Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/b/beast-mcmc/beast-mcmc_1.10.4+dfsg-3_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/beast-mcmc-1.10.4+dfsg-3jla_ziak/beast-mcmc_1.10.4+dfsg-3_all.buildinfo Get source package info: beast-mcmc=1.10.4+dfsg-3 Source URL: http://snapshot.notset.fr/mr/package/beast-mcmc/1.10.4+dfsg-3/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.118 ant=1.10.11-1 ant-optional=1.10.11-1 autoconf=2.71-2 automake=1:1.16.4-2 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.52 bash=5.1-3+b1 beignet-opencl-icd=1.3.2-8 binutils=2.37-7 binutils-common=2.37-7 binutils-x86-64-linux-gnu=2.37-7 bsdextrautils=2.37.2-3 bsdutils=1:2.37.2-3 build-essential=12.9 bzip2=1.0.8-4 ca-certificates=20210119 ca-certificates-java=20190909 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.3.0-11 dash=0.5.11+git20210120+802ebd4-1 dctrl-tools=2.24-3+b1 debconf=1.5.77 debhelper=13.5.2 debianutils=5.5-1 default-jdk=2:1.11-72 default-jdk-headless=2:1.11-72 default-jre=2:1.11-72 default-jre-headless=2:1.11-72 devscripts=2.21.4 dh-autoreconf=20 dh-strip-nondeterminism=1.12.0-1 diffutils=1:3.7-5 dirmngr=2.2.27-2 dpkg=1.20.9 dpkg-dev=1.20.9 dwz=0.14-1 fakeroot=1.26-1 figtree=1.4.4-5 file=1:5.39-3 findutils=4.8.0-1 fontconfig=2.13.1-4.2 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 g++=4:10.2.1-1 g++-10=10.3.0-11 gcc=4:10.2.1-1 gcc-10=10.3.0-11 gcc-10-base=10.3.0-11 gcc-11-base=11.2.0-8 gettext=0.21-4 gettext-base=0.21-4 gnupg=2.2.27-2 gnupg-l10n=2.2.27-2 gnupg-utils=2.2.27-2 gpg=2.2.27-2 gpg-agent=2.2.27-2 gpg-wks-client=2.2.27-2 gpg-wks-server=2.2.27-2 gpgconf=2.2.27-2 gpgsm=2.2.27-2 gpgv=2.2.27-2 grep=3.7-1 groff-base=1.22.4-7 gzip=1.10-4 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 java-common=0.72 java-wrappers=0.3 javahelper=0.78 junit4=4.13.1-2 libacl1=2.3.1-1 libactivation-java=1.2.0-2 libapache-pom-java=18-1 libarchive-zip-perl=1.68-1 libasan6=11.2.0-8 libasound2=1.2.5.1-1 libasound2-data=1.2.5.1-1 libassuan0=2.5.5-1 libatomic1=11.2.0-8 libattr1=1:2.5.1-1 libaudit-common=1:3.0.5-1 libaudit1=1:3.0.5-1 libavahi-client3=0.8-5 libavahi-common-data=0.8-5 libavahi-common3=0.8-5 libb-hooks-op-check-perl=0.22-1+b3 libbatik-java=1.12-4 libbinutils=2.37-7 libblas3=3.10.0-1 libblkid1=2.37.2-3 libbrotli1=1.0.9-2+b2 libbsd0=0.11.3-1 libbz2-1.0=1.0.8-4 libc-bin=2.32-4 libc-dev-bin=2.32-4 libc6=2.32-4 libc6-dev=2.32-4 libcairo2=1.16.0-5 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcc1-0=11.2.0-8 libclass-method-modifiers-perl=2.13-1 libcolt-free-java=1.2.0+dfsg-7 libcom-err2=1.46.4-1 libcommons-cli-java=1.4-2 libcommons-codec-java=1.15-1 libcommons-io-java=2.8.0-1 libcommons-logging-java=1.2-2 libcommons-math-java=2.2-7 libcommons-parent-java=43-1 libconcurrent-java=1.3.4-4.1 libcrypt-dev=1:4.4.25-2 libcrypt1=1:4.4.25-2 libctf-nobfd0=2.37-7 libctf0=2.37-7 libcups2=2.3.3op2-7 libcurl4=7.74.0-1.3+b1 libdatrie1=0.2.13-1 libdb5.3=5.3.28+dfsg1-0.8 libdbus-1-3=1.12.20-2 libdebconfclient0=0.260 libdebhelper-perl=13.5.2 libdeflate0=1.7-2 libdevel-callchecker-perl=0.008-1+b2 libdpkg-perl=1.20.9 libdrm-amdgpu1=2.4.107-8 libdrm-common=2.4.107-8 libdrm-intel1=2.4.107-8 libdrm-nouveau2=2.4.107-8 libdrm-radeon1=2.4.107-8 libdrm2=2.4.107-8 libdynaloader-functions-perl=0.003-1.1 libedit2=3.1-20210910-1 libejml-java=0.38+ds-1 libelf1=0.185-2 libencode-locale-perl=1.05-1.1 