Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/c/capsule-nextflow/capsule-nextflow_1.1.0+dfsg-3_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/capsule-nextflow-1.1.0+dfsg-3sibhf1qy/capsule-nextflow_1.1.0+dfsg-3_all.buildinfo Get source package info: capsule-nextflow=1.1.0+dfsg-3 Source URL: http://snapshot.notset.fr/mr/package/capsule-nextflow/1.1.0+dfsg-3/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=ant=1.10.11-1 ant-optional=1.10.11-1 antlr=2.7.7+dfsg-12 autoconf=2.71-2 automake=1:1.16.5-1.1 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.52 bash=5.1-5+b1 binutils=2.37-10 binutils-common=2.37-10 binutils-x86-64-linux-gnu=2.37-10 bnd=5.0.1-3 bsdextrautils=2.37.2-4 bsdutils=1:2.37.2-4 build-essential=12.9 bzip2=1.0.8-5 ca-certificates=20211016 ca-certificates-java=20190909 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-13 dash=0.5.11+git20210903+057cd650a4ed-3 debconf=1.5.79 debhelper=13.5.2 debianutils=5.5-1 default-jdk-headless=2:1.11-72 default-jre-headless=2:1.11-72 dh-autoreconf=20 dh-strip-nondeterminism=1.12.1-1 diffutils=1:3.7-5 dpkg=1.21.1 dpkg-dev=1.21.1 dwz=0.14-1 file=1:5.41-2 findutils=4.8.0-1 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 g++=4:11.2.0-2 g++-11=11.2.0-13 gcc=4:11.2.0-2 gcc-11=11.2.0-13 gcc-11-base=11.2.0-13 gettext=0.21-4 gettext-base=0.21-4 gradle=4.4.1-13 gradle-debian-helper=2.1 grep=3.7-1 groff-base=1.22.4-7 groovy=2.4.21-1 gzip=1.10-4 hostname=3.23 init-system-helpers=1.61 intltool-debian=0.35.0+20060710.5 ivy=2.5.0-2 java-common=0.72 java-wrappers=0.3 junit4=4.13.2-1 libacl1=2.3.1-1 libantlr-java=2.7.7+dfsg-12 libaopalliance-java=20070526-6 libapache-pom-java=18-1 libarchive-zip-perl=1.68-1 libasan6=11.2.0-13 libasm-java=9.2-1 libasound2=1.2.5.1-1 libasound2-data=1.2.5.1-1 libatinject-jsr330-api-java=1.0+ds1-5 libatomic1=11.2.0-13 libattr1=1:2.5.1-1 libaudit-common=1:3.0.6-1 libaudit1=1:3.0.6-1+b1 libavahi-client3=0.8-5 libavahi-common-data=0.8-5 libavahi-common3=0.8-5 libbcel-java=6.5.0-1 libbcpg-java=1.68-5 libbcprov-java=1.68-5 libbinutils=2.37-10 libblkid1=2.37.2-4 libbrotli1=1.0.9-2+b3 libbsf-java=1:2.4.0-8 libbsh-java=2.0b4-20 libbz2-1.0=1.0.8-5 libc-bin=2.33-1 libc-dev-bin=2.33-1 libc6=2.33-1 libc6-dev=2.33-1 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcc1-0=11.2.0-13 libcdi-api-java=1.2-3 libcom-err2=1.46.4-1 libcommons-cli-java=1.4-2 libcommons-codec-java=1.15-1 libcommons-collections3-java=3.2.2-2 libcommons-compress-java=1.21-1 libcommons-io-java=2.11.0-2 libcommons-lang-java=2.6-9 libcommons-lang3-java=3.11-1 libcommons-logging-java=1.2-2 libcommons-parent-java=43-1 libcrypt-dev=1:4.4.27-1 libcrypt1=1:4.4.27-1 libctf-nobfd0=2.37-10 libctf0=2.37-10 libcups2=2.3.3op2-7 libdb5.3=5.3.28+dfsg1-0.8 libdbus-1-3=1.12.20-3 libdd-plist-java=1.20-1.1 libdebconfclient0=0.261 libdebhelper-perl=13.5.2 libdom4j-java=2.1.3-1 libdpkg-perl=1.21.1 libeclipse-jdt-annotation-java=2.2.600+eclipse4.21-1 libel-api-java=3.0.0-3 libelf1=0.186-1 libexpat1=2.4.1-3 libfelix-framework-java=4.6.1-2.1 libfelix-gogo-runtime-java=0.16.2-1.1 libfelix-resolver-java=1.16.0-1 libffi8=3.4.2-3 libfile-stripnondeterminism-perl=1.12.1-1 libfindbugs-java=3.1.0~preview2-3 libfontconfig1=2.13.1-4.2 libfreetype6=2.11.0+dfsg-1 libgcc-11-dev=11.2.0-13 libgcc-s1=11.2.0-13 libgcrypt20=1.9.4-5 libgdbm-compat4=1.22-1 libgdbm6=1.22-1 libgeronimo-annotation-1.3-spec-java=1.3-1 libgeronimo-interceptor-3.0-spec-java=1.0.1-4 libglib2.0-0=2.70.2-1 libgmp10=2:6.2.1+dfsg-3 libgnutls30=3.7.2-4 libgomp1=11.2.0-13 libgoogle-gson-java=2.8.8-1 