Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/b/blasr/blasr_5.3.5+dfsg-3_amd64.buildinfo Use metasnap for getting required timestamps Cannot get timestamps from metasnap: 404 (Not Found) Use snapshot for getting required timestamps Get source package info: blasr=5.3.5+dfsg-3 Source URL: http://snapshot.notset.fr/mr/package/blasr/5.3.5+dfsg-3/srcfiles?fileinfo=1 Initialize APT cache Get binary package info: autoconf=2.71-2 Binary URL: http://snapshot.notset.fr/mr/binary/autoconf/2.71-2/binfiles?fileinfo=1 Get binary package info: automake=1:1.16.5-1.1 Binary URL: http://snapshot.notset.fr/mr/binary/automake/1:1.16.5-1.1/binfiles?fileinfo=1 Get binary package info: autopoint=0.21-4 Binary URL: http://snapshot.notset.fr/mr/binary/autopoint/0.21-4/binfiles?fileinfo=1 Get binary package info: autotools-dev=20220109.1 Binary URL: http://snapshot.notset.fr/mr/binary/autotools-dev/20220109.1/binfiles?fileinfo=1 Get binary package info: base-files=12.2 Binary URL: http://snapshot.notset.fr/mr/binary/base-files/12.2/binfiles?fileinfo=1 Get binary package info: base-passwd=3.5.52 Binary URL: http://snapshot.notset.fr/mr/binary/base-passwd/3.5.52/binfiles?fileinfo=1 Get binary package info: bash=5.1-6 Binary URL: http://snapshot.notset.fr/mr/binary/bash/5.1-6/binfiles?fileinfo=1 Get binary package info: binutils=2.38-2 Binary URL: http://snapshot.notset.fr/mr/binary/binutils/2.38-2/binfiles?fileinfo=1 Get binary package info: binutils-common=2.38-2 Binary URL: http://snapshot.notset.fr/mr/binary/binutils-common/2.38-2/binfiles?fileinfo=1 Get binary package info: binutils-x86-64-linux-gnu=2.38-2 Binary URL: http://snapshot.notset.fr/mr/binary/binutils-x86-64-linux-gnu/2.38-2/binfiles?fileinfo=1 Get binary package info: bsdextrautils=2.37.3-1+b1 Binary URL: http://snapshot.notset.fr/mr/binary/bsdextrautils/2.37.3-1+b1/binfiles?fileinfo=1 Get binary package info: bsdutils=1:2.37.3-1+b1 Binary URL: http://snapshot.notset.fr/mr/binary/bsdutils/1:2.37.3-1+b1/binfiles?fileinfo=1 Get binary package info: build-essential=12.9 Binary URL: http://snapshot.notset.fr/mr/binary/build-essential/12.9/binfiles?fileinfo=1 Get binary package info: bzip2=1.0.8-5 Binary URL: http://snapshot.notset.fr/mr/binary/bzip2/1.0.8-5/binfiles?fileinfo=1 Get binary package info: cmake=3.22.1-1+b1 Binary URL: http://snapshot.notset.fr/mr/binary/cmake/3.22.1-1+b1/binfiles?fileinfo=1 Get binary package info: cmake-data=3.22.1-1 Binary URL: http://snapshot.notset.fr/mr/binary/cmake-data/3.22.1-1/binfiles?fileinfo=1 Get binary package info: coreutils=8.32-4.1 Binary URL: http://snapshot.notset.fr/mr/binary/coreutils/8.32-4.1/binfiles?fileinfo=1 Get binary package info: cpp=4:11.2.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/cpp/4:11.2.0-2/binfiles?fileinfo=1 Get binary package info: cpp-11=11.2.0-18 Binary URL: http://snapshot.notset.fr/mr/binary/cpp-11/11.2.0-18/binfiles?fileinfo=1 Get binary package info: dash=0.5.11+git20210903+057cd650a4ed-7 Binary URL: http://snapshot.notset.fr/mr/binary/dash/0.5.11+git20210903+057cd650a4ed-7/binfiles?fileinfo=1 Get binary package info: debconf=1.5.79 Binary URL: http://snapshot.notset.fr/mr/binary/debconf/1.5.79/binfiles?fileinfo=1 Get binary package info: debhelper=13.6 Binary URL: http://snapshot.notset.fr/mr/binary/debhelper/13.6/binfiles?fileinfo=1 Get binary package info: debianutils=5.7-0.1 Binary URL: http://snapshot.notset.fr/mr/binary/debianutils/5.7-0.1/binfiles?fileinfo=1 Get binary package info: dh-autoreconf=20 Binary URL: http://snapshot.notset.fr/mr/binary/dh-autoreconf/20/binfiles?fileinfo=1 Get binary package info: dh-elpa-helper=2.0.10 Binary URL: http://snapshot.notset.fr/mr/binary/dh-elpa-helper/2.0.10/binfiles?fileinfo=1 Get binary package info: dh-strip-nondeterminism=1.13.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/dh-strip-nondeterminism/1.13.0-1/binfiles?fileinfo=1 Get binary package info: diffutils=1:3.7-5 Binary URL: http://snapshot.notset.fr/mr/binary/diffutils/1:3.7-5/binfiles?fileinfo=1 Get binary package info: dpkg=1.21.1 Binary URL: http://snapshot.notset.fr/mr/binary/dpkg/1.21.1/binfiles?fileinfo=1 Get binary package info: dpkg-dev=1.21.1 Binary URL: http://snapshot.notset.fr/mr/binary/dpkg-dev/1.21.1/binfiles?fileinfo=1 Get binary package info: dwz=0.14-1 Binary URL: http://snapshot.notset.fr/mr/binary/dwz/0.14-1/binfiles?fileinfo=1 Get binary package info: emacsen-common=3.0.4 Binary URL: http://snapshot.notset.fr/mr/binary/emacsen-common/3.0.4/binfiles?fileinfo=1 Get binary package info: file=1:5.41-2 Binary URL: http://snapshot.notset.fr/mr/binary/file/1:5.41-2/binfiles?fileinfo=1 Get binary package info: findutils=4.9.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/findutils/4.9.0-2/binfiles?fileinfo=1 Get binary package info: g++=4:11.2.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/g++/4:11.2.0-2/binfiles?fileinfo=1 Get binary package info: g++-11=11.2.0-18 Binary URL: http://snapshot.notset.fr/mr/binary/g++-11/11.2.0-18/binfiles?fileinfo=1 Get binary package info: gcc=4:11.2.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/gcc/4:11.2.0-2/binfiles?fileinfo=1 Get binary package info: gcc-11=11.2.0-18 Binary URL: http://snapshot.notset.fr/mr/binary/gcc-11/11.2.0-18/binfiles?fileinfo=1 Get binary package info: gcc-11-base=11.2.0-18 Binary URL: http://snapshot.notset.fr/mr/binary/gcc-11-base/11.2.0-18/binfiles?fileinfo=1 Get binary package info: gcc-12-base=12-20220302-1 Binary URL: http://snapshot.notset.fr/mr/binary/gcc-12-base/12-20220302-1/binfiles?fileinfo=1 Get binary package info: gettext=0.21-4 Binary URL: http://snapshot.notset.fr/mr/binary/gettext/0.21-4/binfiles?fileinfo=1 Get binary package info: gettext-base=0.21-4 Binary URL: http://snapshot.notset.fr/mr/binary/gettext-base/0.21-4/binfiles?fileinfo=1 Get binary package info: googletest=1.11.0-3 Binary URL: http://snapshot.notset.fr/mr/binary/googletest/1.11.0-3/binfiles?fileinfo=1 Get binary package info: grep=3.7-1 Binary URL: http://snapshot.notset.fr/mr/binary/grep/3.7-1/binfiles?fileinfo=1 Get binary package info: groff-base=1.22.4-8 Binary URL: http://snapshot.notset.fr/mr/binary/groff-base/1.22.4-8/binfiles?fileinfo=1 Get binary package info: gzip=1.10-4 Binary URL: http://snapshot.notset.fr/mr/binary/gzip/1.10-4/binfiles?fileinfo=1 Get binary package info: hdf5-helpers=1.10.7+repack-4 Binary URL: http://snapshot.notset.fr/mr/binary/hdf5-helpers/1.10.7+repack-4/binfiles?fileinfo=1 Get binary package info: hostname=3.23 Binary URL: http://snapshot.notset.fr/mr/binary/hostname/3.23/binfiles?fileinfo=1 Get binary package info: init-system-helpers=1.62 Binary URL: http://snapshot.notset.fr/mr/binary/init-system-helpers/1.62/binfiles?fileinfo=1 Get binary package info: intltool-debian=0.35.0+20060710.5 Binary URL: http://snapshot.notset.fr/mr/binary/intltool-debian/0.35.0+20060710.5/binfiles?fileinfo=1 Get binary package info: libacl1=2.3.1-1 Binary URL: http://snapshot.notset.fr/mr/binary/libacl1/2.3.1-1/binfiles?fileinfo=1 Get binary package info: libaec-dev=1.0.6-1 Binary URL: http://snapshot.notset.fr/mr/binary/libaec-dev/1.0.6-1/binfiles?fileinfo=1 Get binary package info: libaec0=1.0.6-1 Binary URL: http://snapshot.notset.fr/mr/binary/libaec0/1.0.6-1/binfiles?fileinfo=1 Get binary package info: libarchive-zip-perl=1.68-1 Binary URL: http://snapshot.notset.fr/mr/binary/libarchive-zip-perl/1.68-1/binfiles?fileinfo=1 Get binary package info: libarchive13=3.5.2-1 Binary URL: http://snapshot.notset.fr/mr/binary/libarchive13/3.5.2-1/binfiles?fileinfo=1 Get binary package info: libasan6=11.2.0-18 Binary URL: http://snapshot.notset.fr/mr/binary/libasan6/11.2.0-18/binfiles?fileinfo=1 Get binary package info: libatomic1=12-20220302-1 Binary URL: http://snapshot.notset.fr/mr/binary/libatomic1/12-20220302-1/binfiles?fileinfo=1 Get binary package info: libattr1=1:2.5.1-1 Binary URL: http://snapshot.notset.fr/mr/binary/libattr1/1:2.5.1-1/binfiles?fileinfo=1 Get binary package info: libaudit-common=1:3.0.7-1 Binary URL: http://snapshot.notset.fr/mr/binary/libaudit-common/1:3.0.7-1/binfiles?fileinfo=1 Get binary package info: libaudit1=1:3.0.7-1 Binary URL: http://snapshot.notset.fr/mr/binary/libaudit1/1:3.0.7-1/binfiles?fileinfo=1 Get binary package info: libbinutils=2.38-2 Binary URL: http://snapshot.notset.fr/mr/binary/libbinutils/2.38-2/binfiles?fileinfo=1 Get binary package info: libblasr-dev=5.3.5+dfsg-4 Binary URL: http://snapshot.notset.fr/mr/binary/libblasr-dev/5.3.5+dfsg-4/binfiles?fileinfo=1 Get binary package info: libblasr5.3.5=5.3.5+dfsg-4 Binary URL: http://snapshot.notset.fr/mr/binary/libblasr5.3.5/5.3.5+dfsg-4/binfiles?fileinfo=1 Get binary package info: libblkid1=2.37.3-1+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libblkid1/2.37.3-1+b1/binfiles?fileinfo=1 Get binary package info: libboost-dev=1.74.0.3 Binary URL: http://snapshot.notset.fr/mr/binary/libboost-dev/1.74.0.3/binfiles?fileinfo=1 Get binary package info: libboost1.74-dev=1.74.0-14 Binary URL: http://snapshot.notset.fr/mr/binary/libboost1.74-dev/1.74.0-14/binfiles?fileinfo=1 Get binary package info: libbrotli1=1.0.9-2+b3 Binary URL: http://snapshot.notset.fr/mr/binary/libbrotli1/1.0.9-2+b3/binfiles?fileinfo=1 Get binary package info: libbz2-1.0=1.0.8-5 Binary URL: http://snapshot.notset.fr/mr/binary/libbz2-1.0/1.0.8-5/binfiles?fileinfo=1 Get binary package info: libc-bin=2.33-7 Binary URL: http://snapshot.notset.fr/mr/binary/libc-bin/2.33-7/binfiles?fileinfo=1 Get binary package info: libc-dev-bin=2.33-7 Binary URL: http://snapshot.notset.fr/mr/binary/libc-dev-bin/2.33-7/binfiles?fileinfo=1 Get binary package info: libc6=2.33-7 Binary URL: http://snapshot.notset.fr/mr/binary/libc6/2.33-7/binfiles?fileinfo=1 Get binary package info: libc6-dev=2.33-7 Binary URL: http://snapshot.notset.fr/mr/binary/libc6-dev/2.33-7/binfiles?fileinfo=1 Get binary package info: libcap-ng0=0.7.9-2.2+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libcap-ng0/0.7.9-2.2+b1/binfiles?fileinfo=1 Get binary package info: libcap2=1:2.44-1 Binary URL: http://snapshot.notset.fr/mr/binary/libcap2/1:2.44-1/binfiles?fileinfo=1 Get binary package info: libcc1-0=12-20220302-1 Binary URL: http://snapshot.notset.fr/mr/binary/libcc1-0/12-20220302-1/binfiles?fileinfo=1 Get binary package info: libcom-err2=1.46.5-2 Binary URL: http://snapshot.notset.fr/mr/binary/libcom-err2/1.46.5-2/binfiles?fileinfo=1 Get binary package info: libcrypt-dev=1:4.4.27-1.1 Binary URL: http://snapshot.notset.fr/mr/binary/libcrypt-dev/1:4.4.27-1.1/binfiles?fileinfo=1 Get binary package info: libcrypt1=1:4.4.27-1.1 Binary URL: http://snapshot.notset.fr/mr/binary/libcrypt1/1:4.4.27-1.1/binfiles?fileinfo=1 Get binary package info: libctf-nobfd0=2.38-2 Binary URL: http://snapshot.notset.fr/mr/binary/libctf-nobfd0/2.38-2/binfiles?fileinfo=1 Get binary package info: libctf0=2.38-2 Binary URL: http://snapshot.notset.fr/mr/binary/libctf0/2.38-2/binfiles?fileinfo=1 Get binary package info: libcurl3-gnutls=7.82.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/libcurl3-gnutls/7.82.0-1/binfiles?fileinfo=1 Get binary package info: libcurl4=7.82.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/libcurl4/7.82.0-1/binfiles?fileinfo=1 Get binary package info: libcurl4-gnutls-dev=7.82.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/libcurl4-gnutls-dev/7.82.0-1/binfiles?fileinfo=1 Get binary package info: libdb5.3=5.3.28+dfsg1-0.8 Binary URL: http://snapshot.notset.fr/mr/binary/libdb5.3/5.3.28+dfsg1-0.8/binfiles?fileinfo=1 Get binary package info: libdebconfclient0=0.261 Binary URL: http://snapshot.notset.fr/mr/binary/libdebconfclient0/0.261/binfiles?fileinfo=1 Get binary package info: libdebhelper-perl=13.6 Binary URL: http://snapshot.notset.fr/mr/binary/libdebhelper-perl/13.6/binfiles?fileinfo=1 Get binary package info: libdeflate-dev=1.10-1 Binary URL: http://snapshot.notset.fr/mr/binary/libdeflate-dev/1.10-1/binfiles?fileinfo=1 Get binary package info: libdeflate0=1.10-1 Binary URL: http://snapshot.notset.fr/mr/binary/libdeflate0/1.10-1/binfiles?fileinfo=1 Get binary package info: libdpkg-perl=1.21.1 Binary URL: http://snapshot.notset.fr/mr/binary/libdpkg-perl/1.21.1/binfiles?fileinfo=1 Get binary package info: libelf1=0.186-1 Binary URL: http://snapshot.notset.fr/mr/binary/libelf1/0.186-1/binfiles?fileinfo=1 Get binary package info: libexpat1=2.4.7-1 Binary URL: http://snapshot.notset.fr/mr/binary/libexpat1/2.4.7-1/binfiles?fileinfo=1 Get binary package info: libffi8=3.4.2-4 Binary URL: http://snapshot.notset.fr/mr/binary/libffi8/3.4.2-4/binfiles?fileinfo=1 Get binary package info: libfile-stripnondeterminism-perl=1.13.