Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/a/artfastqgenerator/artfastqgenerator_0.0.20150519-4_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/artfastqgenerator-0.0.20150519-49b7okcu9/artfastqgenerator_0.0.20150519-4_all.buildinfo Get source package info: artfastqgenerator=0.0.20150519-4 Source URL: http://snapshot.notset.fr/mr/package/artfastqgenerator/0.0.20150519-4/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.118 autoconf=2.69-11.1 automake=1:1.16.2-4 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.48 bash=5.1~rc2-1 binutils=2.35.1-2 binutils-common=2.35.1-2 binutils-x86-64-linux-gnu=2.35.1-2 bsdextrautils=2.36-4 bsdutils=1:2.36-3+b2 build-essential=12.8 bzip2=1.0.8-4 ca-certificates=20200601 ca-certificates-java=20190909 coreutils=8.32-4+b1 cpp=4:10.2.0-1 cpp-10=10.2.0-17 dash=0.5.11+git20200708+dd9ef66-2 dctrl-tools=2.24-3+b1 debconf=1.5.74 debhelper=13.2.1 debianutils=4.11.2 default-jdk=2:1.11-72 default-jdk-headless=2:1.11-72 default-jre=2:1.11-72 default-jre-headless=2:1.11-72 devscripts=2.20.4 dh-autoreconf=19 dh-strip-nondeterminism=1.9.0-1 diffutils=1:3.7-3 dirmngr=2.2.20-1 dpkg=1.20.5 dpkg-dev=1.20.5 dwz=0.13-5 fakeroot=1.25.3-1 file=1:5.38-5 findutils=4.7.0+git20201010-2 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 g++=4:10.2.0-1 g++-10=10.2.0-17 gcc=4:10.2.0-1 gcc-10=10.2.0-17 gcc-10-base=10.2.0-17 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 gnupg=2.2.20-1 gnupg-l10n=2.2.20-1 gnupg-utils=2.2.20-1 gpg=2.2.20-1 gpg-agent=2.2.20-1 gpg-wks-client=2.2.20-1 gpg-wks-server=2.2.20-1 gpgconf=2.2.20-1 gpgsm=2.2.20-1 gpgv=2.2.20-1 grep=3.6-1 groff-base=1.22.4-5 gzip=1.10-2 hostname=3.23 init-system-helpers=1.58 intltool-debian=0.35.0+20060710.5 java-common=0.72 javahelper=0.77 libacl1=2.2.53-8 libarchive-zip-perl=1.68-1 libasan6=10.2.0-17 libasound2=1.2.3.2-1 libasound2-data=1.2.3.2-1 libassuan0=2.5.3-7.1 libatomic1=10.2.0-17 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-3.1 libaudit1=1:2.8.5-3.1 libavahi-client3=0.8-3 libavahi-common-data=0.8-3 libavahi-common3=0.8-3 libb-hooks-op-check-perl=0.22-1+b3 libbinutils=2.35.1-2 libblkid1=2.36-3+b2 libbrotli1=1.0.9-2+b1 libbsd0=0.10.0-1 libbz2-1.0=1.0.8-4 libc-bin=2.31-4 libc-dev-bin=2.31-4 libc6=2.31-4 libc6-dev=2.31-4 libcap-ng0=0.7.9-2.2 libcc1-0=10.2.0-17 libclass-method-modifiers-perl=2.13-1 libcom-err2=1.45.6-1 libcroco3=0.6.13-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-2 libctf0=2.35.1-2 libcups2=2.3.3-3 libdb5.3=5.3.28+dfsg1-0.6 libdbus-1-3=1.12.20-1 libdebconfclient0=0.255 libdebhelper-perl=13.2.1 libdevel-callchecker-perl=0.008-1+b2 libdpkg-perl=1.20.5 libdrm-amdgpu1=2.4.103-1 libdrm-common=2.4.103-1 libdrm-intel1=2.4.103-1 libdrm-nouveau2=2.4.103-1 libdrm-radeon1=2.4.103-1 libdrm2=2.4.103-1 libdynaloader-functions-perl=0.003-1 libedit2=3.1-20191231-1 libelf1=0.182-1 libencode-locale-perl=1.05-1 libexpat1=2.2.10-1 libfakeroot=1.25.3-1 libffi7=3.3-5 libfile-homedir-perl=1.006-1 libfile-listing-perl=6.11-1 libfile-stripnondeterminism-perl=1.9.0-1 libfile-which-perl=1.23-1 libfontconfig1=2.13.1-4.2 libfreetype6=2.10.2+dfsg-4 libgcc-10-dev=10.2.0-17 libgcc-s1=10.2.0-17 