Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/a/apophenia/apophenia_1.0+ds-8_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/apophenia-1.0+ds-8afaal84e/apophenia_1.0+ds-8_all.buildinfo Get source package info: apophenia=1.0+ds-8 Source URL: http://snapshot.notset.fr/mr/package/apophenia/1.0+ds-8/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-11 autoconf-archive=20180313-1 automake=1:1.16.1-4 autopoint=0.19.8.1-9 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.46 bash=5.0-4 bc=1.07.1-2+b2 binutils=2.32.51.20190813-1 binutils-common=2.32.51.20190813-1 binutils-x86-64-linux-gnu=2.32.51.20190813-1 bison=2:3.4.1+dfsg-4 bsdmainutils=11.1.2+b1 bsdutils=1:2.34-0.1 build-essential=12.6 bzip2=1.0.6-9.2 coreutils=8.30-3+b1 cpp=4:8.3.0-1 cpp-8=8.3.0-19 dash=0.5.10.2-6 debconf=1.5.73 debhelper=12.4 debianutils=4.8.6.3 default-libmysqlclient-dev=1.0.5 dh-autoreconf=19 dh-strip-nondeterminism=1.5.0-1 diffutils=1:3.7-3 doxygen=1.8.13-10 dpkg=1.19.7 dpkg-dev=1.19.7 dwz=0.13-1 fdisk=2.34-0.1 file=1:5.37-5 findutils=4.6.0+git+20190510-2 fontconfig=2.13.1-2 fontconfig-config=2.13.1-2 fonts-dejavu-core=2.37-1 fonts-lmodern=2.004.5-6 fonts-urw-base35=20170801.1-2 g++=4:8.3.0-1 g++-8=8.3.0-19 gcc=4:8.3.0-1 gcc-8=8.3.0-19 gcc-8-base=8.3.0-19 gcc-9-base=9.2.1-1 gettext=0.19.8.1-9 gettext-base=0.19.8.1-9 ghostscript=9.27~dfsg-3.1 gnulib=20140202+stable-4 gperf=3.1-1 graphviz=2.40.1-7 grep=3.3-1 groff-base=1.22.4-3 gzip=1.9-3 help2man=1.47.11 hostname=3.21 init-system-helpers=1.57 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-4 libann0=1.1.2+doc-7 libarchive-zip-perl=1.64-1 libasan5=9.2.1-1 libatomic1=9.2.1-1 libattr1=1:2.4.48-4 libaudit-common=1:2.8.5-2 libaudit1=1:2.8.5-2 libavahi-client3=0.7-4+b1 libavahi-common-data=0.7-4+b1 libavahi-common3=0.7-4+b1 libbinutils=2.32.51.20190813-1 libblkid1=2.34-0.1 libbrotli1=1.0.7-2 libbsd0=0.10.0-1 libbz2-1.0=1.0.6-9.2 libc-bin=2.28-10 libc-dev-bin=2.28-10 libc6=2.28-10 libc6-dev=2.28-10 libcairo2=1.16.0-4 libcap-ng0=0.7.9-2 libcc1-0=9.2.1-1 libcdt5=2.40.1-7 libcgraph6=2.40.1-7 libclang1-6.0=1:6.0.1-11 libcom-err2=1.45.3-4 libcroco3=0.6.13-1 libcups2=2.2.10-6 libcupsimage2=2.2.10-6 libdatrie1=0.2.12-2 libdb5.3=5.3.28+dfsg1-0.6 libdbus-1-3=1.12.16-1 libdebconfclient0=0.249 libdpkg-perl=1.19.7 libedit2=3.1-20190324-1 libelf1=0.176-1.1 libevent-2.1-6=2.1.8-stable-4 libexpat1=2.2.7-1 libfdisk1=2.34-0.1 libffi6=3.2.1-9 libfile-stripnondeterminism-perl=1.5.0-1 libfontconfig1=2.13.1-2 libfreetype6=2.9.1-4 libfribidi0=1.0.5-3.1 libgcc-8-dev=8.3.0-19 libgcc1=1:9.2.1-1 libgcrypt20=1.8.4-5 libgd3=2.2.5-5.2 libgdbm-compat4=1.18.1-4+b1 libgdbm6=1.18.1-4+b1 libglib2.0-0=2.60.6-2 libgmp-dev=2:6.1.2+dfsg-4 libgmp10=2:6.1.2+dfsg-4 libgmpxx4ldbl=2:6.1.2+dfsg-4 libgnutls-dane0=3.6.9-4 libgnutls-openssl27=3.6.9-4 libgnutls28-dev=3.6.9-4 libgnutls30=3.6.9-4 libgnutlsxx28=3.6.9-4 libgomp1=9.2.1-1 libgpg-error0=1.36-7 libgraphite2-3=1.3.13-7 libgs9=9.27~dfsg-3.1 libgs9-common=9.27~dfsg-3.1 libgsl-dev=2.5+dfsg-6 libgsl23=2.5+dfsg-6 libgslcblas0=2.5+dfsg-6 libgssapi-krb5-2=1.17-6 libgts-0.7-5=0.7.6+darcs121130-4 libgvc6=2.40.1-7 libgvpr2=2.40.1-7 libharfbuzz-icu0=2.6.0-1 libharfbuzz0b=2.6.0-1 libhogweed4=3.4.1-1 libice6=2:1.0.9-2 libicu63=63.2-2 libidn11=1.33-2.2 libidn2-0=2.2.0-1 libidn2-dev=2.2.0-1 libijs-0.35=0.35-14 libisl19=0.20-2 libitm1=9.2.1-1 libjbig0=2.1-3.1+b2 libjbig2dec0=0.16-1 libjpeg62-turbo=1:1.5.2-2+b1 libk5crypto3=1.17-6 libkeyutils1=1.6-6 libkpathsea6=2019.20190605.51237-2 libkrb5-3=1.17-6 libkrb5support0=1.17-6 liblab-gamut1=2.40.1-7 liblcms2-2=2.9-3 libllvm6.0=1:6.0.1-11 liblocale-gettext-perl=1.07-3+b4 liblsan0=9.2.1-1 libltdl7=2.4.6-10 liblz4-1=1.8.3-1 liblzma5=5.2.4-1 libmagic-mgc=1:5.37-5 libmagic1=1:5.37-5 libmariadb-dev=1:10.3.17-1 libmariadb-dev-compat=1:10.3.17-1 libmariadb3=1:10.3.17-1 libmount1=2.34-0.1 libmpc3=1.1.0-1 libmpfr6=4.0.2-1 libmpx2=8.3.0-19 libncurses6=6.1+20190803-1 libncursesw6=6.1+20190803-1 libnettle6=3.4.1-1 libopenjp2-7=2.3.0-2 libp11-kit-dev=0.23.16.1-2 libp11-kit0=0.23.16.1-2 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpango-1.0-0=1.42.4-7 libpangocairo-1.0-0=1.42.4-7 libpangoft2-1.0-0=1.42.4-7 libpaper-utils=1.1.28 libpaper1=1.1.28 libpathplan4=2.40.1-7 libpcre2-8-0=10.32-5+b1 libpcre3=2:8.39-12+b1 