Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/a/atropos/atropos_1.1.31+dfsg-1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/atropos-1.1.31+dfsg-1b3gg_4ob/atropos_1.1.31+dfsg-1_amd64.buildinfo Get source package info: atropos=1.1.31+dfsg-1 Source URL: http://snapshot.notset.fr/mr/package/atropos/1.1.31+dfsg-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.5-1.1 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12.2 base-passwd=3.5.52 bash=5.1-6 binutils=2.37.90.20220123-2 binutils-common=2.37.90.20220123-2 binutils-x86-64-linux-gnu=2.37.90.20220123-2 bsdextrautils=2.37.3-1+b1 bsdutils=1:2.37.3-1+b1 build-essential=12.9 bzip2=1.0.8-5 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-14 cython3=0.29.24-2 dash=0.5.11+git20210903+057cd650a4ed-3 debconf=1.5.79 debhelper=13.6 debianutils=5.7-0.1 dh-autoreconf=20 dh-python=5.20220119 dh-strip-nondeterminism=1.13.0-1 diffutils=1:3.7-5 dpkg=1.21.1 dpkg-dev=1.21.1 dwz=0.14-1 file=1:5.41-2 findutils=4.8.0-1 g++=4:11.2.0-2 g++-11=11.2.0-14 gcc=4:11.2.0-2 gcc-11=11.2.0-14 gcc-11-base=11.2.0-14 gettext=0.21-4 gettext-base=0.21-4 grep=3.7-1 groff-base=1.22.4-8 gzip=1.10-4 hostname=3.23 init-system-helpers=1.61 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libarchive-zip-perl=1.68-1 libasan6=11.2.0-14 libatomic1=11.2.0-14 libattr1=1:2.5.1-1 libaudit-common=1:3.0.6-1 libaudit1=1:3.0.6-1+b1 libbinutils=2.37.90.20220123-2 libblkid1=2.37.3-1+b1 libbrotli1=1.0.9-2+b3 libbz2-1.0=1.0.8-5 libc-bin=2.33-5 libc-dev-bin=2.33-5 libc6=2.33-5 libc6-dev=2.33-5 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcc1-0=11.2.0-14 libcom-err2=1.46.5-2 libcrypt-dev=1:4.4.27-1.1 libcrypt1=1:4.4.27-1.1 libctf-nobfd0=2.37.90.20220123-2 libctf0=2.37.90.20220123-2 libcurl3-gnutls=7.81.0-1 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.261 libdebhelper-perl=13.6 libdeflate0=1.9-1 libdpkg-perl=1.21.1 libelf1=0.186-1 libexpat1=2.4.4-1 libexpat1-dev=2.4.4-1 libffi8=3.4.2-4 libfile-stripnondeterminism-perl=1.13.0-1 libgcc-11-dev=11.2.0-14 libgcc-s1=11.2.0-14 libgcrypt20=1.9.4-5 libgdbm-compat4=1.22-1 libgdbm6=1.22-1 libgmp10=2:6.2.1+dfsg-3 libgnutls30=3.7.3-4+b1 libgomp1=11.2.0-14 libgpg-error0=1.43-3 libgssapi-krb5-2=1.18.3-7 libhogweed6=3.7.3-1 libhts3=1.13+ds-2 libhtscodecs2=1.1.1-3+b1 libicu67=67.1-7 libidn2-0=2.3.2-2 libisl23=0.24-2 libitm1=11.2.0-14 libjs-jquery=3.5.1+dfsg+~3.5.5-8 libjs-sphinxdoc=4.3.2-1 libjs-underscore=1.13.2~dfsg-2 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 libldap-2.4-2=2.4.59+dfsg-1 liblsan0=11.2.0-14 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.41-2 libmagic1=1:5.41-2 libmount1=2.37.3-1+b1 libmpc3=1.2.1-1 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libncursesw6=6.3-2 libnettle8=3.7.3-1 libnghttp2-14=1.43.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libp11-kit0=0.24.0-6 libpam-modules=1.4.0-11 libpam-modules-bin=1.4.0-11 libpam-runtime=1.4.0-11 libpam0g=1.4.0-11 libpcre2-8-0=10.39-3 libpcre3=2:8.39-13 libperl5.32=5.32.1-6 libpipeline1=1.5.5-1 libpsl5=0.21.0-1.2 libpython3-dev=3.9.8-1 libpython3-stdlib=3.9.8-1 libpython3.9=3.9.10-1 libpython3.9-dev=3.9.10-1 libpython3.9-minimal=3.9.10-1 libpython3.9-stdlib=3.9.10-1 libquadmath0=11.2.0-14 libreadline8=8.1.2-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg2-3 libsasl2-modules-db=2.1.27+dfsg2-3 libseccomp2=2.5.3-2 libselinux1=3.3-1+b1 libsigsegv2=2.14-1 libsmartcols1=2.37.3-1+b1 libsqlite3-0=3.37.2-2 libssh2-1=1.10.0-2 libssl1.1=1.1.1m-1 libstdc++-11-dev=11.2.0-14 libstdc++6=11.2.0-14 libsub-override-perl=0.09-2 libsystemd0=250.3-2 libtasn1-6=4.18.0-4 libtinfo6=6.3-2 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtsan0=11.2.0-14 libubsan1=11.2.0-14 libuchardet0=0.0.7-1 libudev1=250.3-2 libunistring2=0.9.10-6 libuuid1=2.37.3-1+b1 libxml2=2.9.12+dfsg-5+b1 libzstd1=1.4.8+dfsg-3 linux-libc-dev=5.15.15-2 login=1:4.8.1-2 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-4 mawk=1.3.4.20200120-3+b1 media-types=5.0.0 ncurses-base=6.3-2 ncurses-bin=6.3-2 patch=2.7.6-7 perl=5.32.1-6 perl-base=5.32.1-6 perl-modules-5.32=5.32.1-6 po-debconf=1.0.21+nmu1 python-babel-localedata=2.8.0+dfsg.1-7 python3=3.9.8-1 python3-attr=21.2.0-1 python3-babel=2.8.0+dfsg.1-7 python3-colorama=0.4.4-1 python3-dev=3.9.8-1 python3-distutils=3.9.10-1 python3-importlib-metadata=4.6.4-1 python3-iniconfig=1.1.1-1 python3-jinja2=3.0.1-2 python3-lib2to3=3.9.10-1 python3-loguru=0.5.3-5 python3-markupsafe=2.0.1-2+b1 python3-minimal=3.9.8-1 python3-more-itertools=8.10.0-2 python3-packaging=21.3-1 python3-pkg-resources=59.6.0-1.2 python3-pluggy=0.13.0-7.1 python3-pokrok=0.2.0-2 python3-py=1.10.0-1 python3-pyparsing=2.4.7-1 python3-pysam=0.17.0+ds-2+b1 python3-pytest=6.2.5-1 python3-setuptools=59.6.0-1.2 python3-setuptools-scm=6.3.2-2 python3-toml=0.10.2-1 python3-tomli=1.2.2-2 python3-tz=2021.3-1 python3-wheel=0.37.1-2 python3-xphyle=4.4.1-3 python3-zipp=1.0.0-3 python3.9=3.9.10-1 python3.9-dev=3.9.10-1 python3.9-minimal=3.9.10-1 readline-common=8.1.2-1 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.01-1 tar=1.34+dfsg-1 tzdata=2021e-1 util-linux=2.37.3-1+b1 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220207T030943Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220207T030943Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220219T084726Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20220130T212543Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d atropos=1.1.31+dfsg-1 && mkdir -p /build/atropos-qLruLP && dpkg-source --no-check -x /*.dsc /build/atropos-qLruLP/atropos-1.1.31+dfsg && chown -R builduser:builduser /build/atropos-qLruLP" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/atropos-qLruLP/atropos-1.1.31+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1643785354" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/atropos-qLruLP /tmp/atropos-1.1.31+dfsg-1b3gg_4ob bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20220130T212543Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.57FaGhzse8 as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.57FaGhzse8 Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.3-1+b1). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 136 kB of archives. After this operation, 406 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20220130T212543Z unstable/main amd64 libfakeroot amd64 1.27-1 [48.5 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220130T212543Z unstable/main amd64 fakeroot amd64 1.27-1 [87.