libcom-err2=1.46.4-1 libcrypt-dev=1:4.4.25-2 libcrypt1=1:4.4.25-2 libctf-nobfd0=2.37-5 libctf0=2.37-5 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.260 libdebhelper-perl=13.5.1 libdpkg-perl=1.20.9 libelf1=0.185-2 libexpat1=2.4.1-2+b1 libexpat1-dev=2.4.1-2+b1 libffi7=3.3-6 libfile-stripnondeterminism-perl=1.12.0-1 libgcc-10-dev=10.3.0-10 libgcc-s1=11.2.0-7 libgcrypt20=1.9.4-3 libgdbm-compat4=1.21-1 libgdbm6=1.21-1 libgfortran5=11.2.0-7 libglib2.0-0=2.68.4-1 libgmp10=2:6.2.1+dfsg-2 libgomp1=11.2.0-7 libgpg-error0=1.42-3 libgssapi-krb5-2=1.18.3-7 libhdf5-103-1=1.10.7+repack-1 libhdf5-cpp-103-1=1.10.7+repack-1 libhdf5-dev=1.10.7+repack-1 libhdf5-fortran-102=1.10.7+repack-1 libhdf5-hl-100=1.10.7+repack-1 libhdf5-hl-cpp-100=1.10.7+repack-1 libhdf5-hl-fortran-100=1.10.7+repack-1 libicu67=67.1-7 libisl23=0.23-1 libitm1=11.2.0-7 libjpeg-dev=1:2.0.6-4 libjpeg62-turbo=1:2.0.6-4 libjpeg62-turbo-dev=1:2.0.6-4 libjs-jquery=3.5.1+dfsg+~3.5.5-7 libjs-sphinxdoc=3.5.4-2 libjs-underscore=1.9.1~dfsg-4 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 liblsan0=11.2.0-7 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmount1=2.37.2-2 libmpc3=1.2.0-1 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libncursesw6=6.2+20210905-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libpam-modules=1.4.0-10 libpam-modules-bin=1.4.0-10 libpam-runtime=1.4.0-10 libpam0g=1.4.0-10 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.1-5 libpipeline1=1.5.3-1 libpython3-all-dev=3.9.2-3 libpython3-dev=3.9.2-3 libpython3-stdlib=3.9.2-3 libpython3.9=3.9.7-2 libpython3.9-dev=3.9.7-2 libpython3.9-minimal=3.9.7-2 libpython3.9-stdlib=3.9.7-2 libquadmath0=11.2.0-7 libreadline8=8.1-2 libseccomp2=2.5.2-1 libselinux1=3.1-3 libsigsegv2=2.13-1 libsmartcols1=2.37.2-2 libsqlite3-0=3.36.0-2 libssl1.1=1.1.1l-1 libstdc++-10-dev=10.3.0-10 libstdc++6=11.2.0-7 libsub-override-perl=0.09-2 libsystemd0=247.9-1 libsz2=1.0.5-2 libtinfo6=6.2+20210905-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtsan0=11.2.0-7 libubsan1=11.2.0-7 libuchardet0=0.0.7-1 libudev1=247.9-1 libunistring2=0.9.10-6 libuuid1=2.37.2-2 libxml2=2.9.12+dfsg-4 libzstd1=1.4.8+dfsg-2.1 linux-libc-dev=5.10.46-4 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-2 mawk=1.3.4.20200120-2 media-types=4.0.0 ncurses-base=6.2+20210905-1 ncurses-bin=6.2+20210905-1 patch=2.7.6-7 perl=5.32.1-5 perl-base=5.32.1-5 perl-modules-5.32=5.32.1-5 pkg-config=0.29.2-1 po-debconf=1.0.21+nmu1 python3=3.9.2-3 python3-all=3.9.2-3 python3-all-dev=3.9.2-3 python3-dev=3.9.2-3 python3-distutils=3.9.7-1 python3-lib2to3=3.9.7-1 python3-minimal=3.9.2-3 python3.9=3.9.7-2 python3.9-dev=3.9.7-2 python3.9-minimal=3.9.7-2 readline-common=8.1-2 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=2.96-7 tar=1.34+dfsg-1 tzdata=2021a-1 util-linux=2.37.2-2 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210925T024544Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210925T024544Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210924T084826Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210918T155259Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d cbflib=0.9.6+dfsg1-3 && mkdir -p /build/cbflib-2W7ULP && dpkg-source --no-check -x /*.dsc /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1 && chown -R builduser:builduser /build/cbflib-2W7ULP" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1632077744" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/cbflib-2W7ULP /tmp/cbflib-0.9.6+dfsg1-3il0kmbq9 bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20210918T155259Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.S36CuzEuNC as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.S36CuzEuNC Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-2). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210918T155259Z unstable/main amd64 libfakeroot amd64 1.26-1 [47.3 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210918T155259Z unstable/main amd64 fakeroot amd64 1.26-1 [87.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1068 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4664 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.26-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.26-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.26-1_amd64.deb ... Unpacking fakeroot (1.26-1) ... Setting up libfakeroot:amd64 (1.26-1) ... Setting up fakeroot (1.26-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.32-3) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210925T024544Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210925T024544Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210924T084826Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210918T155259Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.S36CuzEuNC Get:1 http://snapshot.notset.fr/archive/debian/20210925T024544Z bookworm InRelease [128 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210924T084826Z unstable InRelease [165 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20210918T155259Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210925T024544Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210925T024544Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210925T024544Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210925T024544Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210925T024544Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210925T024544Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210925T024544Z bookworm/main Sources [11.6 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210925T024544Z bookworm/main amd64 Packages [11.2 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20210924T084826Z unstable/main amd64 Packages Err:6 http://snapshot.notset.fr/archive/debian/20210924T084826Z unstable/main amd64 Packages 404 Not Found [IP: 10.13.0.253 80] Ign:6 http://snapshot.notset.fr/archive/debian/20210924T084826Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20210924T084826Z unstable/main amd64 Packages [11.9 MB] Fetched 35.0 MB in 29s (1197 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.S36CuzEuNC I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d cbflib=0.9.6+dfsg1-3 && mkdir -p /build/cbflib-2W7ULP && dpkg-source --no-check -x /*.dsc /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1 && chown -R builduser:builduser /build/cbflib-2W7ULP"' exec /tmp/mmdebstrap.S36CuzEuNC Reading package lists... NOTICE: 'cbflib' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/cbflib.git Please use: git clone https://salsa.debian.org/science-team/cbflib.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 5526 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210925T024544Z bookworm/main cbflib 0.9.6+dfsg1-3 (dsc) [2442 B] Get:2 http://snapshot.notset.fr/archive/debian/20210925T024544Z bookworm/main cbflib 0.9.6+dfsg1-3 (tar) [5499 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210925T024544Z bookworm/main cbflib 0.9.6+dfsg1-3 (diff) [24.9 kB] Fetched 5526 kB in 4s (1261 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'cbflib_0.9.6+dfsg1-3.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting cbflib in /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1 dpkg-source: info: unpacking cbflib_0.9.6+dfsg1.orig.tar.xz dpkg-source: info: unpacking cbflib_0.9.6+dfsg1-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-makefile-fix-Get-system-HDF5-config-from-pkg-config.patch dpkg-source: info: applying 0002-makefile-fix-Fix-CBFLIB_DONT_USE_LOCAL_TIFF-config-v.patch dpkg-source: info: applying 0003-makefile-fix-Allow-disabling-PyCBF-from-env-with-NOP.patch dpkg-source: info: applying 0004-makefile-fix-Install-libs-to-CBF_PREFIX-INSTALL_LIB.patch dpkg-source: info: applying 0005-makefile-fix-Install-lib-to-SOVERSION-and-add-symlin.patch dpkg-source: info: applying 0006-makefile-fix-Allow-disabling-libimg-and-libfcb-build.patch dpkg-source: info: applying 0007-trailing-spaces.patch dpkg-source: info: applying 0007-makefile-fix-Do-not-link-example-progs-w.-libimg.patch dpkg-source: info: applying 0008-makefile-fix-Add-SONAME-to-linker-flags.patch dpkg-source: info: applying 0009-makefile-fix-Pick-up-CFLAGS-and-LDFLAGS-from-the-env.patch dpkg-source: info: applying 0010-makefile-fix-Prepend-CPPFLAGS-value-to-CFLAGS.patch dpkg-source: info: applying 0011-makefile-fix-Add-LDFLAGS-to-SOLDFLAGS-to-pick-up-har.patch dpkg-source: info: applying 0013-makefile-deb-Use-DESTDIR-usr-as-CBF_PREFIX.patch dpkg-source: info: applying 0014-makefile-deb-Do-not-build-tiff2cbf.patch dpkg-source: info: applying 0016-cross.patch dpkg-source: info: applying 0016-add-missing-LdFLAG-to-cbf_testxfelread.patch dpkg-source: info: applying 0017-Added-an-extra_compile_args-to-setup.py.patch dpkg-source: info: applying 0018-fix-the-FTBFS-with-missing-m4-Makefile.m4.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1632077744" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.S36CuzEuNC dpkg-buildpackage: info: source package cbflib dpkg-buildpackage: info: source version 0.9.6+dfsg1-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Picca Frédéric-Emmanuel dpkg-source --before-build . debian/rules clean dh clean --no-parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1' dh_auto_clean make -j1 distclean make[2]: Entering directory '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1' ./.undosymlinks make[2]: Leaving directory '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1' /usr/bin/make 'C++:=$(CXX)' /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/pycbf/setup.py make[2]: Entering directory '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1' (m4 -P -Dregexlib= -Dregexlib2= \ -Dregexlibdir=/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/lib -Dhdf5_prefix=/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1 -Dextra_compile_args=-I/usr/include/hdf5/serial \ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/m4/setup_py.m4 > /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/pycbf/setup.py) make[2]: Leaving directory '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1' dh_auto_clean --buildsystem=pybuild --sourcedirectory=pycbf I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_pycbf/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it rm -f pycbf/setup.py make[1]: Leaving directory '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1' dh_autoreconf_clean -O--no-parallel dh_clean -O--no-parallel debian/rules binary-indep dh binary-indep --no-parallel dh_update_autotools_config -i -O--no-parallel dh_autoreconf -i -O--no-parallel debian/rules override_dh_auto_configure make[1]: Entering directory '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1' dh_auto_configure /usr/bin/make 'C++:=$(CXX)' /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/pycbf/setup.py make[2]: Entering directory '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1' (m4 -P -Dregexlib= -Dregexlib2= \ -Dregexlibdir=/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/lib -Dhdf5_prefix=/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1 -Dextra_compile_args=-I/usr/include/hdf5/serial \ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/m4/setup_py.m4 > /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/pycbf/setup.py) make[2]: Leaving directory '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1' dh_auto_configure --buildsystem=pybuild --sourcedirectory=pycbf I: pybuild base:232: python3.9 setup.py config running config make[1]: Leaving directory '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1' debian/rules override_dh_auto_build make[1]: Entering directory '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1' # build the C/C++ library dh_auto_build -- 'C++:=$(CXX)' all make -j1 "INSTALL=install --strip-program=true" C\+\+:=\$\(CXX\) all make[2]: Entering directory '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1' (cd /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_exit_binary.m4) > /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/fcb_exit_binary.f90 (cd /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_next_binary.m4) > /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/fcb_next_binary.f90 (cd /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_open_cifin.m4) > /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/fcb_open_cifin.f90 (cd /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_packed.m4) > /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/fcb_packed.f90 (cd /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_read_bits.m4) > /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/fcb_read_bits.f90 (cd /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_read_image.m4) > /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/fcb_read_image.f90 (cd /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_read_xds_i2.m4) > /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/fcb_read_xds_i2.f90 chmod a+x .symlinks chmod a+x .undosymlinks chmod a+x doc/.symlinks chmod a+x doc/.undosymlinks ./.symlinks --use_ln touch symlinksdone rm -f /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/lib/libcbf.a rm -f *.o mkdir -p /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/lib gcc -g -O2 -ffile-prefix-map=/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -DCBF_REGEXLIB_REGEX \ -DCBF_FILTER_STATIC -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial -c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_airy_disk.