Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/b/bali-phy/bali-phy_3.6.1+dfsg-1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/bali-phy-3.6.1+dfsg-1f4c2exov/bali-phy_3.6.1+dfsg-1_amd64.buildinfo Get source package info: bali-phy=3.6.1+dfsg-1 Source URL: http://snapshot.notset.fr/mr/package/bali-phy/3.6.1+dfsg-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.4-1 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.51 bash=5.1-3+b1 binutils=2.37-4 binutils-common=2.37-4 binutils-x86-64-linux-gnu=2.37-4 bsdextrautils=2.37.2-1 bsdutils=1:2.37.2-1 build-essential=12.9 bzip2=1.0.8-4 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.3.0-8 dash=0.5.11+git20210120+802ebd4-1 debconf=1.5.77 debhelper=13.4.1 debianutils=5.4-3 dh-autoreconf=20 dh-strip-nondeterminism=1.12.0-1 diffutils=1:3.7-5 dpkg=1.20.9 dpkg-dev=1.20.9 dwz=0.14-1 file=1:5.39-3 findutils=4.8.0-1 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 g++=4:10.2.1-1 g++-10=10.3.0-8 gcc=4:10.2.1-1 gcc-10=10.3.0-8 gcc-10-base=10.3.0-8 gcc-11-base=11.2.0-3 gettext=0.21-4 gettext-base=0.21-4 grep=3.6-1 groff-base=1.22.4-6 gzip=1.10-4 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libarchive-zip-perl=1.68-1 libasan6=11.2.0-3 libatomic1=11.2.0-3 libattr1=1:2.5.1-1 libaudit-common=1:3.0.5-1 libaudit1=1:3.0.5-1 libbinutils=2.37-4 libblkid-dev=2.37.2-1 libblkid1=2.37.2-1 libboost-chrono-dev=1.74.0.3 libboost-chrono1.74-dev=1.74.0-9 libboost-chrono1.74.0=1.74.0-9 libboost-dev=1.74.0.3 libboost-filesystem-dev=1.74.0.3 libboost-filesystem1.74-dev=1.74.0-9 libboost-filesystem1.74.0=1.74.0-9 libboost-program-options-dev=1.74.0.3 libboost-program-options1.74-dev=1.74.0-9 libboost-program-options1.74.0=1.74.0-9 libboost-random-dev=1.74.0.3 libboost-random1.74-dev=1.74.0-9 libboost-random1.74.0=1.74.0-9 libboost-system-dev=1.74.0.3 libboost-system1.74-dev=1.74.0-9 libboost-system1.74.0=1.74.0-9 libboost1.74-dev=1.74.0-9 libbrotli-dev=1.0.9-2+b2 libbrotli1=1.0.9-2+b2 libbsd0=0.11.3-1 libbz2-1.0=1.0.8-4 libc-bin=2.31-17 libc-dev-bin=2.31-17 libc6=2.31-17 libc6-dev=2.31-17 libcairo-gobject2=1.16.0-5 libcairo-script-interpreter2=1.16.0-5 libcairo2=1.16.0-5 libcairo2-dev=1.16.0-5 libcap-ng0=0.7.9-2.2+b1 libcc1-0=11.2.0-3 libcmark-gfm-extensions0=0.29.0.gfm.0-6 libcmark-gfm0=0.29.0.gfm.0-6 libcom-err2=1.46.4-1 libcrypt-dev=1:4.4.25-1 libcrypt1=1:4.4.25-1 libctf-nobfd0=2.37-4 libctf0=2.37-4 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.260 libdebhelper-perl=13.4.1 libdpkg-perl=1.20.9 libeigen3-dev=3.3.9-2 libelf1=0.185-2 libexpat1=2.2.10-2 libexpat1-dev=2.2.10-2 libffi-dev=3.3-6 libffi7=3.3-6 libfile-stripnondeterminism-perl=1.12.0-1 libfontconfig-dev=2.13.1-4.2 libfontconfig1=2.13.1-4.2 libfontconfig1-dev=2.13.1-4.2 libfreetype-dev=2.10.4+dfsg-1 libfreetype6=2.10.4+dfsg-1 libfreetype6-dev=2.10.4+dfsg-1 libgcc-10-dev=10.3.0-8 libgcc-s1=11.2.0-3 libgcrypt20=1.8.7-6 libgdbm-compat4=1.20-1 libgdbm6=1.20-1 libglib2.0-0=2.68.4-1 libglib2.0-bin=2.68.4-1 libglib2.0-data=2.68.4-1 libglib2.0-dev=2.68.4-1 libglib2.0-dev-bin=2.68.4-1 libgmp10=2:6.2.1+dfsg-1 libgomp1=11.2.0-3 libgpg-error0=1.42-3 libgssapi-krb5-2=1.18.3-7 libice-dev=2:1.0.10-1 libice6=2:1.0.10-1 libicu67=67.1-7 libisl23=0.23-1 libitm1=11.2.0-3 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 liblsan0=11.2.0-3 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 liblzo2-2=2.10-2 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmd0=1.0.3-3 libmount-dev=2.37.2-1 libmount1=2.37.2-1 libmpc3=1.2.0-1 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libncursesw6=6.2+20201114-4 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libpam-modules=1.4.0-10 libpam-modules-bin=1.4.0-10 libpam-runtime=1.4.0-10 libpam0g=1.4.0-10 libpcre16-3=2:8.39-13 libpcre2-16-0=10.36-2 libpcre2-32-0=10.36-2 libpcre2-8-0=10.36-2 libpcre2-dev=10.36-2 libpcre2-posix2=10.36-2 libpcre3=2:8.39-13 libpcre3-dev=2:8.39-13 libpcre32-3=2:8.39-13 libpcrecpp0v5=2:8.39-13 libperl5.32=5.32.1-5 libpipeline1=1.5.3-1 libpixman-1-0=0.40.0-1 libpixman-1-dev=0.40.0-1 libpng-dev=1.6.37-3 libpng16-16=1.6.37-3 libpthread-stubs0-dev=0.4-1 libpython3-stdlib=3.9.2-3 libpython3.9-minimal=3.9.2-1 libpython3.9-stdlib=3.9.2-1 libquadmath0=11.2.0-3 librange-v3-dev=0.11.0-1 libreadline8=8.1-2 libseccomp2=2.5.1-1 libselinux1=3.1-3 libselinux1-dev=3.1-3 libsepol1=3.1-1 libsepol1-dev=3.1-1 libsigsegv2=2.13-1 libsm-dev=2:1.2.3-1 libsm6=2:1.2.3-1 libsmartcols1=2.37.2-1 libsqlite3-0=3.36.0-2 libssl1.1=1.1.1l-1 libstdc++-10-dev=10.3.0-8 libstdc++6=11.2.0-3 libsub-override-perl=0.09-2 libsystemd0=247.9-1 libtinfo6=6.2+20201114-4 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtsan0=11.2.0-3 libubsan1=11.2.0-3 libuchardet0=0.0.7-1 libudev1=247.9-1 libunistring2=0.9.10-6 libuuid1=2.37.2-1 libx11-6=2:1.7.2-1 libx11-data=2:1.7.2-1 libx11-dev=2:1.7.2-1 libxau-dev=1:1.0.9-1 libxau6=1:1.0.9-1 libxcb-render0=1.14-3 libxcb-render0-dev=1.14-3 libxcb-shm0=1.14-3 libxcb-shm0-dev=1.14-3 libxcb1=1.14-3 libxcb1-dev=1.14-3 libxdmcp-dev=1:1.1.2-3 libxdmcp6=1:1.1.2-3 libxext-dev=2:1.3.3-1.1 libxext6=2:1.3.3-1.1 libxml2=2.9.10+dfsg-6.7 libxrender-dev=1:0.9.10-1 libxrender1=1:0.9.10-1 libzstd1=1.4.8+dfsg-2.1 linux-libc-dev=5.10.46-4 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-2 mawk=1.3.4.20200120-2 media-types=4.0.0 meson=0.57.0+really0.56.2-0.1 ncurses-base=6.2+20201114-4 ncurses-bin=6.2+20201114-4 ninja-build=1.10.1-1 nlohmann-json3-dev=3.9.1-1 pandoc=2.9.2.1-1+b1 pandoc-data=2.9.2.1-1 patch=2.7.6-7 perl=5.32.1-5 perl-base=5.32.1-5 perl-modules-5.32=5.32.1-5 pkg-config=0.29.2-1 po-debconf=1.0.21+nmu1 python3=3.9.2-3 python3-distutils=3.9.2-1 python3-lib2to3=3.9.2-1 python3-minimal=3.9.2-3 python3-pkg-resources=52.0.0-4 python3.9=3.9.2-1 python3.9-minimal=3.9.2-1 readline-common=8.1-2 rpcsvc-proto=1.4.2-4 sed=4.7-1 sensible-utils=0.0.17 sysvinit-utils=2.96-7 tar=1.34+dfsg-1 tzdata=2021a-1 ucf=3.0043 util-linux=2.37.2-1 uuid-dev=2.37.2-1 x11-common=1:7.7+23 x11proto-dev=2020.1-1 x11proto-xext-dev=2020.1-1 xorg-sgml-doctools=1:1.11-1.1 xtrans-dev=1.4.0-1 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210902T030735Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210902T030735Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210830T083809Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d bali-phy=3.6.1+dfsg-1 && mkdir -p /build/bali-phy-pBMxof && dpkg-source --no-check -x /*.dsc /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg && chown -R builduser:builduser /build/bali-phy-pBMxof" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1630338626" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/bali-phy-pBMxof /tmp/bali-phy-3.6.1+dfsg-1f4c2exov bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20210830T083809Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.6xgIZeqVZE as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.6xgIZeqVZE Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-1). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210830T083809Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210830T083809Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (613 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4670 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-17) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210902T030735Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210902T030735Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210830T083809Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.6xgIZeqVZE Get:1 http://snapshot.notset.fr/archive/debian/20210902T030735Z bookworm InRelease [112 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20210830T083809Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210902T030735Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210902T030735Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210902T030735Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210902T030735Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210902T030735Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210902T030735Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210902T030735Z bookworm/main Sources [11.6 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210902T030735Z bookworm/main amd64 Packages [11.3 MB] Fetched 23.0 MB in 20s (1163 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.6xgIZeqVZE I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d bali-phy=3.6.1+dfsg-1 && mkdir -p /build/bali-phy-pBMxof && dpkg-source --no-check -x /*.dsc /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg && chown -R builduser:builduser /build/bali-phy-pBMxof"' exec /tmp/mmdebstrap.6xgIZeqVZE Reading package lists... NOTICE: 'bali-phy' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/bali-phy.git Please use: git clone https://salsa.debian.org/med-team/bali-phy.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1130 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210902T030735Z bookworm/main bali-phy 3.6.1+dfsg-1 (dsc) [2217 B] Get:2 http://snapshot.notset.fr/archive/debian/20210902T030735Z bookworm/main bali-phy 3.6.1+dfsg-1 (tar) [1124 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210902T030735Z bookworm/main bali-phy 3.6.1+dfsg-1 (diff) [4520 B] Fetched 1130 kB in 1s (1171 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'bali-phy_3.6.1+dfsg-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting bali-phy in /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg dpkg-source: info: unpacking bali-phy_3.6.1+dfsg.orig.tar.xz dpkg-source: info: unpacking bali-phy_3.6.1+dfsg-1.debian.tar.xz I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1630338626" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.6xgIZeqVZE dpkg-buildpackage: info: source package bali-phy dpkg-buildpackage: info: source version 3.6.1+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=meson dh_auto_clean -O--buildsystem=meson dh_autoreconf_clean -O--buildsystem=meson dh_clean -O--buildsystem=meson debian/rules binary-arch dh binary-arch --buildsystem=meson dh_update_autotools_config -a -O--buildsystem=meson dh_autoreconf -a -O--buildsystem=meson debian/rules override_dh_auto_configure make[1]: Entering directory '/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg' dh_auto_configure -- -Dextra-tools=false --buildtype=release -Db_ndebug=true cd obj-x86_64-linux-gnu && LC_ALL=C.UTF-8 meson .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/x86_64-linux-gnu -Dextra-tools=false --buildtype=release -Db_ndebug=true The Meson build system Version: 0.56.2 Source dir: /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg Build dir: /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/obj-x86_64-linux-gnu Build type: native build Project name: bali-phy Project version: 3.6.1 Using 'CFLAGS' from environment with value: '-g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3' Using 'LDFLAGS' from environment with value: '-Wl,-z,relro -Wl,-z,now' Using 'CPPFLAGS' from environment with value: '-Wdate-time -D_FORTIFY_SOURCE=2' C compiler for the host machine: cc (gcc 10.3.0 "cc (Debian 10.3.0-8) 10.3.0") C linker for the host machine: cc ld.bfd 2.37 Using 'CXXFLAGS' from environment with value: '-g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3' Using 'LDFLAGS' from environment with value: '-Wl,-z,relro -Wl,-z,now' Using 'CPPFLAGS' from environment with value: '-Wdate-time -D_FORTIFY_SOURCE=2' C++ compiler for the host machine: c++ (gcc 10.3.0 "c++ (Debian 10.3.0-8) 10.3.0") C++ linker for the host machine: c++ ld.bfd 2.37 Using 'CFLAGS' from environment with value: '-g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3' Using 'LDFLAGS' from environment with value: '-Wl,-z,relro -Wl,-z,now' Using 'CPPFLAGS' from environment with value: '-Wdate-time -D_FORTIFY_SOURCE=2' Using 'CXXFLAGS' from environment with value: '-g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3' Using 'LDFLAGS' from environment with value: '-Wl,-z,relro -Wl,-z,now' Using 'CPPFLAGS' from environment with value: '-Wdate-time -D_FORTIFY_SOURCE=2' Host machine cpu family: x86_64 Host machine cpu: x86_64 Has header "sys/resource.h" : YES Has header "fenv.h" : YES Checking for function "log2" : YES Checking for function "feenableexcept" : YES Configuring config.h using configuration Compiler for C++ supports arguments -Wno-sign-compare: YES Compiler for C++ supports arguments -Wno-maybe-uninitialized: YES Compiler for C++ supports arguments -Woverloaded-virtual: YES Compiler for C++ supports arguments -Wstrict-aliasing: YES Compiler for C++ supports arguments -Wno-unknown-pragmas: YES Compiler for C++ supports arguments -fdiagnostics-show-template-tree: YES Compiler for C++ supports arguments -funroll-loops: YES Compiler for C++ supports arguments -fno-math-errno: YES Compiler for C++ supports arguments -fno-signed-zeros: YES Run-time dependency threads found: YES Found pkg-config: /usr/bin/pkg-config (0.29.2) Run-time dependency cairo found: YES 1.16.0 Run-time dependency Boost (found: chrono, filesystem, program_options, random, system) found: YES 1.74.0 (/usr) Run-time dependency eigen3 found: YES 3.3.9 Has header "nlohmann/json.hpp" : YES Library dl found: YES Has header "range/v3/view/take.hpp" : YES Library m found: YES Program pandoc found: YES (/usr/bin/pandoc) Program /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/tests/run-tests.py found: YES (/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/tests/run-tests.py) Build targets in project: 87 bali-phy 3.6.1 Architecture host: linux Libraries BOOST: system Eigen: system nlohmann::json: system range v3: system cairo: system Directories prefix: /usr Configuration optimization: 3 debug: False assertions: disabled Option b_ndebug is: true [default: if-release] Found ninja-1.10.1 at /usr/bin/ninja make[1]: Leaving directory '/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg' dh_auto_build -a -O--buildsystem=meson cd obj-x86_64-linux-gnu && LC_ALL=C.UTF-8 ninja -j4 -v [1/297] /usr/bin/meson --internal vcstagger ../src/git-version.h.in src/git-version.h '' /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/src @git_message@ '(.