libexpat1=2.4.1-2+b1 libf2j-java=0.8.1+dfsg-5 libfakeroot=1.26-1 libffi7=3.3-6 libffi8=3.4.2-2 libfile-dirlist-perl=0.05-2 libfile-homedir-perl=1.006-1 libfile-listing-perl=6.14-1 libfile-stripnondeterminism-perl=1.12.0-1 libfile-touch-perl=0.12-1 libfile-which-perl=1.23-1 libfontconfig1=2.13.1-4.2 libfreetype6=2.10.4+dfsg-1 libfribidi0=1.0.8-2 libgcc-10-dev=10.3.0-11 libgcc-s1=11.2.0-8 libgcrypt20=1.9.4-3+b1 libgdbm-compat4=1.21-1 libgdbm6=1.21-1 libgfortran5=11.2.0-8 libgif7=5.1.9-2 libgl1=1.3.4-2+b1 libgl1-mesa-dri=21.2.2-1 libglapi-mesa=21.2.2-1 libglib2.0-0=2.70.0-1+b1 libglvnd0=1.3.4-2+b1 libglx-mesa0=21.2.2-1 libglx0=1.3.4-2+b1 libgmp10=2:6.2.1+dfsg-2 libgnutls30=3.7.2-2 libgomp1=11.2.0-8 libgpg-error0=1.42-3 libgraphite2-3=1.3.14-1 libgssapi-krb5-2=1.18.3-7 libhamcrest-java=1.3-9 libharfbuzz0b=2.7.4-1 libhmsbeagle-java=3.1.2+dfsg-11 libhmsbeagle1v5=3.1.2+dfsg-11 libhogweed6=3.7.3-1 libhtml-parser-perl=3.76-1 libhtml-tagset-perl=3.20-4 libhtml-tree-perl=5.07-2 libhttp-cookies-perl=6.10-1 libhttp-date-perl=6.05-1 libhttp-message-perl=6.33-1 libhttp-negotiate-perl=6.01-1 libice6=2:1.0.10-1 libicu67=67.1-7 libidn2-0=2.3.2-2 libimport-into-perl=1.002005-1 libio-html-perl=1.004-2 libio-pty-perl=1:1.15-2 libio-socket-ssl-perl=2.072-1 libipc-run-perl=20200505.0-1 libisl23=0.23-1 libitext1-java=1.4-7 libitext5-java=5.5.13.2-1 libitm1=11.2.0-8 libjam-java=0.1.git20180106.740247a+dfsg-1 libjaxen-java=1.1.6-4 libjaxp1.3-java=1.3.05-6 libjbig0=2.1-3.1+b2 libjdom1-java=1.1.3-2.1 libjebl2-java=0.1+git20201011.969bd4b-1 libjlapack-java=0.8~dfsg-5 libjpeg62-turbo=1:2.0.6-4 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 libksba8=1.6.0-2 liblapack3=3.10.0-1 liblcms2-2=2.12~rc1-2 libldap-2.4-2=2.4.59+dfsg-1 libllvm12=1:12.0.1-9 liblog4j1.2-java=1.2.17-10 liblsan0=11.2.0-8 liblwp-mediatypes-perl=6.04-1 liblwp-protocol-https-perl=6.10-1 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmd0=1.0.3-3 libmodule-runtime-perl=0.016-1 libmoo-perl=2.005004-2 libmount1=2.37.2-3 libmpc3=1.2.0-1 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libmpj-java=0.44+dfsg-4 libmtj-java=0.9.14+dfsg-7 libncursesw6=6.2+20210905-1 libnet-http-perl=6.21-1 libnet-ssleay-perl=1.88-3+b1 libnettle8=3.7.3-1 libnghttp2-14=1.43.0-1 libnpth0=1.6-3 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnspr4=2:4.32-1 libnss3=2:3.70-1 liboptions-java=0.0.20120113-3 libp11-kit0=0.24.0-2+b1 libpam-modules=1.4.0-10 libpam-modules-bin=1.4.0-10 libpam-runtime=1.4.0-10 libpam0g=1.4.0-10 libpango-1.0-0=1.48.10+ds1-1 libpangocairo-1.0-0=1.48.10+ds1-1 libpangoft2-1.0-0=1.48.10+ds1-1 libpaper-utils=1.1.28+b1 libpaper1=1.1.28+b1 libparams-classify-perl=0.015-1+b3 libpciaccess0=0.16-1 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libpcsclite1=1.9.3-2 libperl5.32=5.32.1-6 libpipeline1=1.5.3-1 libpixman-1-0=0.40.0-1 libpng16-16=1.6.37-3 libpsl5=0.21.0-1.2 libpython3-stdlib=3.9.2-3 libpython3.9-minimal=3.9.7-4 libpython3.9-stdlib=3.9.7-4 libquadmath0=11.2.0-8 libreadline8=8.1-2 librole-tiny-perl=2.002004-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg-2.1 libsasl2-modules-db=2.1.27+dfsg-2.1 libseccomp2=2.5.2-1 libselinux1=3.1-3 libsemanage-common=3.1-1 libsemanage1=3.1-1+b2 libsensors-config=1:3.6.0-7 libsensors5=1:3.6.0-7 libsepol1=3.1-1 libsigsegv2=2.13-1 libsm6=2:1.2.3-1 libsmartcols1=2.37.2-3 libsqlite3-0=3.36.0-2 