Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/b/beast-mcmc/beast-mcmc_1.10.4+dfsg-2_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/beast-mcmc-1.10.4+dfsg-2_gls99w4/beast-mcmc_1.10.4+dfsg-2_amd64.buildinfo Get source package info: beast-mcmc=1.10.4+dfsg-2 Source URL: http://snapshot.notset.fr/mr/package/beast-mcmc/1.10.4+dfsg-2/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.118 ant=1.10.7-1 ant-optional=1.10.7-1 autoconf=2.69-11 automake=1:1.16.1-4 autopoint=0.19.8.1-9 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.46 bash=5.0-5 beignet-opencl-icd=1.3.2-6+b10 binutils=2.33.1-2 binutils-common=2.33.1-2 binutils-x86-64-linux-gnu=2.33.1-2 bsdmainutils=11.1.2+b1 bsdutils=1:2.34-0.1 build-essential=12.8 bzip2=1.0.8-2 ca-certificates=20190110 ca-certificates-java=20190909 coreutils=8.30-3+b1 cpp=4:9.2.1-3.1 cpp-9=9.2.1-19 dash=0.5.10.2-6 dctrl-tools=2.24-3+b1 debconf=1.5.73 debhelper=12.7.1 debianutils=4.9 default-jdk=2:1.11-72 default-jdk-headless=2:1.11-72 default-jre=2:1.11-72 default-jre-headless=2:1.11-72 devscripts=2.19.7 dh-autoreconf=19 dh-strip-nondeterminism=1.6.2-1 diffutils=1:3.7-3 dirmngr=2.2.17-3 dpkg=1.19.7 dpkg-dev=1.19.7 dwz=0.13-2 fakeroot=1.24-1 fdisk=2.34-0.1 figtree=1.4.4-3 file=1:5.37-6 findutils=4.7.0-1 fontconfig=2.13.1-2+b1 fontconfig-config=2.13.1-2 fonts-dejavu-core=2.37-1 g++=4:9.2.1-3.1 g++-9=9.2.1-19 gcc=4:9.2.1-3.1 gcc-9=9.2.1-19 gcc-9-base=9.2.1-19 gettext=0.19.8.1-9 gettext-base=0.19.8.1-9 gnupg=2.2.17-3 gnupg-l10n=2.2.17-3 gnupg-utils=2.2.17-3 gpg=2.2.17-3 gpg-agent=2.2.17-3 gpg-wks-client=2.2.17-3 gpg-wks-server=2.2.17-3 gpgconf=2.2.17-3 gpgsm=2.2.17-3 gpgv=2.2.17-3 grep=3.3-1 groff-base=1.22.4-3 gzip=1.9-3+b1 hostname=3.23 init-system-helpers=1.57 intltool-debian=0.35.0+20060710.5 java-common=0.72 java-wrappers=0.3 javahelper=0.72.10 junit=3.8.2-9 junit4=4.12-8 libacl1=2.2.53-5 libactivation-java=1.2.0-2 libapache-pom-java=18-1 libarchive-zip-perl=1.67-1 libasan5=9.2.1-19 libasound2=1.1.9-1 libasound2-data=1.1.9-1 libassuan0=2.5.3-7 libatomic1=9.2.1-19 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-2 libaudit1=1:2.8.5-2 libavahi-client3=0.7-4+b1 libavahi-common-data=0.7-4+b1 libavahi-common3=0.7-4+b1 libb-hooks-op-check-perl=0.22-1+b2 libbatik-java=1.10-2 libbinutils=2.33.1-2 libblas3=3.8.0-8 libblkid1=2.34-0.1 libbrotli1=1.0.7-5 libbsd0=0.10.0-1 libbz2-1.0=1.0.8-2 libc-bin=2.29-3 libc-dev-bin=2.29-3 libc6=2.29-3 libc6-dev=2.29-3 libcairo2=1.16.0-4 libcap-ng0=0.7.9-2.1 libcc1-0=9.2.1-19 libclass-method-modifiers-perl=2.13-1 libcolt-free-java=1.2.0+dfsg-7 libcom-err2=1.45.4-1 libcommons-cli-java=1.4-1 libcommons-codec-java=1.11-1 libcommons-io-java=2.6-2 libcommons-logging-java=1.2-2 libcommons-math-java=2.2-7 libcommons-parent-java=43-1 libconcurrent-java=1.3.4-4 libcroco3=0.6.13-1 libcups2=2.3.0-7 libcurl4=7.66.0-1+b1 libdatrie1=0.2.12-3 libdb5.3=5.3.28+dfsg1-0.6 libdbus-1-3=1.12.16-2 libdebconfclient0=0.250 libdebhelper-perl=12.7.1 libdevel-callchecker-perl=0.008-1+b1 libdpkg-perl=1.19.7 libdrm-amdgpu1=2.4.100-3 libdrm-common=2.4.100-3 libdrm-intel1=2.4.100-3 libdrm-nouveau2=2.4.100-3 libdrm-radeon1=2.4.100-3 