libgcrypt20=1.8.7-2 libgdbm-compat4=1.18.1-5.1 libgdbm6=1.18.1-5.1 libgif7=5.1.9-1 libgl1=1.3.2-1 libgl1-mesa-dri=20.2.2-1 libglapi-mesa=20.2.2-1 libglib2.0-0=2.66.2-1 libglvnd0=1.3.2-1 libglx-mesa0=20.2.2-1 libglx0=1.3.2-1 libgmp10=2:6.2.1+dfsg-1 libgnutls30=3.6.15-4 libgomp1=10.2.0-17 libgpg-error0=1.38-2 libgssapi-krb5-2=1.17-10 libhogweed6=3.6-2 libhtml-parser-perl=3.75-1+b1 libhtml-tagset-perl=3.20-4 libhtml-tree-perl=5.07-2 libhttp-cookies-perl=6.08-1 libhttp-date-perl=6.05-1 libhttp-message-perl=6.26-1 libhttp-negotiate-perl=6.01-1 libicu67=67.1-4 libidn2-0=2.3.0-3 libimport-into-perl=1.002005-1 libio-html-perl=1.001-1 libio-pty-perl=1:1.15-1+b1 libio-socket-ssl-perl=2.068-1 libipc-run-perl=20200505.0-1 libisl22=0.22.1-1 libitm1=10.2.0-17 libjpeg62-turbo=1:2.0.5-1.1 libk5crypto3=1.17-10 libkeyutils1=1.6.1-2 libkrb5-3=1.17-10 libkrb5support0=1.17-10 libksba8=1.4.0-2 liblcms2-2=2.9-4+b1 libldap-2.4-2=2.4.56+dfsg-1 libllvm11=1:11.0.0-5 liblsan0=10.2.0-17 liblwp-mediatypes-perl=6.04-1 liblwp-protocol-https-perl=6.09-1 liblz4-1=1.9.2-2 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.38-5 libmagic1=1:5.38-5 libmodule-runtime-perl=0.016-1 libmoo-perl=2.004000-1 libmount1=2.36-3+b2 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libncursesw6=6.2+20200918-1 libnet-http-perl=6.19-1 libnet-ssleay-perl=1.88-3+b1 libnettle8=3.6-2 libnpth0=1.6-3 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnspr4=2:4.29-1 libnss-nis=3.1-4 libnss-nisplus=1.3-4 libnss3=2:3.58-1 libp11-kit0=0.23.21-2 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libparams-classify-perl=0.015-1+b3 libpciaccess0=0.16-1 libpcre2-8-0=10.34-7 libpcre3=2:8.39-13 libpcsclite1=1.9.0-1 libperl5.32=5.32.0-5 libpipeline1=1.5.3-1 libpng16-16=1.6.37-3 libpython3-stdlib=3.8.6-1 libpython3.8-minimal=3.8.6-1 libpython3.8-stdlib=3.8.6-1 libquadmath0=10.2.0-17 libreadline8=8.1~rc2-2 librole-tiny-perl=2.001004-1 libsasl2-2=2.1.27+dfsg-2 libsasl2-modules-db=2.1.27+dfsg-2 libseccomp2=2.5.0-3 libselinux1=3.1-2+b1 libsemanage-common=3.1-1 libsemanage1=3.1-1+b1 libsensors-config=1:3.6.0-2 libsensors5=1:3.6.0-2 libsepol1=3.1-1 libsigsegv2=2.12-2 libsmartcols1=2.36-3+b2 libsqlite3-0=3.33.0-1 libssl1.1=1.1.1h-1 libstdc++-10-dev=10.2.0-17 libstdc++6=10.2.0-17 libstrictures-perl=2.000006-1 libsub-override-perl=0.09-2 libsub-quote-perl=2.006006-1 libsystemd0=246.6-2 libtasn1-6=4.16.0-2 libtimedate-perl=2.3300-1 libtinfo6=6.2+20200918-1 libtirpc-common=1.2.6-3 libtirpc-dev=1.2.6-3 libtirpc3=1.2.6-3 libtool=2.4.6-14 libtry-tiny-perl=0.30-1 libtsan0=10.2.0-17 libubsan1=10.2.0-17 libuchardet0=0.0.7-1 libudev1=246.6-2 libunistring2=0.9.10-4 liburi-perl=5.05-1 libuuid1=2.36-3+b2 libvulkan1=1.2.154.1-1 libwww-perl=6.49-1 libwww-robotrules-perl=6.02-1 libx11-6=2:1.6.12-1 libx11-data=2:1.6.12-1 libx11-xcb1=2:1.6.12-1 libxau6=1:1.0.8-1+b2 libxcb-dri2-0=1.14-2 libxcb-dri3-0=1.14-2 libxcb-glx0=1.14-2 libxcb-present0=1.14-2 libxcb-sync1=1.14-2 libxcb-xfixes0=1.14-2 libxcb1=1.14-2 libxdamage1=1:1.1.5-2 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.3-1+b2 libxfixes3=1:5.0.3-2 libxi6=2:1.7.10-1 libxml2=2.9.10+dfsg-6.2 