Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/b/bolt-lmm/bolt-lmm_2.3.6+dfsg-1_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/bolt-lmm-2.3.6+dfsg-1cejp_s93/bolt-lmm_2.3.6+dfsg-1_all.buildinfo Get source package info: bolt-lmm=2.3.6+dfsg-1 Source URL: http://snapshot.notset.fr/mr/package/bolt-lmm/2.3.6+dfsg-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.5-1.1 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.52 bash=5.1-3.1 binutils=2.37-9 binutils-common=2.37-9 binutils-x86-64-linux-gnu=2.37-9 bsdextrautils=2.37.2-4 bsdutils=1:2.37.2-4 build-essential=12.9 bzip2=1.0.8-4 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-12 dash=0.5.11+git20210903+057cd650a4ed-3 debconf=1.5.79 debhelper=13.5.2 debianutils=5.5-1 dh-autoreconf=20 dh-strip-nondeterminism=1.12.0-2 diffutils=1:3.7-5 dpkg=1.20.9 dpkg-dev=1.20.9 dwz=0.14-1 file=1:5.39-3 findutils=4.8.0-1 g++=4:11.2.0-2 g++-11=11.2.0-12 gcc=4:11.2.0-2 gcc-11=11.2.0-12 gcc-11-base=11.2.0-12 gettext=0.21-4 gettext-base=0.21-4 gfortran=4:11.2.0-2 gfortran-11=11.2.0-12 grep=3.7-1 groff-base=1.22.4-7 gzip=1.10-4 hostname=3.23 icu-devtools=67.1-7 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libarchive-zip-perl=1.68-1 libasan6=11.2.0-12 libatomic1=11.2.0-12 libattr1=1:2.5.1-1 libaudit-common=1:3.0.6-1 libaudit1=1:3.0.6-1 libbinutils=2.37-9 libblkid1=2.37.2-4 libboost-dev=1.74.0.3 libboost-iostreams-dev=1.74.0.3 libboost-iostreams1.74-dev=1.74.0-12 libboost-iostreams1.74.0=1.74.0-12 libboost-program-options-dev=1.74.0.3 libboost-program-options1.74-dev=1.74.0-12 libboost-program-options1.74.0=1.74.0-12 libboost-regex1.74-dev=1.74.0-12 libboost-regex1.74.0=1.74.0-12 libboost1.74-dev=1.74.0-12 libbz2-1.0=1.0.8-4 libc-bin=2.32-4 libc-dev-bin=2.32-4 libc6=2.32-4 libc6-dev=2.32-4 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcc1-0=11.2.0-12 libcom-err2=1.46.4-1 libcrypt-dev=1:4.4.26-1 libcrypt1=1:4.4.26-1 libctf-nobfd0=2.37-9 libctf0=2.37-9 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.261 libdebhelper-perl=13.5.2 libdpkg-perl=1.20.9 libelf1=0.186-1 libfile-stripnondeterminism-perl=1.12.0-2 libgcc-11-dev=11.2.0-12 libgcc-s1=11.2.0-12 libgcrypt20=1.9.4-3+b1 libgdbm-compat4=1.22-1 libgdbm6=1.22-1 libgfortran-11-dev=11.2.0-12 libgfortran5=11.2.0-12 libgmp10=2:6.2.1+dfsg-3 libgomp1=11.2.0-12 libgpg-error0=1.42-3 libgssapi-krb5-2=1.18.3-7 libicu-dev=67.1-7 libicu67=67.1-7 libisl23=0.24-2 libitm1=11.2.0-12 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 liblsan0=11.2.0-12 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmount1=2.37.2-4 libmpc3=1.2.1-1 libmpfr6=4.1.0-3 libnlopt-cxx-dev=2.7.0-5 libnlopt-cxx0=2.7.0-5 libnlopt-dev=2.7.0-5 libnlopt0=2.7.0-5 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libopenblas-dev=0.3.18+ds-2 libopenblas-pthread-dev=0.3.18+ds-2 libopenblas0=0.3.18+ds-2 libopenblas0-pthread=0.3.18+ds-2 libpam-modules=1.4.0-10 libpam-modules-bin=1.4.0-10 libpam-runtime=1.4.0-10 libpam0g=1.4.0-10 libpcre2-8-0=10.39-3 libpcre3=2:8.39-13 libperl5.32=5.32.1-6 libpipeline1=1.5.4-1 libquadmath0=11.2.0-12 libseccomp2=2.5.2-2 libselinux1=3.3-1 libsigsegv2=2.13-1 libsmartcols1=2.37.2-4 libssl1.1=1.1.1l-1 libstdc++-11-dev=11.2.0-12 libstdc++6=11.2.0-12 libsub-override-perl=0.09-2 libsystemd0=249.6-2 libtinfo6=6.3-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtsan0=11.2.0-12 libubsan1=11.2.0-12 libuchardet0=0.0.7-1 libudev1=249.6-2 libunistring2=0.9.10-6 libuuid1=2.37.2-4 libxml2=2.9.12+dfsg-5+b1 libzstd1=1.4.8+dfsg-3 linux-libc-dev=5.14.16-1 login=1:4.8.1-2 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-2 mawk=1.3.4.20200120-2 ncurses-base=6.3-1 ncurses-bin=6.3-1 patch=2.7.6-7 perl=5.32.1-6 perl-base=5.32.1-6 perl-modules-5.32=5.32.1-6 po-debconf=1.0.21+nmu1 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.00-1 tar=1.34+dfsg-1 util-linux=2.37.2-4 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211122T030439Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211122T030439Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211216T085418Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20211118T084946Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d