*)' /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/src/git log -n1 '--date=format:%b %d %Y %k:%M:%S' '--pretty=format:[%D commit %h] (%cd)' [2/297] c++ -Isrc/util/libutil.a.p -Isrc/util -I../src/util -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ 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-I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/util/libutil.a.p/file-readers.cc.o -MF src/util/libutil.a.p/file-readers.cc.o.d -o src/util/libutil.a.p/file-readers.cc.o -c ../src/util/file-readers.cc [22/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tree_sequencetree.cc.o -MF src/libcommon.a.p/tree_sequencetree.cc.o.d -o src/libcommon.a.p/tree_sequencetree.cc.o -c ../src/tree/sequencetree.cc [23/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tree_tree-util.cc.o -MF src/libcommon.a.p/tree_tree-util.cc.o.d -o src/libcommon.a.p/tree_tree-util.cc.o -c ../src/tree/tree-util.cc [24/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tree_randomtree.cc.o -MF src/libcommon.a.p/tree_randomtree.cc.o.d -o src/libcommon.a.p/tree_randomtree.cc.o -c ../src/tree/randomtree.cc [25/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/tree-align_n_indels.cc.o -MF src/libcommon.a.p/tree-align_n_indels.cc.o.d -o src/libcommon.a.p/tree-align_n_indels.cc.o -c ../src/tree-align/n_indels.cc [26/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree 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-fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/sequence_sequence-format.cc.o -MF src/libcommon.a.p/sequence_sequence-format.cc.o.d -o src/libcommon.a.p/sequence_sequence-format.cc.o -c ../src/sequence/sequence-format.cc [29/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat 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-DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/alignment_alignment-util.cc.o -MF src/libcommon.a.p/alignment_alignment-util.cc.o.d -o src/libcommon.a.p/alignment_alignment-util.cc.o -c ../src/alignment/alignment-util.cc [32/297] c++ -Isrc/libcommon.a.p -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libcommon.a.p/alignment_alignment-random.cc.o -MF src/libcommon.a.p/alignment_alignment-random.cc.o.d -o src/libcommon.a.p/alignment_alignment-random.cc.o -c ../src/alignment/alignment-random.cc [33/297] rm -f src/util/libutil.a && gcc-ar csrD src/util/libutil.a src/util/libutil.a.p/string_pred.cc.o src/util/libutil.a.p/string_sanitize.cc.o src/util/libutil.a.p/string_strip.cc.o src/util/libutil.a.p/string_split.cc.o src/util/libutil.a.p/log-level.cc.o src/util/libutil.a.p/io.cc.o src/util/libutil.a.p/graph.cc.o src/util/libutil.a.p/range.cc.o src/util/libutil.a.p/demangle.cc.o src/util/libutil.a.p/mapping.cc.o src/util/libutil.a.p/cmdline.cc.o src/util/libutil.a.p/rng.cc.o src/util/libutil.a.p/permute.cc.o src/util/libutil.a.p/file-paths.cc.o src/util/libutil.a.p/ptree.cc.o src/util/libutil.a.p/text.cc.o src/util/libutil.a.p/myexception.cc.o src/util/libutil.a.p/time.cc.o 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src/libcommon.a.p/tools_consensus-tree.cc.o -c ../src/tools/consensus-tree.cc [54/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/preprocess.cc.o -MF src/computation/libcomputation.a.p/preprocess.cc.o.d -o src/computation/libcomputation.a.p/preprocess.cc.o -c ../src/computation/preprocess.cc [55/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/program.cc.o -MF src/computation/libcomputation.a.p/program.cc.o.d -o src/computation/libcomputation.a.p/program.cc.o -c ../src/computation/program.cc ../src/computation/program.cc: In member function ‘void Program::check_dependencies()’: ../src/computation/program.cc:155:10: warning: unused variable ‘index’ [-Wunused-variable] 155 | int index = find_module(name); | ^~~~~ [56/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/context.cc.o -MF src/computation/libcomputation.a.p/context.cc.o.d -o src/computation/libcomputation.a.p/context.cc.o -c ../src/computation/context.cc [57/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/module.cc.o -MF src/computation/libcomputation.a.p/module.cc.o.d -o src/computation/libcomputation.a.p/module.cc.o -c ../src/computation/module.cc [58/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/loader.cc.o -MF src/computation/libcomputation.a.p/loader.cc.o.d -o src/computation/libcomputation.a.p/loader.cc.o -c ../src/computation/loader.cc [59/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/operations.cc.o -MF src/computation/libcomputation.a.p/operations.cc.o.d -o src/computation/libcomputation.a.p/operations.cc.o -c ../src/computation/operations.cc [60/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/param.cc.o -MF src/computation/libcomputation.a.p/param.cc.o.d -o src/computation/libcomputation.a.p/param.cc.o -c ../src/computation/param.cc [61/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/parser_desugar.cc.o -MF src/computation/libcomputation.a.p/parser_desugar.cc.o.d -o src/computation/libcomputation.a.p/parser_desugar.cc.o -c ../src/computation/parser/desugar.cc [62/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/parser_rename.cc.o -MF src/computation/libcomputation.a.p/parser_rename.cc.o.d -o src/computation/libcomputation.a.p/parser_rename.cc.o -c ../src/computation/parser/rename.cc [63/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/parser_driver.cc.o -MF src/computation/libcomputation.a.p/parser_driver.cc.o.d -o src/computation/libcomputation.a.p/parser_driver.cc.o -c ../src/computation/parser/driver.cc [64/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 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-Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/optimization_float-out.cc.o -MF src/computation/libcomputation.a.p/optimization_float-out.cc.o.d -o src/computation/libcomputation.a.p/optimization_float-out.cc.o -c ../src/computation/optimization/float-out.cc [103/297] rm -f src/libcommon.a && gcc-ar csrD src/libcommon.a src/libcommon.a.p/tree_newick-tokenizer.cc.o src/libcommon.a.p/tree_sequencetree.cc.o src/libcommon.a.p/tree_tree.cc.o src/libcommon.a.p/tree_tree-util.cc.o src/libcommon.a.p/tree_randomtree.cc.o src/libcommon.a.p/tree-align_n_indels.cc.o src/libcommon.a.p/sequence_alphabet.cc.o src/libcommon.a.p/sequence_sequence.cc.o src/libcommon.a.p/sequence_sequence-format.cc.o src/libcommon.a.p/tools_read-trees.cc.o src/libcommon.a.p/alignment_alignment-util.cc.o src/libcommon.a.p/alignment_load.cc.o src/libcommon.a.p/alignment_alignment.cc.o src/libcommon.a.p/alignment_alignment-random.cc.o src/libcommon.a.p/alignment_index-matrix.cc.o src/libcommon.a.p/tree-align_link.cc.o src/libcommon.a.p/models_path.cc.o src/libcommon.a.p/tools_statistics.cc.o src/libcommon.a.p/tools_partition.cc.o src/libcommon.a.p/tools_tree-dist.cc.o src/libcommon.a.p/tools_parsimony.cc.o src/libcommon.a.p/tools_mctree.cc.o src/libcommon.a.p/tools_stats-table.cc.o src/libcommon.a.p/tools_findroot.cc.o src/libcommon.a.p/tools_optimize.cc.o src/libcommon.a.p/tools_distance-report.cc.o src/libcommon.a.p/tools_inverse.cc.o src/libcommon.a.p/tools_joint-A-T.cc.o src/libcommon.a.p/tools_distance-methods.cc.o src/libcommon.a.p/tools_consensus-tree.cc.o [104/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_dp_hmm.cc.o -MF src/libbaliphy.a.p/dp_dp_hmm.cc.o.d -o src/libbaliphy.a.p/dp_dp_hmm.cc.o -c ../src/dp/dp_hmm.cc [105/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/optimization_inliner.cc.o -MF src/computation/libcomputation.a.p/optimization_inliner.cc.o.d -o src/computation/libcomputation.a.p/optimization_inliner.cc.o -c ../src/computation/optimization/inliner.cc [106/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/optimization_occurrence.cc.o -MF src/computation/libcomputation.a.p/optimization_occurrence.cc.o.d -o src/computation/libcomputation.a.p/optimization_occurrence.cc.o -c ../src/computation/optimization/occurrence.cc [107/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_dp-engine.cc.o -MF src/libbaliphy.a.p/dp_dp-engine.cc.o.d -o src/libbaliphy.a.p/dp_dp-engine.cc.o -c ../src/dp/dp-engine.cc [108/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_dp-array.cc.o -MF src/libbaliphy.a.p/dp_dp-array.cc.o.d -o src/libbaliphy.a.p/dp_dp-array.cc.o -c ../src/dp/dp-array.cc [109/297] c++ -Isrc/computation/libcomputation.a.p -Isrc/computation -I../src/computation -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -isystem../external/immer -isystemexternal/immer/ -MD -MQ src/computation/libcomputation.a.p/optimization_simplifier.cc.o -MF src/computation/libcomputation.a.p/optimization_simplifier.cc.o.d -o src/computation/libcomputation.a.p/optimization_simplifier.cc.o -c ../src/computation/optimization/simplifier.cc [110/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_dp-matrix.cc.o -MF src/libbaliphy.a.p/dp_dp-matrix.cc.o.d -o src/libbaliphy.a.p/dp_dp-matrix.cc.o -c ../src/dp/dp-matrix.cc [111/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 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-MD -MQ src/libbaliphy.a.p/dp_dp-cube.cc.o -MF src/libbaliphy.a.p/dp_dp-cube.cc.o.d -o src/libbaliphy.a.p/dp_dp-cube.cc.o -c ../src/dp/dp-cube.cc [113/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_3way.cc.o -MF src/libbaliphy.a.p/dp_3way.cc.o.d -o 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-I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/dp_5way.cc.o -MF src/libbaliphy.a.p/dp_5way.cc.o.d -o src/libbaliphy.a.p/dp_5way.cc.o -c ../src/dp/5way.cc [116/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe 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-O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/alignment_alignment-constraint.cc.o -MF src/libbaliphy.a.p/alignment_alignment-constraint.cc.o.d -o src/libbaliphy.a.p/alignment_alignment-constraint.cc.o -c ../src/alignment/alignment-constraint.cc [156/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/version.cc.o -MF src/libbaliphy.a.p/version.cc.o.d -o src/libbaliphy.a.p/version.cc.o -c ../src/version.cc ../src/version.cc:67:8: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 67 | s<<__DATE__<<" "<<__TIME__; | ^~~~~~~~ ../src/version.cc:67:23: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 67 | s<<__DATE__<<" "<<__TIME__; | ^~~~~~~~ [157/297] c++ -Isrc/libbaliphy.a.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/libbaliphy.a.p/tools_parsimony2.cc.o -MF src/libbaliphy.a.p/tools_parsimony2.cc.o.d -o src/libbaliphy.a.p/tools_parsimony2.cc.o -c ../src/tools/parsimony2.cc [158/297] c++ -Isrc/builtins/Data.