libxrender1=1:0.9.10-1 libxshmfence1=1.3-1 libxtst6=2:1.2.3-1 libxxf86vm1=1:1.1.4-1+b2 libz3-4=4.8.9-1 libzstd1=1.4.5+dfsg-4 linux-libc-dev=5.9.6-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 mailcap=3.67 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 media-types=1.0.1 mime-support=3.66 ncurses-base=6.2+20200918-1 ncurses-bin=6.2+20200918-1 netbase=6.2 openjdk-11-jdk=11.0.9.1+1-1 openjdk-11-jdk-headless=11.0.9.1+1-1 openjdk-11-jre=11.0.9.1+1-1 openjdk-11-jre-headless=11.0.9.1+1-1 openssl=1.1.1h-1 passwd=1:4.8.1-1 patch=2.7.6-6 patchutils=0.4.2-1 perl=5.32.0-5 perl-base=5.32.0-5 perl-modules-5.32=5.32.0-5 perl-openssl-defaults=5 pinentry-curses=1.1.0-4 po-debconf=1.0.21 python3=3.8.6-1 python3-minimal=3.8.6-1 python3.8=3.8.6-1 python3.8-minimal=3.8.6-1 readline-common=8.1~rc2-2 sed=4.7-1 sensible-utils=0.0.12+nmu1 sysvinit-utils=2.96-5 tar=1.30+dfsg-7 ucf=3.0043 util-linux=2.36-3+b2 wdiff=1.2.2-2+b1 x11-common=1:7.7+21 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201116T150139Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20201116T092020Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d artfastqgenerator=0.0.20150519-4 && mkdir -p /build/artfastqgenerator-rTVtGZ && dpkg-source --no-check -x /*.dsc /build/artfastqgenerator-rTVtGZ/artfastqgenerator-0.0.20150519 && chown -R builduser:builduser /build/artfastqgenerator-rTVtGZ" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/artfastqgenerator-rTVtGZ/artfastqgenerator-0.0.20150519 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1605531402" dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/artfastqgenerator-rTVtGZ /tmp/artfastqgenerator-0.0.20150519-49b7okcu9 bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20201116T092020Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.n4LsEVnywR as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.n4LsEVnywR Reading package lists... Building dependency tree... util-linux is already the newest version (2.36-3+b2). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20201116T092020Z unstable/main amd64 libfakeroot amd64 1.25.3-1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20201116T092020Z unstable/main amd64 fakeroot amd64 1.25.3-1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1096 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4695 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1_amd64.deb ... Unpacking fakeroot (1.25.3-1) ... Setting up libfakeroot:amd64 (1.25.3-1) ... Setting up fakeroot (1.25.3-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-4) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201116T150139Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20201116T092020Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.n4LsEVnywR Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:2 http://snapshot.notset.fr/archive/debian/20201116T150139Z unstable InRelease [146 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20201116T092020Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20201116T150139Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20201116T150139Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20201116T150139Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20201116T150139Z