libdrm2=2.4.100-3 libdynaloader-functions-perl=0.003-1 libedit2=3.1-20191025-1 libegl-mesa0=19.2.3-1 libegl1=1.1.0-1+b1 libejml-java=0.38+ds-1 libelf1=0.176-1.1 libencode-locale-perl=1.05-1 libexpat1=2.2.9-1 libf2j-java=0.8.1+dfsg-4 libfakeroot=1.24-1 libfdisk1=2.34-0.1 libffi6=3.2.1-9 libfile-homedir-perl=1.004-1 libfile-listing-perl=6.04-1 libfile-stripnondeterminism-perl=1.6.2-1 libfile-which-perl=1.23-1 libfontconfig1=2.13.1-2+b1 libfreehep-export-java=2.1.1-4 libfreehep-graphics2d-java=2.1.1-6 libfreehep-graphicsio-emf-java=2.1.1-emfplus+dfsg1-4 libfreehep-graphicsio-java=2.1.1-5 libfreehep-graphicsio-pdf-java=2.1.1+dfsg-3 libfreehep-graphicsio-ps-java=2.1.1-3 libfreehep-graphicsio-svg-java=2.1.1-5 libfreehep-graphicsio-swf-java=2.1.1+dfsg-3 libfreehep-graphicsio-tests-java=2.1.1+dfsg1-5 libfreehep-io-java=2.0.2-6 libfreehep-swing-java=2.0.3-5 libfreehep-util-java=2.0.2-7 libfreehep-xml-java=2.1.2+dfsg1-5 libfreetype6=2.10.1-2 libfribidi0=1.0.7-1.1 libgbm1=19.2.3-1 libgcc-9-dev=9.2.1-19 libgcc1=1:9.2.1-19 libgcrypt20=1.8.5-3 libgdbm-compat4=1.18.1-5 libgdbm6=1.18.1-5 libgfortran5=9.2.1-19 libgif7=5.1.4-3 libgl1=1.1.0-1+b1 libgl1-mesa-dri=19.2.3-1 libglapi-mesa=19.2.3-1 libglib2.0-0=2.62.2-3 libglvnd0=1.1.0-1+b1 libglx-mesa0=19.2.3-1 libglx0=1.1.0-1+b1 libgmp10=2:6.1.2+dfsg-4 libgnutls30=3.6.10-4 libgomp1=9.2.1-19 libgpg-error0=1.36-7 libgraphite2-3=1.3.13-11 libgssapi-krb5-2=1.17-6 libhamcrest-java=1.3-9 libharfbuzz0b=2.6.4-1 libhmsbeagle-java=3.1.2+dfsg-6 libhmsbeagle1v5=3.1.2+dfsg-6 libhogweed5=3.5.1+really3.5.1-2 libhtml-parser-perl=3.72-3+b4 libhtml-tagset-perl=3.20-3 libhtml-tree-perl=5.07-2 libhttp-cookies-perl=6.04-2 libhttp-date-perl=6.02-1 libhttp-message-perl=6.18-1 libhttp-negotiate-perl=6.01-1 libice6=2:1.0.9-2 libicu63=63.2-2 libidn2-0=2.2.0-2 libimport-into-perl=1.002005-1 libio-html-perl=1.001-1 libio-pty-perl=1:1.08-1.1+b6 libio-socket-ssl-perl=2.066-1 libipc-run-perl=20180523.0-2 libisl21=0.21-2 libitext1-java=1.4-7 libitext5-java=5.5.13.1-1 libitm1=9.2.1-19 libjam-java=0.1.git20180106.740247a+dfsg-1 libjas-plotter-java=2.2.6+dfsg1-4 libjaxen-java=1.1.6-4 libjaxp1.3-java=1.3.05-5 libjbig0=2.1-3.1+b2 libjdom1-java=1.1.3-2 libjebl2-java=0.1+git20180418.653eb83-1 libjlapack-java=0.8~dfsg-5 libjpeg62-turbo=1:1.5.2-2+b1 libk5crypto3=1.17-6 libkeyutils1=1.6-6 libkrb5-3=1.17-6 libkrb5support0=1.17-6 libksba8=1.3.5-2 liblapack3=3.8.0-8 liblcms2-2=2.9-4 libldap-2.4-2=2.4.48+dfsg-1+b2 libldap-common=2.4.48+dfsg-1 libllvm9=1:9.0.0-3+b1 liblog4j1.2-java=1.2.17-8 liblsan0=9.2.1-19 liblwp-mediatypes-perl=6.04-1 liblwp-protocol-https-perl=6.07-2 liblz4-1=1.9.2-1 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.37-6 libmagic1=1:5.37-6 libmodule-runtime-perl=0.016-1 libmoo-perl=2.003006-1 libmount1=2.34-0.1 libmpc3=1.1.0-1 libmpdec2=2.4.2-2 libmpfr6=4.0.2-1 libmpj-java=0.44+dfsg-4 libmtj-java=0.9.14+dfsg-6 libnb-org-openide-util-java=10.0-2 libnb-org-openide-util-lookup-java=10.0-2 libncurses6=6.1+20191019-1 libncursesw6=6.1+20191019-1 libnet-http-perl=6.19-1 libnet-ssleay-perl=1.88-1+b1 libnettle7=3.5.1+really3.5.1-2 libnghttp2-14=1.39.2-1 libnpth0=1.6-1 libnspr4=2:4.23-1 