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Data.so.p/Data.cc.o -MF src/builtins/Data.so.p/Data.cc.o.d -o src/builtins/Data.so.p/Data.cc.o -c ../src/builtins/Data.cc [159/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/link-partitions.cc.o -MF src/bali-phy/bali-phy.p/link-partitions.cc.o.d -o src/bali-phy/bali-phy.p/link-partitions.cc.o -c ../src/bali-phy/link-partitions.cc [160/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/bali-phy.cc.o -MF src/bali-phy/bali-phy.p/bali-phy.cc.o.d -o src/bali-phy/bali-phy.p/bali-phy.cc.o -c ../src/bali-phy/bali-phy.cc ../src/bali-phy/bali-phy.cc: In function ‘void report_mem()’: ../src/bali-phy/bali-phy.cc:122:9: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 122 | system(cmd.str().c_str()); | ~~~~~~^~~~~~~~~~~~~~~~~~~ [161/297] rm -f src/computation/libcomputation.a && gcc-ar csrD src/computation/libcomputation.a src/computation/libcomputation.a.p/object.cc.o src/computation/libcomputation.a.p/closure.cc.o src/computation/libcomputation.a.p/program.cc.o src/computation/libcomputation.a.p/preprocess.cc.o src/computation/libcomputation.a.p/module.cc.o src/computation/libcomputation.a.p/loader.cc.o src/computation/libcomputation.a.p/context.cc.o src/computation/libcomputation.a.p/operations.cc.o src/computation/libcomputation.a.p/param.cc.o src/computation/libcomputation.a.p/parser_desugar.cc.o src/computation/libcomputation.a.p/parser_desugar-case.cc.o src/computation/libcomputation.a.p/parser_rename.cc.o src/computation/libcomputation.a.p/parser_driver.cc.o src/computation/libcomputation.a.p/parser_lexer.cc.o src/computation/libcomputation.a.p/parser_parser.cc.o src/computation/libcomputation.a.p/expression_operator.cc.o src/computation/libcomputation.a.p/expression_expression.cc.o src/computation/libcomputation.a.p/expression_constructor.cc.o src/computation/libcomputation.a.p/expression_expression_ref.cc.o src/computation/libcomputation.a.p/expression_AST_node.cc.o src/computation/libcomputation.a.p/expression_apply.cc.o src/computation/libcomputation.a.p/expression_substitute.cc.o src/computation/libcomputation.a.p/expression_indexify.cc.o src/computation/libcomputation.a.p/expression_let.cc.o src/computation/libcomputation.a.p/expression_case.cc.o src/computation/libcomputation.a.p/expression_trim.cc.o src/computation/libcomputation.a.p/expression_tuple.cc.o src/computation/libcomputation.a.p/expression_list.cc.o src/computation/libcomputation.a.p/expression_var.cc.o src/computation/libcomputation.a.p/expression_lambda.cc.o src/computation/libcomputation.a.p/expression_random_variable.cc.o src/computation/libcomputation.a.p/expression_modifiable.cc.o src/computation/libcomputation.a.p/expression_reg_var.cc.o src/computation/libcomputation.a.p/expression_bool.cc.o src/computation/libcomputation.a.p/expression_resolved_symbol.cc.o src/computation/libcomputation.a.p/expression_maybe.cc.o src/computation/libcomputation.a.p/expression_do_block.cc.o src/computation/libcomputation.a.p/machine_args.cc.o src/computation/libcomputation.a.p/machine_tokens.cc.o src/computation/libcomputation.a.p/machine_graph_register.cc.o src/computation/libcomputation.a.p/machine_show_graph.cc.o src/computation/libcomputation.a.p/machine_evaluate.cc.o src/computation/libcomputation.a.p/machine_sums.cc.o src/computation/libcomputation.a.p/machine_gc.cc.o src/computation/libcomputation.a.p/machine_reroot.cc.o src/computation/libcomputation.a.p/machine_effects.cc.o src/computation/libcomputation.a.p/expression_kind.cc.o src/computation/libcomputation.a.p/optimization_free-vars.cc.o src/computation/libcomputation.a.p/optimization_set-levels.cc.o src/computation/libcomputation.a.p/optimization_float-out.cc.o src/computation/libcomputation.a.p/optimization_occurrence.cc.o src/computation/libcomputation.a.p/optimization_inliner.cc.o src/computation/libcomputation.a.p/optimization_simplifier.cc.o [162/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/help.cc.o -MF src/bali-phy/bali-phy.p/help.cc.o.d -o src/bali-phy/bali-phy.p/help.cc.o -c ../src/bali-phy/help.cc [163/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/files.cc.o -MF src/bali-phy/bali-phy.p/files.cc.o.d -o src/bali-phy/bali-phy.p/files.cc.o -c ../src/bali-phy/files.cc [164/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/system.cc.o -MF src/bali-phy/bali-phy.p/system.cc.o.d -o src/bali-phy/bali-phy.p/system.cc.o -c ../src/bali-phy/system.cc [165/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/A-T-model.cc.o -MF src/bali-phy/bali-phy.p/A-T-model.cc.o.d -o src/bali-phy/bali-phy.p/A-T-model.cc.o -c ../src/bali-phy/A-T-model.cc [166/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/loggers.cc.o -MF src/bali-phy/bali-phy.p/loggers.cc.o.d -o src/bali-phy/bali-phy.p/loggers.cc.o -c ../src/bali-phy/loggers.cc [167/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/cmd_line.cc.o -MF src/bali-phy/bali-phy.p/cmd_line.cc.o.d -o src/bali-phy/bali-phy.p/cmd_line.cc.o -c ../src/bali-phy/cmd_line.cc [168/297] c++ -Isrc/bali-phy/bali-phy.p -Isrc/bali-phy -I../src/bali-phy -I. -I.. -Isrc -I../src -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/bali-phy/bali-phy.p/paths.cc.o -MF src/bali-phy/bali-phy.p/paths.cc.o.d -o src/bali-phy/bali-phy.p/paths.cc.o -c ../src/bali-phy/paths.cc [169/297] c++ -o src/builtins/Data.so src/builtins/Data.so.p/Data.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Data.so -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -Wl,--end-group [170/297] c++ -Isrc/builtins/Array.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Array.so.p/Array.cc.o -MF src/builtins/Array.so.p/Array.cc.o.d -o src/builtins/Array.so.p/Array.cc.o -c ../src/builtins/Array.cc [171/297] c++ -o src/builtins/Array.so src/builtins/Array.so.p/Array.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Array.so -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -Wl,--end-group [172/297] c++ -Isrc/builtins/Pair.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Pair.so.p/Pair.cc.o -MF src/builtins/Pair.so.p/Pair.cc.o.d -o src/builtins/Pair.so.p/Pair.cc.o -c ../src/builtins/Pair.cc [173/297] c++ -o src/builtins/Pair.so src/builtins/Pair.so.p/Pair.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Pair.so -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -Wl,--end-group [174/297] c++ -Isrc/builtins/Prelude.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Prelude.so.p/Prelude.cc.o -MF src/builtins/Prelude.so.p/Prelude.cc.o.d -o src/builtins/Prelude.so.p/Prelude.cc.o -c ../src/builtins/Prelude.cc [175/297] c++ -o src/builtins/Prelude.so src/builtins/Prelude.so.p/Prelude.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Prelude.so -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -Wl,--end-group [176/297] c++ -Isrc/builtins/Alphabet.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Alphabet.so.p/Alphabet.cc.o -MF src/builtins/Alphabet.so.p/Alphabet.cc.o.d -o src/builtins/Alphabet.so.p/Alphabet.cc.o -c ../src/builtins/Alphabet.cc [177/297] c++ -o src/builtins/Alphabet.so src/builtins/Alphabet.so.p/Alphabet.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Alphabet.so -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -Wl,--end-group [178/297] c++ -Isrc/builtins/Modifiables.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Modifiables.so.p/Modifiables.cc.o -MF src/builtins/Modifiables.so.p/Modifiables.cc.o.d -o src/builtins/Modifiables.so.p/Modifiables.cc.o -c ../src/builtins/Modifiables.cc [179/297] c++ -o src/builtins/Modifiables.so src/builtins/Modifiables.so.p/Modifiables.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Modifiables.so -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -Wl,--end-group [180/297] c++ -Isrc/builtins/Distribution.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Distribution.so.p/Distribution.cc.o -MF src/builtins/Distribution.so.p/Distribution.cc.o.d -o src/builtins/Distribution.so.p/Distribution.cc.o -c ../src/builtins/Distribution.cc [181/297] c++ -Isrc/builtins/PopGen.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/PopGen.so.p/PopGen.cc.o -MF src/builtins/PopGen.so.p/PopGen.cc.o.d -o src/builtins/PopGen.so.p/PopGen.cc.o -c ../src/builtins/PopGen.cc [182/297] c++ -o src/builtins/Distribution.so src/builtins/Distribution.so.p/Distribution.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Distribution.so -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -Wl,--end-group [183/297] c++ -Isrc/builtins/Alignment.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Alignment.so.p/Alignment.cc.o -MF src/builtins/Alignment.so.p/Alignment.cc.o.d -o src/builtins/Alignment.so.p/Alignment.cc.o -c ../src/builtins/Alignment.cc [184/297] c++ -o src/builtins/PopGen.so src/builtins/PopGen.so.p/PopGen.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,PopGen.so -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -Wl,--end-group [185/297] c++ -o src/builtins/Alignment.so src/builtins/Alignment.so.p/Alignment.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Alignment.so -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -Wl,--end-group [186/297] c++ -Isrc/builtins/Range.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Range.so.p/Range.cc.o -MF src/builtins/Range.so.p/Range.cc.o.d -o src/builtins/Range.so.p/Range.cc.o -c ../src/builtins/Range.cc [187/297] c++ -o src/builtins/Range.so src/builtins/Range.so.p/Range.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Range.so -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -Wl,--end-group [188/297] c++ -Isrc/builtins/Vector.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Vector.so.p/Vector.cc.o -MF src/builtins/Vector.so.p/Vector.cc.o.d -o src/builtins/Vector.so.p/Vector.cc.o -c ../src/builtins/Vector.cc [189/297] c++ -o src/builtins/Vector.so src/builtins/Vector.so.p/Vector.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Vector.so -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -Wl,--end-group [190/297] c++ -Isrc/builtins/MCMC.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/MCMC.so.p/MCMC.cc.o -MF src/builtins/MCMC.so.p/MCMC.cc.o.d -o src/builtins/MCMC.so.p/MCMC.cc.o -c ../src/builtins/MCMC.cc [191/297] c++ -o src/builtins/MCMC.so src/builtins/MCMC.so.p/MCMC.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,MCMC.so -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -Wl,--end-group [192/297] c++ -Isrc/builtins/SModel.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/SModel.so.p/SModel.cc.o -MF src/builtins/SModel.so.p/SModel.cc.o.d -o src/builtins/SModel.so.p/SModel.cc.o -c ../src/builtins/SModel.cc [193/297] c++ -o src/builtins/SModel.so src/builtins/SModel.so.p/SModel.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,SModel.so -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -Wl,--end-group [194/297] c++ -Isrc/builtins/Environment.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Environment.so.p/Environment.cc.o -MF src/builtins/Environment.so.p/Environment.cc.o.d -o src/builtins/Environment.so.p/Environment.cc.o -c ../src/builtins/Environment.cc [195/297] c++ -o src/builtins/Environment.so src/builtins/Environment.so.p/Environment.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Environment.so -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -Wl,--end-group [196/297] c++ -Isrc/builtins/Real.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Real.so.p/Real.cc.o -MF src/builtins/Real.so.p/Real.cc.o.d -o src/builtins/Real.so.p/Real.cc.o -c ../src/builtins/Real.cc [197/297] c++ -o src/builtins/Real.so src/builtins/Real.so.p/Real.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Real.so -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -Wl,--end-group [198/297] c++ -Isrc/builtins/Bits.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Bits.so.p/Bits.cc.o -MF src/builtins/Bits.so.p/Bits.cc.o.d -o src/builtins/Bits.so.p/Bits.cc.o -c ../src/builtins/Bits.cc [199/297] c++ -o src/builtins/Bits.so src/builtins/Bits.so.p/Bits.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Bits.so -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -Wl,--end-group [200/297] c++ -Isrc/builtins/Text.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Text.so.p/Text.cc.o -MF src/builtins/Text.so.p/Text.cc.o.d -o src/builtins/Text.so.p/Text.cc.o -c ../src/builtins/Text.cc [201/297] c++ -o src/builtins/Text.so src/builtins/Text.so.p/Text.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Text.so -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -Wl,--end-group [202/297] c++ -Isrc/builtins/Foreign.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Foreign.so.p/Foreign.cc.o -MF src/builtins/Foreign.so.p/Foreign.cc.o.d -o src/builtins/Foreign.so.p/Foreign.cc.o -c ../src/builtins/Foreign.cc [203/297] c++ -o src/builtins/Foreign.so src/builtins/Foreign.so.p/Foreign.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Foreign.so -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -Wl,--end-group [204/297] c++ -Isrc/builtins/Char.