libperl5.28=5.28.1-6 libpipeline1=1.5.1-2 libpixman-1-0=0.36.0-1 libpng16-16=1.6.37-1 libpotrace0=1.15-1 libptexenc1=2019.20190605.51237-2 libquadmath0=9.2.1-1 libreadline8=8.0-2 libseccomp2=2.4.1-2 libselinux1=2.9-2+b2 libsigsegv2=2.12-2 libsm6=2:1.2.3-1 libsmartcols1=2.34-0.1 libsqlite3-0=3.29.0-2 libsqlite3-dev=3.29.0-2 libssl1.1=1.1.1c-1 libstdc++-8-dev=8.3.0-19 libstdc++6=9.2.1-1 libsub-override-perl=0.09-2 libsynctex2=2019.20190605.51237-2 libsystemd0=241-7 libtasn1-6=4.14-2 libtasn1-6-dev=4.14-2 libteckit0=2.5.8+ds2-5 libtexlua53=2019.20190605.51237-2 libtexluajit2=2019.20190605.51237-2 libtext-unidecode-perl=1.30-1 libthai-data=0.1.28-2 libthai0=0.1.28-2 libtiff5=4.0.10+git190814-1 libtinfo6=6.1+20190803-1 libtool=2.4.6-10 libtsan0=9.2.1-1 libubsan1=9.2.1-1 libuchardet0=0.0.6-3 libudev1=241-7 libunbound8=1.9.0-2 libunistring2=0.9.10-2 libuuid1=2.34-0.1 libwebp6=0.6.1-2 libwoff1=1.0.2-1 libx11-6=2:1.6.7-1 libx11-data=2:1.6.7-1 libxapian30=1.4.11-1 libxau6=1:1.0.8-1+b2 libxaw7=2:1.0.13-1+b2 libxcb-render0=1.13.1-2 libxcb-shm0=1.13.1-2 libxcb1=1.13.1-2 libxdmcp6=1:1.1.2-3 libxdot4=2.40.1-7 libxext6=2:1.3.3-1+b2 libxi6=2:1.7.9-1 libxml-libxml-perl=2.0134+dfsg-1 libxml-namespacesupport-perl=1.12-1 libxml-sax-base-perl=1.09-1 libxml-sax-perl=1.02+dfsg-1 libxml2=2.9.4+dfsg1-7+b3 libxmu6=2:1.1.2-2+b3 libxpm4=1:3.5.12-1 libxrender1=1:0.9.10-1 libxt6=1:1.1.5-1+b3 libxxhash0=0.7.0-2 libzstd1=1.3.8+dfsg-3 libzzip-0-13=0.13.62-3.2 linux-libc-dev=5.2.7-1 login=1:4.7-2 lsb-base=11.1.0 m4=1.4.18-2 make=4.2.1-1.2 man-db=2.8.6.1-1 mariadb-common=1:10.3.17-1 mawk=1.3.3-17+b3 mysql-common=5.8+1.0.5 ncurses-base=6.1+20190803-1 ncurses-bin=6.1+20190803-1 nettle-dev=3.4.1-1 patch=2.7.6-6 perl=5.28.1-6 perl-base=5.28.1-6 perl-modules-5.28=5.28.1-6 pkg-config=0.29-6 po-debconf=1.0.21 poppler-data=0.4.9-2 rdfind=1.4.1-1+b1 readline-common=8.0-2 sed=4.7-1 sensible-utils=0.0.12 sqlite3=3.29.0-2 symlinks=1.4-3+b1 sysvinit-utils=2.95-5 t1utils=1.41-3 tar=1.30+dfsg-6+b1 tex-common=6.12 texinfo=6.6.0.dfsg.1-2 texlive-base=2019.20190710-1 texlive-binaries=2019.20190605.51237-2 texlive-fonts-recommended=2019.20190710-1 texlive-latex-base=2019.20190710-1 texlive-latex-recommended=2019.20190710-1 ucf=3.0038+nmu1 util-linux=2.34-0.1 x11-common=1:7.7+19 xdg-utils=1.1.3-1 xz-utils=5.2.4-1 zlib1g=1:1.2.11.dfsg-1+b1 zlib1g-dev=1:1.2.11.dfsg-1+b1 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20190818T214132Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20190814T155737Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d apophenia=1.0+ds-8 && mkdir -p /build/apophenia-J78VSG && dpkg-source --no-check -x /*.dsc /build/apophenia-J78VSG/apophenia-1.0+ds && chown -R builduser:builduser /build/apophenia-J78VSG" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/apophenia-J78VSG/apophenia-1.0+ds && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1565968810" dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/apophenia-J78VSG /tmp/apophenia-1.0+ds-8afaal84e bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20190814T155737Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.KQYwGyZLVr as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.KQYwGyZLVr Reading package lists... Building dependency tree... util-linux is already the newest version (2.34-0.1). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 132 kB of archives. After this operation, 373 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20190814T155737Z unstable/main amd64 libfakeroot amd64 1.23-1 [45.9 kB] Get:2 http://snapshot.notset.fr/archive/debian/20190814T155737Z unstable/main amd64 fakeroot amd64 1.23-1 [85.