Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/b/bamtools/bamtools_2.5.1+dfsg-10+b1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/bamtools-2.5.1+dfsg-10+b17nqpcb7j/bamtools_2.5.1+dfsg-10+b1_amd64.buildinfo Get source package info: bamtools=2.5.1+dfsg-10 Source URL: http://snapshot.notset.fr/mr/package/bamtools/2.5.1+dfsg-10/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.118 apt=2.3.13 autoconf=2.71-2 automake=1:1.16.5-1.1 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.52 bash=5.1-5 binutils=2.37-10 binutils-common=2.37-10 binutils-x86-64-linux-gnu=2.37-10 bsdextrautils=2.37.2-4 bsdutils=1:2.37.2-4 build-essential=12.9 bzip2=1.0.8-5 cmake=3.22.1-1 cmake-data=3.22.1-1 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-12 d-shlibs=0.104 dash=0.5.11+git20210903+057cd650a4ed-3 debconf=1.5.79 debhelper=13.5.2 debian-archive-keyring=2021.1.1 debianutils=5.5-1 dh-autoreconf=20 dh-elpa-helper=2.0.9 dh-strip-nondeterminism=1.12.1-1 diffutils=1:3.7-5 doxygen=1.9.1-2 dpkg=1.21.1 dpkg-dev=1.21.1 dwz=0.14-1 emacsen-common=3.0.4 file=1:5.41-2 findutils=4.8.0-1 g++=4:11.2.0-2 g++-11=11.2.0-12 gcc=4:11.2.0-2 gcc-11=11.2.0-12 gcc-11-base=11.2.0-12 gettext=0.21-4 gettext-base=0.21-4 gpgv=2.2.27-2 grep=3.7-1 groff-base=1.22.4-7 gzip=1.10-4 help2man=1.48.5 hostname=3.23 init-system-helpers=1.61 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libapt-pkg6.0=2.3.13 libarchive-zip-perl=1.68-1 libarchive13=3.4.3-2+b1 libasan6=11.2.0-12 libatomic1=11.2.0-12 libattr1=1:2.5.1-1 libaudit-common=1:3.0.6-1 libaudit1=1:3.0.6-1+b1 libbinutils=2.37-10 libblkid1=2.37.2-4 libbrotli1=1.0.9-2+b3 libbsd0=0.11.3-1 libbz2-1.0=1.0.8-5 libc-bin=2.32-5 libc-dev-bin=2.32-5 libc6=2.32-5 libc6-dev=2.32-5 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcc1-0=11.2.0-12 libclang-cpp11=1:11.1.0-4+b2 libclang1-11=1:11.1.0-4+b2 libcom-err2=1.46.4-1 libcrypt-dev=1:4.4.26-1 libcrypt1=1:4.4.26-1 libctf-nobfd0=2.37-10 libctf0=2.37-10 libcurl4=7.79.1-2 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.261 libdebhelper-perl=13.5.2 libdpkg-perl=1.21.1 libedit2=3.1-20210910-1 libelf1=0.186-1 libexpat1=2.4.1-3 libffi8=3.4.2-3 libfile-stripnondeterminism-perl=1.12.1-1 libgcc-11-dev=11.2.0-12 libgcc-s1=11.2.0-12 libgcrypt20=1.9.4-4 libgdbm-compat4=1.22-1 libgdbm6=1.22-1 libgmp10=2:6.2.1+dfsg-3 libgnutls30=3.7.2-2 libgomp1=11.2.0-12 libgpg-error0=1.42-3 libgssapi-krb5-2=1.18.3-7 libhogweed6=3.7.3-1 libicu67=67.1-7 libidn2-0=2.3.2-2 libisl23=0.24-2 libitm1=11.2.0-12 libjsoncpp-dev=1.9.5-2 libjsoncpp24=1.9.4-5 libjsoncpp25=1.9.5-2 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 libldap-2.4-2=2.4.59+dfsg-1 libllvm11=1:11.1.0-4+b2 liblocale-gettext-perl=1.07-4+b1 liblsan0=11.2.0-12 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.41-2 libmagic1=1:5.41-2 libmd0=1.0.4-1 libmount1=2.37.2-4 libmpc3=1.2.1-1 libmpfr6=4.1.0-3 libncurses6=6.3-1 libncursesw6=6.3-1 libnettle8=3.7.3-1 libnghttp2-14=1.43.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libp11-kit0=0.24.0-6 libpam-modules=1.4.0-11 libpam-modules-bin=1.4.0-11 libpam-runtime=1.4.0-11 libpam0g=1.4.0-11 libpcre2-8-0=10.39-3 libpcre3=2:8.39-13 libperl5.32=5.32.1-6 libpipeline1=1.5.4-1 libprocps8=2:3.3.17-5 libpsl5=0.21.0-1.2 libquadmath0=11.2.0-12 librhash0=1.4.2-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg2-2 libsasl2-modules-db=2.1.27+dfsg2-2 libseccomp2=2.5.3-2 libselinux1=3.3-1+b1 libsemanage-common=3.3-1 libsemanage2=3.3-1+b1 libsepol2=3.3-1 libsigsegv2=2.13-1 libsmartcols1=2.37.2-4 libssh2-1=1.10.0-2 libssl1.1=1.1.1l-1 libstdc++-11-dev=11.2.0-12 libstdc++6=11.2.0-12 libsub-override-perl=0.09-2 libsystemd0=249.7-1 libtasn1-6=4.18.0-4 libtinfo6=6.3-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtsan0=11.2.0-12 libubsan1=11.2.0-12 libuchardet0=0.0.7-1 libudev1=249.7-1 libunistring2=0.9.10-6 libuuid1=2.37.2-4 libuv1=1.42.0-1 libxapian30=1.4.18-4 libxml2=2.9.12+dfsg-5+b1 libxxhash0=0.8.0-2 libz3-4=4.8.12-1+b1 libzstd1=1.4.8+dfsg-3 linux-libc-dev=5.15.5-1 login=1:4.8.1-2 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-2 mawk=1.3.4.20200120-2 ncurses-base=6.3-1 ncurses-bin=6.3-1 passwd=1:4.8.1-2 patch=2.7.6-7 perl=5.32.1-6 perl-base=5.32.1-6 perl-modules-5.32=5.32.1-6 po-debconf=1.0.21+nmu1 procps=2:3.3.17-5 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.00-1 tar=1.34+dfsg-1 util-linux=2.37.2-4 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211109T030457Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211109T030457Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211228T091540Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20211211T152306Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d bamtools=2.5.1+dfsg-10 && mkdir -p /build/bamtools-IV7gCF && dpkg-source --no-check -x /*.dsc /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg && cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg && { printf '%s' 'bamtools (2.5.1+dfsg-10+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild against libjsoncpp25 -- amd64 / i386 Build Daemon (x86-ubc-01) Sat, 11 Dec 2021 17:41:57 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/bamtools-IV7gCF" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1639244517" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/bamtools-IV7gCF /tmp/bamtools-2.5.1+dfsg-10+b17nqpcb7j bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20211211T152306Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.mhpal_9obh as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.mhpal_9obh Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-4). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20211211T152306Z unstable/main amd64 libfakeroot amd64 1.26-1 [47.3 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211211T152306Z unstable/main amd64 fakeroot amd64 1.26-1 [87.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1034 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4679 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.26-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.26-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.26-1_amd64.deb ... Unpacking fakeroot (1.26-1) ... Setting up libfakeroot:amd64 (1.26-1) ... Setting up fakeroot (1.26-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.32-5) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211109T030457Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211109T030457Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211228T091540Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20211211T152306Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.mhpal_9obh Get:1 http://snapshot.notset.fr/archive/debian/20211109T030457Z bookworm InRelease [128 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211228T091540Z unstable InRelease [165 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20211211T152306Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20211109T030457Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20211109T030457Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20211109T030457Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20211109T030457Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20211109T030457Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20211109T030457Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20211109T030457Z bookworm/main Sources [11.7 MB] Get:5 http://snapshot.notset.fr/archive/debian/20211109T030457Z bookworm/main amd64 Packages [11.2 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20211228T091540Z unstable/main amd64 Packages Err:6 http://snapshot.notset.fr/archive/debian/20211228T091540Z unstable/main amd64 Packages 404 Not Found [IP: 10.13.0.253 80] Ign:6 http://snapshot.notset.fr/archive/debian/20211228T091540Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20211228T091540Z unstable/main amd64 Packages [12.0 MB] Fetched 35.2 MB in 29s (1209 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.mhpal_9obh I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d bamtools=2.5.1+dfsg-10 && mkdir -p /build/bamtools-IV7gCF && dpkg-source --no-check -x /*.dsc /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg && cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg && { printf '%s' 'bamtools (2.5.1+dfsg-10+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild against libjsoncpp25 -- amd64 / i386 Build Daemon (x86-ubc-01) Sat, 11 Dec 2021 17:41:57 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/bamtools-IV7gCF"' exec /tmp/mmdebstrap.mhpal_9obh Reading package lists... NOTICE: 'bamtools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/bamtools.git Please use: git clone https://salsa.debian.org/med-team/bamtools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 211 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20211109T030457Z bookworm/main bamtools 2.5.1+dfsg-10 (dsc) [2396 B] Get:2 http://snapshot.notset.fr/archive/debian/20211109T030457Z bookworm/main bamtools 2.5.1+dfsg-10 (tar) [197 kB] Get:3 http://snapshot.notset.fr/archive/debian/20211109T030457Z bookworm/main bamtools 2.5.1+dfsg-10 (diff) [12.4 kB] Fetched 211 kB in 0s (776 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'bamtools_2.5.1+dfsg-10.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting bamtools in /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg dpkg-source: info: unpacking bamtools_2.5.1+dfsg.orig.tar.gz dpkg-source: info: unpacking bamtools_2.5.1+dfsg-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying doxygen-tweak dpkg-source: info: applying 0001-ignore-thirdparty-and-fix-jsoncpp.patch dpkg-source: info: applying 0003-remove-custom-ExportHeader-function-use-install-inst.patch dpkg-source: info: applying 0006-Doxygen-reproducibility dpkg-source: info: applying 0008_Cmake_Test.patch dpkg-source: info: applying spelling dpkg-source: info: applying tiddit.patch dpkg-source: info: applying shared_and_static.patch dpkg-source: info: applying gcc11.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1639244517" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.mhpal_9obh dpkg-buildpackage: info: source package bamtools dpkg-buildpackage: info: source version 2.5.1+dfsg-10+b1 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by amd64 / i386 Build Daemon (x86-ubc-01) dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. -- The CXX compiler identification is GNU 11.