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/Char.so.p/Char.cc.o -MF src/builtins/Char.so.p/Char.cc.o.d -o src/builtins/Char.so.p/Char.cc.o -c ../src/builtins/Char.cc [205/297] c++ -o src/builtins/Char.so src/builtins/Char.so.p/Char.cc.o -Wl,--as-needed -Wl,--allow-shlib-undefined -Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,Char.so -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -Wl,--end-group [206/297] c++ -Isrc/model_P.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/model_P.p/tools_model_P.cc.o -MF src/model_P.p/tools_model_P.cc.o.d -o src/model_P.p/tools_model_P.cc.o -c ../src/tools/model_P.cc [207/297] c++ -o src/model_P src/model_P.p/tools_model_P.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [208/297] c++ -Isrc/builtins/SMC.so.p -Isrc/builtins -I../src/builtins -I../src/util/include -I. -I.. -Isrc -I../src -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -isystem/usr/include/eigen3 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/builtins/SMC.so.p/SMC.cc.o -MF src/builtins/SMC.so.p/SMC.cc.o.d -o src/builtins/SMC.so.p/SMC.cc.o -c ../src/builtins/SMC.cc [209/297] c++ -Isrc/statreport.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 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-o src/alignment-cat.p/tools_alignment-cat.cc.o -c ../src/tools/alignment-cat.cc [229/297] rm -f src/libbaliphy.a && gcc-ar csrD src/libbaliphy.a src/libbaliphy.a.p/dp_dp_hmm.cc.o src/libbaliphy.a.p/dp_hmm.cc.o src/libbaliphy.a.p/dp_dp-engine.cc.o src/libbaliphy.a.p/dp_dp-array.cc.o src/libbaliphy.a.p/dp_dp-matrix.cc.o src/libbaliphy.a.p/dp_dp-cube.cc.o src/libbaliphy.a.p/dp_2way.cc.o src/libbaliphy.a.p/dp_3way.cc.o src/libbaliphy.a.p/dp_5way.cc.o src/libbaliphy.a.p/dp_alignment-sums.cc.o src/libbaliphy.a.p/mcmc_mcmc.cc.o src/libbaliphy.a.p/mcmc_proposals.cc.o src/libbaliphy.a.p/mcmc_slice-sampling.cc.o src/libbaliphy.a.p/mcmc_AIS.cc.o src/libbaliphy.a.p/mcmc_logger.cc.o src/libbaliphy.a.p/mcmc_moves.cc.o src/libbaliphy.a.p/mcmc_sample-branch-lengths.cc.o src/libbaliphy.a.p/mcmc_sample-alignment.cc.o src/libbaliphy.a.p/mcmc_sample-topology-SPR.cc.o src/libbaliphy.a.p/mcmc_sample-topology-NNI.cc.o src/libbaliphy.a.p/mcmc_sample-two-nodes.cc.o src/libbaliphy.a.p/mcmc_sample-node.cc.o src/libbaliphy.a.p/mcmc_sample-cube.cc.o src/libbaliphy.a.p/mcmc_sample-tri.cc.o src/libbaliphy.a.p/mcmc_setup.cc.o src/libbaliphy.a.p/substitution_substitution.cc.o src/libbaliphy.a.p/substitution_parsimony.cc.o src/libbaliphy.a.p/math_exponential.cc.o src/libbaliphy.a.p/math_eigenvalue.cc.o src/libbaliphy.a.p/math_pow2.cc.o src/libbaliphy.a.p/models_parameters.cc.o src/libbaliphy.a.p/models_site-compression.cc.o src/libbaliphy.a.p/models_TreeInterface.cc.o src/libbaliphy.a.p/models_setup.cc.o src/libbaliphy.a.p/models_rules.cc.o src/libbaliphy.a.p/models_parse.cc.o src/libbaliphy.a.p/models_typecheck.cc.o src/libbaliphy.a.p/models_unification.cc.o src/libbaliphy.a.p/models_model.cc.o src/libbaliphy.a.p/tree-align_link2.cc.o src/libbaliphy.a.p/probability_choose.cc.o src/libbaliphy.a.p/probability_probability.cc.o src/libbaliphy.a.p/imodel_imodel.cc.o src/libbaliphy.a.p/alignment_alignment-constraint.cc.o src/libbaliphy.a.p/alignment_alignment-util2.cc.o src/libbaliphy.a.p/tree-align_n_indels2.cc.o src/libbaliphy.a.p/tools_parsimony2.cc.o src/libbaliphy.a.p/version.cc.o [230/297] c++ -o src/alignment-find src/alignment-find.p/tools_alignment-find.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [231/297] c++ -o src/alignment-translate src/alignment-translate.p/tools_alignment-translate.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [232/297] c++ -o src/alignment-cat src/alignment-cat.p/tools_alignment-cat.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [233/297] c++ -Isrc/tree-mean-lengths.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/tree-mean-lengths.p/tools_tree-mean-lengths.cc.o -MF src/tree-mean-lengths.p/tools_tree-mean-lengths.cc.o.d -o src/tree-mean-lengths.p/tools_tree-mean-lengths.cc.o -c ../src/tools/tree-mean-lengths.cc [234/297] c++ -Isrc/mctree-mean-lengths.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/mctree-mean-lengths.p/tools_mctree-mean-lengths.cc.o -MF src/mctree-mean-lengths.p/tools_mctree-mean-lengths.cc.o.d -o src/mctree-mean-lengths.p/tools_mctree-mean-lengths.cc.o -c ../src/tools/mctree-mean-lengths.cc [235/297] c++ -Isrc/trees-consensus.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/trees-consensus.p/tools_trees-consensus.cc.o -MF src/trees-consensus.p/tools_trees-consensus.cc.o.d -o src/trees-consensus.p/tools_trees-consensus.cc.o -c ../src/tools/trees-consensus.cc [236/297] c++ -o src/tree-mean-lengths src/tree-mean-lengths.p/tools_tree-mean-lengths.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [237/297] c++ -o src/mctree-mean-lengths src/mctree-mean-lengths.p/tools_mctree-mean-lengths.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [238/297] c++ -Isrc/trees-to-SRQ.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/trees-to-SRQ.p/tools_trees-to-SRQ.cc.o -MF src/trees-to-SRQ.p/tools_trees-to-SRQ.cc.o.d -o src/trees-to-SRQ.p/tools_trees-to-SRQ.cc.o -c ../src/tools/trees-to-SRQ.cc [239/297] c++ -o src/trees-consensus src/trees-consensus.p/tools_trees-consensus.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [240/297] c++ -Isrc/pickout.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/pickout.p/tools_pickout.cc.o -MF src/pickout.p/tools_pickout.cc.o.d -o src/pickout.p/tools_pickout.cc.o -c ../src/tools/pickout.cc [241/297] c++ -o src/pickout src/pickout.p/tools_pickout.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [242/297] c++ -Isrc/cut-range.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/cut-range.p/tools_cut-range.cc.o -MF src/cut-range.p/tools_cut-range.cc.o.d -o src/cut-range.p/tools_cut-range.cc.o -c ../src/tools/cut-range.cc [243/297] c++ -o src/trees-to-SRQ src/trees-to-SRQ.p/tools_trees-to-SRQ.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [244/297] c++ -o src/cut-range src/cut-range.p/tools_cut-range.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [245/297] c++ -Isrc/trees-distances.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/trees-distances.p/tools_trees-distances.cc.o -MF src/trees-distances.p/tools_trees-distances.cc.o.d -o src/trees-distances.p/tools_trees-distances.cc.o -c ../src/tools/trees-distances.cc [246/297] c++ -Isrc/alignment-thin.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-thin.p/tools_alignment-thin.cc.o -MF src/alignment-thin.p/tools_alignment-thin.cc.o.d -o src/alignment-thin.p/tools_alignment-thin.cc.o -c ../src/tools/alignment-thin.cc [247/297] c++ -Isrc/alignments-diff.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/alignments-diff.p/tools_alignments-diff.cc.o -MF src/alignments-diff.p/tools_alignments-diff.cc.o.d -o src/alignments-diff.p/tools_alignments-diff.cc.o -c ../src/tools/alignments-diff.cc [248/297] c++ -o src/trees-distances src/trees-distances.p/tools_trees-distances.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [249/297] c++ -o src/alignments-diff src/alignments-diff.p/tools_alignments-diff.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [250/297] c++ -o src/alignment-thin src/alignment-thin.p/tools_alignment-thin.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [251/297] c++ -Isrc/tree-tool.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/tree-tool.p/tools_tree-tool.cc.o -MF src/tree-tool.p/tools_tree-tool.cc.o.d -o src/tree-tool.p/tools_tree-tool.cc.o -c ../src/tools/tree-tool.cc [252/297] c++ -Isrc/alignment-draw.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-draw.p/tools_alignment-draw.cc.o -MF src/alignment-draw.p/tools_alignment-draw.cc.o.d -o src/alignment-draw.p/tools_alignment-draw.cc.o -c ../src/tools/alignment-draw.cc [253/297] c++ -Isrc/alignment-draw.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-draw.p/tools_colors.cc.o -MF src/alignment-draw.p/tools_colors.cc.o.d -o src/alignment-draw.p/tools_colors.cc.o -c ../src/tools/colors.cc [254/297] c++ -Isrc/alignment-distances.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/alignment-distances.p/tools_alignment-distances.cc.o -MF src/alignment-distances.p/tools_alignment-distances.cc.o.d -o src/alignment-distances.p/tools_alignment-distances.cc.o -c ../src/tools/alignment-distances.cc [255/297] c++ -o src/tree-tool src/tree-tool.p/tools_tree-tool.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [256/297] c++ -o src/alignment-draw src/alignment-draw.p/tools_alignment-draw.cc.o src/alignment-draw.p/tools_colors.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [257/297] c++ -Isrc/trees-bootstrap.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/trees-bootstrap.p/tools_bootstrap.cc.o -MF src/trees-bootstrap.p/tools_bootstrap.cc.o.d -o src/trees-bootstrap.p/tools_bootstrap.cc.o -c ../src/tools/bootstrap.cc [258/297] c++ -Isrc/trees-bootstrap.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/trees-bootstrap.p/tools_trees-bootstrap.cc.o -MF src/trees-bootstrap.p/tools_trees-bootstrap.cc.o.d -o src/trees-bootstrap.p/tools_trees-bootstrap.cc.o -c ../src/tools/trees-bootstrap.cc [259/297] c++ -o src/alignment-distances src/alignment-distances.p/tools_alignment-distances.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [260/297] c++ -Isrc/draw-tree.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/draw-tree.p/tools_draw-tree.cc.o -MF src/draw-tree.p/tools_draw-tree.cc.o.d -o src/draw-tree.p/tools_draw-tree.cc.o -c ../src/tools/draw-tree.cc ../src/tools/draw-tree.cc: In function ‘MC_tree_with_lengths collapse_MC_tree(const MC_tree_with_lengths&)’: ../src/tools/draw-tree.cc:3351:10: warning: unused variable ‘right1’ [-Wunused-variable] 3351 | int right1 = MC1.mapping[b1]; | ^~~~~~ [261/297] c++ -o src/trees-bootstrap src/trees-bootstrap.p/tools_trees-bootstrap.cc.o src/trees-bootstrap.p/tools_bootstrap.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [262/297] c++ -Isrc/extract-ancestors.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/extract-ancestors.p/tools_extract-ancestors.cc.o -MF src/extract-ancestors.p/tools_extract-ancestors.cc.o.d -o src/extract-ancestors.p/tools_extract-ancestors.cc.o -c ../src/tools/extract-ancestors.cc [263/297] c++ -o src/draw-tree src/draw-tree.p/tools_draw-tree.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -lm /usr/lib/x86_64-linux-gnu/libcairo.so -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [264/297] c++ -Isrc/summarize-ancestors.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/summarize-ancestors.p/tools_summarize-ancestors.cc.o -MF src/summarize-ancestors.p/tools_summarize-ancestors.cc.o.d -o src/summarize-ancestors.p/tools_summarize-ancestors.cc.o -c ../src/tools/summarize-ancestors.cc [265/297] c++ -Isrc/bali-subsample.p -Isrc -I../src -I. -I.. -I../src/util/include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -O3 -DHAVE_CONFIG_H -Wno-sign-compare -Wno-maybe-uninitialized -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -fdiagnostics-show-template-tree -funroll-loops -fno-math-errno -fno-signed-zeros -DNDEBUG_DP -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_CHRONO_DYN_LINK=1 -DBOOST_SYSTEM_DYN_LINK=1 -DBOOST_FILESYSTEM_DYN_LINK=1 -DBOOST_RANDOM_DYN_LINK -DBOOST_ALL_NO_LIB -MD -MQ src/bali-subsample.p/tools_subsample.cc.o -MF src/bali-subsample.p/tools_subsample.cc.o.d -o src/bali-subsample.p/tools_subsample.cc.o -c ../src/tools/subsample.cc [266/297] c++ -o src/bali-subsample src/bali-subsample.p/tools_subsample.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [267/297] /usr/bin/meson --internal exe --capture doc/bali-phy.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/bali-phy.md [268/297] /usr/bin/meson --internal exe --capture doc/model_P.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/model_P.md [269/297] /usr/bin/meson --internal exe --capture doc/statreport.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/statreport.md [270/297] /usr/bin/meson --internal exe --capture doc/stats-select.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/stats-select.md [271/297] /usr/bin/meson --internal exe --capture doc/alignment-gild.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-gild.md [272/297] /usr/bin/meson --internal exe --capture doc/alignment-consensus.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-consensus.md [273/297] /usr/bin/meson --internal exe --capture doc/alignment-max.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-max.md [274/297] /usr/bin/meson --internal exe --capture doc/alignment-chop-internal.