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 136 kB in 0s (1012 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4697 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.27-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.27-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.27-1_amd64.deb ... Unpacking fakeroot (1.27-1) ... Setting up libfakeroot:amd64 (1.27-1) ... Setting up fakeroot (1.27-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-5) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220207T030943Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220207T030943Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220219T084726Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20220130T212543Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.57FaGhzse8 Get:1 http://snapshot.notset.fr/archive/debian/20220207T030943Z bookworm InRelease [129 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220219T084726Z unstable InRelease [165 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20220130T212543Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20220207T030943Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220207T030943Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20220207T030943Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220207T030943Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20220207T030943Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220207T030943Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20220207T030943Z bookworm/main Sources [11.8 MB] Get:5 http://snapshot.notset.fr/archive/debian/20220207T030943Z bookworm/main amd64 Packages [11.2 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20220219T084726Z unstable/main amd64 Packages Err:6 http://snapshot.notset.fr/archive/debian/20220219T084726Z unstable/main amd64 Packages 404 Not Found [IP: 10.13.0.253 80] Ign:6 http://snapshot.notset.fr/archive/debian/20220219T084726Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20220219T084726Z unstable/main amd64 Packages [12.2 MB] Fetched 35.5 MB in 30s (1201 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.57FaGhzse8 I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d atropos=1.1.31+dfsg-1 && mkdir -p /build/atropos-qLruLP && dpkg-source --no-check -x /*.dsc /build/atropos-qLruLP/atropos-1.1.31+dfsg && chown -R builduser:builduser /build/atropos-qLruLP"' exec /tmp/mmdebstrap.57FaGhzse8 Reading package lists... NOTICE: 'atropos' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/atropos.git Please use: git clone https://salsa.debian.org/med-team/atropos.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3124 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20220207T030943Z bookworm/main atropos 1.1.31+dfsg-1 (dsc) [2174 B] Get:2 http://snapshot.notset.fr/archive/debian/20220207T030943Z bookworm/main atropos 1.1.31+dfsg-1 (tar) [3116 kB] Get:3 http://snapshot.notset.fr/archive/debian/20220207T030943Z bookworm/main atropos 1.1.31+dfsg-1 (diff) [5864 B] Fetched 3124 kB in 3s (1200 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'atropos_1.1.31+dfsg-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting atropos in /build/atropos-qLruLP/atropos-1.1.31+dfsg dpkg-source: info: unpacking atropos_1.1.31+dfsg.orig.tar.xz dpkg-source: info: unpacking atropos_1.1.31+dfsg-1.debian.tar.xz I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/atropos-qLruLP/atropos-1.1.31+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1643785354" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.57FaGhzse8 dpkg-buildpackage: info: source package atropos dpkg-buildpackage: info: source version 1.1.31+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/atropos-qLruLP/atropos-1.1.31+dfsg' dh_auto_clean I: pybuild base:237: python3.9 setup.py clean /usr/lib/python3/dist-packages/setuptools/dist.py:723: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( running clean removing '/build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it rm -rf .pytest_cache rm -rf atropos.egg-info rm -f atropos/align/_align.c atropos/commands/trim/_qualtrim.c atropos/io/_seqio.c make[1]: Leaving directory '/build/atropos-qLruLP/atropos-1.1.31+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:237: python3.9 setup.py config /usr/lib/python3/dist-packages/setuptools/dist.py:723: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:237: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:723: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( running build running build_py creating /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos copying atropos/__init__.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos copying atropos/_version.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos creating /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/tests copying tests/__init__.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/tests copying tests/test_adapters.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/tests copying tests/test_align.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/tests copying tests/test_atropos.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/tests copying tests/test_colorspace.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/tests copying tests/test_commands.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/tests copying tests/test_filters.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/tests copying tests/test_modifiers.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/tests copying tests/test_multicore.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/tests copying tests/test_paired.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/tests copying tests/test_qualtrim.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/tests copying tests/test_seqio.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/tests copying tests/test_trim.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/tests copying tests/test_xopen.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/tests copying tests/utils.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/tests creating /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/adapters copying atropos/adapters/__init__.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/adapters creating /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/align copying atropos/align/__init__.