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 132 kB in 0s (836 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4460 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.23-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.23-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.23-1_amd64.deb ... Unpacking fakeroot (1.23-1) ... Setting up libfakeroot:amd64 (1.23-1) ... Setting up fakeroot (1.23-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.28-10) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20190818T214132Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20190814T155737Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.KQYwGyZLVr Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:2 http://snapshot.notset.fr/archive/debian/20190818T214132Z unstable InRelease [149 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20190814T155737Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20190818T214132Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20190818T214132Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20190818T214132Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20190818T214132Z unstable/main amd64 Packages [11.3 MB] Fetched 34.0 MB in 29s (1182 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.KQYwGyZLVr I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d apophenia=1.0+ds-8 && mkdir -p /build/apophenia-J78VSG && dpkg-source --no-check -x /*.dsc /build/apophenia-J78VSG/apophenia-1.0+ds && chown -R builduser:builduser /build/apophenia-J78VSG"' exec /tmp/mmdebstrap.KQYwGyZLVr Reading package lists... NOTICE: 'apophenia' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/apophenia.git Please use: git clone https://salsa.debian.org/science-team/apophenia.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 543 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main apophenia 1.0+ds-8 (dsc) [3115 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main apophenia 1.0+ds-8 (tar) [526 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main apophenia 1.0+ds-8 (diff) [13.2 kB] Fetched 543 kB in 0s (1130 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'apophenia_1.0+ds-8.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting apophenia in /build/apophenia-J78VSG/apophenia-1.0+ds dpkg-source: info: unpacking apophenia_1.0+ds.orig.tar.gz dpkg-source: info: unpacking apophenia_1.0+ds-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying upstream-fix-implicit-model-ols_log_likelihood.patch dpkg-source: info: applying upstream-mysql-8.0.patch dpkg-source: info: applying upstream-bug-793998-tests_distribution_tests-2.patch dpkg-source: info: applying upstream-fix-typo.patch dpkg-source: info: applying upstream-enhancement-eg_test_updating.patch dpkg-source: info: applying upstream-correction-spelling-error-in-source.patch dpkg-source: info: applying debianization.patch dpkg-source: info: applying debianization-help2man.patch dpkg-source: info: applying debianization-documentation.patch dpkg-source: info: applying debianization-bug-597187_757967_841636-mysql_config.patch dpkg-source: info: applying debianization-adhoc.patch dpkg-source: info: applying debianization-bug-gcc9-XXX.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/apophenia-J78VSG/apophenia-1.0+ds && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1565968810" dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.KQYwGyZLVr dpkg-buildpackage: info: source package apophenia dpkg-buildpackage: info: source version 1.0+ds-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Jerome Benoit dpkg-source --before-build . fakeroot debian/rules clean dh clean --builddirectory=_build dh_auto_clean -O--builddirectory=_build dh_autoreconf_clean -O--builddirectory=_build dh_clean -O--builddirectory=_build debian/rules build-indep dh build-indep --builddirectory=_build dh_update_autotools_config -i -O--builddirectory=_build dh_autoreconf -i -O--builddirectory=_build aclocal: warning: couldn't open directory 'm4': No such file or directory libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'build-aux'. libtoolize: copying file 'build-aux/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:19: installing 'build-aux/compile' configure.ac:19: installing 'build-aux/config.guess' configure.ac:19: installing 'build-aux/config.sub' configure.ac:12: installing 'build-aux/install-sh' configure.ac:12: installing 'build-aux/missing' Makefile.am: installing 'build-aux/depcomp' cmd/Makefile.am:27: warning: '%'-style pattern rules are a GNU make extension docs/Makefile.am:84: warning: '%'-style pattern rules are a GNU make extension automake: warning: source file '$(top_builddir)/eg/apop_map_row.