libgpg-error0=1.43-1 libgradle-core-java=4.4.1-13 libgradle-plugins-java=4.4.1-13 libgraphite2-3=1.3.14-1 libgssapi-krb5-2=1.18.3-7 libguava-java=29.0-6 libguice-java=4.2.3-2 libhamcrest-java=1.3-9 libharfbuzz0b=2.7.4-1 libhawtjni-runtime-java=1.17-1 libhogweed6=3.7.3-1 libhttpclient-java=4.5.13-3 libhttpcore-java=4.4.14-2 libicu67=67.1-7 libidn2-0=2.3.2-2 libisl23=0.24-2 libitm1=11.2.0-13 libjacoco-java=0.8.6-1 libjansi-java=1.18-1 libjansi-native-java=1.8-1 libjarjar-java=1.4+svn142-10 libjatl-java=0.2.3-1.1 libjavaewah-java=1.1.7-1 libjaxen-java=1.1.6-4 libjcifs-java=1.3.19-2 libjcip-annotations-java=20060626-6 libjcommander-java=1.71-3 libjetty9-java=9.4.44-3 libjformatstring-java=0.10~20131207-2.1 libjgit-java=4.11.9-1 libjimfs-java=1.1-6 libjline2-java=2.14.6-4 libjna-java=5.9.0-1 libjna-jni=5.9.0-1 libjpeg62-turbo=1:2.1.2-1 libjs-jquery=3.5.1+dfsg+~3.5.5-8 libjsch-java=0.1.55-1 libjsoup-java=1.14.3-1 libjsp-api-java=2.3.4-3 libjsr305-java=0.1~+svn49-11 libjzlib-java=1.1.3-2 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 libkryo-java=2.20-7 liblcms2-2=2.12~rc1-2 liblogback-java=1:1.2.8-1 liblsan0=11.2.0-13 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.41-2 libmagic1=1:5.41-2 libmaven-parent-java=31-2 libmaven-resolver-java=1.4.2-3 libmaven-shared-utils-java=3.3.0-1 libmaven3-core-java=3.6.3-5 libminlog-java=1.3.0-1.1 libmount1=2.37.2-4 libmpc3=1.2.1-1 libmpfr6=4.1.0-3 libnative-platform-java=0.14-5 libnative-platform-jni=0.14-5 libncurses6=6.3-1 libnekohtml-java=1.9.22-1.1 libnettle8=3.7.3-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnspr4=2:4.32-3 libnss3=2:3.73.1-1 libobjenesis-java=3.2-1 libosgi-annotation-java=8.0.1-1 libosgi-compendium-java=7.0.0-1 libosgi-core-java=7.0.0-2 libp11-kit0=0.24.0-6 libpam-modules=1.4.0-11 libpam-modules-bin=1.4.0-11 libpam-runtime=1.4.0-11 libpam0g=1.4.0-11 libpcre2-8-0=10.39-3 libpcre3=2:8.39-13 libpcsclite1=1.9.5-1 libperl5.32=5.32.1-6 libpipeline1=1.5.4-1 libplexus-cipher-java=1.8-2 libplexus-classworlds-java=2.6.0-1 libplexus-component-annotations-java=2.1.0-1 libplexus-container-default-java=2.1.0-1 libplexus-interpolation-java=1.26-1 libplexus-sec-dispatcher-java=1.4-4 libplexus-utils2-java=3.3.0-1 libpng16-16=1.6.37-3 libpolyglot-maven-java=0.8~tobrien+git20120905-10 libqdox-java=1.12.1-3 libquadmath0=11.2.0-13 libreflectasm-java=1.11.6+dfsg-1 librhino-java=1.7.7.2-3 libseccomp2=2.5.3-2 libselinux1=3.3-1+b1 libservlet-api-java=4.0.1-2 libservlet3.1-java=1:4.0.1-2 libsigsegv2=2.13-1 libsimple-http-java=4.1.21-1.1 libsisu-inject-java=0.3.4-2 libsisu-plexus-java=0.3.4-3 libslf4j-java=1.7.32-1 libsmartcols1=2.37.2-4 libsqlite3-0=3.36.0-2 libssl1.1=1.1.1l-1 libstdc++-11-dev=11.2.0-13 libstdc++6=11.2.0-13 libsub-override-perl=0.09-2 libsystemd0=249.7-1 libtasn1-6=4.18.0-4 libtinfo6=6.3-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtruth-java=0.39-1 libtsan0=11.2.0-13 libubsan1=11.2.0-13 libuchardet0=0.0.7-1 libudev1=249.7-1 libunistring2=0.9.10-6 libuuid1=2.37.2-4 libwagon-file-java=3.3.4-1 libwagon-http-java=3.3.4-1 libwagon-provider-api-java=3.3.4-1 libwebsocket-api-java=1.1-2 libxbean-reflect-java=4.5-8 libxerces2-java=2.12.1-1 libxml-commons-external-java=1.4.01-5 libxml-commons-resolver1.1-java=1.2-11 libxml2=2.9.12+dfsg-5+b1 libxpp3-java=1.1.4c-3 libxstream-java=1.4.18-2 libxz-java=1.9-1 libyaml-snake-java=1.29-1 libzstd1=1.4.8+dfsg-3 linux-libc-dev=5.15.5-2 login=1:4.8.1-2 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-2 maven-repo-helper=1.10 mawk=1.3.4.20200120-2 ncurses-base=6.3-1 ncurses-bin=6.3-1 