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_alloc.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_ascii.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_binary.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_byte_offset.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_canonical.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_codes.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_compress.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_context.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_copy.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_file.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_getopt.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5_filter.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_lex.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_nibble_offset.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_packed.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_predictor.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_read_binary.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_read_mime.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_simple.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_string.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_stx.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_tree.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_uncompressed.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_write.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_write_binary.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_ws.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbff.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/md5c.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/img.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/fgetln.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf.c: In function ‘cbf_convert_dictionary_definition’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf.c:5474:22: warning: ‘itemname’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5474 | cbf_failnez( cbf_set_hashedvalue (cbfdictionary, itemname, "name", -1)) | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf.c:266: In function ‘strncpy’, inlined from ‘cbf_validate’ at /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf.c:7605:6: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘cbf_validate’ at /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf.c:7686:25: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_context.c:262: In function ‘strncpy’, inlined from ‘cbf_copy_string’ at /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_context.c:937:21: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_context.c: In function ‘cbf_copy_string’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_context.c:909:13: note: length computed here 909 | n = strlen(string); | ^~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_context.c:262: In function ‘strncpy’, inlined from ‘cbf_copy_string’ at /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_context.c:922:21: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_context.c: In function ‘cbf_copy_string’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_context.c:909:13: note: length computed here 909 | n = strlen(string); | ^~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_nx2cbf__cbfcat_op’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20819:38: warning: implicit declaration of function ‘cbf_read_h5file_group’; did you mean ‘cbf_read_h5file’? [-Wimplicit-function-declaration] 20819 | error |= cbf_read_h5file_group(cbf,nx,nx->flags,(hid_t)object); | ^~~~~~~~~~~~~~~~~~~~~ | cbf_read_h5file /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20811:48: warning: unused variable ‘indent’ [-Wunused-variable] 20811 | const unsigned int indent = table->indent; | ^~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20784:31: warning: unused variable ‘nxpdb_found’ [-Wunused-variable] 20784 | const int nxpdb_found = _cbf_Attrval(object,"NXpdb_class", &NXpdb_class); | ^~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_nx2cbf__cbfdb_op’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20933:48: warning: unused variable ‘indent’ [-Wunused-variable] 20933 | const unsigned int indent = table->indent; | ^~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20906:31: warning: unused variable ‘nxpdb_found’ [-Wunused-variable] 20906 | const int nxpdb_found = _cbf_Attrval(object,"NXpdb_class", &NXpdb_class); | ^~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_nx2cbf__entry_op’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:21797:48: warning: unused variable ‘indent’ [-Wunused-variable] 21797 | const unsigned int indent = table->indent; | ^~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:21716:31: warning: unused variable ‘nxpdb_found’ [-Wunused-variable] 21716 | const int nxpdb_found = _cbf_Attrval(object,"NXpdb_class", &NXpdb_class); | ^~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_nx2cbf’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22516:36: warning: variable ‘node’ set but not used [-Wunused-but-set-variable] 22516 | cbf_node * node = NULL; | ^~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22769:25: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 22769 | if (pixel_offset_name[i]) free((void*)pixel_offset_name[i]);pixel_offset_name[i]=NULL; | ^~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22769:85: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 22769 | if (pixel_offset_name[i]) free((void*)pixel_offset_name[i]);pixel_offset_name[i]=NULL; | ^~~~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22770:25: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 22770 | if (pixel_offset_long_name[i]) free((void*)pixel_offset_long_name[i]);pixel_offset_long_name[i]=NULL; | ^~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22770:95: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 22770 | if (pixel_offset_long_name[i]) free((void*)pixel_offset_long_name[i]);pixel_offset_long_name[i]=NULL; | ^~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22771:25: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 22771 | if (pixel_size_name[i]) free((void*)pixel_size_name[i]);pixel_size_name[i]=NULL; | ^~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22771:81: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 22771 | if (pixel_size_name[i]) free((void*)pixel_size_name[i]);pixel_size_name[i]=NULL; | ^~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22110:30: warning: variable ‘data_row’ set but not used [-Wunused-but-set-variable] 22110 | unsigned int data_row = ~0x0; | ^~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22836:32: warning: variable ‘diffrn_scan_axis’ set but not used [-Wunused-but-set-variable] 22836 | cbf_node * diffrn_scan_axis = NULL; | ^~~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_cbf2nx__array_structure_list_axis’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:26493:50: warning: unused variable ‘rotation_axis_path’ [-Wunused-variable] 26493 | const char * rotation_axis_path = NULL; | ^~~~~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_cbf2nx__cbf_general_axes’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:26704:26: warning: unused variable ‘equipment_component’ [-Wunused-variable] 26704 | const char * equipment_component = NULL; | ^~~~~~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_cbf2nx__axis’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:27034:28: warning: variable ‘axis_rotation_axis’ set but not used [-Wunused-but-set-variable] 27034 | cbf_node * axis_rotation_axis = NULL; | ^~~~~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_h5ds_store_as_column’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:29166:40: warning: unused variable ‘close’ [-Wunused-variable] 29166 | char open, close; | ^~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:29166:34: warning: unused variable ‘open’ [-Wunused-variable] 29166 | char open, close; | ^~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:28931:21: warning: variable ‘type_order’ set but not used [-Wunused-but-set-variable] 28931 | H5T_order_t type_order; | ^~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:28925:16: warning: unused variable ‘byte_order’ [-Wunused-variable] 28925 | char * byte_order; | ^~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:28903:14: warning: unused variable ‘buffer’ [-Wunused-variable] 28903 | char buffer[25]; | ^~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_object_visit’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30752:42: warning: variable ‘checked_digest’ set but not used [-Wunused-but-set-variable] 30752 | int binary_id, bits, sign, type, checked_digest, realarray = 0; | ^~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30752:36: warning: variable ‘type’ set but not used [-Wunused-but-set-variable] 30752 | int binary_id, bits, sign, type, checked_digest, realarray = 0; | ^~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30708:32: warning: variable ‘atcbf’ set but not used [-Wunused-but-set-variable] 30708 | int save_incbf, incbf, atcbf; /* within or at NXpdb or CBF_cif, etc. */ | ^~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30707:36: warning: unused variable ‘atnexus’ [-Wunused-variable] 30707 | int save_innexus, innexus, atnexus; /* within or at NXentry */ | ^~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_read_h5file_group’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:31937:13: warning: unused variable ‘errorcode’ [-Wunused-variable] 31937 | int errorcode = 0; | ^~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:31933:19: warning: unused variable ‘node’ [-Wunused-variable] 31933 | cbf_node *node; | ^~~~ At top level: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20853:16: warning: ‘cbf_write_nx2cbf__cbfdb_op’ defined but not used [-Wunused-function] 20853 | static int cbf_write_nx2cbf__cbfdb_op | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20641:16: warning: ‘cbf_write_nx2cbf__cbfcat_op’ defined but not used [-Wunused-function] 20641 | static int cbf_write_nx2cbf__cbfcat_op | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:9133:16: warning: ‘cbf_require_nxdetectors’ defined but not used [-Wunused-function] 9133 | static int cbf_require_nxdetectors(const cbf_handle handle, | ^~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_get_nxdata_field_name2.isra’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:6345:37: warning: ‘%06d’ directive writing between 6 and 10 bytes into a region of size 7 [-Wformat-overflow=] 6345 | sprintf(buffer,"%06d",block); | ^~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:6345:36: note: directive argument in the range [1, 2147483647] 6345 | sprintf(buffer,"%06d",block); | ^~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/hdf5/serial/H5Epublic.h:20, from /usr/include/hdf5/serial/hdf5.h:26, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:258: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 7 and 11 bytes into a destination of size 7 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include/cbf_hdf5.h:265, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:260: In function ‘strncat’, inlined from ‘cbf_create_h5handle2’ at /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:17932:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 10 bytes from a string of length 11 [-Wstringop-truncation] 122 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘cbf_create_h5handle2’ at /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:17934:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 