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:22 (cmake_policy): The OLD behavior for policy CMP0042 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) -- Checking for one of the modules 'jsoncpp>=1' Did NOT find system JsonCpp, instead using bundled version -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu dh_auto_build -a cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg -B/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/depend make -f src/api/CMakeFiles/BamTools_static.dir/build.make src/api/CMakeFiles/BamTools_static.dir/depend make[3]: Entering directory '/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api 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src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/build make[3]: Entering directory '/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 1%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/BamAlignment.cpp.o [ 2%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/BamMultiReader.cpp.o [ 3%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/BamReader.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/api/CMakeFiles/BamTools_static.dir/BamAlignment.cpp.o -MF 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src/api/CMakeFiles/BamTools_static.dir/SamHeader.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/api/CMakeFiles/BamTools_static.dir/SamHeader.cpp.o -MF CMakeFiles/BamTools_static.dir/SamHeader.cpp.o.d -o CMakeFiles/BamTools_static.dir/SamHeader.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/SamHeader.cpp [ 7%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamMultiReader.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/BamMultiReader.cpp.o -MF CMakeFiles/BamTools.dir/BamMultiReader.cpp.o.d -o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/BamMultiReader.cpp [ 8%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/SamProgram.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/api/CMakeFiles/BamTools_static.dir/SamProgram.cpp.o -MF 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Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/bam/BamMultiReader_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/api/CMakeFiles/BamTools_static.dir/internal/bam/BamMultiReader_p.cpp.o -MF CMakeFiles/BamTools_static.dir/internal/bam/BamMultiReader_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/internal/bam/BamMultiReader_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/bam/BamMultiReader_p.cpp [ 19%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/bam/BamRandomAccessController_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/api/CMakeFiles/BamTools_static.dir/internal/bam/BamRandomAccessController_p.cpp.o -MF CMakeFiles/BamTools_static.dir/internal/bam/BamRandomAccessController_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/internal/bam/BamRandomAccessController_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/bam/BamRandomAccessController_p.cpp [ 20%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/bam/BamReader_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/api/CMakeFiles/BamTools_static.dir/internal/bam/BamReader_p.cpp.o -MF CMakeFiles/BamTools_static.dir/internal/bam/BamReader_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/internal/bam/BamReader_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/bam/BamReader_p.cpp [ 21%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgram.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/SamProgram.cpp.o -MF CMakeFiles/BamTools.dir/SamProgram.cpp.o.d -o CMakeFiles/BamTools.dir/SamProgram.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/SamProgram.cpp [ 22%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/bam/BamWriter_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/api/CMakeFiles/BamTools_static.dir/internal/bam/BamWriter_p.cpp.o -MF CMakeFiles/BamTools_static.dir/internal/bam/BamWriter_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/internal/bam/BamWriter_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/bam/BamWriter_p.cpp [ 23%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgramChain.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/SamProgramChain.cpp.o -MF CMakeFiles/BamTools.dir/SamProgramChain.cpp.o.d -o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/SamProgramChain.cpp [ 24%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/index/BamIndexFactory_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/api/CMakeFiles/BamTools_static.dir/internal/index/BamIndexFactory_p.cpp.o -MF CMakeFiles/BamTools_static.dir/internal/index/BamIndexFactory_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/internal/index/BamIndexFactory_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/index/BamIndexFactory_p.cpp [ 25%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroup.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/SamReadGroup.cpp.o -MF CMakeFiles/BamTools.dir/SamReadGroup.cpp.o.d -o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/SamReadGroup.cpp [ 26%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/index/BamStandardIndex_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/api/CMakeFiles/BamTools_static.dir/internal/index/BamStandardIndex_p.cpp.o -MF CMakeFiles/BamTools_static.dir/internal/index/BamStandardIndex_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/internal/index/BamStandardIndex_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp [ 27%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/index/BamToolsIndex_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/api/CMakeFiles/BamTools_static.dir/internal/index/BamToolsIndex_p.cpp.o -MF CMakeFiles/BamTools_static.dir/internal/index/BamToolsIndex_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/internal/index/BamToolsIndex_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/index/BamToolsIndex_p.cpp [ 28%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/BamDeviceFactory_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/api/CMakeFiles/BamTools_static.dir/internal/io/BamDeviceFactory_p.cpp.o -MF CMakeFiles/BamTools_static.dir/internal/io/BamDeviceFactory_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/internal/io/BamDeviceFactory_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/io/BamDeviceFactory_p.cpp [ 29%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o -MF CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o.d -o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/SamReadGroupDictionary.cpp [ 30%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/BamFile_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/api/CMakeFiles/BamTools_static.dir/internal/io/BamFile_p.cpp.o -MF CMakeFiles/BamTools_static.dir/internal/io/BamFile_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/internal/io/BamFile_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/io/BamFile_p.cpp [ 31%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamSequence.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/SamSequence.cpp.o -MF CMakeFiles/BamTools.dir/SamSequence.cpp.o.d -o CMakeFiles/BamTools.dir/SamSequence.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/SamSequence.cpp [ 32%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/BamFtp_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/api/CMakeFiles/BamTools_static.dir/internal/io/BamFtp_p.cpp.o -MF CMakeFiles/BamTools_static.dir/internal/io/BamFtp_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/internal/io/BamFtp_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/io/BamFtp_p.cpp [ 33%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/BamHttp_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/api/CMakeFiles/BamTools_static.dir/internal/io/BamHttp_p.cpp.o -MF CMakeFiles/BamTools_static.dir/internal/io/BamHttp_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/internal/io/BamHttp_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/io/BamHttp_p.cpp [ 34%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o -MF CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o.d -o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/SamSequenceDictionary.cpp [ 35%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/BamPipe_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/api/CMakeFiles/BamTools_static.dir/internal/io/BamPipe_p.cpp.o -MF CMakeFiles/BamTools_static.dir/internal/io/BamPipe_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/internal/io/BamPipe_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/io/BamPipe_p.cpp [ 36%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/BgzfStream_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/api/CMakeFiles/BamTools_static.dir/internal/io/BgzfStream_p.cpp.o -MF CMakeFiles/BamTools_static.dir/internal/io/BgzfStream_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/internal/io/BgzfStream_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/io/BgzfStream_p.cpp [ 37%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/ByteArray_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/api/CMakeFiles/BamTools_static.dir/internal/io/ByteArray_p.cpp.o -MF CMakeFiles/BamTools_static.dir/internal/io/ByteArray_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/internal/io/ByteArray_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/io/ByteArray_p.cpp [ 38%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/HostAddress_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/api/CMakeFiles/BamTools_static.dir/internal/io/HostAddress_p.cpp.o -MF CMakeFiles/BamTools_static.dir/internal/io/HostAddress_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/internal/io/HostAddress_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp: In member function ‘void BamTools::Internal::HostAddress::Clear()’: /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp:273:11: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘struct BamTools::Internal::IPv6Address’; use assignment or value-initialization instead [-Wclass-memaccess] 273 | memset(&m_ip6Address, 0, sizeof(IPv6Address)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp:10: /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.h:31:8: note: ‘struct BamTools::Internal::IPv6Address’ declared here 31 | struct IPv6Address | ^~~~~~~~~~~ [ 39%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/bam/BamHeader_p.cpp [ 40%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/HostInfo_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/api/CMakeFiles/BamTools_static.dir/internal/io/HostInfo_p.cpp.o -MF CMakeFiles/BamTools_static.dir/internal/io/HostInfo_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/internal/io/HostInfo_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/io/HostInfo_p.cpp [ 41%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/HttpHeader_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/api/CMakeFiles/BamTools_static.dir/internal/io/HttpHeader_p.cpp.o -MF CMakeFiles/BamTools_static.dir/internal/io/HttpHeader_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/internal/io/HttpHeader_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/io/HttpHeader_p.cpp [ 42%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/ILocalIODevice_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/api/CMakeFiles/BamTools_static.dir/internal/io/ILocalIODevice_p.cpp.o -MF CMakeFiles/BamTools_static.dir/internal/io/ILocalIODevice_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/internal/io/ILocalIODevice_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/io/ILocalIODevice_p.cpp [ 43%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/RollingBuffer_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/api/CMakeFiles/BamTools_static.dir/internal/io/RollingBuffer_p.cpp.o -MF CMakeFiles/BamTools_static.dir/internal/io/RollingBuffer_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/internal/io/RollingBuffer_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/io/RollingBuffer_p.cpp [ 44%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/bam/BamMultiReader_p.cpp [ 45%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/TcpSocket_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/api/CMakeFiles/BamTools_static.dir/internal/io/TcpSocket_p.cpp.o -MF CMakeFiles/BamTools_static.dir/internal/io/TcpSocket_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/internal/io/TcpSocket_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/io/TcpSocket_p.cpp [ 46%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/TcpSocketEngine_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/api/CMakeFiles/BamTools_static.dir/internal/io/TcpSocketEngine_p.cpp.o -MF CMakeFiles/BamTools_static.dir/internal/io/TcpSocketEngine_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/internal/io/TcpSocketEngine_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/io/TcpSocketEngine_p.cpp [ 47%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/TcpSocketEngine_unix_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/api/CMakeFiles/BamTools_static.dir/internal/io/TcpSocketEngine_unix_p.cpp.o -MF CMakeFiles/BamTools_static.dir/internal/io/TcpSocketEngine_unix_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/internal/io/TcpSocketEngine_unix_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/io/TcpSocketEngine_unix_p.cpp [ 48%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/sam/SamFormatParser_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/api/CMakeFiles/BamTools_static.dir/internal/sam/SamFormatParser_p.cpp.o -MF CMakeFiles/BamTools_static.dir/internal/sam/SamFormatParser_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/internal/sam/SamFormatParser_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/sam/SamFormatParser_p.cpp [ 50%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/sam/SamFormatPrinter_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/api/CMakeFiles/BamTools_static.dir/internal/sam/SamFormatPrinter_p.cpp.o -MF CMakeFiles/BamTools_static.dir/internal/sam/SamFormatPrinter_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/internal/sam/SamFormatPrinter_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/sam/SamFormatPrinter_p.cpp [ 51%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/sam/SamHeaderValidator_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/api/CMakeFiles/BamTools_static.dir/internal/sam/SamHeaderValidator_p.cpp.o -MF CMakeFiles/BamTools_static.dir/internal/sam/SamHeaderValidator_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/internal/sam/SamHeaderValidator_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/sam/SamHeaderValidator_p.cpp [ 52%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/utils/BamException_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/api/CMakeFiles/BamTools_static.dir/internal/utils/BamException_p.cpp.o -MF CMakeFiles/BamTools_static.dir/internal/utils/BamException_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/internal/utils/BamException_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/utils/BamException_p.cpp [ 53%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/bam/BamRandomAccessController_p.cpp [ 54%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/bam/BamReader_p.cpp [ 55%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/bam/BamWriter_p.cpp [ 56%] Linking CXX static library libbamtools.a cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/cmake -P CMakeFiles/BamTools_static.dir/cmake_clean_target.cmake cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools_static.dir/link.txt --verbose=1 /usr/bin/ar qc libbamtools.a CMakeFiles/BamTools_static.dir/BamAlignment.cpp.o CMakeFiles/BamTools_static.dir/BamMultiReader.cpp.o CMakeFiles/BamTools_static.dir/BamReader.cpp.o CMakeFiles/BamTools_static.dir/BamWriter.cpp.o CMakeFiles/BamTools_static.dir/SamHeader.cpp.o CMakeFiles/BamTools_static.dir/SamProgram.cpp.o CMakeFiles/BamTools_static.dir/SamProgramChain.cpp.o CMakeFiles/BamTools_static.dir/SamReadGroup.cpp.o CMakeFiles/BamTools_static.dir/SamReadGroupDictionary.cpp.o CMakeFiles/BamTools_static.dir/SamSequence.cpp.o CMakeFiles/BamTools_static.dir/SamSequenceDictionary.cpp.o CMakeFiles/BamTools_static.dir/internal/bam/BamHeader_p.cpp.o