openjdk-11-jdk-headless=11.0.13+8-1 openjdk-11-jre-headless=11.0.13+8-1 openssl=1.1.1l-1 patch=2.7.6-7 perl=5.32.1-6 perl-base=5.32.1-6 perl-modules-5.32=5.32.1-6 po-debconf=1.0.21+nmu1 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.01-1 tar=1.34+dfsg-1 testng=6.9.12-4 ucf=3.0043 unzip=6.0-26 util-linux=2.37.2-4 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211222T025120Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211222T025120Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211220T093239Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d capsule-nextflow=1.1.0+dfsg-3 && mkdir -p /build/capsule-nextflow-cMSnaT && dpkg-source --no-check -x /*.dsc /build/capsule-nextflow-cMSnaT/capsule-nextflow-1.1.0+dfsg && chown -R builduser:builduser /build/capsule-nextflow-cMSnaT" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/capsule-nextflow-cMSnaT/capsule-nextflow-1.1.0+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1639995659" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/capsule-nextflow-cMSnaT /tmp/capsule-nextflow-1.1.0+dfsg-3sibhf1qy bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20211220T093239Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.GkhExBVbhV as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.GkhExBVbhV Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-4). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20211220T093239Z unstable/main amd64 libfakeroot amd64 1.26-1 [47.3 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211220T093239Z unstable/main amd64 fakeroot amd64 1.26-1 [87.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (797 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4680 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.26-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.26-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.26-1_amd64.deb ... Unpacking fakeroot (1.26-1) ... Setting up libfakeroot:amd64 (1.26-1) ... Setting up fakeroot (1.26-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-1) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211222T025120Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211222T025120Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211220T093239Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.GkhExBVbhV Get:1 http://snapshot.notset.fr/archive/debian/20211222T025120Z bookworm InRelease [129 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20211220T093239Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20211222T025120Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211222T025120Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211222T025120Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211222T025120Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211222T025120Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211222T025120Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20211222T025120Z bookworm/main Sources [11.8 MB] Get:4 http://snapshot.notset.fr/archive/debian/20211222T025120Z bookworm/main amd64 Packages [11.2 MB] Fetched 23.1 MB in 20s (1174 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.GkhExBVbhV I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d capsule-nextflow=1.1.0+dfsg-3 && mkdir -p /build/capsule-nextflow-cMSnaT && dpkg-source --no-check -x /*.dsc /build/capsule-nextflow-cMSnaT/capsule-nextflow-1.1.0+dfsg && chown -R builduser:builduser /build/capsule-nextflow-cMSnaT"' exec /tmp/mmdebstrap.GkhExBVbhV Reading package lists... NOTICE: 'capsule-nextflow' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/capsule-nextflow.git Please use: git clone https://salsa.debian.org/med-team/capsule-nextflow.