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/align creating /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands copying atropos/commands/__init__.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands copying atropos/commands/base.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands copying atropos/commands/cli.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands copying atropos/commands/legacy_report.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands copying atropos/commands/multicore.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands copying atropos/commands/reports.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands copying atropos/commands/stats.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands creating /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/io copying atropos/io/__init__.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/io copying atropos/io/compression.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/io copying atropos/io/progress.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/io copying atropos/io/seqio.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/io creating /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/util copying atropos/util/__init__.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/util copying atropos/util/colorspace.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/util creating /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/detect copying atropos/commands/detect/__init__.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/detect copying atropos/commands/detect/cli.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/detect copying atropos/commands/detect/reports.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/detect creating /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/error copying atropos/commands/error/__init__.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/error copying atropos/commands/error/cli.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/error copying atropos/commands/error/reports.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/error creating /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/qc copying atropos/commands/qc/__init__.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/qc copying atropos/commands/qc/cli.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/qc copying atropos/commands/qc/reports.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/qc creating /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim copying atropos/commands/trim/__init__.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim copying atropos/commands/trim/cli.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim copying atropos/commands/trim/filters.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim copying atropos/commands/trim/modifiers.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim copying atropos/commands/trim/multicore.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim copying atropos/commands/trim/qualtrim.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim copying atropos/commands/trim/reports.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim copying atropos/commands/trim/writers.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim copying atropos/adapters/sequencing_adapters.fa -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/adapters UPDATING /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/_version.py set /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/_version.py to '1.1.31' running build_ext /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/atropos-qLruLP/atropos-1.1.31+dfsg/atropos/align/_align.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/atropos-qLruLP/atropos-1.1.31+dfsg/atropos/commands/trim/_qualtrim.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/atropos-qLruLP/atropos-1.1.31+dfsg/atropos/io/_seqio.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling atropos/align/_align.pyx because it changed. Compiling atropos/commands/trim/_qualtrim.pyx because it changed. Compiling atropos/io/_seqio.pyx because it changed. [1/3] Cythonizing atropos/align/_align.pyx [2/3] Cythonizing atropos/commands/trim/_qualtrim.pyx [3/3] Cythonizing atropos/io/_seqio.pyx building 'atropos.align._align' extension creating build creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/atropos creating build/temp.linux-x86_64-3.9/atropos/align x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/atropos-qLruLP/atropos-1.1.31+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c atropos/align/_align.c -o build/temp.linux-x86_64-3.9/atropos/align/_align.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/atropos-qLruLP/atropos-1.1.31+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/atropos/align/_align.o -o /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/align/_align.cpython-39-x86_64-linux-gnu.so building 'atropos.commands.trim._qualtrim' extension creating build/temp.linux-x86_64-3.9/atropos/commands creating build/temp.linux-x86_64-3.9/atropos/commands/trim x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/atropos-qLruLP/atropos-1.1.31+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c atropos/commands/trim/_qualtrim.c -o build/temp.linux-x86_64-3.9/atropos/commands/trim/_qualtrim.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/atropos-qLruLP/atropos-1.1.31+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/atropos/commands/trim/_qualtrim.o -o /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim/_qualtrim.cpython-39-x86_64-linux-gnu.so building 'atropos.io._seqio' extension creating build/temp.linux-x86_64-3.9/atropos/io x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/atropos-qLruLP/atropos-1.1.31+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c atropos/io/_seqio.c -o build/temp.linux-x86_64-3.9/atropos/io/_seqio.