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/apop_map_row' automake: warning: possible forward-incompatibility. automake: At least a source file is in a subdirectory, but the 'subdir-objects' automake: automake option hasn't been enabled. For now, the corresponding output automake: object file(s) will be placed in the top-level directory. However, automake: this behaviour will change in future Automake versions: they will automake: unconditionally cause object files to be placed in the same subdirectory automake: of the corresponding sources. automake: You are advised to start using 'subdir-objects' option throughout your automake: project, to avoid future incompatibilities. automake: warning: source file '$(top_builddir)/eg/binning.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/binning' automake: warning: source file '$(top_builddir)/eg/boot_clt.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/boot_clt' automake: warning: source file '$(top_builddir)/eg/cross_models.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:3: while processing program '$(top_builddir)/eg/cross_models' automake: warning: source file '$(top_builddir)/eg/data_fill.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/data_fill' automake: warning: source file '$(top_builddir)/eg/db_fns.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/db_fns' automake: warning: source file '$(top_builddir)/eg/dconstrain.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:3: while processing program '$(top_builddir)/eg/dconstrain' automake: warning: source file '$(top_builddir)/eg/dot_products.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/dot_products' automake: warning: source file '$(top_builddir)/eg/draw_to_db.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/draw_to_db' automake: warning: source file '$(top_builddir)/eg/entropy_model.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:3: while processing program '$(top_builddir)/eg/entropy_model' automake: warning: source file '$(top_builddir)/eg/entropy_vector.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/entropy_vector' automake: warning: source file '$(top_builddir)/eg/f_test.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:3: while processing program '$(top_builddir)/eg/f_test' automake: warning: source file '$(top_builddir)/eg/fake_logit.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/fake_logit' automake: warning: source file '$(top_builddir)/eg/fix_params.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:3: while processing program '$(top_builddir)/eg/fix_params' automake: warning: source file '$(top_builddir)/eg/hills2.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:3: while processing program '$(top_builddir)/eg/hills2' automake: warning: source file '$(top_builddir)/eg/iv.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/iv' automake: warning: source file '$(top_builddir)/eg/jack.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:3: while processing program '$(top_builddir)/eg/jack' automake: warning: source file '$(top_builddir)/eg/jacobian.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:3: while processing program '$(top_builddir)/eg/jacobian' automake: warning: source file '$(top_builddir)/eg/ks_tests.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/ks_tests' automake: warning: source file '$(top_builddir)/eg/logit.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/logit' automake: warning: source file '$(top_builddir)/eg/ml_imputation.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:3: while processing program '$(top_builddir)/eg/ml_imputation' automake: warning: source file '$(top_builddir)/eg/normalization_demo.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/normalization_demo' automake: warning: source file '$(top_builddir)/eg/ols.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/ols' automake: warning: source file '$(top_builddir)/eg/ols_oneliner.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/ols_oneliner' automake: warning: source file '$(top_builddir)/eg/parameterization.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/parameterization' automake: warning: source file '$(top_builddir)/eg/pmf_test.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:3: while processing program '$(top_builddir)/eg/pmf_test' automake: warning: source file '$(top_builddir)/eg/simple_subsets.