CMakeFiles/BamTools_static.dir/internal/bam/BamMultiReader_p.cpp.o CMakeFiles/BamTools_static.dir/internal/bam/BamRandomAccessController_p.cpp.o CMakeFiles/BamTools_static.dir/internal/bam/BamReader_p.cpp.o CMakeFiles/BamTools_static.dir/internal/bam/BamWriter_p.cpp.o CMakeFiles/BamTools_static.dir/internal/index/BamIndexFactory_p.cpp.o CMakeFiles/BamTools_static.dir/internal/index/BamStandardIndex_p.cpp.o CMakeFiles/BamTools_static.dir/internal/index/BamToolsIndex_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/BamDeviceFactory_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/BamFile_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/BamFtp_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/BamHttp_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/BamPipe_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/BgzfStream_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/ByteArray_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/HostAddress_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/HostInfo_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/HttpHeader_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/ILocalIODevice_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/RollingBuffer_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/TcpSocket_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/TcpSocketEngine_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/TcpSocketEngine_unix_p.cpp.o CMakeFiles/BamTools_static.dir/internal/sam/SamFormatParser_p.cpp.o CMakeFiles/BamTools_static.dir/internal/sam/SamFormatPrinter_p.cpp.o CMakeFiles/BamTools_static.dir/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools_static.dir/internal/utils/BamException_p.cpp.o [ 57%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/index/BamIndexFactory_p.cpp [ 58%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp [ 59%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/index/BamToolsIndex_p.cpp [ 60%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/io/BamDeviceFactory_p.cpp [ 61%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/io/BamFile_p.cpp [ 62%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/io/BamFtp_p.cpp [ 63%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/io/BamHttp_p.cpp [ 64%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/io/BamPipe_p.cpp [ 65%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/io/BgzfStream_p.cpp [ 66%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/io/ByteArray_p.cpp [ 67%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp [ 68%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/io/HostInfo_p.cpp /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp: In member function ‘void BamTools::Internal::HostAddress::Clear()’: /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp:273:11: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘struct BamTools::Internal::IPv6Address’; use assignment or value-initialization instead [-Wclass-memaccess] 273 | memset(&m_ip6Address, 0, sizeof(IPv6Address)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp:10: /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.h:31:8: note: ‘struct BamTools::Internal::IPv6Address’ declared here 31 | struct IPv6Address | ^~~~~~~~~~~ [ 69%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/io/HttpHeader_p.cpp [ 70%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/io/ILocalIODevice_p.cpp [ 71%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/io/RollingBuffer_p.cpp [ 72%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/io/TcpSocket_p.cpp [ 73%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/io/TcpSocketEngine_p.cpp /usr/bin/ranlib libbamtools.a [ 74%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api/internal/io/TcpSocketEngine_unix_p.cpp [ 75%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -g 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libbamtools.so cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbamtools.so.2.5.1 -o libbamtools.so.2.5.1 CMakeFiles/BamTools.dir/BamAlignment.cpp.o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o CMakeFiles/BamTools.dir/BamReader.cpp.o CMakeFiles/BamTools.dir/BamWriter.cpp.o CMakeFiles/BamTools.dir/SamHeader.cpp.o CMakeFiles/BamTools.dir/SamProgram.cpp.o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o CMakeFiles/BamTools.dir/SamSequence.cpp.o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o 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CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -lz cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/cmake -E cmake_symlink_library libbamtools.so.2.5.1 libbamtools.so.2.5.1 libbamtools.so make[3]: Leaving directory '/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 79%] Built target BamTools make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/depend make[3]: Entering directory 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src/utils/CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/utils/CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o -MF CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o.d -o CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/utils/bamtools_fasta.cpp [ 82%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY 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CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/toolkit/bamtools_index.cpp [ 91%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/utils -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o -MF CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/toolkit/bamtools_merge.cpp [ 92%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/utils -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o -MF 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CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/toolkit/bamtools_resolve.cpp [ 94%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/utils -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o -MF CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/toolkit/bamtools_revert.cpp [ 95%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/utils -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o -MF CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/toolkit/bamtools_sort.cpp [ 96%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/utils -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o -MF CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/toolkit/bamtools_split.cpp [ 97%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/utils -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o -MF CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/toolkit/bamtools_stats.cpp [ 98%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/api -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/utils -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit -I/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o -MF CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o -c /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/src/toolkit/bamtools.cpp [100%] Linking CXX executable bamtools cd /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/cmake -E cmake_link_script CMakeFiles/bamtools_cmd.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o -o bamtools -Wl,-rpath,/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api: ../utils/libbamtools-utils.a -ljsoncpp ../api/libbamtools.so.2.5.1 make[3]: Leaving directory '/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [100%] Built target bamtools_cmd make[2]: Leaving directory '/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test-arch make[1]: Entering directory '/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg' cd obj-* && ln -s src/toolkit/ bin dh_auto_test --arch cd obj-x86_64-linux-gnu && make -j4 test ARGS\+=--verbose ARGS\+=-j4 make[2]: Entering directory '/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j4 UpdateCTestConfiguration from :/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/DartConfiguration.tcl Test project /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: bamtools_help 1: Test command: /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/bin/bamtools "--help" 1: Test timeout computed to be: 10000000 test 2 Start 2: bamtools_stats 2: Test command: /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/bin/bamtools "stats" "-in" "/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/../debian/sam_spec_example.bam" 2: Test timeout computed to be: 10000000 1: 1: usage: bamtools [--help] COMMAND [ARGS] 1: 1: Available bamtools commands: 1: convert Converts between BAM and a number of other formats 1: count Prints number of alignments in BAM file(s) 1: coverage Prints coverage statistics from the input BAM file 1: filter Filters BAM file(s) by user-specified criteria 1: header Prints BAM header information 1: index Generates index for BAM file 1: merge Merge multiple BAM files into single file 1: random Select random alignments from existing BAM file(s), intended more as a testing tool. 1: resolve Resolves paired-end reads (marking the IsProperPair flag as needed) 1: revert Removes duplicate marks and restores original base qualities 1: sort Sorts the BAM file according to some criteria 1: split Splits a BAM file on user-specified property, creating a new BAM output file for each value found 1: stats Prints some basic statistics from input BAM file(s) 1: 1: See 'bamtools help COMMAND' for more information on a specific command. 1: 1/2 Test #1: bamtools_help .................... Passed 0.01 sec 2: 2: ********************************************** 2: Stats for BAM file(s): 2: ********************************************** 2: 2: Total reads: 6 2: Mapped reads: 6 (100%) 2: Forward strand: 4 (66.6667%) 2: Reverse strand: 2 (33.3333%) 2: Failed QC: 0 (0%) 2: Duplicates: 0 (0%) 2: Paired-end reads: 2 (33.3333%) 2: 'Proper-pairs': 2 (100%) 2: Both pairs mapped: 2 (100%) 2: Read 1: 1 2: Read 2: 1 2: Singletons: 0 (0%) 2: 2/2 Test #2: bamtools_stats ................... Passed 0.01 sec 100% tests passed, 0 tests failed out of 2 Total Test time (real) = 0.01 sec make[2]: Leaving directory '/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[1]: Leaving directory '/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a cd obj-x86_64-linux-gnu && make -j4 install DESTDIR=/build/bamtools-IV7gCF/bamtools-2.5.