Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/b/berkeley-express/berkeley-express_1.5.3+dfsg-2_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/berkeley-express-1.5.3+dfsg-29uu82yre/berkeley-express_1.5.3+dfsg-2_all.buildinfo Get source package info: berkeley-express=1.5.3+dfsg-2 Source URL: http://snapshot.notset.fr/mr/package/berkeley-express/1.5.3+dfsg-2/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.4-2 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.52 bash=5.1-3+b2 binutils=2.37-7 binutils-common=2.37-7 binutils-x86-64-linux-gnu=2.37-7 bsdextrautils=2.37.2-3 bsdutils=1:2.37.2-3 build-essential=12.9 bzip2=1.0.8-4 cmake=3.21.3-4 cmake-data=3.21.3-4 coreutils=8.32-4+b1 cpp=4:11.2.0-2 cpp-11=11.2.0-8 dash=0.5.11+git20210120+802ebd4-1 debconf=1.5.77 debhelper=13.5.2 debianutils=5.5-1 dh-autoreconf=20 dh-elpa-helper=2.0.9 dh-strip-nondeterminism=1.12.0-1 diffutils=1:3.7-5 dpkg=1.20.9 dpkg-dev=1.20.9 dwz=0.14-1 emacsen-common=3.0.4 file=1:5.39-3 findutils=4.8.0-1 g++=4:11.2.0-2 g++-11=11.2.0-8 gcc=4:11.2.0-2 gcc-10-base=10.3.0-11 gcc-11=11.2.0-8 gcc-11-base=11.2.0-8 gettext=0.21-4 gettext-base=0.21-4 grep=3.7-1 groff-base=1.22.4-7 gzip=1.10-4 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libarchive-zip-perl=1.68-1 libarchive13=3.4.3-2+b1 libasan6=11.2.0-8 libatomic1=11.2.0-8 libattr1=1:2.5.1-1 libaudit-common=1:3.0.6-1 libaudit1=1:3.0.6-1 libbamtools-dev=2.5.1+dfsg-9 libbamtools2.5.1=2.5.1+dfsg-9 libbinutils=2.37-7 libblkid1=2.37.2-3 libboost-atomic1.74-dev=1.74.0-11 libboost-atomic1.74.0=1.74.0-11 libboost-chrono1.74-dev=1.74.0-11 libboost-chrono1.74.0=1.74.0-11 libboost-date-time-dev=1.74.0.3 libboost-date-time1.74-dev=1.74.0-11 libboost-date-time1.74.0=1.74.0-11 libboost-filesystem-dev=1.74.0.3 libboost-filesystem1.74-dev=1.74.0-11 libboost-filesystem1.74.0=1.74.0-11 libboost-program-options-dev=1.74.0.3 libboost-program-options1.74-dev=1.74.0-11 libboost-program-options1.74.0=1.74.0-11 libboost-serialization1.74-dev=1.74.0-11 libboost-serialization1.74.0=1.74.0-11 libboost-system-dev=1.74.0.3 libboost-system1.74-dev=1.74.0-11 libboost-system1.74.0=1.74.0-11 libboost-thread-dev=1.74.0.3 libboost-thread1.74-dev=1.74.0-11 libboost-thread1.74.0=1.74.0-11 libboost-tools-dev=1.74.0.3 libboost1.74-dev=1.74.0-11 libboost1.74-tools-dev=1.74.0-11 libbrotli1=1.0.9-2+b2 libbz2-1.0=1.0.8-4 libc-bin=2.32-4 libc-dev-bin=2.32-4 libc6=2.32-4 libc6-dev=2.32-4 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcc1-0=11.2.0-8 libcom-err2=1.46.4-1 libcrypt-dev=1:4.4.25-2 libcrypt1=1:4.4.25-2 libctf-nobfd0=2.37-7 libctf0=2.37-7 libcurl4=7.74.0-1.3+b1 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.260 libdebhelper-perl=13.5.2 libdpkg-perl=1.20.9 libelf1=0.185-2 libexpat1=2.4.1-2+b1 libffi8=3.4.2-2 libfile-stripnondeterminism-perl=1.12.0-1 libgcc-10-dev=10.3.0-11 libgcc-11-dev=11.2.0-8 libgcc-s1=11.2.0-8 libgcrypt20=1.9.4-3+b1 libgdbm-compat4=1.21-1 libgdbm6=1.21-1 libgmp10=2:6.2.1+dfsg-2 libgnutls30=3.7.2-2 libgomp1=11.2.0-8 libgoogle-perftools-dev=2.9.1-1 libgoogle-perftools4=2.9.1-1 libgpg-error0=1.42-3 libgssapi-krb5-2=1.18.3-7 libhogweed6=3.7.3-1 libicu67=67.1-7 libidn2-0=2.3.2-2 libisl23=0.23-1 libitm1=11.2.0-8 libjsoncpp24=1.9.4-5 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 libldap-2.4-2=2.4.59+dfsg-1 liblsan0=11.2.0-8 liblz4-1=1.9.3-2 liblzma-dev=5.2.5-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmount1=2.37.2-3 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libncurses6=6.2+20210905-1 libncursesw6=6.2+20210905-1 libnettle8=3.7.3-1 libnghttp2-14=1.43.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libp11-kit0=0.24.0-5 libpam-modules=1.4.0-10 libpam-modules-bin=1.4.0-10 libpam-runtime=1.4.0-10 libpam0g=1.4.0-10 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.1-6 libpipeline1=1.5.3-1 libprocps8=2:3.3.17-5 libprotobuf-dev=3.12.4-1 libprotobuf-lite23=3.12.4-1 libprotobuf23=3.12.4-1 libprotoc23=3.12.4-1 libpsl5=0.21.0-1.2 libquadmath0=11.2.0-8 librhash0=1.4.2-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg-2.1 libsasl2-modules-db=2.1.27+dfsg-2.1 libseccomp2=2.5.2-2 libselinux1=3.1-3 libsigsegv2=2.13-1 libsmartcols1=2.37.2-3 libssh2-1=1.10.0-2 libssl1.1=1.1.1l-1 libstdc++-10-dev=10.3.0-11 libstdc++-11-dev=11.2.0-8 libstdc++6=11.2.0-8 libsub-override-perl=0.09-2 libsystemd0=247.9-4 libtasn1-6=4.17.0-2 