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/simple_subsets' automake: warning: source file '$(top_builddir)/eg/some_cdfs.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:3: while processing program '$(top_builddir)/eg/some_cdfs' automake: warning: source file '$(top_builddir)/eg/t_test_by_rows.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/t_test_by_rows' automake: warning: source file '$(top_builddir)/eg/test_distances.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/test_distances' automake: warning: source file '$(top_builddir)/eg/test_fisher.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/test_fisher' automake: warning: source file '$(top_builddir)/eg/test_harmonic.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/test_harmonic' automake: warning: source file '$(top_builddir)/eg/test_kl_divergence.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:3: while processing program '$(top_builddir)/eg/test_kl_divergence' automake: warning: source file '$(top_builddir)/eg/test_pruning.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/test_pruning' automake: warning: source file '$(top_builddir)/eg/test_ranks.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:3: while processing program '$(top_builddir)/eg/test_ranks' automake: warning: source file '$(top_builddir)/eg/test_regex.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/test_regex' automake: warning: source file '$(top_builddir)/eg/test_updating.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:3: while processing program '$(top_builddir)/eg/test_updating' automake: warning: source file '$(top_builddir)/eg/transform.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:3: while processing program '$(top_builddir)/eg/transform' parallel-tests: installing 'build-aux/test-driver' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/apophenia-J78VSG/apophenia-1.0+ds' dh_auto_configure -- --enable-maintainer-mode cd _build && ../configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-maintainer-mode checking whether make supports nested variables... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether to enable maintainer-specific portions of Makefiles... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking if LD -Wl,--version-script works... yes checking for help2man... /usr/bin/help2man checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) none checking for gcc option to accept ISO C99... none needed checking whether gcc is Clang... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking whether more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking for gcc option to support OpenMP... -fopenmp checking for cos in -lm... yes checking for gsl-config... /usr/bin/gsl-config checking for GSL - version >= 1.12.0... yes checking for mysql_config... /usr/bin/mysql_config checking for SQLite3 library >= 3.0.0... yes checking for size_t... yes checking for working alloca.h... yes checking for alloca... yes checking for ANSI C header files... (cached) yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking for inttypes.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdint.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking wchar.h usability... yes checking wchar.h presence... yes checking for wchar.h... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... (cached) yes checking whether struct tm is in sys/time.h or time.h... time.h checking for ptrdiff_t... yes checking for __attribute__... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking for working strtod... yes checking for floor... no checking for memset... yes checking for pow... no checking for regcomp... yes checking for sqrt... no checking for strcasecmp... yes checking for asprintf... yes checking for bc... /usr/bin/bc checking for sqlite3... /usr/bin/sqlite3 checking whether to run extended tests... no dpkg-parsechangelog: error: cannot open file debian/changelog: No such file or directory checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating apophenia.pc config.status: creating apop.h config.status: creating Makefile config.status: creating transform/Makefile config.status: creating model/Makefile config.status: creating cmd/Makefile config.status: creating tests/Makefile