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/libfile-stripnondeterminism-perl/1.13.0-1/binfiles?fileinfo=1 Get binary package info: libgcc-11-dev=11.2.0-18 Binary URL: http://snapshot.notset.fr/mr/binary/libgcc-11-dev/11.2.0-18/binfiles?fileinfo=1 Get binary package info: libgcc-s1=12-20220302-1 Binary URL: http://snapshot.notset.fr/mr/binary/libgcc-s1/12-20220302-1/binfiles?fileinfo=1 Get binary package info: libgcrypt20=1.9.4-5 Binary URL: http://snapshot.notset.fr/mr/binary/libgcrypt20/1.9.4-5/binfiles?fileinfo=1 Get binary package info: libgdbm-compat4=1.23-1 Binary URL: http://snapshot.notset.fr/mr/binary/libgdbm-compat4/1.23-1/binfiles?fileinfo=1 Get binary package info: libgdbm6=1.23-1 Binary URL: http://snapshot.notset.fr/mr/binary/libgdbm6/1.23-1/binfiles?fileinfo=1 Get binary package info: libgfortran5=12-20220302-1 Binary URL: http://snapshot.notset.fr/mr/binary/libgfortran5/12-20220302-1/binfiles?fileinfo=1 Get binary package info: libglib2.0-0=2.70.4-1 Binary URL: http://snapshot.notset.fr/mr/binary/libglib2.0-0/2.70.4-1/binfiles?fileinfo=1 Get binary package info: libgmp10=2:6.2.1+dfsg-3 Binary URL: http://snapshot.notset.fr/mr/binary/libgmp10/2:6.2.1+dfsg-3/binfiles?fileinfo=1 Get binary package info: libgnutls30=3.7.3-4+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libgnutls30/3.7.3-4+b1/binfiles?fileinfo=1 Get binary package info: libgomp1=12-20220302-1 Binary URL: http://snapshot.notset.fr/mr/binary/libgomp1/12-20220302-1/binfiles?fileinfo=1 Get binary package info: libgpg-error0=1.43-3 Binary URL: http://snapshot.notset.fr/mr/binary/libgpg-error0/1.43-3/binfiles?fileinfo=1 Get binary package info: libgssapi-krb5-2=1.19.2-2 Binary URL: http://snapshot.notset.fr/mr/binary/libgssapi-krb5-2/1.19.2-2/binfiles?fileinfo=1 Get binary package info: libgtest-dev=1.11.0-3 Binary URL: http://snapshot.notset.fr/mr/binary/libgtest-dev/1.11.0-3/binfiles?fileinfo=1 Get binary package info: libhdf5-103-1=1.10.7+repack-4 Binary URL: http://snapshot.notset.fr/mr/binary/libhdf5-103-1/1.10.7+repack-4/binfiles?fileinfo=1 Get binary package info: libhdf5-cpp-103-1=1.10.7+repack-4 Binary URL: http://snapshot.notset.fr/mr/binary/libhdf5-cpp-103-1/1.10.7+repack-4/binfiles?fileinfo=1 Get binary package info: libhdf5-dev=1.10.7+repack-4 Binary URL: http://snapshot.notset.fr/mr/binary/libhdf5-dev/1.10.7+repack-4/binfiles?fileinfo=1 Get binary package info: libhdf5-fortran-102=1.10.7+repack-4 Binary URL: http://snapshot.notset.fr/mr/binary/libhdf5-fortran-102/1.10.7+repack-4/binfiles?fileinfo=1 Get binary package info: libhdf5-hl-100=1.10.7+repack-4 Binary URL: http://snapshot.notset.fr/mr/binary/libhdf5-hl-100/1.10.7+repack-4/binfiles?fileinfo=1 Get binary package info: libhdf5-hl-cpp-100=1.10.7+repack-4 Binary URL: http://snapshot.notset.fr/mr/binary/libhdf5-hl-cpp-100/1.10.7+repack-4/binfiles?fileinfo=1 Get binary package info: libhdf5-hl-fortran-100=1.10.7+repack-4 Binary URL: http://snapshot.notset.fr/mr/binary/libhdf5-hl-fortran-100/1.10.7+repack-4/binfiles?fileinfo=1 Get binary package info: libhogweed6=3.7.3-1 Binary URL: http://snapshot.notset.fr/mr/binary/libhogweed6/3.7.3-1/binfiles?fileinfo=1 Get binary package info: libhts-dev=1.13+ds-2 Binary URL: http://snapshot.notset.fr/mr/binary/libhts-dev/1.13+ds-2/binfiles?fileinfo=1 Get binary package info: libhts3=1.13+ds-2 Binary URL: http://snapshot.notset.fr/mr/binary/libhts3/1.13+ds-2/binfiles?fileinfo=1 Get binary package info: libhtscodecs2=1.2.1-1 Binary URL: http://snapshot.notset.fr/mr/binary/libhtscodecs2/1.2.1-1/binfiles?fileinfo=1 Get binary package info: libicu67=67.1-7 Binary URL: http://snapshot.notset.fr/mr/binary/libicu67/67.1-7/binfiles?fileinfo=1 Get binary package info: libidn2-0=2.3.2-2 Binary URL: http://snapshot.notset.fr/mr/binary/libidn2-0/2.3.2-2/binfiles?fileinfo=1 Get binary package info: libisl23=0.24-2 Binary URL: http://snapshot.notset.fr/mr/binary/libisl23/0.24-2/binfiles?fileinfo=1 Get binary package info: libitm1=12-20220302-1 Binary URL: http://snapshot.notset.fr/mr/binary/libitm1/12-20220302-1/binfiles?fileinfo=1 Get binary package info: libjpeg-dev=1:2.1.2-1 Binary URL: http://snapshot.notset.fr/mr/binary/libjpeg-dev/1:2.1.2-1/binfiles?fileinfo=1 Get binary package info: libjpeg62-turbo=1:2.1.2-1 Binary URL: http://snapshot.notset.fr/mr/binary/libjpeg62-turbo/1:2.1.2-1/binfiles?fileinfo=1 Get binary package info: libjpeg62-turbo-dev=1:2.1.2-1 Binary URL: http://snapshot.notset.fr/mr/binary/libjpeg62-turbo-dev/1:2.1.2-1/binfiles?fileinfo=1 Get binary package info: libjsoncpp25=1.9.5-3 Binary URL: http://snapshot.notset.fr/mr/binary/libjsoncpp25/1.9.5-3/binfiles?fileinfo=1 Get binary package info: libk5crypto3=1.19.2-2 Binary URL: http://snapshot.notset.fr/mr/binary/libk5crypto3/1.19.2-2/binfiles?fileinfo=1 Get binary package info: libkeyutils1=1.6.1-3 Binary URL: http://snapshot.notset.fr/mr/binary/libkeyutils1/1.6.1-3/binfiles?fileinfo=1 Get binary package info: libkrb5-3=1.19.2-2 Binary URL: http://snapshot.notset.fr/mr/binary/libkrb5-3/1.19.2-2/binfiles?fileinfo=1 Get binary package info: libkrb5support0=1.19.2-2 Binary URL: http://snapshot.notset.fr/mr/binary/libkrb5support0/1.19.2-2/binfiles?fileinfo=1 Get binary package info: libldap-2.4-2=2.4.59+dfsg-1+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libldap-2.4-2/2.4.59+dfsg-1+b1/binfiles?fileinfo=1 Get binary package info: liblsan0=12-20220302-1 Binary URL: http://snapshot.notset.fr/mr/binary/liblsan0/12-20220302-1/binfiles?fileinfo=1 Get binary package info: liblz4-1=1.9.3-2 Binary URL: http://snapshot.notset.fr/mr/binary/liblz4-1/1.9.3-2/binfiles?fileinfo=1 Get binary package info: liblzma-dev=5.2.5-2 Binary URL: http://snapshot.notset.fr/mr/binary/liblzma-dev/5.2.5-2/binfiles?fileinfo=1 Get binary package info: liblzma5=5.2.5-2 Binary URL: http://snapshot.notset.fr/mr/binary/liblzma5/5.2.5-2/binfiles?fileinfo=1 Get binary package info: libmagic-mgc=1:5.41-2 Binary URL: http://snapshot.notset.fr/mr/binary/libmagic-mgc/1:5.41-2/binfiles?fileinfo=1 Get binary package info: libmagic1=1:5.41-2 Binary URL: http://snapshot.notset.fr/mr/binary/libmagic1/1:5.41-2/binfiles?fileinfo=1 Get binary package info: libmount1=2.37.3-1+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libmount1/2.37.3-1+b1/binfiles?fileinfo=1 Get binary package info: libmpc3=1.2.1-1 Binary URL: http://snapshot.notset.fr/mr/binary/libmpc3/1.2.1-1/binfiles?fileinfo=1 Get binary package info: libmpdec3=2.5.1-2 Binary URL: http://snapshot.notset.fr/mr/binary/libmpdec3/2.5.1-2/binfiles?fileinfo=1 Get binary package info: libmpfr6=4.1.0-3 Binary URL: http://snapshot.notset.fr/mr/binary/libmpfr6/4.1.0-3/binfiles?fileinfo=1 Get binary package info: libncurses6=6.3-2 Binary URL: http://snapshot.notset.fr/mr/binary/libncurses6/6.3-2/binfiles?fileinfo=1 Get binary package info: libncursesw6=6.3-2 Binary URL: http://snapshot.notset.fr/mr/binary/libncursesw6/6.3-2/binfiles?fileinfo=1 Get binary package info: libnettle8=3.7.3-1 Binary URL: http://snapshot.notset.fr/mr/binary/libnettle8/3.7.3-1/binfiles?fileinfo=1 Get binary package info: libnghttp2-14=1.43.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/libnghttp2-14/1.43.0-1/binfiles?fileinfo=1 Get binary package info: libnsl-dev=1.3.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/libnsl-dev/1.3.0-2/binfiles?fileinfo=1 Get binary package info: libnsl2=1.3.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/libnsl2/1.3.0-2/binfiles?fileinfo=1 Get binary package info: libp11-kit0=0.24.0-6 Binary URL: http://snapshot.notset.fr/mr/binary/libp11-kit0/0.24.0-6/binfiles?fileinfo=1 Get binary package info: libpam-modules=1.4.0-11 Binary URL: http://snapshot.notset.fr/mr/binary/libpam-modules/1.4.0-11/binfiles?fileinfo=1 Get binary package info: libpam-modules-bin=1.4.0-11 Binary URL: http://snapshot.notset.fr/mr/binary/libpam-modules-bin/1.4.0-11/binfiles?fileinfo=1 Get binary package info: libpam-runtime=1.4.0-11 Binary URL: http://snapshot.notset.fr/mr/binary/libpam-runtime/1.4.0-11/binfiles?fileinfo=1 Get binary package info: libpam0g=1.4.0-11 Binary URL: http://snapshot.notset.fr/mr/binary/libpam0g/1.4.0-11/binfiles?fileinfo=1 Get binary package info: libpbbam-dev=1.7.0+dfsg-2 Binary URL: http://snapshot.notset.fr/mr/binary/libpbbam-dev/1.7.0+dfsg-2/binfiles?fileinfo=1 Get binary package info: libpbbam1.7.0=1.7.0+dfsg-2 Binary URL: http://snapshot.notset.fr/mr/binary/libpbbam1.7.0/1.7.0+dfsg-2/binfiles?fileinfo=1 Get binary package info: libpbcopper-dev=2.0.0+dfsg-2 Binary URL: http://snapshot.notset.fr/mr/binary/libpbcopper-dev/2.0.0+dfsg-2/binfiles?fileinfo=1 Get binary package info: libpbcopper1.9.3=1.9.3+dfsg-2 Binary URL: http://snapshot.notset.fr/mr/binary/libpbcopper1.9.3/1.9.3+dfsg-2/binfiles?fileinfo=1 Get binary package info: libpbcopper2.0.0=2.0.0+dfsg-2 Binary URL: http://snapshot.notset.fr/mr/binary/libpbcopper2.0.0/2.0.0+dfsg-2/binfiles?fileinfo=1 Get binary package info: libpbdata-dev=5.3.5+dfsg-4 Binary URL: http://snapshot.notset.fr/mr/binary/libpbdata-dev/5.3.5+dfsg-4/binfiles?fileinfo=1 Get binary package info: libpbihdf-dev=5.3.5+dfsg-4 Binary URL: http://snapshot.notset.fr/mr/binary/libpbihdf-dev/5.3.5+dfsg-4/binfiles?fileinfo=1 Get binary package info: libpbseq-dev=5.3.5+dfsg-4 Binary URL: http://snapshot.notset.fr/mr/binary/libpbseq-dev/5.3.5+dfsg-4/binfiles?fileinfo=1 Get binary package info: libpcre2-8-0=10.39-3 Binary URL: http://snapshot.notset.fr/mr/binary/libpcre2-8-0/10.39-3/binfiles?fileinfo=1 Get binary package info: libpcre3=2:8.39-13 Binary URL: http://snapshot.notset.fr/mr/binary/libpcre3/2:8.39-13/binfiles?fileinfo=1 Get binary package info: libperl5.34=5.34.0-3 Binary URL: http://snapshot.notset.fr/mr/binary/libperl5.34/5.34.0-3/binfiles?fileinfo=1 Get binary package info: libpipeline1=1.5.5-1 Binary URL: http://snapshot.notset.fr/mr/binary/libpipeline1/1.5.5-1/binfiles?fileinfo=1 Get binary package info: libprocps8=2:3.3.17-7 Binary URL: http://snapshot.notset.fr/mr/binary/libprocps8/2:3.3.17-7/binfiles?fileinfo=1 Get binary package info: libpsl5=0.21.0-1.2 Binary URL: http://snapshot.notset.fr/mr/binary/libpsl5/0.21.0-1.2/binfiles?fileinfo=1 Get binary package info: libpython3-stdlib=3.9.8-1 Binary URL: http://snapshot.notset.fr/mr/binary/libpython3-stdlib/3.9.8-1/binfiles?fileinfo=1 Get binary package info: libpython3.9-minimal=3.9.10-2 Binary URL: http://snapshot.notset.fr/mr/binary/libpython3.9-minimal/3.9.10-2/binfiles?fileinfo=1 Get binary package info: libpython3.9-stdlib=3.9.10-2 Binary URL: http://snapshot.notset.fr/mr/binary/libpython3.9-stdlib/3.9.10-2/binfiles?fileinfo=1 Get binary package info: libquadmath0=12-20220302-1 Binary URL: http://snapshot.notset.fr/mr/binary/libquadmath0/12-20220302-1/binfiles?fileinfo=1 Get binary package info: libreadline8=8.1.2-1 Binary URL: http://snapshot.notset.fr/mr/binary/libreadline8/8.1.2-1/binfiles?fileinfo=1 Get binary package info: librhash0=1.4.2-1 Binary URL: http://snapshot.notset.fr/mr/binary/librhash0/1.4.2-1/binfiles?fileinfo=1 Get binary package info: librtmp1=2.4+20151223.gitfa8646d.1-2+b2 Binary URL: http://snapshot.notset.fr/mr/binary/librtmp1/2.4+20151223.gitfa8646d.1-2+b2/binfiles?fileinfo=1 Get binary package info: libsasl2-2=2.1.28+dfsg-2 Binary URL: http://snapshot.notset.fr/mr/binary/libsasl2-2/2.1.28+dfsg-2/binfiles?fileinfo=1 Get binary package info: libsasl2-modules-db=2.1.28+dfsg-2 Binary URL: http://snapshot.notset.fr/mr/binary/libsasl2-modules-db/2.1.28+dfsg-2/binfiles?fileinfo=1 Get binary package info: libseccomp2=2.5.3-2 Binary URL: http://snapshot.notset.fr/mr/binary/libseccomp2/2.5.3-2/binfiles?fileinfo=1 Get binary package info: libselinux1=3.3-1+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libselinux1/3.3-1+b1/binfiles?fileinfo=1 Get binary package info: libsigsegv2=2.14-1 Binary URL: http://snapshot.notset.fr/mr/binary/libsigsegv2/2.14-1/binfiles?fileinfo=1 Get binary package info: libsmartcols1=2.37.3-1+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libsmartcols1/2.37.3-1+b1/binfiles?fileinfo=1 Get binary package info: libsqlite3-0=3.38.