50 bytes from a string of length 53 [-Wstringop-truncation] 122 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘cbf_create_h5handle2u’ at /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:18014:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 10 bytes from a string of length 11 [-Wstringop-truncation] 122 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘cbf_create_h5handle2u’ at /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:18016:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 50 bytes from a string of length 53 [-Wstringop-truncation] 122 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_nx2cbf’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:23197:42: warning: ‘offset[2]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 23197 | CBF_CALL(cbf_set_doublevalue(cbf,"%.15g",offset[2])); | ^~~~~~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:23195:42: warning: ‘offset[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 23195 | CBF_CALL(cbf_set_doublevalue(cbf,"%.15g",offset[1])); | ^~~~~~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:23193:42: warning: ‘offset’ may be used uninitialized in this function [-Wmaybe-uninitialized] 23193 | CBF_CALL(cbf_set_doublevalue(cbf,"%.15g",offset[0])); | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include/cbf_minicbf_header.h:264, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:259: In function ‘strncpy’, inlined from ‘cbf_append_string.part.0’ at /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:325:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c: In function ‘cbf_append_string.part.0’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:302:18: note: length computed here 302 | srclen = strlen(src); | ^~~~~~~~~~~ In file included from /usr/include/string.h:519, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include/cbf_minicbf_header.h:264, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:259: In function ‘strncpy’, inlined from ‘cbf_append_string’ at /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:325:9, inlined from ‘cbf_append_string’ at /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:293:16, inlined from ‘cbf_set_minicbf_header’ at /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:429:13: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 1 byte from a string of the same length [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_nibble_offset.c: In function ‘cbf_compress_nibble_offset’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_nibble_offset.c:936:21: warning: ‘dmode[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 936 | curmode = dmode[inrun]; | ~~~~~~~~^~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_simple.c: In function ‘cbf_set_reference_beam_center’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_simple.c:8587:44: warning: variable ‘ncenter2’ set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_simple.c:8587:34: warning: variable ‘ncenter1’ set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_stx.c: In function ‘cbf_lex_wrapper’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_stx.c:370:13: warning: variable ‘cbffile’ set but not used [-Wunused-but-set-variable] 370 | cbf_file *cbffile; | ^~~~~~~ At top level: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_stx.c:827:26: warning: ‘yytname’ defined but not used [-Wunused-const-variable=] 827 | static const char *const yytname[] = | ^~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/img.c: In function ‘img_read_mar345header’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/img.c:1334:44: warning: array subscript -1 is outside array bounds of ‘char[65]’ [-Warray-bounds] 1334 | for (C = C64+strlen(C64)-1; (C != C64-1 && *C == ' '); C-- ) *C = '\0'; | ~~~^~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/img.c:1230:8: note: while referencing ‘C64’ 1230 | char C64[65], D64[65], *C, *D, *E; | ^~~ In file included from /usr/include/string.h:519, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/img.c:12: In function ‘memcpy’, inlined from ‘img_set_tags’ at /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/img.c:1784:7, inlined from ‘img_set_tags’ at /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/img.c:1761:5, inlined from ‘img_free_handle’ at /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/img.c:1844:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:29:10: warning: ‘__builtin___memcpy_chk’ writing between 18446744039349813248 and 18446744073709551600 bytes into a region of size 0 [-Wstringop-overflow=] 29 | return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/img.c: In function ‘img_free_handle’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/img.c:1773:28: note: at offset 0 to an object with size 0 allocated by ‘malloc’ here 1773 | img->tag = (img_tag *) malloc (tags * sizeof (img_tag)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/ar cr /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/lib/libcbf.a *.o /usr/bin/ranlib /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/lib/libcbf.a rm -f *.o mkdir -p /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c -L/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/adscimg2cbf In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:1: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c: In function ‘main’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:245:27: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 245 | strstrhit = cbf_cistrnstr(argv[iarg], flags[j], strlen(flags[j])); | ^ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:176:10: warning: unused variable ‘thickness’ [-Wunused-variable] 176 | double thickness=0.; | ^~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:162:7: warning: variable ‘cbf_status’ set but not used [-Wunused-but-set-variable] 162 | int cbf_status; | ^~~~~~~~~~ In file included from /usr/include/string.h:519, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:13: In function ‘strncpy’, inlined from ‘gethd.constprop’ at /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:31:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c: In function ‘gethd.constprop’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:28:7: note: length computed here 28 | l = strlen (field); | ^~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5public.h:35, from /usr/include/hdf5/serial/hdf5.h:22, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:177: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c: In function ‘adscimg2cbf_sub2’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:793:20: warning: passing argument 1 of ‘convertroi’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 793 | if (convertroi(roi, smv_size1, smv_size2, | ^~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:433:22: note: expected ‘char *’ but argument is of type ‘const char *’ 433 | int convertroi(char *roi, int fastdim, int slowdim, | ~~~~~~^~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:1727:27: warning: passing argument 1 of ‘cbf_free_text’ from incompatible pointer type [-Wincompatible-pointer-types] 1727 | cbf_free_text(&log,NULL); | ^~~~ | | | char ** In file included from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include/cbf_minicbf_header.h:262, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:179: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include/cbf_alloc.h:274:33: note: expected ‘const char **’ but argument is of type ‘char **’ 274 | int cbf_free_text (const char **old_block, size_t *old_nelem); | ~~~~~~~~~~~~~^~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:1868:30: warning: variable ‘valmax’ set but not used [-Wunused-but-set-variable] 1868 | double valnew,valmin,valmax; | ^~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:1868:16: warning: variable ‘valnew’ set but not used [-Wunused-but-set-variable] 1868 | double valnew,valmin,valmax; | ^~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:530:27: warning: unused variable ‘kjcm’ [-Wunused-variable] 530 | int ki, kj, kicm, kjcm; | ^~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:530:21: warning: unused variable ‘kicm’ [-Wunused-variable] 530 | int ki, kj, kicm, kjcm; | ^~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:522:28: warning: variable ‘smv_bin_type’ set but not used [-Wunused-but-set-variable] 522 | int smv_bin, smv_adc, smv_bin_type; | ^~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c: In function ‘adscimg2cbf_sub’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:2075:34: warning: passing argument 4 of ‘adscimg2cbf_sub2’ makes integer from pointer without a cast [-Wint-conversion] 2075 | NULL,NULL,NULL,NULL, | ^~~~ | | | void * /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:481:29: note: expected ‘size_t’ {aka ‘long unsigned int’} but argument is of type ‘void *’ 481 | size_t old_int_data_size, | ~~~~~~~^~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include/cbf_minicbf_header.h:264, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:179: In function ‘strncpy’, inlined from ‘gethd.constprop’ at /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:263:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c: In function ‘gethd.constprop’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:260:7: note: length computed here 260 | l = strlen (field); | ^~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c: In function ‘adscimg2cbf_sub2’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:588:29: warning: ‘; ’ directive writing 2 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 588 | sprintf(temp, "%s=%s;\n", s, s1); | ^~~ In file included from /usr/include/stdio.h:866, from /usr/include/hdf5/serial/H5Epublic.h:20, from /usr/include/hdf5/serial/hdf5.h:26, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:177: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 4 or more bytes (assuming 1027) into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:1846:53: warning: ‘smooth_data_as_int’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1846 | if (ki > 0 && smooth_data_as_int[(ki-1)*(1+fasthigh-fastlow+fastpadlow+fastpadhigh)/(bin+1)+kj] > 0) { | ^ mkdir -p /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/arvai_test.c -L/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/arvai_test mkdir -p /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/cbf2adscimg.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c -L/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/cbf2adscimg In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/cbf2adscimg.c:1: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/string.h:519, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/cbf2adscimg.c:3: In function ‘strncpy’, inlined from ‘gethd’ at /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/cbf2adscimg.c:21:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/cbf2adscimg.c: In function ‘gethd’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/cbf2adscimg.c:18:7: note: length computed here 18 | l = strlen (field); | ^~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5public.h:35, from /usr/include/hdf5/serial/hdf5.h:22, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:126: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c: In function ‘padhd’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:217:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 217 | for ( hp=header; *hp != '}'; hp++); hp++; | ^~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:217:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 217 | for ( hp=header; *hp != '}'; hp++); hp++; | ^~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c: In function ‘cbfhandle2img_sub’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:247:57: warning: variable ‘dirinc’ set but not used [-Wunused-but-set-variable] 247 | int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; | ^~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:247:46: warning: variable ‘dirend’ set but not used [-Wunused-but-set-variable] 247 | int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; | ^~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:247:35: warning: variable ‘dirsta’ set but not used [-Wunused-but-set-variable] 247 | int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; | ^~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:247:28: warning: variable ‘second’ set but not used [-Wunused-but-set-variable] 247 | int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; | ^~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:247:21: warning: variable ‘first’ set but not used [-Wunused-but-set-variable] 247 | int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; | ^~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:247:13: warning: variable ‘colrow’ set but not used [-Wunused-but-set-variable] 247 | int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; | ^~~~~~ mkdir -p /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/cbf2nexus.c -L/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/cbf2nexus mkdir -p /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin g -O2 -ffile-prefix-map=/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/cif2c.c -L/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/cif2c bash: line 1: g: command not found make[2]: [Makefile:1771: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/cif2c] Error 127 (ignored) rm -f /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/solib/libcbf.so rm -f *.o mkdir -p /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/solib gcc -g -O2 -ffile-prefix-map=/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -DCBF_REGEXLIB_REGEX -fPIC -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial -c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_airy_disk.