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-chop-internal.md [275/297] /usr/bin/meson --internal exe --capture doc/alignment-indices.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-indices.md [276/297] /usr/bin/meson --internal exe --capture doc/alignment-info.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-info.md [277/297] /usr/bin/meson --internal exe --capture doc/alignment-cat.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-cat.md [278/297] /usr/bin/meson --internal exe --capture doc/alignment-translate.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-translate.md [279/297] /usr/bin/meson --internal exe --capture doc/alignment-find.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-find.md [280/297] /usr/bin/meson --internal exe --capture doc/trees-consensus.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/trees-consensus.md [281/297] /usr/bin/meson --internal exe --capture doc/tree-mean-lengths.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/tree-mean-lengths.md [282/297] /usr/bin/meson --internal exe --capture doc/mctree-mean-lengths.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/mctree-mean-lengths.md [283/297] /usr/bin/meson --internal exe --capture doc/trees-to-SRQ.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/trees-to-SRQ.md [284/297] /usr/bin/meson --internal exe --capture doc/alignments-diff.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignments-diff.md [285/297] /usr/bin/meson --internal exe --capture doc/tree-tool.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/tree-tool.md [286/297] /usr/bin/meson --internal exe --capture doc/alignment-distances.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-distances.md [287/297] /usr/bin/meson --internal exe --capture doc/alignment-draw.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/alignment-draw.md [288/297] /usr/bin/meson --internal exe --capture doc/trees-bootstrap.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/trees-bootstrap.md [289/297] /usr/bin/meson --internal exe --capture doc/draw-tree.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/draw-tree.md [290/297] /usr/bin/meson --internal exe --capture doc/extract-ancestors.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/extract-ancestors.md [291/297] /usr/bin/meson --internal exe --capture doc/summarize-ancestors.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/summarize-ancestors.md [292/297] /usr/bin/meson --internal exe --capture doc/bali-subsample.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/bali-subsample.md [293/297] /usr/bin/meson --internal exe --capture doc/bp-analyze.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/bp-analyze.md [294/297] /usr/bin/meson --internal exe --capture doc/bali-phy-pkg.1 -- /usr/bin/pandoc -s -t man -f markdown-smart ../doc/man/bali-phy-pkg.md [295/297] c++ -o src/extract-ancestors src/extract-ancestors.p/tools_extract-ancestors.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [296/297] c++ -o src/bali-phy/bali-phy src/bali-phy/bali-phy.p/link-partitions.cc.o src/bali-phy/bali-phy.p/bali-phy.cc.o src/bali-phy/bali-phy.p/help.cc.o src/bali-phy/bali-phy.p/A-T-model.cc.o src/bali-phy/bali-phy.p/files.cc.o src/bali-phy/bali-phy.p/loggers.cc.o src/bali-phy/bali-phy.p/system.cc.o src/bali-phy/bali-phy.p/cmd_line.cc.o src/bali-phy/bali-phy.p/paths.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -Wl,-export-dynamic -Wl,--whole-archive -Wl,--start-group src/util/libutil.a src/libcommon.a src/computation/libcomputation.a src/libbaliphy.a -Wl,--no-whole-archive -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -ldl -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX [297/297] c++ -o src/summarize-ancestors src/summarize-ancestors.p/tools_summarize-ancestors.cc.o -Wl,--as-needed -Wl,--no-undefined -Wl,-O1 -g -O2 -ffile-prefix-map=/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/util/libutil.a src/libcommon.a /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_random.so.1.74.0 -lm -Wl,--end-group -Wl,-rpath,XXXXXXXXXXXXXXXXXXXXXXXX dh_auto_test -a -O--buildsystem=meson cd obj-x86_64-linux-gnu && LC_ALL=C.UTF-8 MESON_TESTTHREADS=4 meson test ninja: Entering directory `/build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/obj-x86_64-linux-gnu' [1/4] Generating git-version.h with a custom command 1/36 bali-phy version OK 0.34s 2/36 bali-phy help OK 0.34s 3/36 bali-phy 5d test OK 9.12s 4/36 bali-phy 5d +A 50 OK 11.22s 5/36 bali-phy 48 +A 3 OK 17.35s 6/36 bali-phy 5d -A 200 OK 10.47s 7/36 model_P --help OK 0.01s 8/36 statreport --help OK 0.01s 9/36 stats-select --help OK 0.01s 10/36 alignment-gild --help OK 0.01s 11/36 alignment-consensus --help OK 0.01s 12/36 alignment-max --help OK 0.01s 13/36 alignment-chop-internal --help OK 0.01s 14/36 alignment-indices --help OK 0.01s 15/36 alignment-info --help OK 0.01s 16/36 alignment-cat --help OK 0.01s 17/36 alignment-translate --help OK 0.01s 18/36 alignment-find --help OK 0.01s 19/36 trees-consensus --help OK 0.01s 20/36 tree-mean-lengths --help OK 0.01s 21/36 mctree-mean-lengths --help OK 0.01s 22/36 trees-to-SRQ --help OK 0.01s 23/36 pickout --help OK 0.01s 24/36 cut-range --help OK 0.01s 25/36 trees-distances --help OK 0.01s 26/36 alignment-thin --help OK 0.01s 27/36 alignments-diff --help OK 0.01s 28/36 tree-tool --help OK 0.01s 29/36 alignment-distances --help OK 0.01s 30/36 alignment-draw --help OK 0.01s 31/36 trees-bootstrap --help OK 0.01s 32/36 draw-tree --help OK 1.33s 33/36 extract-ancestors --help OK 0.01s 34/36 summarize-ancestors --help OK 0.02s 35/36 subsample --help OK 0.01s 36/36 bali-phy testsuite OK 203.89s Ok: 36 Expected Fail: 0 Fail: 0 Unexpected Pass: 0 Skipped: 0 Timeout: 0 Full log written to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/obj-x86_64-linux-gnu/meson-logs/testlog.txt create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=meson dh_prep -a -O--buildsystem=meson dh_auto_install -a -O--buildsystem=meson cd obj-x86_64-linux-gnu && DESTDIR=/build/bali-phy-pBMxof/bali-phy-3.6.1\+dfsg/debian/bali-phy LC_ALL=C.UTF-8 ninja install [1/5] Generating git-version.h with a custom command [1/2] Installing files. Installing subdir /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/IModel.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/MCMC.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Parameters.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Parse.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/PopGen.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Prelude.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Probability.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Range.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/SMC.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/SModel.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Tree.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/BAliPhy/ATModel.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/BAliPhy Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/BAliPhy/ATModel/DataPartition.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/BAliPhy/ATModel Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Bio/Alignment.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Bio/Alphabet.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Bio/Sequence.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Bio/Alignment/Matrix.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio/Alignment Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Bio/Alignment/Pairwise.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Bio/Alignment Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Compiler/Base.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Compiler/Enum.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Compiler/IO.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Compiler/Num.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Compiler/Real.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Compiler/ST.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Compiler Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Control/DeepSeq.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Control Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Control/Monad.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Control Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Data/Array.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Data/BitVector.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Data/Bool.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Data/Char.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Data/Either.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Data/Eq.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Data/Function.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Data/Ix.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Data/JSON.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Data/List.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Data/Map.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Data/Matrix.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Data/Maybe.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Data/Ord.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Data/ReadFile.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Data/Set.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Data/Text.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Data/Tuple.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Data Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Foreign/Introspection.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Foreign/Pair.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Foreign/String.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Foreign/Vector.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Foreign Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Probability/Random.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Bernoulli.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Beta.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Binomial.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Categorical.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Cauchy.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Dirichlet.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/DirichletProcess.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Discrete.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/ExpTransform.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Exponential.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/FakeDist.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Gamma.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Geometric.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Laplace.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/List.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Mixture.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Normal.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Poisson.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/RandomAlignment.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Tree.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Probability/Distribution/Uniform.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Probability/Distribution Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/SModel/Codons.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/SModel/Doublets.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/SModel/Frequency.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/SModel/Likelihood.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/SModel/Nucleotides.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/SModel/ReversibleMarkov.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/SModel Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/System/Environment.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/System Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/haskell/Tree/Newick.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/haskell/Tree Installing subdir /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/distributions/bernoulli.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/distributions/beta.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/distributions/binomial.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/distributions/cauchy.