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/libsqlite3-0/3.38.0-1/binfiles?fileinfo=1 Get binary package info: libssh2-1=1.10.0-3 Binary URL: http://snapshot.notset.fr/mr/binary/libssh2-1/1.10.0-3/binfiles?fileinfo=1 Get binary package info: libssl-dev=1.1.1m-1 Binary URL: http://snapshot.notset.fr/mr/binary/libssl-dev/1.1.1m-1/binfiles?fileinfo=1 Get binary package info: libssl1.1=1.1.1m-1 Binary URL: http://snapshot.notset.fr/mr/binary/libssl1.1/1.1.1m-1/binfiles?fileinfo=1 Get binary package info: libstdc++-11-dev=11.2.0-18 Binary URL: http://snapshot.notset.fr/mr/binary/libstdc++-11-dev/11.2.0-18/binfiles?fileinfo=1 Get binary package info: libstdc++6=12-20220302-1 Binary URL: http://snapshot.notset.fr/mr/binary/libstdc++6/12-20220302-1/binfiles?fileinfo=1 Get binary package info: libsub-override-perl=0.09-2 Binary URL: http://snapshot.notset.fr/mr/binary/libsub-override-perl/0.09-2/binfiles?fileinfo=1 Get binary package info: libsystemd0=250.3-2 Binary URL: http://snapshot.notset.fr/mr/binary/libsystemd0/250.3-2/binfiles?fileinfo=1 Get binary package info: libsz2=1.0.6-1 Binary URL: http://snapshot.notset.fr/mr/binary/libsz2/1.0.6-1/binfiles?fileinfo=1 Get binary package info: libtasn1-6=4.18.0-4 Binary URL: http://snapshot.notset.fr/mr/binary/libtasn1-6/4.18.0-4/binfiles?fileinfo=1 Get binary package info: libtinfo6=6.3-2 Binary URL: http://snapshot.notset.fr/mr/binary/libtinfo6/6.3-2/binfiles?fileinfo=1 Get binary package info: libtirpc-common=1.3.2-2 Binary URL: http://snapshot.notset.fr/mr/binary/libtirpc-common/1.3.2-2/binfiles?fileinfo=1 Get binary package info: libtirpc-dev=1.3.2-2 Binary URL: http://snapshot.notset.fr/mr/binary/libtirpc-dev/1.3.2-2/binfiles?fileinfo=1 Get binary package info: libtirpc3=1.3.2-2 Binary URL: http://snapshot.notset.fr/mr/binary/libtirpc3/1.3.2-2/binfiles?fileinfo=1 Get binary package info: libtool=2.4.6-15 Binary URL: http://snapshot.notset.fr/mr/binary/libtool/2.4.6-15/binfiles?fileinfo=1 Get binary package info: libtsan0=11.2.0-18 Binary URL: http://snapshot.notset.fr/mr/binary/libtsan0/11.2.0-18/binfiles?fileinfo=1 Get binary package info: libubsan1=12-20220302-1 Binary URL: http://snapshot.notset.fr/mr/binary/libubsan1/12-20220302-1/binfiles?fileinfo=1 Get binary package info: libuchardet0=0.0.7-1 Binary URL: http://snapshot.notset.fr/mr/binary/libuchardet0/0.0.7-1/binfiles?fileinfo=1 Get binary package info: libudev1=250.3-2 Binary URL: http://snapshot.notset.fr/mr/binary/libudev1/250.3-2/binfiles?fileinfo=1 Get binary package info: libunistring2=1.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/libunistring2/1.0-1/binfiles?fileinfo=1 Get binary package info: libuuid1=2.37.3-1+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libuuid1/2.37.3-1+b1/binfiles?fileinfo=1 Get binary package info: libuv1=1.43.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/libuv1/1.43.0-1/binfiles?fileinfo=1 Get binary package info: libxml2=2.9.13+dfsg-1 Binary URL: http://snapshot.notset.fr/mr/binary/libxml2/2.9.13+dfsg-1/binfiles?fileinfo=1 Get binary package info: libzstd1=1.4.8+dfsg-3 Binary URL: http://snapshot.notset.fr/mr/binary/libzstd1/1.4.8+dfsg-3/binfiles?fileinfo=1 Get binary package info: linux-libc-dev=5.16.11-1 Binary URL: http://snapshot.notset.fr/mr/binary/linux-libc-dev/5.16.11-1/binfiles?fileinfo=1 Get binary package info: login=1:4.11.1+dfsg1-2 Binary URL: http://snapshot.notset.fr/mr/binary/login/1:4.11.1+dfsg1-2/binfiles?fileinfo=1 Get binary package info: lsb-base=11.1.0 Binary URL: http://snapshot.notset.fr/mr/binary/lsb-base/11.1.0/binfiles?fileinfo=1 Get binary package info: m4=1.4.18-5 Binary URL: http://snapshot.notset.fr/mr/binary/m4/1.4.18-5/binfiles?fileinfo=1 Get binary package info: make=4.3-4.1 Binary URL: http://snapshot.notset.fr/mr/binary/make/4.3-4.1/binfiles?fileinfo=1 Get binary package info: man-db=2.10.1-1 Binary URL: http://snapshot.notset.fr/mr/binary/man-db/2.10.1-1/binfiles?fileinfo=1 Get binary package info: mawk=1.3.4.20200120-3+b1 Binary URL: http://snapshot.notset.fr/mr/binary/mawk/1.3.4.20200120-3+b1/binfiles?fileinfo=1 Get binary package info: media-types=6.0.0 Binary URL: http://snapshot.notset.fr/mr/binary/media-types/6.0.0/binfiles?fileinfo=1 Get binary package info: meson=0.61.2-1 Binary URL: http://snapshot.notset.fr/mr/binary/meson/0.61.2-1/binfiles?fileinfo=1 Get binary package info: ncurses-base=6.3-2 Binary URL: http://snapshot.notset.fr/mr/binary/ncurses-base/6.3-2/binfiles?fileinfo=1 Get binary package info: ncurses-bin=6.3-2 Binary URL: http://snapshot.notset.fr/mr/binary/ncurses-bin/6.3-2/binfiles?fileinfo=1 Get binary package info: ninja-build=1.10.1-1 Binary URL: http://snapshot.notset.fr/mr/binary/ninja-build/1.10.1-1/binfiles?fileinfo=1 Get binary package info: patch=2.7.6-7 Binary URL: http://snapshot.notset.fr/mr/binary/patch/2.7.6-7/binfiles?fileinfo=1 Get binary package info: perl=5.34.0-3 Binary URL: http://snapshot.notset.fr/mr/binary/perl/5.34.0-3/binfiles?fileinfo=1 Get binary package info: perl-base=5.34.0-3 Binary URL: http://snapshot.notset.fr/mr/binary/perl-base/5.34.0-3/binfiles?fileinfo=1 Get binary package info: perl-modules-5.34=5.34.0-3 Binary URL: http://snapshot.notset.fr/mr/binary/perl-modules-5.34/5.34.0-3/binfiles?fileinfo=1 Get binary package info: pkg-config=0.29.2-1 Binary URL: http://snapshot.notset.fr/mr/binary/pkg-config/0.29.2-1/binfiles?fileinfo=1 Get binary package info: po-debconf=1.0.21+nmu1 Binary URL: http://snapshot.notset.fr/mr/binary/po-debconf/1.0.21+nmu1/binfiles?fileinfo=1 Get binary package info: procps=2:3.3.17-7 Binary URL: http://snapshot.notset.fr/mr/binary/procps/2:3.3.17-7/binfiles?fileinfo=1 Get binary package info: python3=3.9.8-1 Binary URL: http://snapshot.notset.fr/mr/binary/python3/3.9.8-1/binfiles?fileinfo=1 Get binary package info: python3-distutils=3.9.10-1 Binary URL: http://snapshot.notset.fr/mr/binary/python3-distutils/3.9.10-1/binfiles?fileinfo=1 Get binary package info: python3-lib2to3=3.9.10-1 Binary URL: http://snapshot.notset.fr/mr/binary/python3-lib2to3/3.9.10-1/binfiles?fileinfo=1 Get binary package info: python3-minimal=3.9.8-1 Binary URL: http://snapshot.notset.fr/mr/binary/python3-minimal/3.9.8-1/binfiles?fileinfo=1 Get binary package info: python3-pkg-resources=59.6.0-1.2 Binary URL: http://snapshot.notset.fr/mr/binary/python3-pkg-resources/59.6.0-1.2/binfiles?fileinfo=1 Get binary package info: python3.9=3.9.10-2 Binary URL: http://snapshot.notset.fr/mr/binary/python3.9/3.9.10-2/binfiles?fileinfo=1 Get binary package info: python3.9-minimal=3.9.10-2 Binary URL: http://snapshot.notset.fr/mr/binary/python3.9-minimal/3.9.10-2/binfiles?fileinfo=1 Get binary package info: readline-common=8.1.2-1 Binary URL: http://snapshot.notset.fr/mr/binary/readline-common/8.1.2-1/binfiles?fileinfo=1 Get binary package info: rpcsvc-proto=1.4.2-4 Binary URL: http://snapshot.notset.fr/mr/binary/rpcsvc-proto/1.4.2-4/binfiles?fileinfo=1 Get binary package info: sed=4.8-1 Binary URL: http://snapshot.notset.fr/mr/binary/sed/4.8-1/binfiles?fileinfo=1 Get binary package info: sensible-utils=0.0.17 Binary URL: http://snapshot.notset.fr/mr/binary/sensible-utils/0.0.17/binfiles?fileinfo=1 Get binary package info: sysvinit-utils=3.01-1 Binary URL: http://snapshot.notset.fr/mr/binary/sysvinit-utils/3.01-1/binfiles?fileinfo=1 Get binary package info: tar=1.34+dfsg-1 Binary URL: http://snapshot.notset.fr/mr/binary/tar/1.34+dfsg-1/binfiles?fileinfo=1 Get binary package info: tzdata=2021e-1 Binary URL: http://snapshot.notset.fr/mr/binary/tzdata/2021e-1/binfiles?fileinfo=1 Get binary package info: util-linux=2.37.3-1+b1 Binary URL: http://snapshot.notset.fr/mr/binary/util-linux/2.37.3-1+b1/binfiles?fileinfo=1 Get binary package info: xz-utils=5.2.5-2 Binary URL: http://snapshot.notset.fr/mr/binary/xz-utils/5.2.5-2/binfiles?fileinfo=1 Get binary package info: zlib1g=1:1.2.11.dfsg-2 Binary URL: http://snapshot.notset.fr/mr/binary/zlib1g/1:1.2.11.dfsg-2/binfiles?fileinfo=1 Get binary package info: zlib1g-dev=1:1.2.11.dfsg-2 Binary URL: http://snapshot.notset.fr/mr/binary/zlib1g-dev/1:1.2.11.dfsg-2/binfiles?fileinfo=1 Remaining packages to be found: 238 Timestamp source (42 packages): deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220310T035035Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220130T030506Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211018T024645Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220224T210146Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220123T025342Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220220T025720Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220225T025859Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220212T154028Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211214T030236Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211103T025035Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211122T030439Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211212T031254Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220217T154341Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211118T025207Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220112T025121Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210901T090918Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210927T025314Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210902T030735Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211202T085046Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220215T025613Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210823T024636Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211205T025806Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211210T031943Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220104T153720Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211223T031038Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210816T024705Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220306T025301Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211109T030457Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220216T030243Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211118T205424Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220106T025822Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220124T155715Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211123T025155Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211220T093239Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220208T091208Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220302T025935Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220303T024745Z/ bookworm main Remaining packages to be found: 3 Timestamp source (2 packages): deb http://snapshot.notset.fr/archive/debian/20220304T025152Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211226T092955Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220129T210618Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210911T144836Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220211T025424Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220125T033125Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210930T025245Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211108T025858Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220307T034739Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211221T091706Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210909T025907Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220101T024315Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220218T213206Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211225T030209Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210903T030245Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220116T032954Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220122T031231Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220217T030151Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220124T035008Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210818T085356Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211017T024714Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220201T025006Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211019T025145Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211208T025308Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211124T025830Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220202T030237Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220212T031344Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220121T030821Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211008T024925Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220129T025638Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220311T031816Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210824T024320Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211030T025126Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220225T213047Z/ unstable main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220310T035035Z/ unstable main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220305T205145Z/ unstable main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220220T150309Z/ unstable main Remaining packages to be found: 2 Timestamp source (2 packages): deb http://snapshot.notset.fr/archive/debian/20220307T154442Z/ unstable main New buildinfo file: /tmp/blasr-5.3.5+dfsg-3gl_f1m3j/blasr_5.3.5+dfsg-3_amd64.buildinfo env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf:all=2.71-2 automake:all=1:1.16.5-1.1 autopoint:all=0.21-4 autotools-dev:all=20220109.1 base-files:amd64=12.2 base-passwd:amd64=3.5.52 bash:amd64=5.1-6 binutils:amd64=2.38-2 binutils-common:amd64=2.38-2 binutils-x86-64-linux-gnu:amd64=2.38-2 bsdextrautils:amd64=2.37.3-1+b1 bsdutils:amd64=1:2.37.3-1+b1 build-essential:amd64=12.9 bzip2:amd64=1.0.8-5 cmake:amd64=3.22.1-1+b1 cmake-data:all=3.22.1-1 coreutils:amd64=8.32-4.1 cpp:amd64=4:11.2.0-2 cpp-11:amd64=11.2.0-18 dash:amd64=0.5.11+git20210903+057cd650a4ed-7 debconf:all=1.5.79 debhelper:all=13.6 debianutils:amd64=5.7-0.1 dh-autoreconf:all=20 dh-elpa-helper:all=2.0.10 dh-strip-nondeterminism:all=1.13.0-1 diffutils:amd64=1:3.7-5 dpkg:amd64=1.21.1 dpkg-dev:all=1.21.1 dwz:amd64=0.14-1 emacsen-common:all=3.0.4 file:amd64=1:5.41-2 findutils:amd64=4.9.0-2 g++:amd64=4:11.2.0-2 g++-11:amd64=11.2.0-18 gcc:amd64=4:11.2.0-2 gcc-11:amd64=11.2.0-18 gcc-11-base:amd64=11.2.0-18 gcc-12-base:amd64=12-20220302-1 gettext:amd64=0.21-4 gettext-base:amd64=0.21-4 googletest:all=1.11.0-3 grep:amd64=3.7-1 groff-base:amd64=1.22.4-8 gzip:amd64=1.10-4 hdf5-helpers:amd64=1.10.7+repack-4 hostname:amd64=3.23 init-system-helpers:all=1.62 intltool-debian:all=0.35.0+20060710.5 libacl1:amd64=2.3.1-1 libaec-dev:amd64=1.0.6-1 libaec0:amd64=1.0.6-1 libarchive-zip-perl:all=1.68-1 libarchive13:amd64=3.5.2-1 libasan6:amd64=11.2.0-18 libatomic1:amd64=12-20220302-1 libattr1:amd64=1:2.5.1-1 libaudit-common:all=1:3.0.7-1 libaudit1:amd64=1:3.0.7-1 libbinutils:amd64=2.38-2 libblasr-dev:amd64=5.3.5+dfsg-4 libblasr5.3.5:amd64=5.3.5+dfsg-4 libblkid1:amd64=2.37.3-1+b1 libboost-dev:amd64=1.74.0.3 libboost1.74-dev:amd64=1.74.0-14 libbrotli1:amd64=1.0.9-2+b3 libbz2-1.0:amd64=1.0.8-5 libc-bin:amd64=2.33-7 libc-dev-bin:amd64=2.33-7 libc6:amd64=2.33-7 libc6-dev:amd64=2.33-7 libcap-ng0:amd64=0.7.9-2.2+b1 libcap2:amd64=1:2.44-1 libcc1-0:amd64=12-20220302-1 libcom-err2:amd64=1.46.5-2 libcrypt-dev:amd64=1:4.4.27-1.1 libcrypt1:amd64=1:4.4.27-1.1 libctf-nobfd0:amd64=2.38-2 libctf0:amd64=2.38-2 libcurl3-gnutls:amd64=7.82.0-1 libcurl4:amd64=7.82.0-1 libcurl4-gnutls-dev:amd64=7.82.0-1 libdb5.3:amd64=5.3.28+dfsg1-0.8 libdebconfclient0:amd64=0.261 libdebhelper-perl:all=13.6 libdeflate-dev:amd64=1.10-1 libdeflate0:amd64=1.10-1 libdpkg-perl:all=1.21.1 libelf1:amd64=0.186-1 libexpat1:amd64=2.4.7-1 libffi8:amd64=3.4.2-4 libfile-stripnondeterminism-perl:all=1.13.0-1 libgcc-11-dev:amd64=11.2.0-18 libgcc-s1:amd64=12-20220302-1 libgcrypt20:amd64=1.9.4-5 libgdbm-compat4:amd64=1.23-1 libgdbm6:amd64=1.23-1 libgfortran5:amd64=12-20220302-1 libglib2.0-0:amd64=2.70.4-1 libgmp10:amd64=2:6.2.1+dfsg-3 libgnutls30:amd64=3.7.3-4+b1 libgomp1:amd64=12-20220302-1 libgpg-error0:amd64=1.43-3 libgssapi-krb5-2:amd64=1.19.2-2 libgtest-dev:amd64=1.11.0-3 libhdf5-103-1:amd64=1.10.7+repack-4 libhdf5-cpp-103-1:amd64=1.10.7+repack-4 libhdf5-dev:amd64=1.10.7+repack-4 libhdf5-fortran-102:amd64=1.10.7+repack-4 libhdf5-hl-100:amd64=1.10.7+repack-4 libhdf5-hl-cpp-100:amd64=1.10.7+repack-4 libhdf5-hl-fortran-100:amd64=1.10.7+repack-4 libhogweed6:amd64=3.7.3-1 libhts-dev:amd64=1.13+ds-2 libhts3:amd64=1.13+ds-2 libhtscodecs2:amd64=1.2.1-1 libicu67:amd64=67.1-7 libidn2-0:amd64=2.3.2-2 libisl23:amd64=0.24-2 libitm1:amd64=12-20220302-1 libjpeg-dev:amd64=1:2.1.2-1 libjpeg62-turbo:amd64=1:2.1.2-1 libjpeg62-turbo-dev:amd64=1:2.1.2-1 libjsoncpp25:amd64=1.9.5-3 libk5crypto3:amd64=1.19.2-2 libkeyutils1:amd64=1.6.1-3 libkrb5-3:amd64=1.19.2-2 libkrb5support0:amd64=1.19.2-2 libldap-2.4-2:amd64=2.4.59+dfsg-1+b1 liblsan0:amd64=12-20220302-1 liblz4-1:amd64=1.9.3-2 liblzma-dev:amd64=5.2.5-2 liblzma5:amd64=5.2.5-2 libmagic-mgc:amd64=1:5.41-2 libmagic1:amd64=1:5.41-2 libmount1:amd64=2.37.3-1+b1 libmpc3:amd64=1.2.1-1 libmpdec3:amd64=2.5.1-2 libmpfr6:amd64=4.1.0-3 libncurses6:amd64=6.3-2 libncursesw6:amd64=6.3-2 libnettle8:amd64=3.7.3-1 libnghttp2-14:amd64=1.43.0-1 libnsl-dev:amd64=1.3.0-2 libnsl2:amd64=1.3.0-2 libp11-kit0:amd64=0.24.0-6 libpam-modules:amd64=1.4.0-11 libpam-modules-bin:amd64=1.4.0-11 libpam-runtime:all=1.4.0-11 libpam0g:amd64=1.4.0-11 libpbbam-dev:amd64=1.7.0+dfsg-2 libpbbam1.7.0:amd64=1.7.0+dfsg-2 libpbcopper-dev:amd64=2.0.0+dfsg-2 libpbcopper1.9.3:amd64=1.9.3+dfsg-2 libpbcopper2.0.0:amd64=2.0.0+dfsg-2 libpbdata-dev:amd64=5.3.5+dfsg-4 libpbihdf-dev:amd64=5.3.5+dfsg-4 libpbseq-dev:amd64=5.3.5+dfsg-4 libpcre2-8-0:amd64=10.39-3 libpcre3:amd64=2:8.39-13 libperl5.34:amd64=5.34.0-3 libpipeline1:amd64=1.5.5-1 libprocps8:amd64=2:3.3.17-7 libpsl5:amd64=0.21.0-1.2 libpython3-stdlib:amd64=3.9.8-1 libpython3.9-minimal:amd64=3.9.10-2 libpython3.9-stdlib:amd64=3.9.10-2 libquadmath0:amd64=12-20220302-1 libreadline8:amd64=8.1.2-1 librhash0:amd64=1.4.2-1 librtmp1:amd64=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2:amd64=2.1.28+dfsg-2 libsasl2-modules-db:amd64=2.1.28+dfsg-2 libseccomp2:amd64=2.5.3-2 libselinux1:amd64=3.3-1+b1 libsigsegv2:amd64=2.14-1 libsmartcols1:amd64=2.37.3-1+b1 libsqlite3-0:amd64=3.38.0-1 libssh2-1:amd64=1.10.0-3 libssl-dev:amd64=1.1.1m-1 libssl1.1:amd64=1.1.1m-1 libstdc++-11-dev:amd64=11.2.0-18 libstdc++6:amd64=12-20220302-1 libsub-override-perl:all=0.09-2 libsystemd0:amd64=250.3-2 libsz2:amd64=1.0.6-1 libtasn1-6:amd64=4.18.0-4 libtinfo6:amd64=6.3-2 libtirpc-common:all=1.3.2-2 libtirpc-dev:amd64=1.3.2-2 libtirpc3:amd64=1.3.2-2 libtool:all=2.4.6-15 libtsan0:amd64=11.2.0-18 libubsan1:amd64=12-20220302-1 libuchardet0:amd64=0.0.7-1 libudev1:amd64=250.3-2 libunistring2:amd64=1.0-1 libuuid1:amd64=2.37.3-1+b1 libuv1:amd64=1.43.0-1 libxml2:amd64=2.9.13+dfsg-1 libzstd1:amd64=1.4.8+dfsg-3 linux-libc-dev:amd64=5.16.11-1 login:amd64=1:4.11.1+dfsg1-2 lsb-base:all=11.1.0 m4:amd64=1.4.18-5 make:amd64=4.3-4.1 man-db:amd64=2.10.1-1 mawk:amd64=1.3.4.20200120-3+b1 media-types:all=6.0.0 meson:all=0.61.2-1 ncurses-base:all=6.3-2 ncurses-bin:amd64=6.3-2 ninja-build:amd64=1.10.1-1 patch:amd64=2.7.6-7 perl:amd64=5.34.0-3 perl-base:amd64=5.34.0-3 perl-modules-5.34:all=5.34.0-3 pkg-config:amd64=0.29.2-1 po-debconf:all=1.0.21+nmu1 procps:amd64=2:3.3.17-7 python3:amd64=3.9.8-1 python3-distutils:all=3.9.10-1 python3-lib2to3:all=3.9.10-1 python3-minimal:amd64=3.9.8-1 python3-pkg-resources:all=59.6.0-1.2 python3.9:amd64=3.9.10-2 python3.9-minimal:amd64=3.9.10-2 readline-common:all=8.1.2-1 rpcsvc-proto:amd64=1.4.2-4 sed:amd64=4.8-1 sensible-utils:all=0.0.17 sysvinit-utils:amd64=3.01-1 tar:amd64=1.34+dfsg-1 tzdata:all=2021e-1 util-linux:amd64=2.37.3-1+b1 xz-utils:amd64=5.2.5-2 zlib1g:amd64=1:1.2.11.dfsg-2 zlib1g-dev:amd64=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220310T035035Z/ unstable main deb-src http://snapshot.notset.fr/archive/debian/20220310T035035Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220304T025152Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220307T154442Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d blasr=5.3.5+dfsg-3 && mkdir -p /build/blasr-u1h0OJ && dpkg-source --no-check -x /*.dsc /build/blasr-u1h0OJ/blasr-5.3.5+dfsg && chown -R builduser:builduser /build/blasr-u1h0OJ" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/blasr-u1h0OJ/blasr-5.3.5+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1646736993" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/blasr-u1h0OJ /tmp/blasr-5.3.5+dfsg-3gl_f1m3j bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20220224T210146Z bookworm main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.n2gkf1JfmQ as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.n2gkf1JfmQ Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.3-1+b1). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 136 kB of archives. After this operation, 406 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20220224T210146Z bookworm/main amd64 libfakeroot amd64 1.27-1 [48.5 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220224T210146Z bookworm/main amd64 fakeroot amd64 1.27-1 [87.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 136 kB in 0s (944 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4693 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.27-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.27-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.27-1_amd64.deb ... Unpacking fakeroot (1.27-1) ... Setting up libfakeroot:amd64 (1.27-1) ... Setting up fakeroot (1.27-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-7) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220310T035035Z/ unstable main deb-src http://snapshot.notset.fr/archive/debian/20220310T035035Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220304T025152Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220307T154442Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.n2gkf1JfmQ Get:1 http://snapshot.notset.fr/archive/debian/20220310T035035Z unstable InRelease [165 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:3 http://snapshot.notset.fr/archive/debian/20220304T025152Z bookworm InRelease [130 kB] Get:4 http://snapshot.notset.fr/archive/debian/20220307T154442Z unstable InRelease [165 kB] Ign:5 http://snapshot.notset.fr/archive/debian/20220310T035035Z unstable/main Sources Ign:6 http://snapshot.notset.fr/archive/debian/20220310T035035Z unstable/main amd64 Packages Ign:5 http://snapshot.notset.fr/archive/debian/20220310T035035Z unstable/main Sources Ign:6 http://snapshot.notset.fr/archive/debian/20220310T035035Z unstable/main amd64 Packages Ign:5 http://snapshot.notset.fr/archive/debian/20220310T035035Z unstable/main Sources Ign:6 http://snapshot.notset.fr/archive/debian/20220310T035035Z unstable/main amd64 Packages Get:5 http://snapshot.notset.fr/archive/debian/20220310T035035Z unstable/main Sources [12.8 MB] Get:6 http://snapshot.notset.fr/archive/debian/20220310T035035Z unstable/main amd64 Packages [12.3 MB] Ign:7 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:8 http://snapshot.notset.fr/archive/debian/20220304T025152Z bookworm/main amd64 Packages Ign:9 http://snapshot.notset.fr/archive/debian/20220307T154442Z unstable/main amd64 Packages Ign:7 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:8 http://snapshot.notset.fr/archive/debian/20220304T025152Z bookworm/main amd64 Packages Ign:9 http://snapshot.notset.fr/archive/debian/20220307T154442Z unstable/main amd64 Packages Ign:7 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:8 http://snapshot.notset.fr/archive/debian/20220304T025152Z bookworm/main amd64 Packages Ign:9 http://snapshot.notset.fr/archive/debian/20220307T154442Z unstable/main amd64 Packages Get:7 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Get:8 http://snapshot.notset.fr/archive/debian/20220304T025152Z bookworm/main amd64 Packages [11.3 MB] Get:9 http://snapshot.notset.fr/archive/debian/20220307T154442Z unstable/main amd64 Packages [12.3 MB] Fetched 60.2 MB in 48s (1253 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.n2gkf1JfmQ I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d blasr=5.3.5+dfsg-3 && mkdir -p /build/blasr-u1h0OJ && dpkg-source --no-check -x /*.dsc /build/blasr-u1h0OJ/blasr-5.3.5+dfsg && chown -R builduser:builduser /build/blasr-u1h0OJ"' exec /tmp/mmdebstrap.n2gkf1JfmQ Reading package lists... NOTICE: 'blasr' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/blasr.git Please use: git clone https://salsa.debian.org/med-team/blasr.