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 119 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20211222T025120Z bookworm/main capsule-nextflow 1.1.0+dfsg-3 (dsc) [2262 B] Get:2 http://snapshot.notset.fr/archive/debian/20211222T025120Z bookworm/main capsule-nextflow 1.1.0+dfsg-3 (tar) [75.5 kB] Get:3 http://snapshot.notset.fr/archive/debian/20211222T025120Z bookworm/main capsule-nextflow 1.1.0+dfsg-3 (diff) [41.1 kB] Fetched 119 kB in 0s (687 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'capsule-nextflow_1.1.0+dfsg-3.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting capsule-nextflow in /build/capsule-nextflow-cMSnaT/capsule-nextflow-1.1.0+dfsg dpkg-source: info: unpacking capsule-nextflow_1.1.0+dfsg.orig.tar.xz dpkg-source: info: unpacking capsule-nextflow_1.1.0+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying build.patch dpkg-source: info: applying zipfs.patch dpkg-source: info: applying compound_enumeration.patch dpkg-source: info: applying agent_and_vmsupport.patch dpkg-source: info: applying omit_tests_using_joor.patch dpkg-source: info: applying omit_tests_using_old_truth_statements.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/capsule-nextflow-cMSnaT/capsule-nextflow-1.1.0+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1639995659" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.GkhExBVbhV dpkg-buildpackage: info: source package capsule-nextflow dpkg-buildpackage: info: source version 1.1.0+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Pierre Gruet dpkg-source --before-build . debian/rules clean dh clean --buildsystem=gradle --with maven_repo_helper dh_auto_clean -O--buildsystem=gradle sh -c "find . -wholename .*build/tmp | xargs echo | sed -e 's^build/tmp^build^g' | xargs rm -Rf" sh -c "find . -wholename .*build/debian | xargs echo | sed -e 's^build/tmp^build^g' | xargs rm -Rf" rm -Rf /build/capsule-nextflow-cMSnaT/capsule-nextflow-1.1.0\+dfsg/.gradle /build/capsule-nextflow-cMSnaT/capsule-nextflow-1.1.0\+dfsg/buildSrc/.gradle .m2 dh_autoreconf_clean -O--buildsystem=gradle mh_clean -O--buildsystem=gradle dh_clean -O--buildsystem=gradle debian/rules binary-indep dh binary-indep --buildsystem=gradle --with maven_repo_helper dh_update_autotools_config -i -O--buildsystem=gradle dh_autoreconf -i -O--buildsystem=gradle dh_auto_configure -i -O--buildsystem=gradle dh_auto_build -i -O--buildsystem=gradle mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=capsule-nextflow -Dfile.encoding=UTF-8 --parallel --max-workers=10 jar Initialized native services in: /build/capsule-nextflow-cMSnaT/capsule-nextflow-1.1.0+dfsg/.gradle/native Using 10 worker leases. Creating new cache for fileHashes, path /build/capsule-nextflow-cMSnaT/capsule-nextflow-1.1.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@f27ea3 Creating new cache for resourceHashesCache, path /build/capsule-nextflow-cMSnaT/capsule-nextflow-1.1.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@f27ea3 Creating new cache for fileHashes, path /build/capsule-nextflow-cMSnaT/capsule-nextflow-1.1.