libnss3=2:3.47-1 liboptions-java=0.0.20120113-3 libp11-kit0=0.23.18.1-2 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpango-1.0-0=1.42.4-7 libpangocairo-1.0-0=1.42.4-7 libpangoft2-1.0-0=1.42.4-7 libpaper-utils=1.1.28+b1 libpaper1=1.1.28+b1 libparams-classify-perl=0.015-1+b2 libpciaccess0=0.14-1 libpcre2-8-0=10.32-5+b1 libpcre3=2:8.39-12+b1 libpcsclite1=1.8.25-2 libperl5.30=5.30.0-9 libpipeline1=1.5.1-2 libpixman-1-0=0.36.0-1 libpng16-16=1.6.37-1 libpsl5=0.20.2-2 libpython3-stdlib=3.7.5-1 libpython3.7-minimal=3.7.5-2 libpython3.7-stdlib=3.7.5-2 libquadmath0=9.2.1-19 libreadline8=8.0-3 librole-tiny-perl=2.001004-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2=2.1.27+dfsg-1 libsasl2-modules-db=2.1.27+dfsg-1 libseccomp2=2.4.1-2 libselinux1=2.9-2+b2 libsemanage-common=2.9-3 libsemanage1=2.9-3 libsensors-config=1:3.6.0-2 libsensors5=1:3.6.0-2 libsepol1=2.9-2+b2 libsigsegv2=2.12-2 libsm6=2:1.2.3-1 libsmartcols1=2.34-0.1 libsqlite3-0=3.30.1-1 libssh2-1=1.8.0-2.1 libssl1.1=1.1.1d-2 libstdc++-9-dev=9.2.1-19 libstdc++6=9.2.1-19 libstrictures-perl=2.000006-1 libsub-override-perl=0.09-2 libsub-quote-perl=2.006006-1 libsystemd0=242-8 libtablelayout-java=20090826-4 libtasn1-6=4.14-3 libtcl8.6=8.6.9+dfsg-2+b1 libthai-data=0.1.28-3 libthai0=0.1.28-3 libtiff5=4.1.0-1 libtimedate-perl=2.3000-2 libtinfo6=6.1+20191019-1 libtk8.6=8.6.9-2+b1 libtool=2.4.6-11 libtry-tiny-perl=0.30-1 libtsan0=9.2.1-19 libubsan1=9.2.1-19 libuchardet0=0.0.6-3 libudev1=242-8 libunistring2=0.9.10-2 liburi-perl=1.76-1 libuuid1=2.34-0.1 libwayland-client0=1.17.0-1 libwayland-server0=1.17.0-1 libwebp6=0.6.1-2+b1 libwww-perl=6.41-1 libwww-robotrules-perl=6.02-1 libx11-6=2:1.6.8-1 libx11-data=2:1.6.8-1 libx11-xcb1=2:1.6.8-1 libxalan2-java=2.7.2-2 libxau6=1:1.0.8-1+b2 libxcb-dri2-0=1.13.1-2 libxcb-dri3-0=1.13.1-2 libxcb-glx0=1.13.1-2 libxcb-present0=1.13.1-2 libxcb-render0=1.13.1-2 libxcb-shm0=1.13.1-2 libxcb-sync1=1.13.1-2 libxcb-xfixes0=1.13.1-2 libxcb1=1.13.1-2 libxdamage1=1:1.1.5-1 libxdmcp6=1:1.1.2-3 libxerces2-java=2.12.0-1 libxext6=2:1.3.3-1+b2 libxfixes3=1:5.0.3-1 libxft2=2.3.2-2 libxi6=2:1.7.9-1 libxml-commons-external-java=1.4.01-3 libxml-commons-resolver1.1-java=1.2-9 libxml2=2.9.4+dfsg1-7+b3 libxmlgraphics-commons-java=2.3-1 libxrender1=1:0.9.10-1 libxshmfence1=1.3-1 libxss1=1:1.2.3-1 libxt6=1:1.1.5-1+b3 libxtst6=2:1.2.3-1 libxxf86vm1=1:1.1.4-1+b2 libz3-4=4.8.6-2+b1 libzstd1=1.4.3+dfsg-1 linux-libc-dev=5.3.9-1 login=1:4.7-2 lsb-base=11.1.0 m4=1.4.18-4 make=4.2.1-1.2 man-db=2.9.0-1 mawk=1.3.3-17+b3 mime-support=3.64 ncurses-base=6.1+20191019-1 ncurses-bin=6.1+20191019-1 netbase=5.6 ocl-icd-libopencl1=2.2.12-2 openjdk-11-jdk=11.0.5+10-2 openjdk-11-jdk-headless=11.0.5+10-2 openjdk-11-jre=11.0.5+10-2 openjdk-11-jre-headless=11.0.5+10-2 openssl=1.1.1d-2 passwd=1:4.7-2 patch=2.7.6-6 patchutils=0.3.4-2+b1 perl=5.30.0-9 perl-base=5.30.0-9 perl-modules-5.30=5.30.0-9 perl-openssl-defaults=3 pinentry-curses=1.1.0-3 po-debconf=1.0.21 python3=3.7.5-1 python3-minimal=3.7.5-1 python3.7=3.7.5-2 python3.7-minimal=3.7.5-2 r-base-core=3.6.1-7 r-cran-rjava=0.9-11-2 readline-common=8.0-3 sed=4.7-1 sensible-utils=0.0.12 