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 138 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20220310T035035Z unstable/main blasr 5.3.5+dfsg-3 (dsc) [2158 B] Get:2 http://snapshot.notset.fr/archive/debian/20220310T035035Z unstable/main blasr 5.3.5+dfsg-3 (tar) [124 kB] Get:3 http://snapshot.notset.fr/archive/debian/20220310T035035Z unstable/main blasr 5.3.5+dfsg-3 (diff) [10.9 kB] Fetched 138 kB in 0s (751 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'blasr_5.3.5+dfsg-3.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting blasr in /build/blasr-u1h0OJ/blasr-5.3.5+dfsg dpkg-source: info: unpacking blasr_5.3.5+dfsg.orig.tar.xz dpkg-source: info: unpacking blasr_5.3.5+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_pblibs.patch dpkg-source: info: applying 2to3.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/blasr-u1h0OJ/blasr-5.3.5+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1646736993" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.n2gkf1JfmQ dpkg-buildpackage: info: source package blasr dpkg-buildpackage: info: source version 5.3.5+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=meson dh_auto_clean -O--buildsystem=meson dh_autoreconf_clean -O--buildsystem=meson dh_clean -O--buildsystem=meson debian/rules binary-arch dh binary-arch --buildsystem=meson dh_update_autotools_config -a -O--buildsystem=meson dh_autoreconf -a -O--buildsystem=meson debian/rules override_dh_auto_configure make[1]: Entering directory '/build/blasr-u1h0OJ/blasr-5.3.5+dfsg' LDFLAGS="-L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5_cpp -lhdf5 -Wl,-z,relro" CPPFLAGS="-isystem /usr/include/hdf5/serial" dh_auto_configure -- -Dtests=false cd obj-x86_64-linux-gnu && LC_ALL=C.UTF-8 meson .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/x86_64-linux-gnu -Dtests=false The Meson build system Version: 0.61.2 Source dir: /build/blasr-u1h0OJ/blasr-5.3.5+dfsg Build dir: /build/blasr-u1h0OJ/blasr-5.3.5+dfsg/obj-x86_64-linux-gnu Build type: native build Project name: blasr Project version: 5.3.5 C++ compiler for the host machine: c++ (gcc 11.2.0 "c++ (Debian 11.2.0-18) 11.2.0") C++ linker for the host machine: c++ ld.bfd 2.38 Host machine cpu family: x86_64 Host machine cpu: x86_64 Compiler for C++ supports arguments -Wno-delete-non-virtual-dtor: YES Compiler for C++ supports arguments -Wno-non-virtual-dtor: YES Compiler for C++ supports arguments -Wno-unused-but-set-variable: YES Compiler for C++ supports arguments -Wno-unused-variable: YES Run-time dependency threads found: YES Found pkg-config: /usr/bin/pkg-config (0.29.2) Run-time dependency Boost found: YES 1.74.0 (/usr/include) Library pbbam found: YES Run-time dependency libblasr found: YES 5.3.5 Run-time dependency zlib found: YES 1.2.11 Run-time dependency htslib found: YES 1.13+ds Library pbcopper found: YES Configuring BlasrVersion.h using configuration Build targets in project: 5 blasr 5.3.5 User defined options buildtype : plain libdir : lib/x86_64-linux-gnu localstatedir: /var prefix : /usr sysconfdir : /etc wrap_mode : nodownload tests : false Found ninja-1.10.1 at /usr/bin/ninja make[1]: Leaving directory '/build/blasr-u1h0OJ/blasr-5.3.5+dfsg' dh_auto_build -a -O--buildsystem=meson cd obj-x86_64-linux-gnu && LC_ALL=C.UTF-8 ninja -j10 -v [1/25] /usr/bin/meson --internal vcstagger ../BlasrGitHash.h.in BlasrGitHash.h '' /build/blasr-u1h0OJ/blasr-5.3.5+dfsg @BLASR_GIT_SHA1@ '(.*)' /build/blasr-u1h0OJ/blasr-5.3.5+dfsg/git describe --always '--dirty=*' [2/25] c++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/blasr-u1h0OJ/blasr-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/extrautils_ExciseRepeats.cpp.o -MF libblasr_impl.a.p/extrautils_ExciseRepeats.cpp.o.d -o libblasr_impl.a.p/extrautils_ExciseRepeats.cpp.o -c ../extrautils/ExciseRepeats.cpp [3/25] c++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/blasr-u1h0OJ/blasr-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/extrautils_SALS.cpp.o -MF libblasr_impl.a.p/extrautils_SALS.cpp.o.d -o libblasr_impl.a.p/extrautils_SALS.cpp.o -c ../extrautils/SALS.cpp [4/25] c++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/blasr-u1h0OJ/blasr-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/extrautils_SimpleShredder.cpp.o -MF libblasr_impl.a.p/extrautils_SimpleShredder.cpp.o.d -o libblasr_impl.a.p/extrautils_SimpleShredder.cpp.o -c ../extrautils/SimpleShredder.cpp [5/25] c++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/blasr-u1h0OJ/blasr-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/extrautils_BwtToSuffixArray.cpp.o -MF libblasr_impl.a.p/extrautils_BwtToSuffixArray.cpp.o.d -o libblasr_impl.a.p/extrautils_BwtToSuffixArray.cpp.o -c ../extrautils/BwtToSuffixArray.cpp [6/25] c++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/blasr-u1h0OJ/blasr-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/extrautils_SAModify.cpp.o -MF libblasr_impl.a.p/extrautils_SAModify.cpp.o.d -o libblasr_impl.a.p/extrautils_SAModify.cpp.o -c ../extrautils/SAModify.cpp [7/25] c++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/blasr-u1h0OJ/blasr-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/extrautils_Evolve.cpp.o -MF libblasr_impl.a.p/extrautils_Evolve.cpp.o.d -o libblasr_impl.a.p/extrautils_Evolve.cpp.o -c ../extrautils/Evolve.cpp [8/25] c++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/blasr-u1h0OJ/blasr-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/extrautils_SuffixArrayToBWT.cpp.o -MF libblasr_impl.a.p/extrautils_SuffixArrayToBWT.cpp.o.d -o libblasr_impl.a.p/extrautils_SuffixArrayToBWT.cpp.o -c ../extrautils/SuffixArrayToBWT.cpp In file included from ../extrautils/SuffixArrayToBWT.cpp:4: /usr/include/pbseq/alignment/bwt/BWT.hpp: In member function ‘void Bwt::InitializeDNACharacterCount() [with T_BWT_Sequence = PackedDNASequence; T_DNASequence = FASTASequence]’: /usr/include/pbseq/alignment/bwt/BWT.hpp:192:21: warning: this statement may fall through [-Wimplicit-fallthrough=] 192 | charCount[0]++; | ^~~~~~~~~ /usr/include/pbseq/alignment/bwt/BWT.hpp:193:17: note: here 193 | case 0: //A | ^~~~ /usr/include/pbseq/alignment/bwt/BWT.hpp:194:21: warning: this statement may fall through [-Wimplicit-fallthrough=] 194 | charCount[1]++; | ^~~~~~~~~ /usr/include/pbseq/alignment/bwt/BWT.hpp:195:17: note: here 195 | case 1: //C | ^~~~ /usr/include/pbseq/alignment/bwt/BWT.hpp:196:21: warning: this statement may fall through [-Wimplicit-fallthrough=] 196 | charCount[2]++; | ^~~~~~~~~ /usr/include/pbseq/alignment/bwt/BWT.hpp:197:17: note: here 197 | case 2: //G | ^~~~ /usr/include/pbseq/alignment/bwt/BWT.hpp:198:21: warning: this statement may fall through [-Wimplicit-fallthrough=] 198 | charCount[3]++; | ^~~~~~~~~ /usr/include/pbseq/alignment/bwt/BWT.hpp:199:17: note: here 199 | case 3: //T | ^~~~ /usr/include/pbseq/alignment/bwt/BWT.hpp:200:21: warning: this statement may fall through [-Wimplicit-fallthrough=] 200 | charCount[4]++; | ^~~~~~~~~ /usr/include/pbseq/alignment/bwt/BWT.hpp:201:17: note: here 201 | case 4: //N | ^~~~ [9/25] c++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/blasr-u1h0OJ/blasr-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/extrautils_BuildSequenceDB.cpp.o -MF libblasr_impl.a.p/extrautils_BuildSequenceDB.cpp.o.d -o libblasr_impl.a.p/extrautils_BuildSequenceDB.cpp.o -c ../extrautils/BuildSequenceDB.cpp [10/25] c++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/blasr-u1h0OJ/blasr-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/extrautils_SWMatcher.cpp.o -MF libblasr_impl.a.p/extrautils_SWMatcher.cpp.o.d -o libblasr_impl.a.p/extrautils_SWMatcher.cpp.o -c ../extrautils/SWMatcher.cpp In file included from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../extrautils/SWMatcher.cpp:6: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’: /usr/include/c++/11/bits/alloc_traits.h:516:17: required from ‘static void std::allocator_traits >::construct(std::allocator_traits >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits >::allocator_type = std::allocator]’ /usr/include/c++/11/bits/stl_vector.h:1192:30: required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’ /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29: required from here /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy] 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’ 103 | Alignment &operator=(const Alignment &rhs); | ^~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy] 58 | class Alignment : public AlignmentStats | ^~~~~~~~~ In file included from /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:8, from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../extrautils/SWMatcher.cpp:6: /usr/include/pbseq/alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’ 19 | AlignmentStats &operator=(const AlignmentStats &rhs); | ^~~~~~~~ In file included from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../extrautils/SWMatcher.cpp:6: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/11/bits/c++allocator.h:33, from /usr/include/c++/11/bits/allocator.h:46, from /usr/include/c++/11/string:41, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/ios:42, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from ../extrautils/SWMatcher.cpp:2: /usr/include/c++/11/ext/new_allocator.h:162:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here 162 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [11/25] c++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/blasr-u1h0OJ/blasr-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/extrautils_PrintTupleCountTable.cpp.o -MF libblasr_impl.a.p/extrautils_PrintTupleCountTable.cpp.o.d -o libblasr_impl.a.p/extrautils_PrintTupleCountTable.cpp.o -c ../extrautils/PrintTupleCountTable.cpp [12/25] c++ -Isawriter.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/blasr-u1h0OJ/blasr-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -DCMAKE_BUILD=1 -MD -MQ sawriter.p/utils_SAWriter.cpp.o -MF sawriter.p/utils_SAWriter.cpp.o.d -o sawriter.p/utils_SAWriter.cpp.o -c ../utils/SAWriter.cpp [13/25] c++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/blasr-u1h0OJ/blasr-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/utils_SamToM4.cpp.o -MF libblasr_impl.a.p/utils_SamToM4.cpp.o.d -o libblasr_impl.a.p/utils_SamToM4.cpp.o -c ../utils/SamToM4.cpp In file included from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../utils/SamToM4.cpp:21: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’: /usr/include/c++/11/bits/alloc_traits.h:516:17: required from ‘static void std::allocator_traits >::construct(std::allocator_traits >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits >::allocator_type = std::allocator]’ /usr/include/c++/11/bits/stl_vector.h:1192:30: required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’ /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29: required from here /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy] 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’ 103 | Alignment &operator=(const Alignment &rhs); | ^~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy] 58 | class Alignment : public AlignmentStats | ^~~~~~~~~ In file included from /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:8, from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../utils/SamToM4.cpp:21: /usr/include/pbseq/alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’ 19 | AlignmentStats &operator=(const AlignmentStats &rhs); | ^~~~~~~~ In file included from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../utils/SamToM4.cpp:21: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/11/bits/c++allocator.h:33, from /usr/include/c++/11/bits/allocator.h:46, from /usr/include/c++/11/string:41, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/ios:42, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from ../utils/SamToM4.cpp:19: /usr/include/c++/11/ext/new_allocator.h:162:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here 162 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [14/25] c++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/blasr-u1h0OJ/blasr-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/utils_PulseToFasta.cpp.o -MF libblasr_impl.a.p/utils_PulseToFasta.cpp.o.d -o libblasr_impl.a.p/utils_PulseToFasta.cpp.o -c ../utils/PulseToFasta.cpp [15/25] c++ -ItoAfg.