unstable/main amd64 Packages [11.5 MB] Fetched 34.3 MB in 29s (1182 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.n4LsEVnywR I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d artfastqgenerator=0.0.20150519-4 && mkdir -p /build/artfastqgenerator-rTVtGZ && dpkg-source --no-check -x /*.dsc /build/artfastqgenerator-rTVtGZ/artfastqgenerator-0.0.20150519 && chown -R builduser:builduser /build/artfastqgenerator-rTVtGZ"' exec /tmp/mmdebstrap.n4LsEVnywR Reading package lists... NOTICE: 'artfastqgenerator' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/artfastqgenerator.git Please use: git clone https://salsa.debian.org/med-team/artfastqgenerator.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1183 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main artfastqgenerator 0.0.20150519-4 (dsc) [2304 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main artfastqgenerator 0.0.20150519-4 (tar) [1175 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main artfastqgenerator 0.0.20150519-4 (diff) [6168 B] Fetched 1183 kB in 1s (1193 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'artfastqgenerator_0.0.20150519-4.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting artfastqgenerator in /build/artfastqgenerator-rTVtGZ/artfastqgenerator-0.0.20150519 dpkg-source: info: unpacking artfastqgenerator_0.0.20150519.orig.tar.xz dpkg-source: info: unpacking artfastqgenerator_0.0.20150519-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying adapt_doc.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/artfastqgenerator-rTVtGZ/artfastqgenerator-0.0.20150519 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1605531402" dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.n4LsEVnywR dpkg-buildpackage: info: source package artfastqgenerator dpkg-buildpackage: info: source version 0.0.20150519-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . debian/rules clean dh clean --with javahelper jh_clean dh_clean debian/rules binary-indep dh binary-indep --with javahelper dh_update_autotools_config -i dh_autoreconf -i jh_linkjars -i debian/rules override_dh_auto_build make[1]: Entering directory '/build/artfastqgenerator-rTVtGZ/artfastqgenerator-0.0.20150519' javac -source 1.7 -target 1.7 artificialFastqGenerator/*.java && \ jar -cmf META-INF/MANIFEST.MF artfastqgenerator.jar artificialFastqGenerator/*.class warning: [options] bootstrap class path not set in conjunction with -source 7 1 warning make[1]: Leaving directory '/build/artfastqgenerator-rTVtGZ/artfastqgenerator-0.0.20150519' debian/rules override_dh_auto_test make[1]: Entering directory '/build/artfastqgenerator-rTVtGZ/artfastqgenerator-0.0.20150519' java -jar artfastqgenerator.jar -R miniReference.fasta -O C1 -S ">1" -E ">" -URQS true -SE true -F1 test1.fastq -F2 test2.fastq ArtificialFastqGenerator v1.0.0 Copyright (C) 2012 The Institute of Cancer Research (ICR). This Program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version. Additional permissions under GNU GPL versions 3 section 7: This Program is distributed as a service to the research community and is experimental in nature and may have hazardous properties. The Program is distributed WITHOUT ANY WARRANTY, express or implied. In particular all warranties as to SATISFACTORY QUALITY or FITNESS FOR A PARTICULAR PURPOSE are excluded. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, see . Oct 07, 2021 9:48:36 AM artificialFastqGenerator.ArtificialFastqGenerator generateArtificialFastqs INFO: Found the start sequence ID str >1 in >1 dna:chromosome chromosome:GRCh37:1:1:249250621:1 Oct 07, 2021 9:48:36 AM artificialFastqGenerator.ArtificialFastqGenerator generateArtificialFastqs INFO: Read generation begun. Oct 07, 2021 9:48:36 AM artificialFastqGenerator.CoverageStatisticsCalculator logCoverageStatsHeader INFO: ALL_SO_FAR_NUM,ALL_AV_COV,ALL_MIN_COV,ALL_MAX_COV,ACGT_NUM,ACGT_AV_COV,ACGT_MIN_COV,ACGT_MAX_COV Oct 07, 2021 9:48:38 AM artificialFastqGenerator.CoverageStatisticsCalculator logRegionStats INFO: 10000,26.429,1,43,9880,26.636943319838057,4,43 Oct 07, 2021 9:48:39 AM artificialFastqGenerator.CoverageStatisticsCalculator logRegionStats INFO: 20000,31.3463,5,53,10000,31.3463,5,53 Oct 07, 2021 9:48:40 AM artificialFastqGenerator.CoverageStatisticsCalculator logRegionStats INFO: 30000,33.1875,19,53,10000,33.1875,19,53 Oct 07, 2021 9:48:40 AM artificialFastqGenerator.CoverageStatisticsCalculator logRegionStats INFO: 40000,30.7901,9,58,10000,30.7901,9,58 Oct 07, 2021 9:48:41 AM artificialFastqGenerator.CoverageStatisticsCalculator logRegionStats INFO: 50000,31.4937,15,50,10000,31.4937,15,50 Oct 07, 2021 9:48:42 AM artificialFastqGenerator.CoverageStatisticsCalculator logRegionStats INFO: 60000,29.0908,3,57,10000,29.0908,3,57 Oct 07, 2021 9:48:42 AM artificialFastqGenerator.CoverageStatisticsCalculator logRegionStats INFO: 70000,31.2068,16,54,10000,31.2068,16,54 Oct 07, 2021 9:48:43 AM artificialFastqGenerator.CoverageStatisticsCalculator logRegionStats INFO: 80000,29.3997,11,49,10000,29.3997,11,49 Oct 07, 2021 9:48:43 AM artificialFastqGenerator.CoverageStatisticsCalculator logRegionStats INFO: 90000,34.4393,12,56,10000,34.4393,12,56 Oct 07, 2021 9:48:43 AM artificialFastqGenerator.ArtificialFastqGenerator generateArtificialFastqs INFO: Found the end sequence identifier > in >2 dna:chromosome chromosome:GRCh37:2:1:243199373:1 Oct 07, 2021 9:48:43 AM artificialFastqGenerator.ArtificialFastqGenerator generateArtificialFastqs INFO: Further reads generated only for nucleobases already in memory. Oct 07, 2021 9:48:43 AM artificialFastqGenerator.CoverageStatisticsCalculator logRegionStats INFO: 100000,31.644,3,51,9960,31.747389558232932,4,51 Oct 07, 2021 9:48:43 AM artificialFastqGenerator.CoverageStatisticsCalculator logRegionStats INFO: 100080,4.3,0,7,0,0.0,0,0 Oct 07, 2021 9:48:43 AM artificialFastqGenerator.CoverageStatisticsCalculator logOverallStats INFO: Oct 07, 2021 9:48:43 AM artificialFastqGenerator.CoverageStatisticsCalculator logOverallStats INFO: OVERALL STATISTICS: Oct 07, 2021 9:48:43 AM artificialFastqGenerator.CoverageStatisticsCalculator logOverallStats INFO: # nucleobases processed=100080 Oct 07, 2021 9:48:43 AM