libssh2-1=1.10.0-2 libssl1.1=1.1.1l-1 libstdc++-10-dev=10.3.0-11 libstdc++6=11.2.0-8 libsub-override-perl=0.09-2 libsub-quote-perl=2.006006-1 libsystemd0=247.9-3 libtasn1-6=4.17.0-2 libtcl8.6=8.6.11+dfsg-1 libthai-data=0.1.28-4.1 libthai0=0.1.28-4.1 libtiff5=4.3.0-2 libtimedate-perl=2.3300-2 libtinfo6=6.2+20210905-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtk8.6=8.6.11.1-1 libtool=2.4.6-15 libtry-tiny-perl=0.30-1 libtsan0=11.2.0-8 libubsan1=11.2.0-8 libuchardet0=0.0.7-1 libudev1=247.9-3 libunistring2=0.9.10-6 liburi-perl=5.08-1 libuuid1=2.37.2-3 libvulkan1=1.2.189.0-2 libwebp6=0.6.1-2.1 libwww-perl=6.53-1 libwww-robotrules-perl=6.02-1 libx11-6=2:1.7.2-2+b1 libx11-data=2:1.7.2-2 libx11-xcb1=2:1.7.2-2+b1 libxalan2-java=2.7.2-4 libxau6=1:1.0.9-1 libxcb-dri2-0=1.14-3 libxcb-dri3-0=1.14-3 libxcb-glx0=1.14-3 libxcb-present0=1.14-3 libxcb-render0=1.14-3 libxcb-shm0=1.14-3 libxcb-sync1=1.14-3 libxcb-xfixes0=1.14-3 libxcb1=1.14-3 libxdmcp6=1:1.1.2-3 libxerces2-java=2.12.1-1 libxext6=2:1.3.4-1 libxfixes3=1:5.0.3-2 libxft2=2.3.2-2 libxi6=2:1.8-1 libxml-commons-external-java=1.4.01-5 libxml-commons-resolver1.1-java=1.2-11 libxml2=2.9.12+dfsg-5 libxmlgraphics-commons-java=2.4-2 libxrender1=1:0.9.10-1 libxshmfence1=1.3-1 libxss1=1:1.2.3-1 libxt6=1:1.2.0-1 libxtst6=2:1.2.3-1 libxxf86vm1=1:1.1.4-1+b2 libz3-4=4.8.12-1+b1 libzstd1=1.4.8+dfsg-2.1 linux-libc-dev=5.14.6-3 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-2 mawk=1.3.4.20200120-2 media-types=4.0.0 ncurses-base=6.2+20210905-1 ncurses-bin=6.2+20210905-1 netbase=6.3 ocl-icd-libopencl1=2.2.14-3 openjdk-11-jdk=11.0.12+7-2 openjdk-11-jdk-headless=11.0.12+7-2 openjdk-11-jre=11.0.12+7-2 openjdk-11-jre-headless=11.0.12+7-2 openssl=1.1.1l-1 passwd=1:4.8.1-1 patch=2.7.6-7 patchutils=0.4.2-1 perl=5.32.1-6 perl-base=5.32.1-6 perl-modules-5.32=5.32.1-6 perl-openssl-defaults=5 pinentry-curses=1.1.0-4 po-debconf=1.0.21+nmu1 python3=3.9.2-3 python3-minimal=3.9.2-3 python3.9=3.9.7-4 python3.9-minimal=3.9.7-4 r-base-core=4.1.1-2 r-cran-rjava=1.0-5-1 readline-common=8.1-2 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.00-1 tar=1.34+dfsg-1 tzdata=2021b-1 ucf=3.0043 unzip=6.0-26 util-linux=2.37.2-3 wdiff=1.2.2-2+b1 x11-common=1:7.7+23 xdg-utils=1.1.3-4.1 xz-utils=5.2.5-2 zip=3.0-12 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211006T025359Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211006T025359Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211001T101807Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d beast-mcmc=1.10.4+dfsg-3 && mkdir -p /build/beast-mcmc-ti2ijB && dpkg-source --no-check -x /*.dsc /build/beast-mcmc-ti2ijB/beast-mcmc-1.10.4+dfsg && chown -R builduser:builduser /build/beast-mcmc-ti2ijB" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/beast-mcmc-ti2ijB/beast-mcmc-1.10.4+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1633085198" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/beast-mcmc-ti2ijB /tmp/beast-mcmc-1.10.4+dfsg-3jla_ziak bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20211001T101807Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.nT2cVdjnEv as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.nT2cVdjnEv Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-3). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20211001T101807Z unstable/main amd64 libfakeroot amd64 1.26-1 [47.3 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211001T101807Z unstable/main amd64 fakeroot amd64 1.26-1 [87.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1022 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4668 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.26-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.26-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.26-1_amd64.deb ... Unpacking fakeroot (1.26-1) ... Setting up libfakeroot:amd64 (1.26-1) ... Setting up fakeroot (1.26-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.32-4) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211006T025359Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211006T025359Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211001T101807Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.nT2cVdjnEv Get:1 http://snapshot.notset.fr/archive/debian/20211006T025359Z bookworm InRelease [128 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20211001T101807Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20211006T025359Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211006T025359Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211006T025359Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211006T025359Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211006T025359Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211006T025359Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20211006T025359Z bookworm/main Sources [11.7 MB] Get:4 http://snapshot.notset.fr/archive/debian/20211006T025359Z bookworm/main amd64 Packages [11.2 MB] Fetched 23.0 MB in 19s (1180 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.nT2cVdjnEv I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d beast-mcmc=1.10.4+dfsg-3 && mkdir -p /build/beast-mcmc-ti2ijB && dpkg-source --no-check -x /*.dsc /build/beast-mcmc-ti2ijB/beast-mcmc-1.10.4+dfsg && chown -R builduser:builduser /build/beast-mcmc-ti2ijB"' exec /tmp/mmdebstrap.nT2cVdjnEv Reading package lists... NOTICE: 'beast-mcmc' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/beast-mcmc.git Please use: git clone https://salsa.debian.org/med-team/beast-mcmc.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 5050 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20211006T025359Z bookworm/main beast-mcmc 1.10.4+dfsg-3 (dsc) [2472 B] Get:2 http://snapshot.notset.fr/archive/debian/20211006T025359Z bookworm/main beast-mcmc 1.10.4+dfsg-3 (tar) [5022 kB] Get:3 http://snapshot.notset.fr/archive/debian/20211006T025359Z bookworm/main beast-mcmc 1.10.4+dfsg-3 (diff) [25.3 kB] Fetched 5050 kB in 4s (1272 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'beast-mcmc_1.10.4+dfsg-3.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting beast-mcmc in /build/beast-mcmc-ti2ijB/beast-mcmc-1.10.4+dfsg dpkg-source: info: unpacking beast-mcmc_1.10.4+dfsg.orig.tar.xz dpkg-source: info: unpacking beast-mcmc_1.10.4+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying enable_hardening.patch dpkg-source: info: applying fix_classpath_in_build_xml.patch dpkg-source: info: applying create_soname.patch dpkg-source: info: applying fix_encoding.patch dpkg-source: info: applying ignore_mac_install.patch dpkg-source: info: applying update-ejml.