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/blasr-u1h0OJ/blasr-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -DCMAKE_BUILD=1 -MD -MQ toAfg.p/utils_ToAfg.cpp.o -MF toAfg.p/utils_ToAfg.cpp.o.d -o toAfg.p/utils_ToAfg.cpp.o -c ../utils/ToAfg.cpp [16/25] c++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/blasr-u1h0OJ/blasr-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/extrautils_StoreQualityByContextFromCmpH5.cpp.o -MF libblasr_impl.a.p/extrautils_StoreQualityByContextFromCmpH5.cpp.o.d -o libblasr_impl.a.p/extrautils_StoreQualityByContextFromCmpH5.cpp.o -c ../extrautils/StoreQualityByContextFromCmpH5.cpp In file included from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from /usr/include/pbseq/alignment/format/StickAlignmentPrinter.hpp:8, from ../extrautils/StoreQualityByContextFromCmpH5.cpp:3: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’: /usr/include/c++/11/bits/alloc_traits.h:516:17: required from ‘static void std::allocator_traits >::construct(std::allocator_traits >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits >::allocator_type = std::allocator]’ /usr/include/c++/11/bits/stl_vector.h:1192:30: required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’ /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29: required from here /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy] 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’ 103 | Alignment &operator=(const Alignment &rhs); | ^~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy] 58 | class Alignment : public AlignmentStats | ^~~~~~~~~ In file included from /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:8, from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from /usr/include/pbseq/alignment/format/StickAlignmentPrinter.hpp:8, from ../extrautils/StoreQualityByContextFromCmpH5.cpp:3: /usr/include/pbseq/alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’ 19 | AlignmentStats &operator=(const AlignmentStats &rhs); | ^~~~~~~~ In file included from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from /usr/include/pbseq/alignment/format/StickAlignmentPrinter.hpp:8, from ../extrautils/StoreQualityByContextFromCmpH5.cpp:3: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/11/bits/c++allocator.h:33, from /usr/include/c++/11/bits/allocator.h:46, from /usr/include/c++/11/vector:64, from /usr/include/pbseq/alignment/datastructures/alignment/CmpFile.hpp:4, from ../extrautils/StoreQualityByContextFromCmpH5.cpp:1: /usr/include/c++/11/ext/new_allocator.h:162:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here 162 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [17/25] c++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/blasr-u1h0OJ/blasr-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/utils_SamToCmpH5.cpp.o -MF libblasr_impl.a.p/utils_SamToCmpH5.cpp.o.d -o libblasr_impl.a.p/utils_SamToCmpH5.cpp.o -c ../utils/SamToCmpH5.cpp In file included from /usr/include/pbseq/alignment/datastructures/alignment/AlignmentCandidate.hpp:6, from ../utils/SamToCmpH5.cpp:3: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’: /usr/include/c++/11/bits/alloc_traits.h:516:17: required from ‘static void std::allocator_traits >::construct(std::allocator_traits >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits >::allocator_type = std::allocator]’ /usr/include/c++/11/bits/stl_vector.h:1192:30: required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’ /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29: required from here /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy] 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’ 103 | Alignment &operator=(const Alignment &rhs); | ^~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy] 58 | class Alignment : public AlignmentStats | ^~~~~~~~~ In file included from /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:8, from /usr/include/pbseq/alignment/datastructures/alignment/AlignmentCandidate.hpp:6, from ../utils/SamToCmpH5.cpp:3: /usr/include/pbseq/alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’ 19 | AlignmentStats &operator=(const AlignmentStats &rhs); | ^~~~~~~~ In file included from /usr/include/pbseq/alignment/datastructures/alignment/AlignmentCandidate.hpp:6, from ../utils/SamToCmpH5.cpp:3: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/11/bits/c++allocator.h:33, from /usr/include/c++/11/bits/allocator.h:46, from /usr/include/c++/11/string:41, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/ios:42, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from ../utils/SamToCmpH5.cpp:1: /usr/include/c++/11/ext/new_allocator.h:162:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here 162 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/pbseq/alignment/datastructures/alignmentset/AlignmentSetToCmpH5Adapter.hpp:79, from ../utils/SamToCmpH5.cpp:5: /usr/include/pbseq/alignment/datastructures/alignmentset/AlignmentSetToCmpH5AdapterImpl.hpp: In instantiation of ‘unsigned int AlignmentSetToCmpH5Adapter::StoreRefGroup(std::string, T_CmpFile&) [with T_CmpFile = HDFCmpFile >; std::string = std::__cxx11::basic_string]’: /usr/include/pbseq/alignment/datastructures/alignmentset/AlignmentSetToCmpH5AdapterImpl.hpp:136:31: required from ‘void AlignmentSetToCmpH5Adapter::StoreAlignmentCandidate(AlignmentCandidate<>&, int, T_CmpFile&, int, bool) [with T_CmpFile = HDFCmpFile >]’ /usr/include/pbseq/alignment/datastructures/alignmentset/AlignmentSetToCmpH5AdapterImpl.hpp:246:32: required from ‘void AlignmentSetToCmpH5Adapter::StoreAlignmentCandidateList(std::vector >&, T_CmpFile&, int, bool) [with T_CmpFile = HDFCmpFile >]’ ../utils/SamToCmpH5.cpp:199:56: required from here /usr/include/pbseq/alignment/datastructures/alignmentset/AlignmentSetToCmpH5AdapterImpl.hpp:64:45: warning: implicitly-declared ‘RefGroupNameId& RefGroupNameId::operator=(const RefGroupNameId&)’ is deprecated [-Wdeprecated-copy] 64 | refNameToRefGroupNameandId[refName] = RefGroupNameId(refGroupName, refGroupId); In file included from ../utils/SamToCmpH5.cpp:5: /usr/include/pbseq/alignment/datastructures/alignmentset/AlignmentSetToCmpH5Adapter.hpp:28:5: note: because ‘RefGroupNameId’ has user-provided ‘RefGroupNameId::RefGroupNameId(const RefGroupNameId&)’ 28 | RefGroupNameId(const RefGroupNameId &rhs) | ^~~~~~~~~~~~~~ [18/25] c++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/blasr-u1h0OJ/blasr-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/utils_SDPMatcher.cpp.o -MF libblasr_impl.a.p/utils_SDPMatcher.cpp.o.d -o libblasr_impl.a.p/utils_SDPMatcher.cpp.o -c ../utils/SDPMatcher.cpp In file included from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../utils/SDPMatcher.cpp:8: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’: /usr/include/c++/11/bits/alloc_traits.h:516:17: required from ‘static void std::allocator_traits >::construct(std::allocator_traits >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits >::allocator_type = std::allocator]’ /usr/include/c++/11/bits/stl_vector.h:1192:30: required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’ /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29: required from here /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy] 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’ 103 | Alignment &operator=(const Alignment &rhs); | ^~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy] 58 | class Alignment : public AlignmentStats | ^~~~~~~~~ In file included from /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:8, from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../utils/SDPMatcher.cpp:8: /usr/include/pbseq/alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’ 19 | AlignmentStats &operator=(const AlignmentStats &rhs); | ^~~~~~~~ In file included from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../utils/SDPMatcher.cpp:8: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/11/bits/c++allocator.h:33, from /usr/include/c++/11/bits/allocator.h:46, from /usr/include/c++/11/string:41, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/ios:42, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from ../utils/SDPMatcher.cpp:3: /usr/include/c++/11/ext/new_allocator.h:162:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here 162 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [19/25] c++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/blasr-u1h0OJ/blasr-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/utils_SamFilter.cpp.o -MF libblasr_impl.a.p/utils_SamFilter.cpp.o.d -o libblasr_impl.a.p/utils_SamFilter.cpp.o -c ../utils/SamFilter.cpp In file included from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../utils/SamFilter.cpp:32: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’: /usr/include/c++/11/bits/alloc_traits.h:516:17: required from ‘static void std::allocator_traits >::construct(std::allocator_traits >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits >::allocator_type = std::allocator]’ /usr/include/c++/11/bits/stl_vector.h:1192:30: required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’ /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29: required from here /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy] 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’ 103 | Alignment &operator=(const Alignment &rhs); | ^~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy] 58 | class Alignment : public AlignmentStats | ^~~~~~~~~ In file included from /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:8, from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../utils/SamFilter.cpp:32: /usr/include/pbseq/alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’ 19 | AlignmentStats &operator=(const AlignmentStats &rhs); | ^~~~~~~~ In file included from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../utils/SamFilter.cpp:32: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/11/bits/c++allocator.h:33, from /usr/include/c++/11/bits/allocator.h:46, from /usr/include/c++/11/string:41, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/ios:42, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from ../utils/SamFilter.cpp:29: /usr/include/c++/11/ext/new_allocator.h:162:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here 162 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [20/25] c++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/blasr-u1h0OJ/blasr-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/utils_LoadPulses.cpp.o -MF libblasr_impl.a.p/utils_LoadPulses.cpp.o.d -o libblasr_impl.a.p/utils_LoadPulses.cpp.o -c ../utils/LoadPulses.cpp In file included from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from /usr/include/pbseq/alignment/datastructures/alignment/ByteAlignment.h:6, from ../utils/LoadPulses.cpp:11: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’: /usr/include/c++/11/bits/alloc_traits.h:516:17: required from ‘static void std::allocator_traits >::construct(std::allocator_traits >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits >::allocator_type = std::allocator]’ /usr/include/c++/11/bits/stl_vector.h:1192:30: required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’ /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29: required from here /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy] 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’ 103 | Alignment &operator=(const Alignment &rhs); | ^~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy] 58 | class Alignment : public AlignmentStats | ^~~~~~~~~ In file included from /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:8, from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from /usr/include/pbseq/alignment/datastructures/alignment/ByteAlignment.h:6, from ../utils/LoadPulses.cpp:11: /usr/include/pbseq/alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’ 19 | AlignmentStats &operator=(const AlignmentStats &rhs); | ^~~~~~~~ In file included from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from /usr/include/pbseq/alignment/datastructures/alignment/ByteAlignment.h:6, from ../utils/LoadPulses.cpp:11: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/11/bits/c++allocator.h:33, from /usr/include/c++/11/bits/allocator.h:46, from /usr/include/c++/11/unordered_map:40, from /usr/include/c++/11/functional:61, from /usr/include/c++/11/pstl/glue_algorithm_defs.h:13, from /usr/include/c++/11/algorithm:74, from ../utils/LoadPulses.cpp:3: /usr/include/c++/11/ext/new_allocator.h:162:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here 162 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [21/25] rm -f libblasr_impl.a && gcc-ar csrDT libblasr_impl.a libblasr_impl.a.p/extrautils_SuffixArrayToBWT.cpp.o libblasr_impl.a.p/extrautils_BwtToSuffixArray.cpp.o libblasr_impl.a.p/extrautils_SWMatcher.cpp.o libblasr_impl.a.p/extrautils_SAModify.cpp.o libblasr_impl.a.p/extrautils_ExciseRepeats.cpp.o libblasr_impl.a.p/extrautils_StoreQualityByContextFromCmpH5.cpp.o libblasr_impl.a.p/extrautils_SALS.cpp.o libblasr_impl.a.p/extrautils_SimpleShredder.cpp.o libblasr_impl.a.p/extrautils_Evolve.cpp.o libblasr_impl.a.p/extrautils_BuildSequenceDB.cpp.o libblasr_impl.a.p/extrautils_PrintTupleCountTable.cpp.o libblasr_impl.a.p/utils_SamToM4.cpp.o libblasr_impl.a.p/utils_SamToCmpH5.cpp.o libblasr_impl.a.p/utils_SDPMatcher.cpp.o libblasr_impl.a.p/utils_LoadPulses.cpp.o libblasr_impl.a.p/utils_PulseToFasta.cpp.o libblasr_impl.a.p/utils_SamFilter.cpp.o [22/25] c++ -o sawriter sawriter.p/utils_SAWriter.cpp.o -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -I/usr/include/pbseq -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -lhdf5_cpp -lhdf5 -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/blasr-u1h0OJ/blasr-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial libblasr_impl.a -pthread -lpbbam /usr/lib/x86_64-linux-gnu/libblasr.so /usr/lib/x86_64-linux-gnu/libpbbam.so /usr/lib/x86_64-linux-gnu/libpbcopper.so -lpbcopper /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhts.so -lpbbam -lpbcopper -Wl,--end-group [23/25] c++ -o toAfg toAfg.p/utils_ToAfg.cpp.o -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -I/usr/include/pbseq -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -lhdf5_cpp -lhdf5 -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/blasr-u1h0OJ/blasr-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial libblasr_impl.a -pthread -lpbbam /usr/lib/x86_64-linux-gnu/libblasr.so /usr/lib/x86_64-linux-gnu/libpbbam.so /usr/lib/x86_64-linux-gnu/libpbcopper.so -lpbcopper /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhts.so -lpbbam -lpbcopper -Wl,--end-group [24/25] c++ -Iblasr.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/blasr-u1h0OJ/blasr-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -DCMAKE_BUILD=1 -MD -MQ blasr.p/Blasr.cpp.o -MF blasr.p/Blasr.cpp.o.d -o blasr.p/Blasr.cpp.o -c ../Blasr.cpp In file included from ../iblasr/BlasrMiscs.hpp:56, from ../iblasr/BlasrAlign.hpp:5, from ../Blasr.cpp:3: ../iblasr/BlasrMiscsImpl.hpp: In function ‘void MakeSubreadIntervals(std::vector&, std::vector&)’: ../iblasr/BlasrMiscsImpl.hpp:136:25: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy] 136 | for (auto subread : subreads) { | ^~~~~~~~ In file included from /usr/include/pbseq/pbdata/CCSSequence.hpp:5, from /usr/include/pbseq/alignment/files/CCSIterator.hpp:4, from ../iblasr/BlasrHeaders.h:57, from ../iblasr/BlasrAlign.hpp:4, from ../Blasr.cpp:3: /usr/include/pbseq/pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’ 171 | SMRTSequence &operator=(const SMRTSequence &rhs); | ^~~~~~~~ In file included from ../iblasr/MappingIPC.h:5, from ../iblasr/BlasrHeaders.h:99, from ../iblasr/BlasrAlign.hpp:4, from ../Blasr.cpp:3: ../iblasr/MappingParameters.h: In copy constructor ‘MappingParameters::MappingParameters(const MappingParameters&)’: ../iblasr/MappingParameters.h:19:7: warning: implicitly-declared ‘constexpr AnchorParameters::AnchorParameters(const AnchorParameters&)’ is deprecated [-Wdeprecated-copy] 19 | class MappingParameters | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/pbseq/alignment/algorithms/anchoring/BWTSearch.hpp:7, from ../iblasr/BlasrHeaders.h:42, from ../iblasr/BlasrAlign.hpp:4, from ../Blasr.cpp:3: /usr/include/pbseq/alignment/datastructures/anchoring/AnchorParameters.hpp:33:23: note: because ‘AnchorParameters’ has user-provided ‘AnchorParameters& AnchorParameters::operator=(const AnchorParameters&)’ 33 | AnchorParameters &operator=(const AnchorParameters &rhs); | ^~~~~~~~ ../Blasr.cpp: In function ‘void MapReadsNonCCS(MappingData >, FASTASequence, DNATuple>*, MappingBuffers&, SMRTSequence&, SMRTSequence&, std::vector&, MappingParameters&, const int&, ReadAlignments&, std::ofstream&)’: ../Blasr.cpp:382:49: note: synthesized method ‘MappingParameters::MappingParameters(const MappingParameters&)’ first required here 382 | MappingParameters sensitiveParams = params; | ^~~~~~ ../Blasr.cpp: In function ‘int main(int, char**)’: ../Blasr.cpp:1407:32: warning: cast between incompatible function types from ‘void (*)(MappingData >, FASTASequence, DNATuple>*)’ to ‘void* (*)(void*)’ [-Wcast-function-type] 1407 | (void *(*)(void *))MapReads, &mapdb[procIndex]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/pbseq/alignment/format/BAMPrinter.hpp:29, from ../iblasr/BlasrHeaders.h:60, from ../iblasr/BlasrAlign.hpp:4, from ../Blasr.cpp:3: /usr/include/pbseq/alignment/format/BAMPrinterImpl.hpp: In instantiation of ‘void AlignmentToBamRecord(T_AlignmentCandidate&, T_Sequence&, T_Sequence&, PacBio::BAM::BamRecord&, AlignmentContext&, SupplementalQVList&, SAMOutput::Clipping, bool, bool) [with T_Sequence = SMRTSequence; T_AlignmentCandidate = AlignmentCandidate]’: /usr/include/pbseq/alignment/format/BAMPrinterImpl.hpp:167:25: required from ‘void BAMOutput::PrintAlignment(T_AlignmentCandidate&, T_Sequence&, T_Sequence&, PacBio::BAM::IRecordWriter&, AlignmentContext&, SupplementalQVList&, SAMOutput::Clipping, bool, bool) [with T_Sequence = SMRTSequence; T_AlignmentCandidate = AlignmentCandidate]’ ../iblasr/BlasrUtilsImpl.hpp:951:38: required from here /usr/include/pbseq/alignment/format/BAMPrinterImpl.hpp:27:45: warning: the compiler can assume that the address of ‘read’ will never be NULL [-Waddress] 27 | if (dynamic_cast(&read) == NULL) { | ^ In file included from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp:11, from /usr/include/pbseq/alignment/algorithms/alignment/AffineGuidedAlign.hpp:4, from ../iblasr/BlasrHeaders.h:30, from ../iblasr/BlasrAlign.hpp:4, from ../Blasr.cpp:3: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’: /usr/include/c++/11/bits/alloc_traits.h:516:17: required from ‘static void std::allocator_traits >::construct(std::allocator_traits >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits >::allocator_type = std::allocator]’ /usr/include/c++/11/bits/stl_vector.h:1192:30: required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’ /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29: required from here /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy] 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’ 103 | Alignment &operator=(const Alignment &rhs); | ^~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy] 58 | class Alignment : public AlignmentStats | ^~~~~~~~~ In file included from /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:8, from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp:11, from /usr/include/pbseq/alignment/algorithms/alignment/AffineGuidedAlign.hpp:4, from ../iblasr/BlasrHeaders.h:30, from ../iblasr/BlasrAlign.hpp:4, from ../Blasr.cpp:3: /usr/include/pbseq/alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’ 19 | AlignmentStats &operator=(const AlignmentStats &rhs); | ^~~~~~~~ In file included from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp:11, from /usr/include/pbseq/alignment/algorithms/alignment/AffineGuidedAlign.hpp:4, from ../iblasr/BlasrHeaders.h:30, from ../iblasr/BlasrAlign.hpp:4, from ../Blasr.cpp:3: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/11/bits/c++allocator.h:33, from /usr/include/c++/11/bits/allocator.h:46, from /usr/include/c++/11/string:41, from /usr/include/c++/11/bits/locale_classes.h:40, from /usr/include/c++/11/bits/ios_base.h:41, from /usr/include/c++/11/ios:42, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from ../iblasr/BlasrHeaders.h:10, from ../iblasr/BlasrAlign.hpp:4, from ../Blasr.cpp:3: /usr/include/c++/11/ext/new_allocator.h:162:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here 162 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/cassert:44, from /usr/include/pbseq/alignment/algorithms/alignment/sdp/SparseDynamicProgrammingImpl.hpp:5, from /usr/include/pbseq/alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp:35, from /usr/include/pbseq/alignment/algorithms/alignment/SDPAlignImpl.hpp:18, from /usr/include/pbseq/alignment/algorithms/alignment/SDPAlign.hpp:44, from /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp:13, from /usr/include/pbseq/alignment/algorithms/alignment/AffineGuidedAlign.hpp:4, from ../iblasr/BlasrHeaders.h:30, from ../iblasr/BlasrAlign.hpp:4, from ../Blasr.cpp:3: /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp: In instantiation of ‘int GuidedAlign(QSequence&, TSequence&, blasr::Alignment&, T_ScoreFn&, int, blasr::Alignment&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, AlignmentType, bool) [with QSequence = SMRTSequence; TSequence = DNASequence; T_ScoreFn = IDSScoreFunction]’: /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp:526:23: required from ‘int GuidedAlign(QSequence&, TSequence&, blasr::Alignment&, T_ScoreFn&, int, T_BufferCache&, blasr::Alignment&, AlignmentType, bool) [with QSequence = SMRTSequence; TSequence = DNASequence; T_ScoreFn = IDSScoreFunction; T_BufferCache = MappingBuffers]’ /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp:512:23: required from ‘int GuidedAlign(QSequence&, TSequence&, T_ScoreFn&, int, int, int, float, T_BufferCache&, blasr::Alignment&, AlignmentType, bool, int) [with QSequence = SMRTSequence; TSequence = DNASequence; T_ScoreFn = IDSScoreFunction; T_BufferCache = MappingBuffers]’ ../iblasr/BlasrAlignImpl.hpp:1449:20: required from here /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp:97:24: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 97 | assert(matrixNElem >= 0); | ~~~~~~~~~~~~^~~~ In file included from /usr/include/c++/11/cassert:44, from /usr/include/pbseq/alignment/statistics/StatUtils.hpp:5, from /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp:12, from /usr/include/pbseq/alignment/algorithms/alignment/AffineKBandAlign.hpp:9, from ../iblasr/BlasrHeaders.h:31, from ../iblasr/BlasrAlign.hpp:4, from ../Blasr.cpp:3: /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp: In instantiation of ‘int KBandAlign(T_QuerySequence&, T_TargetSequence&, int (*)[5], int, int, DNALength, std::vector&, std::vector&, T_Alignment&, AlignmentType, T_ScoreFn&, bool) [with T_QuerySequence = SMRTSequence; T_TargetSequence = DNASequence; T_Alignment = AlignmentCandidate; T_ScoreFn = IDSScoreFunction; DNALength = unsigned int]’: /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp:30:22: required from ‘int KBandAlign(T_QuerySequence&, T_TargetSequence&, int (*)[5], int, int, DNALength, std::vector&, std::vector&, T_Alignment&, T_ScoreFn&, AlignmentType, bool) [with T_QuerySequence = SMRTSequence; T_TargetSequence = DNASequence; T_Alignment = AlignmentCandidate; T_ScoreFn = IDSScoreFunction; DNALength = unsigned int]’ ../iblasr/BlasrUtilsImpl.hpp:639:19: required from ‘void