artificialFastqGenerator.CoverageStatisticsCalculator logOverallStats INFO: Average coverage=30.881454836131095 Oct 07, 2021 9:48:43 AM artificialFastqGenerator.CoverageStatisticsCalculator logOverallStats INFO: Minimum coverage=0 Oct 07, 2021 9:48:43 AM artificialFastqGenerator.CoverageStatisticsCalculator logOverallStats INFO: Maximum coverage=58 Oct 07, 2021 9:48:43 AM artificialFastqGenerator.CoverageStatisticsCalculator logOverallStats INFO: # ACGTs processed=99840 Oct 07, 2021 9:48:43 AM artificialFastqGenerator.CoverageStatisticsCalculator logOverallStats INFO: ACGT average coverage=30.938691907051282 Oct 07, 2021 9:48:43 AM artificialFastqGenerator.CoverageStatisticsCalculator logOverallStats INFO: ACGT minimum coverage=3 Oct 07, 2021 9:48:43 AM artificialFastqGenerator.CoverageStatisticsCalculator logOverallStats INFO: ACGT maximum coverage=58 Oct 07, 2021 9:48:43 AM artificialFastqGenerator.NucleobaseAndReadFactory logOverallErrorStats INFO: # reads=40666 Oct 07, 2021 9:48:43 AM artificialFastqGenerator.NucleobaseAndReadFactory logOverallErrorStats INFO: # nucleobase calls=3090616 Oct 07, 2021 9:48:43 AM artificialFastqGenerator.NucleobaseAndReadFactory logOverallErrorStats INFO: # ACGT nucleobase calls=3088919 Oct 07, 2021 9:48:43 AM artificialFastqGenerator.NucleobaseAndReadFactory logOverallErrorStats INFO: # ACGT call errors=178676 rm C1.1.fastq C1.2.fastq make[1]: Leaving directory '/build/artfastqgenerator-rTVtGZ/artfastqgenerator-0.0.20150519' create-stamp debian/debhelper-build-stamp dh_testroot -i dh_prep -i dh_install -i jh_installjavadoc -i dh_installdocs -i dh_installchangelogs -i dh_installman -i dh_perl -i dh_link -i jh_installlibs -i jh_classpath -i jh_manifest -i jh_exec -i jh_depends -i dh_strip_nondeterminism -i dh_compress -i dh_fixperms -i dh_missing -i dh_installdeb -i dh_gencontrol -i dh_md5sums -i dh_builddeb -i dpkg-deb: building package 'artfastqgenerator' in '../artfastqgenerator_0.0.20150519-4_all.deb'. dpkg-deb: building package 'artfastqgenerator-doc' in '../artfastqgenerator-doc_0.0.20150519-4_all.deb'. dpkg-deb: building package 'artfastqgenerator-examples' in '../artfastqgenerator-examples_0.0.20150519-4_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../artfastqgenerator_0.0.20150519-4_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/artfastqgenerator-rTVtGZ /tmp/artfastqgenerator-0.0.20150519-49b7okcu9 I: cleaning package lists and apt cache... W: deleting files in /tmp: hsperfdata_root W: deleting files in /tmp: hsperfdata_builduser I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.n4LsEVnywR... I: success in 805.3042 seconds md5: artfastqgenerator-doc_0.0.20150519-4_all.deb: OK md5: artfastqgenerator-examples_0.0.20150519-4_all.deb: OK md5: artfastqgenerator_0.0.20150519-4_all.deb: OK sha1: artfastqgenerator-doc_0.0.20150519-4_all.deb: OK sha1: artfastqgenerator-examples_0.0.20150519-4_all.deb: OK sha1: artfastqgenerator_0.0.20150519-4_all.deb: OK sha256: artfastqgenerator-doc_0.0.20150519-4_all.deb: OK sha256: artfastqgenerator-examples_0.0.20150519-4_all.deb: OK sha256: artfastqgenerator_0.0.20150519-4_all.deb: OK Checksums: OK