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1df98368 WARNING: An illegal reflective access operation has occurred WARNING: Illegal reflective access using Lookup on org.gradle.internal.reflect.JavaMethod (file:/usr/share/gradle/lib/gradle-base-services-4.4.1.jar) to class java.lang.ClassLoader WARNING: Please consider reporting this to the maintainers of org.gradle.internal.reflect.JavaMethod WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations WARNING: All illegal access operations will be denied in a future release Starting Build Compiling initialization script '/build/capsule-nextflow-cMSnaT/capsule-nextflow-1.1.0+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. Creating new cache for metadata-1.1/results, path /build/capsule-nextflow-cMSnaT/capsule-nextflow-1.1.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@793d163b Compiling initialization script '/build/capsule-nextflow-cMSnaT/capsule-nextflow-1.1.0+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Compiling settings file '/build/capsule-nextflow-cMSnaT/capsule-nextflow-1.1.0+dfsg/settings.gradle' using SubsetScriptTransformer. Compiling settings file '/build/capsule-nextflow-cMSnaT/capsule-nextflow-1.1.0+dfsg/settings.gradle' using BuildScriptTransformer. Settings evaluated using settings file '/build/capsule-nextflow-cMSnaT/capsule-nextflow-1.1.0+dfsg/settings.gradle'. Projects loaded. Root project using build file '/build/capsule-nextflow-cMSnaT/capsule-nextflow-1.1.0+dfsg/build.gradle'. Included projects: [root project 'capsule', project ':capsule', project ':capsule-util'] Keep-alive timer started Adding Debian repository to project 'capsule' Adding Debian repository to project 'capsule' Adding Debian repository to project 'capsule-util' Parallel execution is an incubating feature. Evaluating root project 'capsule' using build file '/build/capsule-nextflow-cMSnaT/capsule-nextflow-1.1.0+dfsg/build.gradle'. Compiling build file '/build/capsule-nextflow-cMSnaT/capsule-nextflow-1.1.0+dfsg/build.gradle' using SubsetScriptTransformer. Compiling build file '/build/capsule-nextflow-cMSnaT/capsule-nextflow-1.1.0+dfsg/build.gradle' using BuildScriptTransformer. Evaluating project ':capsule' using build file '/build/capsule-nextflow-cMSnaT/capsule-nextflow-1.1.0+dfsg/capsule/build.gradle'. Adding Maven pom generation to project 'capsule' Linking the generated javadoc to the system JDK API documentation Evaluating project ':capsule-util' using build file '/build/capsule-nextflow-cMSnaT/capsule-nextflow-1.1.0+dfsg/capsule-util/build.gradle'. Adding Maven pom generation to project 'capsule-util' Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : Creating new cache for annotation-processors, path /build/capsule-nextflow-cMSnaT/capsule-nextflow-1.1.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@1dd247b Tasks to be executed: [task ':capsule:compileJava', task ':capsule:processResources', task ':capsule:classes', task ':capsule:debianMavenPom', task ':capsule:jar', task ':capsule-util:compileJava', task ':capsule-util:processResources', task ':capsule-util:classes', task ':capsule-util:debianMavenPom', task ':capsule-util:jar'] Creating new cache for resourceHashesCache, path /build/capsule-nextflow-cMSnaT/capsule-nextflow-1.1.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1df98368 Creating new cache for taskHistory, path /build/capsule-nextflow-cMSnaT/capsule-nextflow-1.1.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@5f911d24 Creating new cache for outputFiles, path /build/capsule-nextflow-cMSnaT/capsule-nextflow-1.1.