RefineAlignment(std::vector&, T_RefSequence&, T_AlignmentCandidate&, MappingParameters&, MappingBuffers&) [with T_RefSequence = DNASequence; T_Sequence = SMRTSequence; T_AlignmentCandidate = AlignmentCandidate]’ ../iblasr/BlasrAlignImpl.hpp:1555:32: required from here /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp:151:26: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 151 | assert(t - 1 >= 0); | ~~~~~~^~~~ /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp:152:26: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 152 | assert(q - 1 >= 0); | ~~~~~~^~~~ In file included from /usr/include/c++/11/cassert:44, from /usr/include/pbseq/alignment/algorithms/alignment/sdp/SparseDynamicProgrammingImpl.hpp:5, from /usr/include/pbseq/alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp:35, from /usr/include/pbseq/alignment/algorithms/alignment/SDPAlignImpl.hpp:18, from /usr/include/pbseq/alignment/algorithms/alignment/SDPAlign.hpp:44, from /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp:13, from /usr/include/pbseq/alignment/algorithms/alignment/AffineGuidedAlign.hpp:4, from ../iblasr/BlasrHeaders.h:30, from ../iblasr/BlasrAlign.hpp:4, from ../Blasr.cpp:3: /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp: In instantiation of ‘int GuidedAlign(QSequence&, TSequence&, blasr::Alignment&, T_ScoreFn&, int, blasr::Alignment&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, AlignmentType, bool) [with QSequence = FASTQSequence; TSequence = DNASequence; T_ScoreFn = IDSScoreFunction]’: /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp:526:23: required from ‘int GuidedAlign(QSequence&, TSequence&, blasr::Alignment&, T_ScoreFn&, int, T_BufferCache&, blasr::Alignment&, AlignmentType, bool) [with QSequence = FASTQSequence; TSequence = DNASequence; T_ScoreFn = IDSScoreFunction; T_BufferCache = MappingBuffers]’ ../iblasr/BlasrUtilsImpl.hpp:689:32: required from ‘void RefineAlignment(std::vector&, T_RefSequence&, T_AlignmentCandidate&, MappingParameters&, MappingBuffers&) [with T_RefSequence = DNASequence; T_Sequence = SMRTSequence; T_AlignmentCandidate = AlignmentCandidate]’ ../iblasr/BlasrAlignImpl.hpp:1555:32: required from here /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp:97:24: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 97 | assert(matrixNElem >= 0); | ~~~~~~~~~~~~^~~~ /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp: In instantiation of ‘int GuidedAlign(QSequence&, TSequence&, blasr::Alignment&, T_ScoreFn&, int, blasr::Alignment&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, AlignmentType, bool) [with QSequence = FASTQSequence; TSequence = DNASequence; T_ScoreFn = DistanceMatrixScoreFunction]’: /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp:526:23: required from ‘int GuidedAlign(QSequence&, TSequence&, blasr::Alignment&, T_ScoreFn&, int, T_BufferCache&, blasr::Alignment&, AlignmentType, bool) [with QSequence = FASTQSequence; TSequence = DNASequence; T_ScoreFn = DistanceMatrixScoreFunction; T_BufferCache = MappingBuffers]’ ../iblasr/BlasrUtilsImpl.hpp:698:32: required from ‘void RefineAlignment(std::vector&, T_RefSequence&, T_AlignmentCandidate&, MappingParameters&, MappingBuffers&) [with T_RefSequence = DNASequence; T_Sequence = SMRTSequence; T_AlignmentCandidate = AlignmentCandidate]’ ../iblasr/BlasrAlignImpl.hpp:1555:32: required from here /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp:97:24: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] In file included from /usr/include/c++/11/cassert:44, from /usr/include/pbseq/alignment/statistics/StatUtils.hpp:5, from /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp:12, from /usr/include/pbseq/alignment/algorithms/alignment/AffineKBandAlign.hpp:9, from ../iblasr/BlasrHeaders.h:31, from ../iblasr/BlasrAlign.hpp:4, from ../Blasr.cpp:3: /usr/include/pbseq/alignment/algorithms/alignment/OneGapAlignment.hpp: In instantiation of ‘int OneGapAlign(T_QuerySequence&, T_RefSequence&, T_ScoreFunction&, T_BufferList&, blasr::Alignment&) [with T_QuerySequence = FASTQSequence; T_RefSequence = DNASequence; T_ScoreFunction = DistanceMatrixScoreFunction; T_BufferList = MappingBuffers]’: ../iblasr/BlasrAlignImpl.hpp:918:40: required from ‘void AlignIntervals(T_TargetSequence&, T_QuerySequence&, T_QuerySequence&, WeightedIntervalSet&, int (*)[5], int, int, int, int, SequenceIndexDatabase&, std::vector*>&, MappingParameters&, MappingBuffers&, int) [with T_TargetSequence = FASTASequence; T_QuerySequence = SMRTSequence; TDBSequence = FASTQSequence]’ ../iblasr/BlasrAlignImpl.hpp:280:23: required from ‘void MapRead(T_Sequence&, T_Sequence&, T_RefSequence&, T_SuffixArray&, BWT&, SeqBoundaryFtr&, T_TupleCountTable&, SequenceIndexDatabase&, MappingParameters&, MappingMetrics&, std::vector*>&, MappingBuffers&, MappingIPC*, MappingSemaphores&) [with T_Sequence = SMRTSequence; T_RefSequence = FASTASequence; T_SuffixArray = SuffixArray >; T_TupleCountTable = TupleCountTable; BWT = Bwt; MappingIPC = MappingData >, FASTASequence, DNATuple>]’ ../Blasr.cpp:347:16: required from here /usr/include/pbseq/alignment/algorithms/alignment/OneGapAlignment.hpp:337:40: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 337 | assert(distanceBetweenLeftAndRight >= 0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp: In instantiation of ‘int KBandAlign(T_QuerySequence&, T_TargetSequence&, int (*)[5], int, int, DNALength, std::vector&, std::vector&, T_Alignment&, AlignmentType, T_ScoreFn&, bool) [with T_QuerySequence = FASTQSequence; T_TargetSequence = DNASequence; T_Alignment = AlignmentCandidate; T_ScoreFn = IDSScoreFunction; DNALength = unsigned int]’: /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp:30:22: required from ‘int KBandAlign(T_QuerySequence&, T_TargetSequence&, int (*)[5], int, int, DNALength, std::vector&, std::vector&, T_Alignment&, T_ScoreFn&, AlignmentType, bool) [with T_QuerySequence = FASTQSequence; T_TargetSequence = DNASequence; T_Alignment = AlignmentCandidate; T_ScoreFn = IDSScoreFunction; DNALength = unsigned int]’ ../iblasr/BlasrAlignImpl.hpp:1301:38: required from ‘void PairwiseLocalAlign(T_Sequence&, T_RefSequence&, int, MappingParameters&, T_AlignmentCandidate&, MappingBuffers&, AlignmentType) [with T_RefSequence = DNASequence; T_Sequence = FASTQSequence; T_AlignmentCandidate = AlignmentCandidate]’ ../iblasr/BlasrUtilsImpl.hpp:873:27: required from ‘void RefineAlignment(std::vector&, T_RefSequence&, T_AlignmentCandidate&, MappingParameters&, MappingBuffers&) [with T_RefSequence = DNASequence; T_Sequence = SMRTSequence; T_AlignmentCandidate = AlignmentCandidate]’ ../iblasr/BlasrAlignImpl.hpp:1555:32: required from here /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp:151:26: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 151 | assert(t - 1 >= 0); | ~~~~~~^~~~ /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp:152:26: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 152 | assert(q - 1 >= 0); | ~~~~~~^~~~ /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp: In instantiation of ‘int KBandAlign(T_QuerySequence&, T_TargetSequence&, int (*)[5], int, int, DNALength, std::vector&, std::vector&, T_Alignment&, AlignmentType, T_ScoreFn&, bool) [with T_QuerySequence = FASTQSequence; T_TargetSequence = DNASequence; T_Alignment = AlignmentCandidate; T_ScoreFn = QualityValueScoreFunction; DNALength = unsigned int]’: /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp:30:22: required from ‘int KBandAlign(T_QuerySequence&, T_TargetSequence&, int (*)[5], int, int, DNALength, std::vector&, std::vector&, T_Alignment&, T_ScoreFn&, AlignmentType, bool) [with T_QuerySequence = FASTQSequence; T_TargetSequence = DNASequence; T_Alignment = AlignmentCandidate; T_ScoreFn = QualityValueScoreFunction; DNALength = unsigned int]’ ../iblasr/BlasrAlignImpl.hpp:1310:38: required from ‘void PairwiseLocalAlign(T_Sequence&, T_RefSequence&, int, MappingParameters&, T_AlignmentCandidate&, MappingBuffers&, AlignmentType) [with T_RefSequence = DNASequence; T_Sequence = FASTQSequence; T_AlignmentCandidate = AlignmentCandidate]’ ../iblasr/BlasrUtilsImpl.hpp:873:27: required from ‘void RefineAlignment(std::vector&, T_RefSequence&, T_AlignmentCandidate&, MappingParameters&, MappingBuffers&) [with T_RefSequence = DNASequence; T_Sequence = SMRTSequence; T_AlignmentCandidate = AlignmentCandidate]’ ../iblasr/BlasrAlignImpl.hpp:1555:32: required from here /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp:151:26: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 151 | assert(t - 1 >= 0); | ~~~~~~^~~~ /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp:152:26: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 152 | assert(q - 1 >= 0); | ~~~~~~^~~~ In file included from /usr/include/pbseq/alignment/format/BAMPrinter.hpp:29, from ../iblasr/BlasrHeaders.h:60, from ../iblasr/BlasrAlign.hpp:4, from ../Blasr.cpp:3: /usr/include/pbseq/alignment/format/BAMPrinterImpl.hpp: In function ‘void AlignmentToBamRecord(T_AlignmentCandidate&, T_Sequence&, T_Sequence&, PacBio::BAM::BamRecord&, AlignmentContext&, SupplementalQVList&, SAMOutput::Clipping, bool, bool) [with T_Sequence = SMRTSequence]’: /usr/include/pbseq/alignment/format/BAMPrinterImpl.hpp:27:5: warning: ‘nonnull’ argument ‘read’ compared to NULL [-Wnonnull-compare] 27 | if (dynamic_cast(&read) == NULL) { | ^~ [25/25] c++ -o blasr blasr.p/Blasr.cpp.o -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -I/usr/include/pbseq -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -lhdf5_cpp -lhdf5 -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/blasr-u1h0OJ/blasr-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial libblasr_impl.a -pthread -lpbbam /usr/lib/x86_64-linux-gnu/libblasr.so /usr/lib/x86_64-linux-gnu/libpbbam.so /usr/lib/x86_64-linux-gnu/libpbcopper.so -lpbcopper /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhts.so -lpbbam -lpbcopper -Wl,--end-group /usr/bin/ld: warning: libpbcopper.so.1.9.3, needed by /usr/lib/x86_64-linux-gnu/libpbbam.so, may conflict with libpbcopper.so.2.0.0 dh: command-omitted: The call to "dh_auto_test -a -O--buildsystem=meson" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=meson dh_prep -a -O--buildsystem=meson dh_auto_install --destdir=debian/blasr/ -a -O--buildsystem=meson cd obj-x86_64-linux-gnu && DESTDIR=/build/blasr-u1h0OJ/blasr-5.3.5\+dfsg/debian/blasr LC_ALL=C.UTF-8 ninja install [1/4] Generating BlasrGitHash.h with a custom command [1/2] Installing files. Installing blasr to /build/blasr-u1h0OJ/blasr-5.3.5+dfsg/debian/blasr/usr/bin Installing sawriter to /build/blasr-u1h0OJ/blasr-5.3.5+dfsg/debian/blasr/usr/bin dh_install -a -O--buildsystem=meson dh_installdocs -a -O--buildsystem=meson dh_installchangelogs -a -O--buildsystem=meson dh_installexamples -a -O--buildsystem=meson dh_installman -a -O--buildsystem=meson dh_installsystemduser -a -O--buildsystem=meson dh_lintian -a -O--buildsystem=meson dh_perl -a -O--buildsystem=meson dh_link -a -O--buildsystem=meson dh_strip_nondeterminism -a -O--buildsystem=meson dh_compress -a -O--buildsystem=meson dh_fixperms -a -O--buildsystem=meson dh_missing -a -O--buildsystem=meson dh_dwz -a -O--buildsystem=meson dh_strip -a -O--buildsystem=meson dh_makeshlibs -a -O--buildsystem=meson dh_shlibdeps -a -O--buildsystem=meson dh_installdeb -a -O--buildsystem=meson dh_gencontrol -a -O--buildsystem=meson dh_md5sums -a -O--buildsystem=meson dh_builddeb -a -O--buildsystem=meson dpkg-deb: building package 'blasr-dbgsym' in '../blasr-dbgsym_5.3.5+dfsg-3_amd64.deb'. dpkg-deb: building package 'blasr' in '../blasr_5.3.5+dfsg-3_amd64.deb'. dpkg-genbuildinfo --build=any -O../blasr_5.3.5+dfsg-3_amd64.buildinfo dpkg-genchanges --build=any -O../blasr_5.3.5+dfsg-3_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/blasr-u1h0OJ /tmp/blasr-5.3.5+dfsg-3gl_f1m3j I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.n2gkf1JfmQ... I: success in 574.8045 seconds md5: blasr-dbgsym_5.3.5+dfsg-3_amd64.deb: OK md5: blasr_5.3.5+dfsg-3_amd64.deb: OK sha1: blasr-dbgsym_5.3.5+dfsg-3_amd64.deb: OK sha1: blasr_5.3.5+dfsg-3_amd64.deb: OK sha256: blasr-dbgsym_5.3.5+dfsg-3_amd64.deb: OK sha256: blasr_5.3.5+dfsg-3_amd64.deb: OK Checksums: OK