sysvinit-utils=2.96-1 tar=1.30+dfsg-6+b1 tzdata=2019c-3 ucf=3.0038+nmu1 unzip=6.0-25 util-linux=2.34-0.1 wdiff=1.2.2-2+b1 x11-common=1:7.7+20 xdg-utils=1.1.3-1 xz-utils=5.2.4-1+b1 zip=3.0-11+b1 zlib1g=1:1.2.11.dfsg-1+b1 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211009T024746Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20191111T033803Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d beast-mcmc=1.10.4+dfsg-2 && mkdir -p /build/beast-mcmc-5Tfid8 && dpkg-source --no-check -x /*.dsc /build/beast-mcmc-5Tfid8/beast-mcmc-1.10.4+dfsg && chown -R builduser:builduser /build/beast-mcmc-5Tfid8" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/beast-mcmc-5Tfid8/beast-mcmc-1.10.4+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1573625969" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/beast-mcmc-5Tfid8 /tmp/beast-mcmc-1.10.4+dfsg-2_gls99w4 bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20191111T033803Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.XpScOiZsUn as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.XpScOiZsUn Reading package lists... Building dependency tree... util-linux is already the newest version (2.34-0.1). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 132 kB of archives. After this operation, 393 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20191111T033803Z unstable/main amd64 libfakeroot amd64 1.24-1 [45.7 kB] Get:2 http://snapshot.notset.fr/archive/debian/20191111T033803Z unstable/main amd64 fakeroot amd64 1.24-1 [85.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 132 kB in 0s (520 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4505 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.24-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.24-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.24-1_amd64.deb ... Unpacking fakeroot (1.24-1) ... Setting up libfakeroot:amd64 (1.24-1) ... Setting up fakeroot (1.24-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.29-3) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211009T024746Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20191111T033803Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.XpScOiZsUn Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211009T024746Z unstable InRelease [165 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20191111T033803Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20211009T024746Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20211009T024746Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20211009T024746Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20211009T024746Z unstable/main amd64 Packages [11.9 MB] Fetched 34.6 MB in 29s (1179 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.XpScOiZsUn I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d beast-mcmc=1.10.4+dfsg-2 && mkdir -p /build/beast-mcmc-5Tfid8 && dpkg-source --no-check -x /*.dsc /build/beast-mcmc-5Tfid8/beast-mcmc-1.10.4+dfsg && chown -R builduser:builduser /build/beast-mcmc-5Tfid8"' exec /tmp/mmdebstrap.XpScOiZsUn Reading package lists... NOTICE: 'beast-mcmc' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/beast-mcmc.git Please use: git clone https://salsa.debian.org/med-team/beast-mcmc.