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@7c5d36c3 :capsule:compileJava (Thread[main,5,main]) started. :capsule:compileJava Putting task artifact state for task ':capsule:compileJava' into context took 0.017 secs. :capsule-util:compileJava (Thread[Task worker for ':' Thread 5,5,main]) started. :capsule-util:compileJava Putting task artifact state for task ':capsule-util:compileJava' into context took 0.015 secs. Up-to-date check for task ':capsule:compileJava' took 0.083 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':capsule:compileJava'. Compiling with JDK Java compiler API. Up-to-date check for task ':capsule-util:compileJava' took 0.139 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':capsule-util:compileJava'. Compiling with JDK Java compiler API. /build/capsule-nextflow-cMSnaT/capsule-nextflow-1.1.0+dfsg/capsule-util/src/main/java/co/paralleluniverse/capsule/Jar.java:40: warning: [removal] Pack200 in java.util.jar has been deprecated and marked for removal import java.util.jar.Pack200; ^ /build/capsule-nextflow-cMSnaT/capsule-nextflow-1.1.0+dfsg/capsule-util/src/main/java/co/paralleluniverse/capsule/Jar.java:59: warning: [removal] Pack200 in java.util.jar has been deprecated and marked for removal private Pack200.Packer packer; ^ /build/capsule-nextflow-cMSnaT/capsule-nextflow-1.1.0+dfsg/capsule-util/src/main/java/co/paralleluniverse/capsule/Jar.java:59: warning: [removal] Packer in Pack200 has been deprecated and marked for removal private Pack200.Packer packer; ^ /build/capsule-nextflow-cMSnaT/capsule-nextflow-1.1.0+dfsg/capsule-util/src/main/java/co/paralleluniverse/capsule/Jar.java:570: warning: [removal] Pack200 in java.util.jar has been deprecated and marked for removal public Jar setPacker(Pack200.Packer packer) { ^ /build/capsule-nextflow-cMSnaT/capsule-nextflow-1.1.0+dfsg/capsule-util/src/main/java/co/paralleluniverse/capsule/Jar.java:570: warning: [removal] Packer in Pack200 has been deprecated and marked for removal public Jar setPacker(Pack200.Packer packer) { ^ Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 5 warnings Note: /build/capsule-nextflow-cMSnaT/capsule-nextflow-1.1.0+dfsg/capsule/src/main/java/Capsule.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. :capsule:compileJava (Thread[main,5,main]) completed. Took 2.769 secs. :capsule:processResources (Thread[main,5,main]) started. :capsule:processResources Putting task artifact state for task ':capsule:processResources' into context took 0.0 secs. file or directory '/build/capsule-nextflow-cMSnaT/capsule-nextflow-1.1.0+dfsg/capsule/src/main/resources', not found Skipping task ':capsule:processResources' as it has no source files and no previous output files. :capsule:processResources NO-SOURCE :capsule:processResources (Thread[main,5,main]) completed. Took 0.007 secs. :capsule:classes (Thread[main,5,main]) started. :capsule:classes Skipping task ':capsule:classes' as it has no actions. :capsule:classes (Thread[main,5,main]) completed. Took 0.0 secs. :capsule:debianMavenPom (Thread[main,5,main]) started. :capsule:debianMavenPom Putting task artifact state for task ':capsule:debianMavenPom' into context took 0.0 secs. Up-to-date check for task ':capsule:debianMavenPom' took 0.001 secs. It is not up-to-date because: No history is available. :capsule-util:compileJava (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 2.752 secs. :capsule-util:processResources (Thread[Task worker for ':' Thread 5,5,main]) started. :capsule-util:processResources Putting task artifact state for task ':capsule-util:processResources' into context took 0.0 secs. Up-to-date check for task ':capsule-util:processResources' took 0.006 secs. It is not up-to-date because: No history is available. :capsule-util:processResources (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 0.09 