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/distributions/exponential.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/distributions/gamma.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/distributions/geometric.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/distributions/iid.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/distributions/laplace.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/distributions/log_gamma.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/distributions/log_laplace.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/distributions/log_normal.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/distributions/normal.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/distributions/poisson.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/distributions/shifted_exponential.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/distributions/shifted_gamma.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/distributions/symmetric_dirichlet.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/distributions/symmetric_dirichlet_on.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/distributions/uniform.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/distributions/uniform_int.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/distributions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/functions/aa.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/functions/add.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/functions/codons.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/functions/cos.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/functions/div.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/functions/dna.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/functions/exp.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/functions/getAminoAcids.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/functions/getNucleotides.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/functions/intToDouble.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/functions/length.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/functions/letter_pairs.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/functions/letters.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/functions/log.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/functions/map.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/functions/mul.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/functions/num_branches.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/functions/quantile.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/functions/replicate.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/functions/rna.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/functions/sin.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/functions/sqrt.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/functions/standard_code.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/functions/sub.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/functions/take.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/functions/tan.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/functions/uniform_discretize.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/functions/unit_mixture.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/functions/zip.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/functions/zipWith.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/functions/constructors/Cons.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions/constructors Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/functions/constructors/Nil.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/functions/constructors Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/branch_site.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/dNdS.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/density.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/empirical.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/equ.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/f.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/f1x4.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/f3x4.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/f61.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/f81.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/fMutSel.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/fMutSel0.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/fe.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/get_q.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/gtr.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/gtr_sym.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/gwF.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/gy94.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/gy94_ext.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/hky85.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/hky85_sym.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/inv.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/jc69.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/jtt.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/k80.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/lg08.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/lg08_freq.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/m1a.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/m2a.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/m2a_test.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/m3.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/m3_test.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/m7.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/m8.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/m8a.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/m8a_test.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/markov_modulate_mixture.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/mg94.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/mg94_ext.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/mg94k.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/mixture.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/multiMixtureModel.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/multi_rate.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/mut_sel.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/mut_sel_aa.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/pam.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/parameter_mixture.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/rna_16a.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/rs05.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/rs07.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/rs07_relaxed_rates.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/sample.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/scaled_mixture.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/tn93.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/tn93_sym.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/wag.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/wag_freq.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/x2.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/x2_sym.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/x2x2.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/x3.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/x3_sym.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/x3x3.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/Covarion/galtier01.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Covarion Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/Covarion/huelsenbeck02.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Covarion Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/Covarion/ts98.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Covarion Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/Covarion/wang07.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Covarion Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/Frequencies/uniform.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Frequencies Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/Rates/free.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Rates Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/Rates/gamma.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Rates Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/bindings/models/Rates/log_normal.json to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/bindings/models/Rates Installing subdir /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/help to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/help/alphabets.txt to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/help/parameters.txt to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/help/alphabets/Codons.txt to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/help/alphabets/Doublets.txt to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/help/alphabets/Triplets.txt to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/help/alphabets/genetic-code.txt to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/help/commands/Rao-Blackwellize.txt to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/help/commands/align.txt to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/help/commands/alphabet.txt to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/help/commands/branch-lengths.txt to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/help/commands/config.txt to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/help/commands/disable.txt to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/help/commands/enable.txt to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/help/commands/imodel.txt to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/help/commands/iterations.txt to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/help/commands/link.txt to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/help/commands/model.txt to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/help/commands/name.txt to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/help/commands/package-path.txt to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/help/commands/pre-burnin.txt to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/help/commands/print.txt to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/help/commands/scale.txt to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/help/commands/seed.txt to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/help/commands/set.txt to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/help/commands/smodel.txt to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/help/commands/subsample.txt to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/help/commands/test.txt to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/help/commands/tree.txt to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/help/commands/unalign.txt to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/help/commands/verbose.txt to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/help/commands/version.txt to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/help/parameters/priors.txt to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/help/parameters Installing subdir /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/models/Demo6.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This will copy the file, but this will be changed in a future version of Meson to copy the symlink as is. Please update your build definitions so that it will not break when the change happens. Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/models/Demo5.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This will copy the file, but this will be changed in a future version of Meson to copy the symlink as is. Please update your build definitions so that it will not break when the change happens. Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/models/Demo4.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This will copy the file, but this will be changed in a future version of Meson to copy the symlink as is. Please update your build definitions so that it will not break when the change happens. Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/models/Demo3.