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/atropos-qLruLP/atropos-1.1.31+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/atropos/io/_seqio.o -o /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/io/_seqio.cpython-39-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.9 copying and adjusting bin/atropos -> build/scripts-3.9 changing mode of build/scripts-3.9/atropos from 644 to 755 create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install --destdir=debian/atropos/ -a -O--buildsystem=pybuild I: pybuild base:237: /usr/bin/python3 setup.py install --root /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos /usr/lib/python3/dist-packages/setuptools/dist.py:723: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py UPDATING /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/_version.py set /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/_version.py to '1.1.31' running build_ext running build_scripts running install_lib creating /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr creating /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib creating /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9 creating /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages creating /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/__init__.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos creating /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/adapters copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/adapters/__init__.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/adapters copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/adapters/sequencing_adapters.fa -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/adapters creating /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/align copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/align/__init__.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/align copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/align/_align.cpython-39-x86_64-linux-gnu.so -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/align creating /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/__init__.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/base.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/cli.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/legacy_report.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/multicore.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/reports.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/stats.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands creating /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/detect copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/detect/__init__.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/detect copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/detect/cli.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/detect copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/detect/reports.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/detect creating /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/error copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/error/__init__.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/error copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/error/cli.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/error copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/error/reports.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/error creating /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/qc copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/qc/__init__.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/qc copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/qc/cli.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/qc copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/qc/reports.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/qc creating /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim/__init__.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim/cli.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim/filters.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim/modifiers.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim/multicore.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim/qualtrim.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim/reports.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim/writers.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim/_qualtrim.cpython-39-x86_64-linux-gnu.so -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim creating /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/io copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/io/__init__.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/io copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/io/compression.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/io copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/io/progress.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/io copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/io/seqio.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/io copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/io/_seqio.cpython-39-x86_64-linux-gnu.so -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/io creating /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/util copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/util/__init__.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/util copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/util/colorspace.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/util copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/atropos/_version.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos creating /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/tests/__init__.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/tests/test_adapters.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/tests/test_align.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/tests/test_atropos.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/tests/test_colorspace.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/tests/test_commands.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/tests/test_filters.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/tests/test_modifiers.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/tests/test_multicore.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/tests/test_paired.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/tests/test_qualtrim.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/tests/test_seqio.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/tests/test_trim.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/tests/test_xopen.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests copying /build/atropos-qLruLP/atropos-1.1.31+dfsg/.pybuild/cpython3_3.9/build/tests/utils.py -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/__init__.py to __init__.