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_alloc.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_ascii.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_binary.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_byte_offset.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_canonical.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_codes.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_compress.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_context.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_copy.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_file.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_getopt.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5_filter.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_lex.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_nibble_offset.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_packed.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_predictor.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_read_binary.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_read_mime.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_simple.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_string.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_stx.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_tree.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_uncompressed.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_write.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_write_binary.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_ws.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbff.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/md5c.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/img.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/fgetln.c In file included from /usr/include/string.h:519, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf.c:266: In function ‘strncpy’, inlined from ‘cbf_validate’ at /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf.c:7605:6: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘cbf_validate’ at /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf.c:7686:25: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_context.c:262: In function ‘strncpy’, inlined from ‘cbf_copy_string’ at /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_context.c:937:21: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_context.c: In function ‘cbf_copy_string’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_context.c:909:13: note: length computed here 909 | n = strlen(string); | ^~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_context.c:262: In function ‘strncpy’, inlined from ‘cbf_copy_string’ at /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_context.c:922:21: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_context.c: In function ‘cbf_copy_string’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_context.c:909:13: note: length computed here 909 | n = strlen(string); | ^~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_nx2cbf__cbfcat_op’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20819:38: warning: implicit declaration of function ‘cbf_read_h5file_group’; did you mean ‘cbf_read_h5file’? [-Wimplicit-function-declaration] 20819 | error |= cbf_read_h5file_group(cbf,nx,nx->flags,(hid_t)object); | ^~~~~~~~~~~~~~~~~~~~~ | cbf_read_h5file /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20811:48: warning: unused variable ‘indent’ [-Wunused-variable] 20811 | const unsigned int indent = table->indent; | ^~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20784:31: warning: unused variable ‘nxpdb_found’ [-Wunused-variable] 20784 | const int nxpdb_found = _cbf_Attrval(object,"NXpdb_class", &NXpdb_class); | ^~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_nx2cbf__cbfdb_op’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20933:48: warning: unused variable ‘indent’ [-Wunused-variable] 20933 | const unsigned int indent = table->indent; | ^~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20906:31: warning: unused variable ‘nxpdb_found’ [-Wunused-variable] 20906 | const int nxpdb_found = _cbf_Attrval(object,"NXpdb_class", &NXpdb_class); | ^~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_nx2cbf__entry_op’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:21797:48: warning: unused variable ‘indent’ [-Wunused-variable] 21797 | const unsigned int indent = table->indent; | ^~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:21716:31: warning: unused variable ‘nxpdb_found’ [-Wunused-variable] 21716 | const int nxpdb_found = _cbf_Attrval(object,"NXpdb_class", &NXpdb_class); | ^~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_nx2cbf’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22516:36: warning: variable ‘node’ set but not used [-Wunused-but-set-variable] 22516 | cbf_node * node = NULL; | ^~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22769:25: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 22769 | if (pixel_offset_name[i]) free((void*)pixel_offset_name[i]);pixel_offset_name[i]=NULL; | ^~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22769:85: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 22769 | if (pixel_offset_name[i]) free((void*)pixel_offset_name[i]);pixel_offset_name[i]=NULL; | ^~~~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22770:25: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 22770 | if (pixel_offset_long_name[i]) free((void*)pixel_offset_long_name[i]);pixel_offset_long_name[i]=NULL; | ^~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22770:95: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 22770 | if (pixel_offset_long_name[i]) free((void*)pixel_offset_long_name[i]);pixel_offset_long_name[i]=NULL; | ^~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22771:25: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 22771 | if (pixel_size_name[i]) free((void*)pixel_size_name[i]);pixel_size_name[i]=NULL; | ^~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22771:81: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 22771 | if (pixel_size_name[i]) free((void*)pixel_size_name[i]);pixel_size_name[i]=NULL; | ^~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22110:30: warning: variable ‘data_row’ set but not used [-Wunused-but-set-variable] 22110 | unsigned int data_row = ~0x0; | ^~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22836:32: warning: variable ‘diffrn_scan_axis’ set but not used [-Wunused-but-set-variable] 22836 | cbf_node * diffrn_scan_axis = NULL; | ^~~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_cbf2nx__array_structure_list_axis’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:26493:50: warning: unused variable ‘rotation_axis_path’ [-Wunused-variable] 26493 | const char * rotation_axis_path = NULL; | ^~~~~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_cbf2nx__cbf_general_axes’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:26704:26: warning: unused variable ‘equipment_component’ [-Wunused-variable] 26704 | const char * equipment_component = NULL; | ^~~~~~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_cbf2nx__axis’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:27034:28: warning: variable ‘axis_rotation_axis’ set but not used [-Wunused-but-set-variable] 27034 | cbf_node * axis_rotation_axis = NULL; | ^~~~~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_h5ds_store_as_column’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:29166:40: warning: unused variable ‘close’ [-Wunused-variable] 29166 | char open, close; | ^~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:29166:34: warning: unused variable ‘open’ [-Wunused-variable] 29166 | char open, close; | ^~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:28931:21: warning: variable ‘type_order’ set but not used [-Wunused-but-set-variable] 28931 | H5T_order_t type_order; | ^~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:28925:16: warning: unused variable ‘byte_order’ [-Wunused-variable] 28925 | char * byte_order; | ^~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:28903:14: warning: unused variable ‘buffer’ [-Wunused-variable] 28903 | char buffer[25]; | ^~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_object_visit’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30752:42: warning: variable ‘checked_digest’ set but not used [-Wunused-but-set-variable] 30752 | int binary_id, bits, sign, type, checked_digest, realarray = 0; | ^~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30752:36: warning: variable ‘type’ set but not used [-Wunused-but-set-variable] 30752 | int binary_id, bits, sign, type, checked_digest, realarray = 0; | ^~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30708:32: warning: variable ‘atcbf’ set but not used [-Wunused-but-set-variable] 30708 | int save_incbf, incbf, atcbf; /* within or at NXpdb or CBF_cif, etc. */ | ^~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30707:36: warning: unused variable ‘atnexus’ [-Wunused-variable] 30707 | int save_innexus, innexus, atnexus; /* within or at NXentry */ | ^~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_read_h5file_group’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:31937:13: warning: unused variable ‘errorcode’ [-Wunused-variable] 31937 | int errorcode = 0; | ^~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:31933:19: warning: unused variable ‘node’ [-Wunused-variable] 31933 | cbf_node *node; | ^~~~ At top level: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20853:16: warning: ‘cbf_write_nx2cbf__cbfdb_op’ defined but not used [-Wunused-function] 20853 | static int cbf_write_nx2cbf__cbfdb_op | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20641:16: warning: ‘cbf_write_nx2cbf__cbfcat_op’ defined but not used [-Wunused-function] 20641 | static int cbf_write_nx2cbf__cbfcat_op | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:9133:16: warning: ‘cbf_require_nxdetectors’ defined but not used [-Wunused-function] 9133 | static int cbf_require_nxdetectors(const cbf_handle handle, | ^~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_get_nxdata_field_name2.isra’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:6345:37: warning: ‘%06d’ directive writing between 6 and 10 bytes into a region of size 7 [-Wformat-overflow=] 6345 | sprintf(buffer,"%06d",block); | ^~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:6345:36: note: directive argument in the range [1, 2147483647] 6345 | sprintf(buffer,"%06d",block); | ^~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/hdf5/serial/H5Epublic.h:20, from /usr/include/hdf5/serial/hdf5.h:26, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:258: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 7 and 11 bytes into a destination of size 7 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include/cbf_hdf5.h:265, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:260: In function ‘strncat’, inlined from ‘cbf_create_h5handle2’ at /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:17932:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 10 bytes from a string of length 11 [-Wstringop-truncation] 122 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘cbf_create_h5handle2’ at /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:17934:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 50 bytes from a string of length 53 [-Wstringop-truncation] 122 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘cbf_create_h5handle2u’ at /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:18014:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 10 bytes from a string of length 11 [-Wstringop-truncation] 122 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘cbf_create_h5handle2u’ at /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:18016:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 50 bytes from a string of length 53 [-Wstringop-truncation] 122 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include/cbf_minicbf_header.h:264, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:259: In function ‘strncpy’, inlined from ‘cbf_append_string.part.0’ at /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:325:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c: In function ‘cbf_append_string.part.0’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:302:18: note: length computed here 302 | srclen = strlen(src); | ^~~~~~~~~~~ In file included from /usr/include/string.h:519, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include/cbf_minicbf_header.h:264, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:259: In function ‘strncpy’, inlined from ‘cbf_append_string’ at /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:325:9, inlined from ‘cbf_append_string’ at /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:293:16, inlined from ‘cbf_set_minicbf_header’ at /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:429:13: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 1 byte from a string of the same length [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_nibble_offset.c: In function ‘cbf_compress_nibble_offset’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_nibble_offset.c:936:21: warning: ‘dmode[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 936 | curmode = dmode[inrun]; | ~~~~~~~~^~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_simple.c: In function ‘cbf_set_reference_beam_center’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_simple.c:8587:44: warning: variable ‘ncenter2’ set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_simple.c:8587:34: warning: variable ‘ncenter1’ set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_stx.c: In function ‘cbf_lex_wrapper’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_stx.c:370:13: warning: variable ‘cbffile’ set but not used [-Wunused-but-set-variable] 370 | cbf_file *cbffile; | ^~~~~~~ At top level: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/cbf_stx.c:827:26: warning: ‘yytname’ defined but not used [-Wunused-const-variable=] 827 | static const char *const yytname[] = | ^~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/img.c: In function ‘img_read_mar345header’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/img.c:1334:44: warning: array subscript -1 is outside array bounds of ‘char[65]’ [-Warray-bounds] 1334 | for (C = C64+strlen(C64)-1; (C != C64-1 && *C == ' '); C-- ) *C = '\0'; | ~~~^~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/img.c:1230:8: note: while referencing ‘C64’ 1230 | char C64[65], D64[65], *C, *D, *E; | ^~~ gcc -o /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/solib/libcbf.so *.o -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname -Wl,libcbf.so.1 -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 rm -f *.o mkdir -p /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/cif2cbf.c -L/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/cif2cbf In file included from /usr/include/string.h:519, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include/cbf_hdf5.h:265, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/cif2cbf.c:465: In function ‘strncpy’, inlined from ‘main’ at /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/cif2cbf.c:2015:25: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/cif2cbf.c: In function ‘main’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/cif2cbf.c:2012:28: note: length computed here 2012 | dbsz = strlen(datablock_name+idb); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/cbf_standardize_numbers.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/fgetln.c -lm -o /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/cbf_standardize_numbers In file included from /usr/include/hdf5/serial/H5public.h:35, from /usr/include/hdf5/serial/hdf5.h:22, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/cbf_standardize_numbers.c:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/cbf_standardize_numbers.c: In function ‘main’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/cbf_standardize_numbers.c:60:24: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=] 60 | sprintf(format,"%%.%dg ",(digits>0)?digits+1:0); | ^~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/cbf_standardize_numbers.c:60:20: note: directive argument in the range [0, 2147483647] 60 | sprintf(format,"%%.%dg ",(digits>0)?digits+1:0); | ^~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/hdf5/serial/H5Epublic.h:20, from /usr/include/hdf5/serial/hdf5.h:26, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/cbf_standardize_numbers.c:9: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 6 and 15 bytes into a destination of size 10 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/fgetln.c:30: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mkdir -p /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/convert_image.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/img.c -L/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/convert_image /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/convert_image.c: In function ‘main’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/convert_image.c:533:7: warning: variable ‘transpose’ set but not used [-Wunused-but-set-variable] 533 | int transpose; | ^~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/img.c: In function ‘img_read_mar345header’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/img.c:1334:44: warning: array subscript -1 is outside array bounds of ‘char[65]’ [-Warray-bounds] 1334 | for (C = C64+strlen(C64)-1; (C != C64-1 && *C == ' '); C-- ) *C = '\0'; | ~~~^~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/img.c:1230:8: note: while referencing ‘C64’ 1230 | char C64[65], D64[65], *C, *D, *E; | ^~~ In file included from /usr/include/string.h:519, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/img.c:12: In function ‘memcpy’, inlined from ‘img_set_tags’ at /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/img.c:1784:7, inlined from ‘img_set_tags’ at /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/img.c:1761:5, inlined from ‘img_free_handle’ at /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/img.c:1844:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:29:10: warning: ‘__builtin___memcpy_chk’ writing between 18446744039349813248 and 18446744073709551600 bytes into a region of size 0 [-Wstringop-overflow=] 29 | return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/img.c: In function ‘img_free_handle’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src/img.c:1773:28: note: at offset 0 to an object with size 0 allocated by ‘malloc’ here 1773 | img->tag = (img_tag *) malloc (tags * sizeof (img_tag)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/ld: /tmp/cc9oJ1Kt.o: in function `main': ././examples/convert_image.c:672: warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' mkdir -p /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/convert_minicbf.c -L/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/convert_minicbf chmod 755 /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/batch_convert_minicbf.sh mkdir -p /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/img2cif.c -L/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/img2cif gcc -g -O2 -ffile-prefix-map=/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/makecbf.c -L/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/makecbf gcc -g -O2 -ffile-prefix-map=/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/minicbf2nexus.c -L/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/minicbf2nexus mkdir -p /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/nexus2cbf.c -L/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/nexus2cbf mkdir -p /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/roi_peaksearch.c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/dps_peaksearch.c -L/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/roi_peaksearch mkdir -p /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/sequence_match.c -L/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/sequence_match mkdir -p /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin g -O2 -ffile-prefix-map=/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/testcell.C -L/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/testcell bash: line 1: g: command not found make[2]: [Makefile:1762: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/testcell] Error 127 (ignored) mkdir -p /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/testalloc.c -L/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/lib /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/lib/libcbf.a -lm -o /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/testalloc.tmp mv /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/testalloc.tmp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/testalloc mkdir -p /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/testreals.c -L/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/testreals mkdir -p /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/testflat.c -L/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/testflat mkdir -p /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/testflatpacked.c -L/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/testflatpacked mkdir -p /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/testhdf5.c -L/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/lib /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/lib/libcbf.a -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/testhdf5.tmp mv /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/testhdf5.tmp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/testhdf5 mkdir -p /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/test_cbf_airy_disk.c -L/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/lib /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/lib/libcbf.a -lm -o /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/test_cbf_airy_disk.tmp mv /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/test_cbf_airy_disk.tmp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/test_cbf_airy_disk mkdir -p /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/cbf_testxfelread.c -L/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/lib /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/lib/libcbf.a -lm -o /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/cbf_testxfelread.tmp mv /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/cbf_testxfelread.tmp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/cbf_testxfelread make[2]: Leaving directory '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1' # build the python extension. /usr/bin/make 'C++:=$(CXX)' /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/pycbf/setup.py make[2]: Entering directory '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1' make[2]: '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/pycbf/setup.py' is up to date. make[2]: Leaving directory '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1' dh_auto_build --buildsystem=pybuild --sourcedirectory=pycbf I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py copying pycbf.py -> /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_pycbf/build running build_ext building '_pycbf' extension creating build creating build/src creating build/temp.linux-x86_64-3.9 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include -I/usr/include/python3.9 -c ../src/cbf_simple.c -o build/temp.linux-x86_64-3.9/../src/cbf_simple.o -I/usr/include/hdf5/serial ../src/cbf_simple.c: In function ‘cbf_set_reference_beam_center’: ../src/cbf_simple.c:8587:44: warning: variable ‘ncenter2’ set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ ../src/cbf_simple.c:8587:34: warning: variable ‘ncenter1’ set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include -I/usr/include/python3.9 -c pycbf_wrap.c -o build/temp.linux-x86_64-3.9/pycbf_wrap.o -I/usr/include/hdf5/serial pycbf_wrap.c: In function ‘cbf_handle_struct_set_image’: pycbf_wrap.c:4074:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4074 | void *array; | ^~~~~ pycbf_wrap.c:4072:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4072 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_realarray_wdims’: pycbf_wrap.c:4289:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4289 | void *array; | ^~~~~ pycbf_wrap.c:4288:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 4288 | size_t els, ele; | ^~~ pycbf_wrap.c:4288:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4288 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_3d_image_fs’: pycbf_wrap.c:4383:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4383 | void *array; | ^~~~~ pycbf_wrap.c:4381:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4381 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_3d_image_sf’: pycbf_wrap.c:4418:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4418 | void *array; | ^~~~~ pycbf_wrap.c:4416:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4416 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_image_fs’: pycbf_wrap.c:4460:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4460 | void *array; | ^~~~~ pycbf_wrap.c:4458:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4458 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_3d_image’: pycbf_wrap.c:4611:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4611 | void *array; | ^~~~~ pycbf_wrap.c:4609:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4609 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_integerarray_wdims_sf’: pycbf_wrap.c:4634:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4634 | void *array; | ^~~~~ pycbf_wrap.c:4633:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 4633 | size_t els, ele; | ^~~ pycbf_wrap.c:4633:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4633 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_3d_image’: pycbf_wrap.c:4782:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4782 | void *array; | ^~~~~ pycbf_wrap.c:4780:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4780 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_integerarray_wdims’: pycbf_wrap.c:4832:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4832 | void *array; | ^~~~~ pycbf_wrap.c:4831:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 4831 | size_t els, ele; | ^~~ pycbf_wrap.c:4831:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4831 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_image_fs’: pycbf_wrap.c:4908:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4908 | void *array; | ^~~~~ pycbf_wrap.c:4906:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4906 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_image_sf’: pycbf_wrap.c:5004:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5004 | void *array; | ^~~~~ pycbf_wrap.c:5002:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5002 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_realarray_wdims_sf’: pycbf_wrap.c:5060:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5060 | void *array; | ^~~~~ pycbf_wrap.c:5059:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5059 | size_t els, ele; | ^~~ pycbf_wrap.c:5059:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5059 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_image’: pycbf_wrap.c:5091:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5091 | void *array; | ^~~~~ pycbf_wrap.c:5089:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5089 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_3d_image_sf’: pycbf_wrap.c:5147:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5147 | void *array; | ^~~~~ pycbf_wrap.c:5145:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5145 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_integerarray’: pycbf_wrap.c:5223:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5223 | void *array; | ^~~~~ pycbf_wrap.c:5222:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5222 | size_t els, ele; | ^~~ pycbf_wrap.c:5222:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5222 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_realarray’: pycbf_wrap.c:5295:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5295 | void *array; | ^~~~~ pycbf_wrap.c:5294:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5294 | size_t els, ele; | ^~~ pycbf_wrap.c:5294:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5294 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_3d_image_fs’: pycbf_wrap.c:5380:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5380 | void *array; | ^~~~~ pycbf_wrap.c:5378:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5378 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_realarray_wdims_fs’: pycbf_wrap.c:5422:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5422 | void *array; | ^~~~~ pycbf_wrap.c:5421:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5421 | size_t els, ele; | ^~~ pycbf_wrap.c:5421:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5421 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_integerarray_wdims_fs’: pycbf_wrap.c:5447:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5447 | void *array; | ^~~~~ pycbf_wrap.c:5446:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5446 | size_t els, ele; | ^~~ pycbf_wrap.c:5446:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5446 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_image_sf’: pycbf_wrap.c:5468:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5468 | void *array; | ^~~~~ pycbf_wrap.c:5466:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5466 | size_t els; | ^~~ At top level: pycbf_wrap.c:3469:16: warning: ‘convert_iarray’ defined but not used [-Wunused-function] 3469 | static int convert_iarray(PyObject *input, int *ptr, int size) { | ^~~~~~~~~~~~~~ pycbf_wrap.c:3445:17: warning: ‘convert_larray’ defined but not used [-Wunused-function] 3445 | static long convert_larray(PyObject *input, long *ptr, int size) { | ^~~~~~~~~~~~~~ pycbf_wrap.c: In function ‘get_error_message’: pycbf_wrap.c:3510:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3510 | sprintf(error_message,"%s %s",error_message,"CBF_FORMAT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3512:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3512 | sprintf(error_message,"%s %s",error_message,"CBF_ALLOC "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3514:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3514 | sprintf(error_message,"%s %s",error_message,"CBF_ARGUMENT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3516:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3516 | sprintf(error_message,"%s %s",error_message,"CBF_ASCII "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3518:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3518 | sprintf(error_message,"%s %s",error_message,"CBF_BINARY "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3520:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3520 | sprintf(error_message,"%s %s",error_message,"CBF_BITCOUNT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3522:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3522 | sprintf(error_message,"%s %s",error_message,"CBF_ENDOFDATA "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3524:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3524 | sprintf(error_message,"%s %s",error_message,"CBF_FILECLOSE "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3526:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3526 | sprintf(error_message,"%s %s",error_message,"CBF_FILEOPEN "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3528:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3528 | sprintf(error_message,"%s %s",error_message,"CBF_FILEREAD "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3530:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3530 | sprintf(error_message,"%s %s",error_message,"CBF_FILESEEK "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3532:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3532 | sprintf(error_message,"%s %s",error_message,"CBF_FILETELL "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3534:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3534 | sprintf(error_message,"%s %s",error_message,"CBF_FILEWRITE "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3536:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3536 | sprintf(error_message,"%s %s",error_message,"CBF_IDENTICAL "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3538:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3538 | sprintf(error_message,"%s %s",error_message,"CBF_NOTFOUND "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3540:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3540 | sprintf(error_message,"%s %s",error_message,"CBF_OVERFLOW "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3542:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3542 | sprintf(error_message,"%s %s",error_message,"CBF_UNDEFINED "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3544:31: warning: ‘%s’ directive writing 18 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3544 | sprintf(error_message,"%s %s",error_message,"CBF_NOTIMPLEMENTED"); | ^~ ~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 20 and 1043 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3546:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3546 | sprintf(error_message,"%s %s",error_message,"CBF_NOCOMPRESSION"); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /usr/include/python3.9/Python.h:30, from pycbf_wrap.c:149: In function ‘strncpy’, inlined from ‘cbf_handle_struct_get_integerarrayparameters_wdims_sf’ at pycbf_wrap.c:4980:9, inlined from ‘_wrap_cbf_handle_struct_get_integerarrayparameters_wdims_sf’ at pycbf_wrap.c:16981:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c: In function ‘_wrap_cbf_handle_struct_get_integerarrayparameters_wdims_sf’: pycbf_wrap.c:4978:18: note: length computed here 4978 | *bolen = strlen(byteorder); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /usr/include/python3.9/Python.h:30, from pycbf_wrap.c:149: In function ‘strncpy’, inlined from ‘cbf_handle_struct_get_realarrayparameters_wdims_sf’ at pycbf_wrap.c:4366:9, inlined from ‘_wrap_cbf_handle_struct_get_realarrayparameters_wdims_sf’ at pycbf_wrap.c:12615:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c: In function ‘_wrap_cbf_handle_struct_get_realarrayparameters_wdims_sf’: pycbf_wrap.c:4364:18: note: length computed here 4364 | *bolen = strlen(byteorder); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /usr/include/python3.9/Python.h:30, from pycbf_wrap.c:149: In function ‘strncpy’, inlined from ‘SWIG_Python_FixMethods’ at pycbf_wrap.c:29493:15, inlined from ‘PyInit__pycbf’ at pycbf_wrap.c:29593:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 10 bytes from a string of the same length [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/../src/cbf_simple.o build/temp.linux-x86_64-3.9/pycbf_wrap.o -L../solib/ -L../lib/ -L/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/lib -lcbf -o /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_pycbf/build/_pycbf.cpython-39-x86_64-linux-gnu.so make[1]: Leaving directory '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1' create-stamp debian/debhelper-build-stamp dh_testroot -i -O--no-parallel dh_prep -i -O--no-parallel debian/rules override_dh_auto_install make[1]: Entering directory '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1' # install the C/C++ library dh_auto_install make -j1 install DESTDIR=/build/cbflib-2W7ULP/cbflib-0.9.6\+dfsg1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1' mkdir -p /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin g++ -g -O2 -ffile-prefix-map=/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/cif2c.c -L/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/cif2c mkdir -p /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/cif2cbf.c -L/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/cif2cbf In file included from /usr/include/string.h:519, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include/cbf_hdf5.h:265, from /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/cif2cbf.c:465: In function ‘strncpy’, inlined from ‘main’ at /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/cif2cbf.c:2015:25: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/cif2cbf.c: In function ‘main’: /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/cif2cbf.c:2012:28: note: length computed here 2012 | dbsz = strlen(datablock_name+idb); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin g++ -g -O2 -ffile-prefix-map=/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include -I/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/testcell.C -L/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/testcell mkdir -p /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr mkdir -p /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu mkdir -p /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin mkdir -p /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/include mkdir -p /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib # # libcbf # chmod 755 /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.a chmod: cannot access '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.a': No such file or directory make[2]: [Makefile:1101: baseinstall] Error 1 (ignored) cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.a /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf_old.a cp: cannot stat '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.a': No such file or directory make[2]: [Makefile:1102: baseinstall] Error 1 (ignored) cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/lib/libcbf.a /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.a #-chmod 755 /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so #-cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf_old.so cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/solib/libcbf.so /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so.1.0.0 ln -s -r -f /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so.1.0.0 /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so.1 ln -s -r -f /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so.1.0.0 /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so #ln -s -f /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/lib_cbf.so chmod 644 /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.a chmod 755 /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so # # includes # chmod -R 755 /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib chmod -R 755 /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib rm -rf /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib_old cp -r /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib_old rm -rf /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib cp -r /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/include /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib chmod 644 /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib/*.h # # libfcb # # # libimg # # # programs # cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/adscimg2cbf /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/adscimg2cbf_old cp: cannot stat '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/adscimg2cbf': No such file or directory make[2]: [Makefile:1131: baseinstall] Error 1 (ignored) cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/adscimg2cbf /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/adscimg2cbf cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2adscimg /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2adscimg_old cp: cannot stat '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2adscimg': No such file or directory make[2]: [Makefile:1133: baseinstall] Error 1 (ignored) cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/cbf2adscimg /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2adscimg cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers \ /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers_old cp: cannot stat '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers': No such file or directory make[2]: [Makefile:1135: baseinstall] Error 1 (ignored) cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/cbf_standardize_numbers /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_image /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_image_old cp: cannot stat '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_image': No such file or directory make[2]: [Makefile:1137: baseinstall] Error 1 (ignored) cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/convert_image /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_image cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_minicbf /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_minicbf_old cp: cannot stat '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_minicbf': No such file or directory make[2]: [Makefile:1139: baseinstall] Error 1 (ignored) cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/convert_minicbf /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_minicbf cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/makecbf /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/makecbf_old cp: cannot stat '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/makecbf': No such file or directory make[2]: [Makefile:1141: baseinstall] Error 1 (ignored) cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/makecbf /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/makecbf cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/img2cif /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/img2cif_old cp: cannot stat '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/img2cif': No such file or directory make[2]: [Makefile:1143: baseinstall] Error 1 (ignored) cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/img2cif /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/img2cif cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2cbf /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2cbf_old cp: cannot stat '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2cbf': No such file or directory make[2]: [Makefile:1145: baseinstall] Error 1 (ignored) cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/cif2cbf /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2cbf cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/minicbf2nexus /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/minicbf2nexus_old cp: cannot stat '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/minicbf2nexus': No such file or directory make[2]: [Makefile:1147: baseinstall] Error 1 (ignored) cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/minicbf2nexus /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/minicbf2nexus cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2nexus /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2nexus_old cp: cannot stat '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2nexus': No such file or directory make[2]: [Makefile:1149: baseinstall] Error 1 (ignored) cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/cbf2nexus /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2nexus cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/nexus2cbf /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/nexus2cbf_old cp: cannot stat '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/nexus2cbf': No such file or directory make[2]: [Makefile:1151: baseinstall] Error 1 (ignored) cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/nexus2cbf /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/nexus2cbf cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/roi_peaksearch /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/roi_peaksearch_old cp: cannot stat '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/roi_peaksearch': No such file or directory make[2]: [Makefile:1153: baseinstall] Error 1 (ignored) cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/roi_peaksearch /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/roi_peaksearch cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/sequence_match /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/sequence_match_old cp: cannot stat '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/sequence_match': No such file or directory make[2]: [Makefile:1155: baseinstall] Error 1 (ignored) cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/sequence_match /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/sequence_match cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testalloc /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testalloc_old cp: cannot stat '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testalloc': No such file or directory make[2]: [Makefile:1157: baseinstall] Error 1 (ignored) cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/testalloc /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testalloc cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/arvai_test /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/arvai_test_old cp: cannot stat '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/arvai_test': No such file or directory make[2]: [Makefile:1159: baseinstall] Error 1 (ignored) cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/arvai_test /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/arvai_test cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2c_old cp: cannot stat '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2c': No such file or directory make[2]: [Makefile:1161: baseinstall] Error 1 (ignored) cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/cif2c /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2c cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testreals /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testreals_old cp: cannot stat '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testreals': No such file or directory make[2]: [Makefile:1163: baseinstall] Error 1 (ignored) cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/testreals /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testreals cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflat /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflat_old cp: cannot stat '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflat': No such file or directory make[2]: [Makefile:1165: baseinstall] Error 1 (ignored) cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/testflat /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflat cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflatpacked /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflatpacked_old cp: cannot stat '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflatpacked': No such file or directory make[2]: [Makefile:1167: baseinstall] Error 1 (ignored) cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/testflatpacked /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflatpacked #-cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/tiff2cbf /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/tiff2cbf_old #cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/tiff2cbf /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/tiff2cbf cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk_old cp: cannot stat '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk': No such file or directory make[2]: [Makefile:1171: baseinstall] Error 1 (ignored) cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/test_cbf_airy_disk /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk_old cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/test_cbf_airy_disk /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testhdf5 /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testhdf5_old cp: cannot stat '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testhdf5': No such file or directory make[2]: [Makefile:1175: baseinstall] Error 1 (ignored) cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/bin/testhdf5 /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testhdf5 cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf.sh /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf_old.sh cp: cannot stat '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf.sh': No such file or directory make[2]: [Makefile:1177: baseinstall] Error 1 (ignored) cp /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/examples/batch_convert_minicbf.sh /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf.sh chmod 755 /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/arvai_test chmod 755 /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2nexus chmod 755 /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers chmod 755 /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2c chmod 755 /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2cbf chmod 755 /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_image chmod 755 /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_minicbf chmod 755 /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/img2cif chmod 755 /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/makecbf chmod 755 /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/minicbf2nexus chmod 755 /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/nexus2cbf chmod 755 /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/roi_peaksearch chmod 755 /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/sequence_match chmod 755 /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testalloc chmod 755 /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflat chmod 755 /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflatpacked chmod 755 /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testhdf5 chmod 755 /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testreals chmod 755 /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk chmod 755 /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf.sh make[2]: Leaving directory '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1' # install the python extension /usr/bin/make 'C++:=$(CXX)' /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/pycbf/setup.py make[2]: Entering directory '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1' make[2]: '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/pycbf/setup.py' is up to date. make[2]: Leaving directory '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1' dh_auto_install --buildsystem=pybuild --sourcedirectory=pycbf I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/python3-pycbf running install running build running build_py running build_ext running install_lib creating /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/python3-pycbf creating /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr creating /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib creating /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.9 creating /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.9/dist-packages copying /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_pycbf/build/pycbf.py -> /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.9/dist-packages copying /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_pycbf/build/_pycbf.cpython-39-x86_64-linux-gnu.so -> /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.9/dist-packages byte-compiling /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.9/dist-packages/pycbf.py to pycbf.cpython-39.pyc running install_egg_info Writing /build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.9/dist-packages/_pycbf-0.0.0.egg-info make[1]: Leaving directory '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1' debian/rules override_dh_install make[1]: Entering directory '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1' # cbflib-bin dh_install -p cbflib-bin usr/bin/cbf2nexus dh_install: warning: All requested packages have been excluded (e.g. via a Build-Profile or due to architecture restrictions). dh_install -p cbflib-bin usr/bin/cif2cbf dh_install: warning: All requested packages have been excluded (e.g. via a Build-Profile or due to architecture restrictions). dh_install -p cbflib-bin usr/bin/convert_image dh_install: warning: All requested packages have been excluded (e.g. via a Build-Profile or due to architecture restrictions). dh_install -p cbflib-bin usr/bin/img2cif dh_install: warning: All requested packages have been excluded (e.g. via a Build-Profile or due to architecture restrictions). dh_install -p cbflib-bin usr/bin/makecbf dh_install: warning: All requested packages have been excluded (e.g. via a Build-Profile or due to architecture restrictions). # libcbf-dev dh_install -p libcbf-dev usr/include/cbflib/* dh_install: warning: All requested packages have been excluded (e.g. via a Build-Profile or due to architecture restrictions). dh_install -p libcbf-dev usr/lib/*/lib*.a dh_install: warning: All requested packages have been excluded (e.g. via a Build-Profile or due to architecture restrictions). dh_install -p libcbf-dev usr/lib/*/lib*.so dh_install: warning: All requested packages have been excluded (e.g. via a Build-Profile or due to architecture restrictions). # libcbf1 dh_install -p libcbf1 usr/lib/*/libcbf.so.* dh_install: warning: All requested packages have been excluded (e.g. via a Build-Profile or due to architecture restrictions). # Exclude duplicates (lintian check duplicate-files) dh_install -Xcif_img_1.3.2_22Jun05.html -Xcif_img_1.3.1.html make[1]: Leaving directory '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1' debian/rules override_dh_installdocs make[1]: Entering directory '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1' # cbflib-doc dh_install -p cbflib-doc doc/*.html usr/share/doc/cbflib-doc/html dh_installdocs -p cbflib-doc html_graphics dh_installdocs: warning: Cannot auto-detect main package for cbflib-doc. If the default is wrong, please use --doc-main-package # libcbf-dev dh_installdocs -p libcbf-dev README dh_installdocs: warning: All requested packages have been excluded (e.g. via a Build-Profile or due to architecture restrictions). dh_installdocs make[1]: Leaving directory '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1' dh_installchangelogs -i -O--no-parallel debian/rules override_dh_installman make[1]: Entering directory '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1' dh_installman -p cbflib-bin debian/manpages/* dh_installman: warning: All requested packages have been excluded (e.g. via a Build-Profile or due to architecture restrictions). make[1]: Leaving directory '/build/cbflib-2W7ULP/cbflib-0.9.6+dfsg1' dh_python3 -i -O--no-parallel E: dh_python3 dh_python3:176: no package to act on (python3-foo or one with ${python3:Depends} in Depends) dh_installinit -i -O--no-parallel dh_installsystemduser -i -O--no-parallel dh_perl -i -O--no-parallel dh_link -i -O--no-parallel dh_strip_nondeterminism -i -O--no-parallel dh_compress -i -O--no-parallel dh_fixperms -i -O--no-parallel dh_missing -i -O--no-parallel dh_missing: warning: usr/bin/adscimg2cbf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/arvai_test exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/batch_convert_minicbf.sh exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/cbf2adscimg exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/cbf2nexus exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/cbf_standardize_numbers exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/cif2c exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/cif2cbf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/convert_image exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/convert_minicbf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/img2cif exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/makecbf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/minicbf2nexus exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/nexus2cbf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/roi_peaksearch exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/sequence_match exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/test_cbf_airy_disk exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/test_cbf_airy_disk_old exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/testalloc exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/testflat exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/testflatpacked exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/testhdf5 exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/testreals exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/include/cbflib/cbf.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/include/cbflib/cbf_airy_disk.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/include/cbflib/cbf_alloc.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/include/cbflib/cbf_ascii.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/include/cbflib/cbf_binary.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/include/cbflib/cbf_byte_offset.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/include/cbflib/cbf_canonical.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/include/cbflib/cbf_codes.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/include/cbflib/cbf_compress.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/include/cbflib/cbf_context.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/include/cbflib/cbf_copy.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/include/cbflib/cbf_file.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/include/cbflib/cbf_getopt.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/include/cbflib/cbf_hdf5.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/include/cbflib/cbf_hdf5_filter.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/include/cbflib/cbf_lex.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/include/cbflib/cbf_minicbf_header.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/include/cbflib/cbf_nibble_offset.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/include/cbflib/cbf_packed.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/include/cbflib/cbf_predictor.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/include/cbflib/cbf_read_binary.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/include/cbflib/cbf_read_mime.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/include/cbflib/cbf_simple.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/include/cbflib/cbf_string.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/include/cbflib/cbf_stx.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/include/cbflib/cbf_tree.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/include/cbflib/cbf_ulp.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/include/cbflib/cbf_uncompressed.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/include/cbflib/cbf_write.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/include/cbflib/cbf_write_binary.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/include/cbflib/cbf_ws.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/include/cbflib/cbff.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/include/cbflib/global.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/include/cbflib/img.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/include/cbflib/md5.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/x86_64-linux-gnu/libcbf.a exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/x86_64-linux-gnu/libcbf.so exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/x86_64-linux-gnu/libcbf.so.1 exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/x86_64-linux-gnu/libcbf.so.1.0.0 exists in debian/tmp but is not installed to anywhere The following debhelper tools have reported what they installed (with files per package) * dh_install: cbflib-bin (0), cbflib-doc (230), libcbf-dev (0), libcbf1 (0), python3-pycbf (0) * dh_installdocs: cbflib-bin (0), cbflib-doc (1), libcbf-dev (0), libcbf1 (0), python3-pycbf (0) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built If the omission is intentional or no other helper can take care of this consider adding the paths to debian/not-installed. Remember to be careful with paths containing "x86_64-linux-gnu", where you might need to use a wildcard or (assuming compat 13+) e.g. ${DEB_HOST_MULTIARCH} in debian/not-installed to ensure it works on all architectures (see #961104). dh_installdeb -i -O--no-parallel dh_gencontrol -i -O--no-parallel dh_md5sums -i -O--no-parallel dh_builddeb -i -O--no-parallel dpkg-deb: building package 'cbflib-doc' in '../cbflib-doc_0.9.6+dfsg1-3_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../cbflib_0.9.6+dfsg1-3_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/cbflib-2W7ULP /tmp/cbflib-0.9.6+dfsg1-3il0kmbq9 I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.S36CuzEuNC... I: success in 868.5134 seconds md5: cbflib-doc_0.9.6+dfsg1-3_all.deb: OK sha1: cbflib-doc_0.9.6+dfsg1-3_all.deb: OK sha256: cbflib-doc_0.9.6+dfsg1-3_all.deb: OK Checksums: OK