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This will copy the file, but this will be changed in a future version of Meson to copy the symlink as is. Please update your build definitions so that it will not break when the change happens. Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/models/Demo2.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This will copy the file, but this will be changed in a future version of Meson to copy the symlink as is. Please update your build definitions so that it will not break when the change happens. Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/models/Demo1.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This will copy the file, but this will be changed in a future version of Meson to copy the symlink as is. Please update your build definitions so that it will not break when the change happens. Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/models/Coalmine.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This will copy the file, but this will be changed in a future version of Meson to copy the symlink as is. Please update your build definitions so that it will not break when the change happens. Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/models/Airline.hs to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Warning: trying to copy a symlink that points to a file. This will copy the file, but this will be changed in a future version of Meson to copy the symlink as is. Please update your build definitions so that it will not break when the change happens. Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-GTR-LN8-WPD.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-GTR-LN8-c50.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-GTR-LN8-c50.tree to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-clustalw.dnd to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-clustalw.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-dialign2-2.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-fsa.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-fsa.ph to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-muscle.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-poy.command to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-poy.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-poy.tree to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-poy.trees to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-probcons-RNA-trained.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-probcons-RNA.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-t-coffee.dnd to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-t-coffee.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-tcoffee.dnd to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25-tcoffee.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/25.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-MAP.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-MAP.tree to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-WPD.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-c10.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-consensus.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-clustalw.dnd to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-clustalw.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-dialign2-2.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-fsa.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-fsa.ph to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-muscle.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-probcons-RNA-trained.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-probcons-RNA.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-t-coffee.dnd to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48-t-coffee.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/48.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/5d-clustalw.dnd to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/5d-clustalw.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/5d-muscle.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/5S-rRNA/5d.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Duplications/hisA-hisF/hisA-hisF-muscle.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Duplications/hisA-hisF/hisA-hisF-muscle.ph to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Duplications/hisA-hisF/hisA-muscle.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Duplications/hisA-hisF/hisA.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Duplications/hisA-hisF/hisF-muscle.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Duplications/hisA-hisF/hisF.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Duplications/trp-tyr/trp-muscle.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Duplications/trp-tyr/trp-tyr-muscle.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Duplications/trp-tyr/trp.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Duplications/trp-tyr/tyr-muscle.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Duplications/trp-tyr/tyr.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/EF-Tu/12d-clustalw.dnd to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/EF-Tu/12d-clustalw.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/EF-Tu/12d-muscle.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/EF-Tu/12d.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/EF-Tu/25-mafft.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/EF-Tu/48b-clustalw.dnd to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/EF-Tu/48b-clustalw.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/EF-Tu/48b.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/EF-Tu/5d-clustalw.dnd to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/EF-Tu/5d-clustalw.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/EF-Tu/5d-muscle.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/EF-Tu/5d.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Enolase/enolase-38-trimmed.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Enolase Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Enolase/enolase-38.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Enolase Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4-c50.PP.tree to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4.MAP.tree to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-fsa.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-mafft.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-muscle.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.1.dnd to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.1.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.2.dnd to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.2.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/globins.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4-c50.PP.tree to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4.MAP.tree to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-fsa.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-mafft.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-muscle.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.1.dnd to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.1.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.2.dnd to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.2.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/sod.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/v-src-fsa.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/v-src-mafft.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/v-src-muscle.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Feng-Doolittle-1987/v-src.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Globins/10-globins-Lunter.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Globins/10-globins.xml to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Globins/bglobin.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Globins/few-clustalw.dnd to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Globins/few-clustalw.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Globins/few-muscle.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Globins/few.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Globins/globins.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Globins/many-muscle.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Globins/many.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Globins/some.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/HIV/HIVSIV.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/HIV/chain-2005/env-clustal-codons.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/HIV/chain-2005/env-clustal.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/HIV/chain-2005/env-common.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/HIV/chain-2005/env.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/HIV/chain-2005/pol-clustal.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/HIV/chain-2005/pol-common.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/HIV/chain-2005/pol.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/ITS/5.8S.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/ITS/ITS1-trimmed.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/ITS/ITS2-trimmed.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Miklos-2008/Src_homology_2_domains.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Miklos-2008/Starch_binding_domain.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Miklos-2008/annexin.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Miklos-2008/haloperoxidase.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Miklos-2008/lectin.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Miklos-2008/legume_lectin.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Miklos-2008/lysozyme.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Miklos-2008/papain.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Miklos-2008/parvalbumin-like.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Miklos-2008/rr_receiver.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Miklos-2008/subtilase.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/Miklos-2008/xylose_isomerase.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/ferns/README.txt to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/ferns/cleaned.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/ferns/config.txt to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/ferns/config2.txt to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/ferns/orig.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/ferns/orig.nex to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/lrRNA/NOTES.txt to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/lrRNA/keep.pl to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/lrRNA/mollusc.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/lrRNA/mollusc.gb to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/lrRNA/mollusc.rna.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/lrRNA/mollusc12.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/30-clustalw.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/30-clustalw.ph to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/30-muscle.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/30-muscle.ph to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/30.aln to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/30.dnd to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/30.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/30.ph to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/37-clustalw.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/37-clustalw.ph to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/37-muscle.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/37-muscle.ph to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/37.dnd to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/37.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/76-clustalw.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/76-clustalw.ph to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/76-muscle.