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 5050 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main beast-mcmc 1.10.4+dfsg-2 (dsc) [2497 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main beast-mcmc 1.10.4+dfsg-2 (tar) [5022 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main beast-mcmc 1.10.4+dfsg-2 (diff) [25.0 kB] Fetched 5050 kB in 4s (1256 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'beast-mcmc_1.10.4+dfsg-2.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting beast-mcmc in /build/beast-mcmc-5Tfid8/beast-mcmc-1.10.4+dfsg dpkg-source: info: unpacking beast-mcmc_1.10.4+dfsg.orig.tar.xz dpkg-source: info: unpacking beast-mcmc_1.10.4+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying enable_hardening.patch dpkg-source: info: applying fix_classpath_in_build_xml.patch dpkg-source: info: applying create_soname.patch dpkg-source: info: applying fix_encoding.patch dpkg-source: info: applying ignore_mac_install.patch dpkg-source: info: applying update-ejml.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/beast-mcmc-5Tfid8/beast-mcmc-1.10.4+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1573625969" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.XpScOiZsUn dpkg-buildpackage: info: source package beast-mcmc dpkg-buildpackage: info: source version 1.10.4+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with javahelper debian/rules override_dh_auto_clean make[1]: Entering directory '/build/beast-mcmc-5Tfid8/beast-mcmc-1.10.4+dfsg' rm -f native/*\.o native/*\.so native/*\.so\.* ant clean Buildfile: /build/beast-mcmc-5Tfid8/beast-mcmc-1.10.4+dfsg/build.xml clean: BUILD SUCCESSFUL Total time: 2 seconds make[1]: Leaving directory '/build/beast-mcmc-5Tfid8/beast-mcmc-1.10.4+dfsg' jh_clean dh_clean debian/rules build-arch dh build-arch --with javahelper dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a jh_linkjars -a debian/rules override_dh_auto_build make[1]: Entering directory '/build/beast-mcmc-5Tfid8/beast-mcmc-1.10.4+dfsg' # CLASSPATH=/usr/share/ant/lib/ant.jar:/usr/share/ant/lib/ant-launcher.jar:/usr/share/ant/lib/ant-nodeps.jar:/usr/share/ant/lib/ant-junit.jar:/usr/lib/jvm/default-java/lib/tools.jar:/usr/share/java/beagle.jar:/usr/share/java/mpj.jar:/usr/share/java/org.boehn.kmlframework.jar:/usr/share/java/itext1-1.4.jar:/usr/share/java/junit4.jar:/usr/share/java/figtree.jar:lib/colt.jar:/usr/share/java/options.jar:/usr/share/java/mtj.jar:/usr/share/java/jam.jar:/usr/share/java/jdom1.jar:/usr/share/java/jebl.jar:/usr/share/java/commons-math.jar:/usr/share/java/EJML.jar:/usr/share/java/jlapack-lapack.jar:/usr/lib/R/site-library/rJava/jri/JRI.jar mkdir -p lib ant build Buildfile: /build/beast-mcmc-5Tfid8/beast-mcmc-1.10.4+dfsg/build.xml init: [echo] BEAST: /build/beast-mcmc-5Tfid8/beast-mcmc-1.10.4+dfsg/build.xml compile-all: [mkdir] Created dir: /build/beast-mcmc-5Tfid8/beast-mcmc-1.10.4+dfsg/build [javac] /build/beast-mcmc-5Tfid8/beast-mcmc-1.10.4+dfsg/build.xml:102: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds [javac] Compiling 2503 source files to /build/beast-mcmc-5Tfid8/beast-mcmc-1.10.4+dfsg/build [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] warning: Implicitly compiled files were not subject to annotation processing. [javac] Use -proc:none to disable annotation processing or -implicit to specify a policy for implicit compilation. [javac] Note: Some input files use or override a deprecated API. [javac] Note: Recompile with -Xlint:deprecation for details. [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 5 warnings [javac] Creating empty /build/beast-mcmc-5Tfid8/beast-mcmc-1.10.4+dfsg/build/dr/evomodel/alloppnet/package-info.class [echo] Successfully compiled. dist: [mkdir] Created dir: /build/beast-mcmc-5Tfid8/beast-mcmc-1.10.4+dfsg/build/dist [jar] Building jar: /build/beast-mcmc-5Tfid8/beast-mcmc-1.10.4+dfsg/build/dist/beast.jar [jar] Building jar: /build/beast-mcmc-5Tfid8/beast-mcmc-1.10.4+dfsg/build/dist/beauti.jar [jar] Building jar: /build/beast-mcmc-5Tfid8/beast-mcmc-1.10.4+dfsg/build/dist/trace.jar linux: [mkdir] Created dir: /build/beast-mcmc-5Tfid8/beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4 [copy] Copying 6 files to /build/beast-mcmc-5Tfid8/beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/bin [copy] Copying 1 file to /build/beast-mcmc-5Tfid8/beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/doc [copy] Copying 158 files to /build/beast-mcmc-5Tfid8/beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/examples [copy] Copying 18 files to /build/beast-mcmc-5Tfid8/beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/native [copy] Copying 1 file to /build/beast-mcmc-5Tfid8/beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/images [copy] Copying 1 file to /build/beast-mcmc-5Tfid8/beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/images [copy] Copying 1 file to /build/beast-mcmc-5Tfid8/beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/images [copy] Copying 1 file to /build/beast-mcmc-5Tfid8/beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/lib [copy] Copying 1 file to /build/beast-mcmc-5Tfid8/beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/lib [copy] Copying 1 file to /build/beast-mcmc-5Tfid8/beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4 [copy] Copying 1 file to /build/beast-mcmc-5Tfid8/beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4 [echo] Have to tar manaully, because [ANT Bug 550] the tar task change the mode of the executables files. [echo] Linux/Unix version release is finished. build: BUILD SUCCESSFUL Total time: 4 minutes 31 seconds # FIXME: There is no such file build_tracer.xml any more # ant -buildfile build_tracer.xml dist # native/compileNativeLinux.sh does not create dynamic libraries cd native ; /usr/bin/make -f Makefile.linux JAVA_HOME=/usr/lib/jvm/default-java make[2]: Entering directory '/build/beast-mcmc-5Tfid8/beast-mcmc-1.10.4+dfsg/native' gcc -O2 -funroll-loops -I/usr/lib/jvm/default-java/include/ -I/usr/lib/jvm/default-java/include/linux -c NucleotideLikelihoodCore.c gcc -O2 -funroll-loops -I/usr/lib/jvm/default-java/include/ -I/usr/lib/jvm/default-java/include/linux -shared -Wl,-soname,libNucleotideLikelihoodCore.so.0 -o libNucleotideLikelihoodCore.so.0 NucleotideLikelihoodCore.o make[2]: Leaving directory '/build/beast-mcmc-5Tfid8/beast-mcmc-1.10.4+dfsg/native' make[1]: Leaving directory '/build/beast-mcmc-5Tfid8/beast-mcmc-1.10.4+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/beast-mcmc-5Tfid8/beast-mcmc-1.10.4+dfsg' ##################################################################### ## Run test suite ## ## -------------- ## ## While this test suite runs quite a bit of time (about 30min) it ## ## is recommended to be run at least once per new version upload ## ##################################################################### # # /usr/lib/jvm/default-java/bin/java -classpath /usr/share/ant/lib/ant.jar:/usr/share/ant/lib/ant-launcher.jar:/usr/share/ant/lib/ant-nodeps.jar:/usr/share/ant/lib/ant-junit.jar:/usr/lib/jvm/default-java/lib/tools.jar:/usr/share/java/beagle.jar:/usr/share/java/mpj.jar:/usr/share/java/org.boehn.kmlframework.jar:/usr/share/java/itext1-1.4.jar:/usr/share/java/junit4.jar:/usr/share/java/figtree.jar:lib/colt.jar:/usr/share/java/options.jar:/usr/share/java/mtj.jar:/usr/share/java/jam.jar:/usr/share/java/jdom1.jar:/usr/share/java/jebl.jar:/usr/share/java/commons-math.jar:/usr/share/java/EJML.jar:/usr/share/java/jlapack-lapack.jar:/usr/lib/R/site-library/rJava/jri/JRI.jar -Dant.home=/usr/share/ant org.apache.tools.ant.Main -Dcompile.debug=true -Dcompile.optimize=true -buildfile build.xml junit make[1]: Leaving directory '/build/beast-mcmc-5Tfid8/beast-mcmc-1.10.4+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --with javahelper dh_testroot -a dh_prep -a dh_auto_install -a dh_install -a jh_installjavadoc -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a jh_installlibs -a jh_classpath -a jh_manifest -a jh_depends -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package libnucleotidelikelihoodcore0: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package libnucleotidelikelihoodcore0: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'libnucleotidelikelihoodcore0' in '../libnucleotidelikelihoodcore0_1.10.4+dfsg-2_amd64.deb'. dpkg-deb: building package 'libnucleotidelikelihoodcore0-dbgsym' in '../libnucleotidelikelihoodcore0-dbgsym_1.10.4+dfsg-2_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../beast-mcmc_1.10.4+dfsg-2_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/beast-mcmc-5Tfid8 /tmp/beast-mcmc-1.10.4+dfsg-2_gls99w4 I: cleaning package lists and apt cache... W: deleting files in /tmp: hsperfdata_builduser W: deleting files in /tmp: hsperfdata_root I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.XpScOiZsUn... I: success in 1054.5652 seconds md5: libnucleotidelikelihoodcore0-dbgsym_1.10.4+dfsg-2_amd64.deb: OK md5: libnucleotidelikelihoodcore0_1.10.4+dfsg-2_amd64.deb: OK sha1: libnucleotidelikelihoodcore0-dbgsym_1.10.4+dfsg-2_amd64.deb: OK sha1: libnucleotidelikelihoodcore0_1.10.4+dfsg-2_amd64.deb: OK sha256: libnucleotidelikelihoodcore0-dbgsym_1.10.4+dfsg-2_amd64.deb: OK sha256: libnucleotidelikelihoodcore0_1.10.4+dfsg-2_amd64.deb: OK Checksums: OK