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg -B/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/shared/bamtools_global.h -- Installing: /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/bamtools-1.pc -- Installing: /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libbamtools.so.2.5.1 -- Installing: /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libbamtools.so -- Installing: /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libbamtools.a -- Installing: /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/api_global.h -- Installing: /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamAlgorithms.h -- Installing: /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamAlignment.h -- Installing: /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamAux.h -- Installing: /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamConstants.h -- Installing: /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamIndex.h -- Installing: /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamMultiReader.h -- Installing: /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamReader.h -- Installing: /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamWriter.h -- Installing: /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/IBamIODevice.h -- Installing: /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamConstants.h -- Installing: /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamHeader.h -- Installing: /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamProgram.h -- Installing: /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamProgramChain.h -- Installing: /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamReadGroup.h -- Installing: /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamReadGroupDictionary.h -- Installing: /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamSequence.h -- Installing: /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamSequenceDictionary.h -- Installing: /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/algorithms/Sort.h -- Installing: /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/debian/tmp/usr/bin/bamtools -- Set runtime path of "/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/debian/tmp/usr/bin/bamtools" to "" make[1]: Leaving directory '/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' debian/rules override_dh_install-arch make[1]: Entering directory '/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg' dh_install --arch d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/x86_64-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libbamtools-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libbamtools2.5.1/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libbamtools.a debian/libbamtools-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libbamtools.so debian/libbamtools-dev/usr/lib/x86_64-linux-gnu mv /build/bamtools-IV7gCF/bamtools-2.5.1+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libbamtools.so.2.5.1 debian/libbamtools2.5.1/usr/lib/x86_64-linux-gnu PKGDEV=libbamtools-dev PKGSHL=libbamtools2.5.1 install -d -m 755 debian/libbamtools-dev/usr/include mv debian/tmp/usr/include/bamtools debian/libbamtools-dev/usr/include install -d -m 755 debian/libbamtools-dev/usr/lib/x86_64-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libbamtools-dev/usr/lib/x86_64-linux-gnu/pkgconfig make[1]: Leaving directory '/build/bamtools-IV7gCF/bamtools-2.5.1+dfsg' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package libbamtools-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'bamtools' in '../bamtools_2.5.1+dfsg-10+b1_amd64.deb'. dpkg-deb: building package 'libbamtools-dev' in '../libbamtools-dev_2.5.1+dfsg-10+b1_amd64.deb'. dpkg-deb: building package 'libbamtools2.5.1-dbgsym' in '../libbamtools2.5.1-dbgsym_2.5.1+dfsg-10+b1_amd64.deb'. dpkg-deb: building package 'bamtools-dbgsym' in '../bamtools-dbgsym_2.5.1+dfsg-10+b1_amd64.deb'. dpkg-deb: building package 'libbamtools2.5.1' in '../libbamtools2.5.1_2.5.1+dfsg-10+b1_amd64.deb'. dpkg-genbuildinfo --build=any -O../bamtools_2.5.1+dfsg-10+b1_amd64.buildinfo dpkg-genchanges --build=any -O../bamtools_2.5.1+dfsg-10+b1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/bamtools-IV7gCF /tmp/bamtools-2.5.1+dfsg-10+b17nqpcb7j I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.mhpal_9obh... I: success in 1555.7890 seconds md5: bamtools-dbgsym_2.5.1+dfsg-10+b1_amd64.deb: OK md5: bamtools_2.5.1+dfsg-10+b1_amd64.deb: OK md5: Value of 'md5' differs for libbamtools-dev_2.5.1+dfsg-10+b1_amd64.deb md5: Size differs for libbamtools-dev_2.5.1+dfsg-10+b1_amd64.deb md5: libbamtools2.5.1-dbgsym_2.5.1+dfsg-10+b1_amd64.deb: OK md5: libbamtools2.5.1_2.5.1+dfsg-10+b1_amd64.deb: OK sha1: bamtools-dbgsym_2.5.1+dfsg-10+b1_amd64.deb: OK sha1: bamtools_2.5.1+dfsg-10+b1_amd64.deb: OK sha1: Value of 'sha1' differs for libbamtools-dev_2.5.1+dfsg-10+b1_amd64.deb sha1: Size differs for libbamtools-dev_2.5.1+dfsg-10+b1_amd64.deb sha1: libbamtools2.5.1-dbgsym_2.5.1+dfsg-10+b1_amd64.deb: OK sha1: libbamtools2.5.1_2.5.1+dfsg-10+b1_amd64.deb: OK sha256: bamtools-dbgsym_2.5.1+dfsg-10+b1_amd64.deb: OK sha256: bamtools_2.5.1+dfsg-10+b1_amd64.deb: OK sha256: Value of 'sha256' differs for libbamtools-dev_2.5.1+dfsg-10+b1_amd64.deb sha256: Size differs for libbamtools-dev_2.5.1+dfsg-10+b1_amd64.deb sha256: libbamtools2.5.1-dbgsym_2.5.1+dfsg-10+b1_amd64.deb: OK sha256: libbamtools2.5.1_2.5.1+dfsg-10+b1_amd64.deb: OK Checksums: FAIL diffoscope run passed