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/76-muscle.ph to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/76.dnd to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/76.fasta to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/additional.accessions to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/other.accessions to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/paper.txt to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/examples/sequences/microbotryum/table1.accessions to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing src/bali-phy/bali-phy to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/bin Installing src/builtins/Array.so to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Data.so to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Prelude.so to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Alphabet.so to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Pair.so to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Modifiables.so to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Alignment.so to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/PopGen.so to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Distribution.so to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Range.so to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/SModel.so to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/MCMC.so to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Vector.so to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Environment.so to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/SMC.so to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Real.so to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Bits.so to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Foreign.so to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Text.so to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Char.so to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/model_P to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/bin Installing src/statreport to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/bin Installing src/stats-select to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/bin Installing src/alignment-gild to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/bin Installing src/alignment-consensus to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/bin Installing src/alignment-max to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/bin Installing src/alignment-chop-internal to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/bin Installing src/alignment-indices to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/bin Installing src/alignment-info to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/bin Installing src/alignment-cat to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/bin Installing src/alignment-translate to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/bin Installing src/alignment-find to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/bin Installing src/trees-consensus to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/bin Installing src/tree-mean-lengths to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/bin Installing src/mctree-mean-lengths to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/bin Installing src/trees-to-SRQ to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/bin Installing src/pickout to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/bin Installing src/cut-range to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/bin Installing src/trees-distances to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/bin Installing src/alignment-thin to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/bin Installing src/alignments-diff to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/bin Installing src/tree-tool to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/bin Installing src/alignment-distances to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/bin Installing src/alignment-draw to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/bin Installing src/trees-bootstrap to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/bin Installing src/draw-tree to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/bin Installing src/extract-ancestors to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/bin Installing src/summarize-ancestors to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/bin Installing src/bali-subsample to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/bin Installing doc/bali-phy.1 to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/model_P.1 to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/statreport.1 to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/stats-select.1 to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-gild.1 to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-consensus.1 to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-max.1 to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-chop-internal.1 to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-indices.1 to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-info.1 to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-cat.1 to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-translate.1 to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-find.1 to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/trees-consensus.1 to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/tree-mean-lengths.1 to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/mctree-mean-lengths.1 to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/trees-to-SRQ.1 to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/pickout.1 to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/cut-range.1 to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/trees-distances.1 to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-thin.1 to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignments-diff.1 to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/tree-tool.1 to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-distances.1 to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-draw.1 to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/trees-bootstrap.1 to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/draw-tree.1 to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/extract-ancestors.1 to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/summarize-ancestors.1 to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/bali-subsample.1 to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/bp-analyze.1 to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/bali-phy-pkg.1 to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/share/man/man1 Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/scripts/bp-analyze to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/bin Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/scripts/bali-phy-pkg to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/bin Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/scripts/compare-runs.R to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/scripts/compare-runs2.R to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/scripts/tree-plot.R to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec Installing /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/scripts/tree-plot-3D.R to /build/bali-phy-pBMxof/bali-phy-3.6.1+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec dh_installdocs -a -O--buildsystem=meson dh_installchangelogs -a -O--buildsystem=meson dh_installman -a -O--buildsystem=meson dh_installsystemduser -a -O--buildsystem=meson dh_lintian -a -O--buildsystem=meson dh_perl -a -O--buildsystem=meson dh_link -a -O--buildsystem=meson dh_strip_nondeterminism -a -O--buildsystem=meson dh_compress -a -O--buildsystem=meson dh_fixperms -a -O--buildsystem=meson dh_missing -a -O--buildsystem=meson dh_dwz -a -a -O--buildsystem=meson dh_strip -a -a -O--buildsystem=meson dh_makeshlibs -a -a -O--buildsystem=meson dh_shlibdeps -a -a -O--buildsystem=meson dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Foreign.so contains an unresolvable reference to symbol _Z13is_bool_falseRK14expression_ref: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Text.so contains an unresolvable reference to symbol _ZNK14expression_ref5printB5cxx11Ev: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/PopGen.so contains an unresolvable reference to symbol _Z6rstripRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES6_: it's probably a plugin dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Vector.so contains an unresolvable reference to symbol _ZTV6Object: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Range.so contains an unresolvable reference to symbol _ZNK6Object5printB5cxx11Ev: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Alignment.so contains an unresolvable reference to symbol _ZNK14expression_ref5printB5cxx11Ev: it's probably a plugin dpkg-shlibdeps: warning: 29 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Char.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Array.so contains an unresolvable reference to symbol total_index_op: it's probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/SModel.so contains an unresolvable reference to symbol _ZNK6Codons9translateEi: it's probably a plugin dpkg-shlibdeps: warning: 30 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Data.so contains an unresolvable reference to symbol _ZN16checked_ifstreamC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES7_: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Real.so contains an unresolvable reference to symbol _ZNK14expression_ref5printB5cxx11Ev: it's probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Bits.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Distribution.so contains an unresolvable reference to symbol _Z4betadd: it's probably a plugin dpkg-shlibdeps: warning: 32 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Pair.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/MCMC.so contains an unresolvable reference to symbol _ZN11context_ref13set_reg_valueEiO7closure: it's probably a plugin dpkg-shlibdeps: warning: 43 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Prelude.so contains an unresolvable reference to symbol _ZTV6Object: it's probably a plugin dpkg-shlibdeps: warning: 20 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Environment.so contains an unresolvable reference to symbol _ZTV6Object: it's probably a plugin dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/SMC.so contains an unresolvable reference to symbol _Z12find_columnsRK9alignmentRKSt8functionIFbiEE: it's probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Alphabet.so contains an unresolvable reference to symbol _ZTI6Object: it's probably a plugin dpkg-shlibdeps: warning: 26 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Modifiables.so contains an unresolvable reference to symbol _ZN19register_likelihoodC1Ei: it's probably a plugin dpkg-shlibdeps: warning: 26 other similar warnings have been skipped (use -v to see them all) dh_installdeb -a -O--buildsystem=meson dh_gencontrol -a -O--buildsystem=meson dh_md5sums -a -O--buildsystem=meson dh_builddeb -a -O--buildsystem=meson dpkg-deb: building package 'bali-phy-dbgsym' in '../bali-phy-dbgsym_3.6.1+dfsg-1_amd64.deb'. dpkg-deb: building package 'bali-phy' in '../bali-phy_3.6.1+dfsg-1_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../bali-phy_3.6.1+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/bali-phy-pBMxof /tmp/bali-phy-3.6.1+dfsg-1f4c2exov I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.6xgIZeqVZE... I: success in 6195.9224 seconds md5: Value of 'md5' differs for bali-phy-dbgsym_3.6.1+dfsg-1_amd64.deb md5: Size differs for bali-phy-dbgsym_3.6.1+dfsg-1_amd64.deb md5: Value of 'md5' differs for bali-phy_3.6.1+dfsg-1_amd64.deb md5: Size differs for bali-phy_3.6.1+dfsg-1_amd64.deb sha1: Value of 'sha1' differs for bali-phy-dbgsym_3.6.1+dfsg-1_amd64.deb sha1: Size differs for bali-phy-dbgsym_3.6.1+dfsg-1_amd64.deb sha1: Value of 'sha1' differs for bali-phy_3.6.1+dfsg-1_amd64.deb sha1: Size differs for bali-phy_3.6.1+dfsg-1_amd64.deb sha256: Value of 'sha256' differs for bali-phy-dbgsym_3.6.1+dfsg-1_amd64.deb sha256: Size differs for bali-phy-dbgsym_3.6.1+dfsg-1_amd64.deb sha256: Value of 'sha256' differs for bali-phy_3.6.1+dfsg-1_amd64.deb sha256: Size differs for bali-phy_3.6.1+dfsg-1_amd64.deb Checksums: FAIL Cannot generate diffoscope for bali-phy-dbgsym_3.6.1+dfsg-1_amd64.deb: Cannot find URL: http://snapshot.notset.fr/mr/file/1cffaccd37c9c25d9ba229200a1f0ffb5d514c7a313f54e50985873d7e82f3cf/download diffoscope run passed