libtcmalloc-minimal4=2.9.1-1 libtinfo6=6.2+20210905-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtsan0=11.2.0-8 libubsan1=11.2.0-8 libuchardet0=0.0.7-1 libudev1=247.9-4 libunistring2=0.9.10-6 libunwind-dev=1.3.2-2 libunwind8=1.3.2-2 libuuid1=2.37.2-3 libuv1=1.42.0-1 libxml2=2.9.12+dfsg-5 libzstd1=1.4.8+dfsg-3 linux-libc-dev=5.14.9-2 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-2 mawk=1.3.4.20200120-2 ncurses-base=6.2+20210905-1 ncurses-bin=6.2+20210905-1 patch=2.7.6-7 perl=5.32.1-6 perl-base=5.32.1-6 perl-modules-5.32=5.32.1-6 po-debconf=1.0.21+nmu1 procps=2:3.3.17-5 protobuf-compiler=3.12.4-1 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.00-1 tar=1.34+dfsg-1 util-linux=2.37.2-3 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211018T024645Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211018T024645Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211010T204214Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d berkeley-express=1.5.3+dfsg-2 && mkdir -p /build/berkeley-express-fMPr7P && dpkg-source --no-check -x /*.dsc /build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg && chown -R builduser:builduser /build/berkeley-express-fMPr7P" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1634128197" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/berkeley-express-fMPr7P /tmp/berkeley-express-1.5.3+dfsg-29uu82yre bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20211010T204214Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.ijjwYAuN2_ as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.ijjwYAuN2_ Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-3). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20211010T204214Z unstable/main amd64 libfakeroot amd64 1.26-1 [47.3 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211010T204214Z unstable/main amd64 fakeroot amd64 1.26-1 [87.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1015 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4667 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.26-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.26-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.26-1_amd64.deb ... Unpacking fakeroot (1.26-1) ... Setting up libfakeroot:amd64 (1.26-1) ... Setting up fakeroot (1.26-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.32-4) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211018T024645Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211018T024645Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211010T204214Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.ijjwYAuN2_ Get:1 http://snapshot.notset.fr/archive/debian/20211018T024645Z bookworm InRelease [128 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20211010T204214Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20211018T024645Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211018T024645Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211018T024645Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211018T024645Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211018T024645Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211018T024645Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20211018T024645Z bookworm/main Sources [11.7 MB] Get:4 http://snapshot.notset.fr/archive/debian/20211018T024645Z bookworm/main amd64 Packages [11.2 MB] Fetched 23.0 MB in 20s (1175 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.ijjwYAuN2_ I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d berkeley-express=1.5.3+dfsg-2 && mkdir -p /build/berkeley-express-fMPr7P && dpkg-source --no-check -x /*.dsc /build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg && chown -R builduser:builduser /build/berkeley-express-fMPr7P"' exec /tmp/mmdebstrap.ijjwYAuN2_ Reading package lists... NOTICE: 'berkeley-express' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/berkeley-express.git Please use: git clone https://salsa.debian.org/med-team/berkeley-express.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 379 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20211018T024645Z bookworm/main berkeley-express 1.5.3+dfsg-2 (dsc) [2493 B] Get:2 http://snapshot.notset.fr/archive/debian/20211018T024645Z bookworm/main berkeley-express 1.5.3+dfsg-2 (tar) [366 kB] Get:3 http://snapshot.notset.fr/archive/debian/20211018T024645Z bookworm/main berkeley-express 1.5.3+dfsg-2 (diff) [10.5 kB] Fetched 379 kB in 0s (1020 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'berkeley-express_1.5.3+dfsg-2.