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/adapters/__init__.py to __init__.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/align/__init__.py to __init__.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/__init__.py to __init__.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/base.py to base.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/cli.py to cli.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/legacy_report.py to legacy_report.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/multicore.py to multicore.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/reports.py to reports.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/stats.py to stats.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/detect/__init__.py to __init__.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/detect/cli.py to cli.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/detect/reports.py to reports.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/error/__init__.py to __init__.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/error/cli.py to cli.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/error/reports.py to reports.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/qc/__init__.py to __init__.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/qc/cli.py to cli.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/qc/reports.py to reports.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim/__init__.py to __init__.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim/cli.py to cli.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim/filters.py to filters.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim/modifiers.py to modifiers.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim/multicore.py to multicore.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim/qualtrim.py to qualtrim.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim/reports.py to reports.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim/writers.py to writers.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/io/__init__.py to __init__.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/io/compression.py to compression.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/io/progress.py to progress.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/io/seqio.py to seqio.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/util/__init__.py to __init__.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/util/colorspace.py to colorspace.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/_version.py to _version.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/__init__.py to __init__.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/test_adapters.py to test_adapters.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/test_align.py to test_align.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/test_atropos.py to test_atropos.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/test_colorspace.py to test_colorspace.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/test_commands.py to test_commands.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/test_filters.py to test_filters.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/test_modifiers.py to test_modifiers.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/test_multicore.py to test_multicore.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/test_paired.py to test_paired.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/test_qualtrim.py to test_qualtrim.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/test_seqio.py to test_seqio.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/test_trim.py to test_trim.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/test_xopen.py to test_xopen.cpython-39.pyc byte-compiling /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/utils.py to utils.cpython-39.pyc running install_egg_info running egg_info creating atropos.egg-info writing atropos.egg-info/PKG-INFO writing dependency_links to atropos.egg-info/dependency_links.txt writing requirements to atropos.egg-info/requires.txt writing top-level names to atropos.egg-info/top_level.txt writing manifest file 'atropos.egg-info/SOURCES.txt' reading manifest file 'atropos.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'README.rst' warning: no files found matching 'LICENSE.txt' warning: no files found matching 'atropos/report/templates/*' adding license file 'LICENSE' writing manifest file 'atropos.egg-info/SOURCES.txt' Copying atropos.egg-info to /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos-1.1.31.egg-info Skipping SOURCES.txt running install_scripts creating /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/bin copying build/scripts-3.9/atropos -> /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/bin changing mode of /build/atropos-qLruLP/atropos-1.1.31+dfsg/debian/atropos/usr/bin/atropos to 755 debian/rules override_dh_install make[1]: Entering directory '/build/atropos-qLruLP/atropos-1.1.31+dfsg' dh_install find debian -type d -name __pycache__ | xargs rm -rf find debian -type d -name tests | xargs rm -rf find debian -type f -name .adapters -delete make[1]: Leaving directory '/build/atropos-qLruLP/atropos-1.1.31+dfsg' dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_installman -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dpkg-gencontrol: warning: package atropos: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package atropos: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild dpkg-deb: building package 'atropos-dbgsym' in '../atropos-dbgsym_1.1.31+dfsg-1_amd64.deb'. dpkg-deb: building package 'atropos' in '../atropos_1.1.31+dfsg-1_amd64.deb'. dpkg-genbuildinfo --build=any -O../atropos_1.1.31+dfsg-1_amd64.buildinfo dpkg-genchanges --build=any -O../atropos_1.1.31+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/atropos-qLruLP /tmp/atropos-1.1.31+dfsg-1b3gg_4ob I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.57FaGhzse8... I: success in 476.4270 seconds md5: atropos-dbgsym_1.1.31+dfsg-1_amd64.deb: OK md5: atropos_1.1.31+dfsg-1_amd64.deb: OK sha1: atropos-dbgsym_1.1.31+dfsg-1_amd64.deb: OK sha1: atropos_1.1.31+dfsg-1_amd64.deb: OK sha256: atropos-dbgsym_1.1.31+dfsg-1_amd64.deb: OK sha256: atropos_1.1.31+dfsg-1_amd64.deb: OK Checksums: OK