secs. :capsule-util:classes (Thread[Task worker for ':' Thread 5,5,main]) started. :capsule-util:classes Skipping task ':capsule-util:classes' as it has no actions. :capsule-util:classes (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 0.004 secs. :capsule-util:debianMavenPom (Thread[Task worker for ':' Thread 3,5,main]) started. :capsule-util:debianMavenPom Putting task artifact state for task ':capsule-util:debianMavenPom' into context took 0.0 secs. Up-to-date check for task ':capsule-util:debianMavenPom' took 0.009 secs. It is not up-to-date because: No history is available. Generating pom file /build/capsule-nextflow-cMSnaT/capsule-nextflow-1.1.0+dfsg/capsule-util/build/debian/capsule-util.pom Generating pom file /build/capsule-nextflow-cMSnaT/capsule-nextflow-1.1.0+dfsg/capsule/build/debian/capsule.pom :capsule-util:debianMavenPom (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.163 secs. :capsule-util:jar (Thread[Task worker for ':' Thread 3,5,main]) started. :capsule-util:jar Putting task artifact state for task ':capsule-util:jar' into context took 0.0 secs. :capsule:debianMavenPom (Thread[main,5,main]) completed. Took 0.302 secs. :capsule:jar (Thread[main,5,main]) started. :capsule:jar Putting task artifact state for task ':capsule:jar' into context took 0.0 secs. Up-to-date check for task ':capsule-util:jar' took 0.007 secs. It is not up-to-date because: No history is available. Up-to-date check for task ':capsule:jar' took 0.011 secs. It is not up-to-date because: No history is available. :capsule:jar (Thread[main,5,main]) completed. Took 0.056 secs. :capsule-util:jar (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.165 secs. BUILD SUCCESSFUL in 11s 7 actionable tasks: 7 executed dh: command-omitted: The call to "dh_auto_test -i -O--buildsystem=gradle" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -i -O--buildsystem=gradle dh_prep -i -O--buildsystem=gradle dh_auto_install --destdir=debian/capsule-nextflow/ -i -O--buildsystem=gradle dh_install -i -O--buildsystem=gradle mh_install -i -O--buildsystem=gradle dh_installdocs -i -O--buildsystem=gradle dh_installchangelogs -i -O--buildsystem=gradle dh_installexamples -i -O--buildsystem=gradle dh_installman -i -O--buildsystem=gradle dh_installsystemduser -i -O--buildsystem=gradle dh_perl -i -O--buildsystem=gradle dh_link -i -O--buildsystem=gradle dh_strip_nondeterminism -i -O--buildsystem=gradle dh_compress -i -O--buildsystem=gradle dh_fixperms -i -O--buildsystem=gradle dh_missing -i -O--buildsystem=gradle dh_installdeb -i -O--buildsystem=gradle dh_gencontrol -i -O--buildsystem=gradle dpkg-gencontrol: warning: Depends field of package capsule-nextflow: substitution variable ${java:Depends} used, but is not defined dh_md5sums -i -O--buildsystem=gradle dh_builddeb -i -O--buildsystem=gradle dpkg-deb: building package 'capsule-nextflow' in '../capsule-nextflow_1.1.0+dfsg-3_all.deb'. dpkg-genbuildinfo --build=all -O../capsule-nextflow_1.1.0+dfsg-3_all.buildinfo dpkg-genchanges --build=all -O../capsule-nextflow_1.1.0+dfsg-3_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/capsule-nextflow-cMSnaT /tmp/capsule-nextflow-1.1.0+dfsg-3sibhf1qy I: cleaning package lists and apt cache... W: deleting files in /tmp: hsperfdata_root W: deleting files in /tmp: hsperfdata_builduser I: removing tempdir /tmp/mmdebstrap.GkhExBVbhV... I: success in 634.6850 seconds md5: capsule-nextflow_1.1.0+dfsg-3_all.deb: OK sha1: capsule-nextflow_1.1.0+dfsg-3_all.deb: OK sha256: capsule-nextflow_1.1.0+dfsg-3_all.deb: OK Checksums: OK