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/beast-mcmc-ti2ijB/beast-mcmc-1.10.4+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1633085198" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.nT2cVdjnEv dpkg-buildpackage: info: source package beast-mcmc dpkg-buildpackage: info: source version 1.10.4+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . debian/rules clean dh clean --with javahelper debian/rules override_dh_auto_clean make[1]: Entering directory '/build/beast-mcmc-ti2ijB/beast-mcmc-1.10.4+dfsg' rm -f native/*\.o native/*\.so native/*\.so\.* ant clean Buildfile: /build/beast-mcmc-ti2ijB/beast-mcmc-1.10.4+dfsg/build.xml clean: BUILD SUCCESSFUL Total time: 0 seconds make[1]: Leaving directory '/build/beast-mcmc-ti2ijB/beast-mcmc-1.10.4+dfsg' jh_clean dh_clean debian/rules binary-indep dh binary-indep --with javahelper dh_update_autotools_config -i dh_autoreconf -i dh_auto_configure -i jh_linkjars -i debian/rules override_dh_auto_build make[1]: Entering directory '/build/beast-mcmc-ti2ijB/beast-mcmc-1.10.4+dfsg' # CLASSPATH=/usr/share/ant/lib/ant.jar:/usr/share/ant/lib/ant-launcher.jar:/usr/share/ant/lib/ant-nodeps.jar:/usr/share/ant/lib/ant-junit.jar:/usr/lib/jvm/default-java/lib/tools.jar:/usr/share/java/beagle.jar:/usr/share/java/mpj.jar:/usr/share/java/org.boehn.kmlframework.jar:/usr/share/java/itext1-1.4.jar:/usr/share/java/junit4.jar:/usr/share/java/figtree.jar:lib/colt.jar:/usr/share/java/options.jar:/usr/share/java/mtj.jar:/usr/share/java/jam.jar:/usr/share/java/jdom1.jar:/usr/share/java/jebl.jar:/usr/share/java/commons-math.jar:/usr/share/java/EJML.jar:/usr/share/java/jlapack-lapack.jar:/usr/lib/R/site-library/rJava/jri/JRI.jar mkdir -p lib ant build Buildfile: /build/beast-mcmc-ti2ijB/beast-mcmc-1.10.4+dfsg/build.xml init: [echo] BEAST: /build/beast-mcmc-ti2ijB/beast-mcmc-1.10.4+dfsg/build.xml compile-all: [mkdir] Created dir: /build/beast-mcmc-ti2ijB/beast-mcmc-1.10.4+dfsg/build [javac] /build/beast-mcmc-ti2ijB/beast-mcmc-1.10.4+dfsg/build.xml:102: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds [javac] Compiling 2503 source files to /build/beast-mcmc-ti2ijB/beast-mcmc-1.10.4+dfsg/build [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] Note: Some input files use or override a deprecated API. [javac] Note: Recompile with -Xlint:deprecation for details. [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 4 warnings [javac] Creating empty /build/beast-mcmc-ti2ijB/beast-mcmc-1.10.4+dfsg/build/dr/evomodel/alloppnet/package-info.class [echo] Successfully compiled. dist: [mkdir] Created dir: /build/beast-mcmc-ti2ijB/beast-mcmc-1.10.4+dfsg/build/dist [jar] Building jar: /build/beast-mcmc-ti2ijB/beast-mcmc-1.10.4+dfsg/build/dist/beast.jar [jar] Building jar: /build/beast-mcmc-ti2ijB/beast-mcmc-1.10.4+dfsg/build/dist/beauti.jar [jar] Building jar: /build/beast-mcmc-ti2ijB/beast-mcmc-1.10.4+dfsg/build/dist/trace.jar linux: [mkdir] Created dir: /build/beast-mcmc-ti2ijB/beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4 [copy] Copying 6 files to /build/beast-mcmc-ti2ijB/beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/bin [copy] Copying 1 file to /build/beast-mcmc-ti2ijB/beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/doc [copy] Copying 158 files to /build/beast-mcmc-ti2ijB/beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/examples [copy] Copying 18 files to /build/beast-mcmc-ti2ijB/beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/native [copy] Copying 1 file to /build/beast-mcmc-ti2ijB/beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/images [copy] Copying 1 file to /build/beast-mcmc-ti2ijB/beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/images [copy] Copying 1 file to /build/beast-mcmc-ti2ijB/beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/images [copy] Copying 1 file to /build/beast-mcmc-ti2ijB/beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/lib [copy] Copying 1 file to /build/beast-mcmc-ti2ijB/beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/lib [copy] Copying 1 file to /build/beast-mcmc-ti2ijB/beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4 [copy] Copying 1 file to /build/beast-mcmc-ti2ijB/beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4 [echo] Have to tar manaully, because [ANT Bug 550] the tar task change the mode of the executables files. [echo] Linux/Unix version release is finished. build: BUILD SUCCESSFUL Total time: 20 seconds # FIXME: There is no such file build_tracer.xml any more # ant -buildfile build_tracer.xml dist # native/compileNativeLinux.sh does not create dynamic libraries cd native ; /usr/bin/make -f Makefile.linux JAVA_HOME=/usr/lib/jvm/default-java make[2]: Entering directory '/build/beast-mcmc-ti2ijB/beast-mcmc-1.10.4+dfsg/native' gcc -O2 -funroll-loops -I/usr/lib/jvm/default-java/include/ -I/usr/lib/jvm/default-java/include/linux -c NucleotideLikelihoodCore.c gcc -O2 -funroll-loops -I/usr/lib/jvm/default-java/include/ -I/usr/lib/jvm/default-java/include/linux -shared -Wl,-soname,libNucleotideLikelihoodCore.so.0 -o libNucleotideLikelihoodCore.so.0 NucleotideLikelihoodCore.o make[2]: Leaving directory '/build/beast-mcmc-ti2ijB/beast-mcmc-1.10.4+dfsg/native' make[1]: Leaving directory '/build/beast-mcmc-ti2ijB/beast-mcmc-1.10.4+dfsg' create-stamp debian/debhelper-build-stamp dh_prep -i dh_auto_install -i dh_install -i jh_installjavadoc -i dh_installdocs -i dh_installchangelogs -i dh_installman -i dh_installmenu -i dh_perl -i dh_link -i jh_installlibs -i jh_classpath -i jh_manifest -i jh_exec -i jh_depends -i dh_strip_nondeterminism -i dh_compress -i dh_fixperms -i dh_missing -i dh_installdeb -i dh_gencontrol -i dpkg-gencontrol: warning: Depends field of package beast-mcmc-examples: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package beast-mcmc: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -i dh_builddeb -i dpkg-deb: building package 'beast-mcmc' in '../beast-mcmc_1.10.4+dfsg-3_all.deb'. dpkg-deb: building package 'beast-mcmc-examples' in '../beast-mcmc-examples_1.10.4+dfsg-3_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../beast-mcmc_1.10.4+dfsg-3_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/beast-mcmc-ti2ijB /tmp/beast-mcmc-1.10.4+dfsg-3jla_ziak I: cleaning package lists and apt cache... W: deleting files in /tmp: hsperfdata_root W: deleting files in /tmp: hsperfdata_builduser I: removing tempdir /tmp/mmdebstrap.nT2cVdjnEv... I: success in 791.5940 seconds md5: beast-mcmc-examples_1.10.4+dfsg-3_all.deb: OK md5: beast-mcmc_1.10.4+dfsg-3_all.deb: OK sha1: beast-mcmc-examples_1.10.4+dfsg-3_all.deb: OK sha1: beast-mcmc_1.10.4+dfsg-3_all.deb: OK sha256: beast-mcmc-examples_1.10.4+dfsg-3_all.deb: OK sha256: beast-mcmc_1.10.4+dfsg-3_all.deb: OK Checksums: OK