bolt-lmm=2.3.6+dfsg-1 && mkdir -p /build/bolt-lmm-bRQsCV && dpkg-source --no-check -x /*.dsc /build/bolt-lmm-bRQsCV/bolt-lmm-2.3.6+dfsg && chown -R builduser:builduser /build/bolt-lmm-bRQsCV" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/bolt-lmm-bRQsCV/bolt-lmm-2.3.6+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1637336679" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/bolt-lmm-bRQsCV /tmp/bolt-lmm-2.3.6+dfsg-1cejp_s93 bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20211118T084946Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.hj5N_8cxhv as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.hj5N_8cxhv Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-4). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20211118T084946Z unstable/main amd64 libfakeroot amd64 1.26-1 [47.3 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211118T084946Z unstable/main amd64 fakeroot amd64 1.26-1 [87.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (921 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4669 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.26-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.26-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.26-1_amd64.deb ... Unpacking fakeroot (1.26-1) ... Setting up libfakeroot:amd64 (1.26-1) ... Setting up fakeroot (1.26-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.32-4) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211122T030439Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211122T030439Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211216T085418Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20211118T084946Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.hj5N_8cxhv Get:1 http://snapshot.notset.fr/archive/debian/20211122T030439Z bookworm InRelease [129 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211216T085418Z unstable InRelease [165 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20211118T084946Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20211122T030439Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20211122T030439Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20211122T030439Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20211122T030439Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20211122T030439Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20211122T030439Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20211122T030439Z bookworm/main Sources [11.7 MB] Get:5 http://snapshot.notset.fr/archive/debian/20211122T030439Z bookworm/main amd64 Packages [11.2 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20211216T085418Z unstable/main amd64 Packages Err:6 http://snapshot.notset.fr/archive/debian/20211216T085418Z unstable/main amd64 Packages 404 Not Found [IP: 10.13.0.253 80] Ign:6 http://snapshot.notset.fr/archive/debian/20211216T085418Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20211216T085418Z unstable/main amd64 Packages [12.0 MB] Fetched 35.3 MB in 28s (1247 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.hj5N_8cxhv I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d bolt-lmm=2.3.6+dfsg-1 && mkdir -p /build/bolt-lmm-bRQsCV && dpkg-source --no-check -x /*.dsc /build/bolt-lmm-bRQsCV/bolt-lmm-2.3.6+dfsg && chown -R builduser:builduser /build/bolt-lmm-bRQsCV"' exec /tmp/mmdebstrap.hj5N_8cxhv Reading package lists... NOTICE: 'bolt-lmm' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/bolt-lmm.git Please use: git clone https://salsa.debian.org/med-team/bolt-lmm.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2815 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20211122T030439Z bookworm/main bolt-lmm 2.3.6+dfsg-1 (dsc) [2229 B] Get:2 http://snapshot.notset.fr/archive/debian/20211122T030439Z bookworm/main bolt-lmm 2.3.6+dfsg-1 (tar) [2804 kB] Get:3 http://snapshot.notset.fr/archive/debian/20211122T030439Z bookworm/main bolt-lmm 2.3.6+dfsg-1 (diff) [8492 B] Fetched 2815 kB in 2s (1278 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'bolt-lmm_2.3.6+dfsg-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting bolt-lmm in /build/bolt-lmm-bRQsCV/bolt-lmm-2.3.6+dfsg dpkg-source: info: unpacking bolt-lmm_2.3.6+dfsg.orig.tar.xz dpkg-source: info: unpacking bolt-lmm_2.3.6+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Fix_makefile.patch dpkg-source: info: applying timer-for-other-arches.patch dpkg-source: info: applying dont-hardcode-glibc-version.