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting berkeley-express in /build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg dpkg-source: info: unpacking berkeley-express_1.5.3+dfsg.orig.tar.xz dpkg-source: info: unpacking berkeley-express_1.5.3+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling-fixes dpkg-source: info: applying fix-bamtools-path dpkg-source: info: applying drop-zlib dpkg-source: info: applying correct-debug-flags.patch dpkg-source: info: applying privacy-breach.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1634128197" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.ijjwYAuN2_ dpkg-buildpackage: info: source package berkeley-express dpkg-buildpackage: info: source version 1.5.3+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg' dh_clean src/config.h make[1]: Leaving directory '/build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg' debian/rules binary-indep dh binary-indep dh_update_autotools_config -i dh_autoreconf -i dh_auto_configure -i cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 11.2.0 -- The CXX compiler identification is GNU 11.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.39") found components: thread system filesystem program_options date_time -- Found GPERFTOOLS_TCMALLOC: /usr/lib/x86_64-linux-gnu/libtcmalloc.so -- Found Protobuf: /usr/lib/x86_64-linux-gnu/libprotobuf.so;-lpthread (found version "3.12.4") -- Do not try to find libbamtools.a -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu dh_auto_build -i cd obj-x86_64-linux-gnu && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg -B/build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/express.dir/build.make src/CMakeFiles/express.dir/depend make[3]: Entering directory '/build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' [ 5%] Running cpp protocol buffer compiler on /build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/src/targets.proto cd /build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/protoc --cpp_out /build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src -I /build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/src /build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/src/targets.proto [ 11%] Running cpp protocol buffer compiler on /build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/src/alignments.proto cd /build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/protoc --cpp_out /build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src -I /build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/src /build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/src/alignments.proto [libprotobuf WARNING google/protobuf/compiler/parser.cc:648] No syntax specified for the proto file: targets.proto. Please use 'syntax = "proto2";' or 'syntax = "proto3";' to specify a syntax version. (Defaulted to proto2 syntax.) [libprotobuf WARNING google/protobuf/compiler/parser.cc:648] No syntax specified for the proto file: alignments.proto. Please use 'syntax = "proto2";' or 'syntax = "proto3";' to specify a syntax version. (Defaulted to proto2 syntax.) cd /build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg /build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/src /build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu /build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src /build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/express.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/express.dir/build.make src/CMakeFiles/express.dir/build make[3]: Entering directory '/build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' [ 22%] Building CXX object src/CMakeFiles/express.dir/directiondetector.cpp.o [ 27%] Building CXX object 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src/CMakeFiles/express.dir/fragments.cpp.o cd /build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -I/usr/include/bamtools -g -O2 -ffile-prefix-map=/build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -MD -MT src/CMakeFiles/express.dir/biascorrection.cpp.o -MF CMakeFiles/express.dir/biascorrection.cpp.o.d -o CMakeFiles/express.dir/biascorrection.cpp.o -c /build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/src/biascorrection.cpp [ 44%] Building CXX object src/CMakeFiles/express.dir/mismatchmodel.cpp.o cd /build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB 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-DBOOST_ATOMIC_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -I/usr/include/bamtools -g -O2 -ffile-prefix-map=/build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -MD -MT src/CMakeFiles/express.dir/mismatchmodel.cpp.o -MF CMakeFiles/express.dir/mismatchmodel.cpp.o.d -o CMakeFiles/express.dir/mismatchmodel.cpp.o -c /build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/src/mismatchmodel.cpp cd /build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -I/usr/include/bamtools -g -O2 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src/CMakeFiles/express.dir/main.cpp.o cd /build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -I/usr/include/bamtools -g -O2 -ffile-prefix-map=/build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -MD -MT src/CMakeFiles/express.dir/main.cpp.o -MF CMakeFiles/express.dir/main.cpp.o.d -o CMakeFiles/express.dir/main.cpp.o -c /build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/src/main.cpp : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [ 72%] Building CXX object src/CMakeFiles/express.dir/sequence.cpp.o cd /build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB 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CMakeFiles/express.dir/targets.pb.cc.o -c /build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src/targets.pb.cc : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [100%] Linking CXX executable express cd /build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/express.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/express.dir/biascorrection.cpp.o CMakeFiles/express.dir/bundles.cpp.o CMakeFiles/express.dir/directiondetector.cpp.o CMakeFiles/express.dir/fragments.cpp.o CMakeFiles/express.dir/lengthdistribution.cpp.o CMakeFiles/express.dir/main.cpp.o CMakeFiles/express.dir/mapparser.cpp.o CMakeFiles/express.dir/markovmodel.cpp.o CMakeFiles/express.dir/mismatchmodel.cpp.o CMakeFiles/express.dir/robertsfilter.cpp.o CMakeFiles/express.dir/sequence.cpp.o CMakeFiles/express.dir/targets.cpp.o CMakeFiles/express.dir/threadsafety.cpp.o CMakeFiles/express.dir/alignments.pb.cc.o CMakeFiles/express.dir/targets.pb.cc.o -o express /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_date_time.so.1.74.0 -lbamtools -lprotobuf -lpthread -lrt /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.74.0 -lpthread make[3]: Leaving directory '/build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' [100%] Built target express make[2]: Leaving directory '/build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' dh: command-omitted: The call to "dh_auto_test -i" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -i dh_auto_install -i cd obj-x86_64-linux-gnu && make -j10 install DESTDIR=/build/berkeley-express-fMPr7P/berkeley-express-1.5.3\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg -B/build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/debian/tmp/usr/bin/express make[1]: Leaving directory '/build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' dh_install -i dh_installdocs -i dh_installchangelogs -i dh_installexamples -i dh_installman -i dh_perl -i dh_link -i dh_strip_nondeterminism -i debian/rules override_dh_compress make[1]: Entering directory '/build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg' dh_compress --exclude=express-doc.pdf make[1]: Leaving directory '/build/berkeley-express-fMPr7P/berkeley-express-1.5.3+dfsg' dh_fixperms -i dh_missing -i dh_installdeb -i dh_gencontrol -i dh_md5sums -i dh_builddeb -i dpkg-deb: building package 'berkeley-express-doc' in '../berkeley-express-doc_1.5.3+dfsg-2_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../berkeley-express_1.5.3+dfsg-2_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/berkeley-express-fMPr7P /tmp/berkeley-express-1.5.3+dfsg-29uu82yre I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.ijjwYAuN2_... I: success in 506.4747 seconds md5: berkeley-express-doc_1.5.3+dfsg-2_all.deb: OK sha1: berkeley-express-doc_1.5.3+dfsg-2_all.deb: OK sha256: berkeley-express-doc_1.5.3+dfsg-2_all.deb: OK Checksums: OK