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/bolt-lmm-bRQsCV/bolt-lmm-2.3.6+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1637336679" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.hj5N_8cxhv dpkg-buildpackage: info: source package bolt-lmm dpkg-buildpackage: info: source version 2.3.6+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Dylan Aïssi dpkg-source --before-build . debian/rules clean dh clean --sourcedirectory=src dh_auto_clean -O--sourcedirectory=src cd src && make -j10 clean make[1]: Entering directory '/build/bolt-lmm-bRQsCV/bolt-lmm-2.3.6+dfsg/src' rm -f *.o rm -f bolt make[1]: Leaving directory '/build/bolt-lmm-bRQsCV/bolt-lmm-2.3.6+dfsg/src' dh_autoreconf_clean -O--sourcedirectory=src dh_clean -O--sourcedirectory=src debian/rules binary-indep dh binary-indep --sourcedirectory=src dh_update_autotools_config -i -O--sourcedirectory=src dh_autoreconf -i -O--sourcedirectory=src dh_auto_configure -i -O--sourcedirectory=src debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/bolt-lmm-bRQsCV/bolt-lmm-2.3.6+dfsg' cd /build/bolt-lmm-bRQsCV/bolt-lmm-2.3.6+dfsg/example/ && \ tar Jcvf examples.tar.xz * --sort=name --mode=go=rX,u+rw,a-s --owner=root --group=root --numeric-owner EUR_subset.bed EUR_subset.bim EUR_subset.dosage.chr17first100 EUR_subset.dosage.chr22last100.gz EUR_subset.dosage.indivs EUR_subset.dosage2.chr17first100.gz EUR_subset.dosage2.chr17first100.map EUR_subset.dosage2.chr17second100 EUR_subset.dosage2.chr17second100.map EUR_subset.dosage2.chr22last100.gz EUR_subset.dosage2.chr22last100.map EUR_subset.dosage2FileList.txt EUR_subset.exclude EUR_subset.exclude2 EUR_subset.fam EUR_subset.impute2.chr17first100.gz EUR_subset.impute2.chr17second100 EUR_subset.impute2.chr22last100.gz EUR_subset.impute2.indivs EUR_subset.impute2FileList.txt EUR_subset.modelSnps EUR_subset.modelSnps2 EUR_subset.pheno.covars EUR_subset.pheno2.covars EUR_subset.remove example.dosage2Snps.stats example.dosageSnps.stats example.impute2Snps.stats example.log example.stats example_reml2.log run_example.sh run_example_reml2.sh make[1]: Leaving directory '/build/bolt-lmm-bRQsCV/bolt-lmm-2.3.6+dfsg' dh: command-omitted: The call to "dh_auto_test -i -O--sourcedirectory=src" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -i -O--sourcedirectory=src dh_prep -i -O--sourcedirectory=src dh_auto_install -i -O--sourcedirectory=src dh_install -i -O--sourcedirectory=src dh_installdocs -i -O--sourcedirectory=src debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/bolt-lmm-bRQsCV/bolt-lmm-2.3.6+dfsg' dh_installchangelogs debian/upstream.changelog make[1]: Leaving directory '/build/bolt-lmm-bRQsCV/bolt-lmm-2.3.6+dfsg' dh_installman -i -O--sourcedirectory=src dh_installsystemduser -i -O--sourcedirectory=src dh_perl -i -O--sourcedirectory=src dh_link -i -O--sourcedirectory=src dh_strip_nondeterminism -i -O--sourcedirectory=src dh_compress -i -O--sourcedirectory=src dh_fixperms -i -O--sourcedirectory=src dh_missing -i -O--sourcedirectory=src dh_installdeb -i -O--sourcedirectory=src dh_gencontrol -i -O--sourcedirectory=src dh_md5sums -i -O--sourcedirectory=src dh_builddeb -i -O--sourcedirectory=src dpkg-deb: building package 'bolt-lmm-example' in '../bolt-lmm-example_2.3.6+dfsg-1_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../bolt-lmm_2.3.6+dfsg-1_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/bolt-lmm-bRQsCV /tmp/bolt-lmm-2.3.6+dfsg-1cejp_s93 I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.hj5N_8cxhv... I: success in 356.4477 seconds md5: bolt-lmm-example_2.3.6+dfsg-1_all.deb: OK sha1: bolt-lmm-example_2.3.6+dfsg-1_all.deb: OK sha256: bolt-lmm-example_2.3.6+dfsg-1_all.deb: OK Checksums: OK