config.status: creating docs/doxygen.conf config.status: creating docs/Makefile config.status: creating eg/Makefile config.status: creating tests/utilities_test config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands make[1]: Leaving directory '/build/apophenia-J78VSG/apophenia-1.0+ds' debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/apophenia-J78VSG/apophenia-1.0+ds' /usr/bin/make -C _build/docs doc make[2]: Entering directory '/build/apophenia-J78VSG/apophenia-1.0+ds/_build/docs' cat ../../model/apop_uniform.c ../../model/apop_kerneld.c ../../model/apop_exponential.c ../../model/apop_poisson.c ../../model/apop_wishart.c ../../model/apop_multinomial.c ../../model/apop_bernoulli.c ../../model/apop_dirichlet.c ../../model/apop_gamma.c ../../model/apop_yule.c ../../model/apop_pmf.c ../../model/apop_normal.c ../../model/apop_ols.c ../../model/apop_multivariate_normal.c ../../model/apop_loess.c ../../model/apop_beta.c ../../model/apop_t.c ../../model/apop_probit.c ../../model/apop_zipf.c ../../transform/apop_coordinate_transform.c ../../transform/apop_fix_params.c ../../transform/apop_mixture.c ../../transform/apop_cross.c ../../transform/apop_dconstrain.c | awk -f ../../docs/make_model_doc.awk > model_doc.h /usr/bin/dot -Tpng < ../../docs/structs.dot > structs.png /bin/mkdir -p include sed -e 's/__attribute.*;/;/;s/extern //' ../apop.h > include/apop.h doxygen doxygen.conf This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=latex) restricted \write18 enabled. entering extended mode (./_formulas.tex LaTeX2e <2018-12-01> for f in flake.gif search.gif right.png down.png tree.js ; do \ test -f ../../docs/$f && cp ../../docs/$f html/ ;\ done cp structs.png html/ sed -i -f ../../docs/edit_outline.sed html/index.html html/outline.html sed -i -f ../../docs/edit_group.sed html/group__models.html sed -i -f ../../docs/edit_width.sed html/*.html /build/apophenia-J78VSG/apophenia-1.0+ds/_build/../docs/adjust sed: can't read latex/Makefile: No such file or directory sed: can't read latex/refman.tex: No such file or directory sed: can't read latex/refman.tex: No such file or directory sed: can't read latex/refman.tex: No such file or directory sed: can't read latex/refman.tex: No such file or directory sed: can't read latex/Makefile: No such file or directory sed: couldn't open file edit_group.sed: No such file or directory sed: can't read latex/group__models.tex: No such file or directory grep: latex/group__all__public.tex: No such file or directory sed: -e expression #1, char 37: unexpected `,' sed: can't read latex/*tex: No such file or directory sed: can't read latex/*tex: No such file or directory sed: can't read latex/*tex: No such file or directory sed: can't read latex/doxygen.sty: No such file or directory sed: can't read latex/doxygen.sty: No such file or directory sed: can't read latex/doxygen.sty: No such file or directory rdfind -outputname /dev/null -makesymlinks true html Now scanning "html", found 470 files. Now have 470 files in total. Removed 0 files due to nonunique device and inode. Total size is 3519401 bytes or 3 MiB Removed 281 files due to unique sizes from list.189 files left. Now eliminating candidates based on first bytes:removed 98 files from list.91 files left. Now eliminating candidates based on last bytes:removed 8 files from list.83 files left. Now eliminating candidates based on sha1 checksum:removed 67 files from list.16 files left. It seems like you have 16 files that are not unique Totally, 3 KiB can be reduced. Now making results file /dev/null Now making symbolic links. creating Making 8 links. symlinks -r -c -s -v html absolute: /build/apophenia-J78VSG/apophenia-1.0+ds/_build/docs/html/search/variables_7.js -> /build/apophenia-J78VSG/apophenia-1.0+ds/_build/docs/html/search/all_8.js changed: /build/apophenia-J78VSG/apophenia-1.0+ds/_build/docs/html/search/variables_7.js -> all_8.js absolute: /build/apophenia-J78VSG/apophenia-1.0+ds/_build/docs/html/search/variables_11.js -> /build/apophenia-J78VSG/apophenia-1.0+ds/_build/docs/html/search/all_12.js changed: /build/apophenia-J78VSG/apophenia-1.0+ds/_build/docs/html/search/variables_11.js -> all_12.js absolute: /build/apophenia-J78VSG/apophenia-1.0+ds/_build/docs/html/search/variables_13.js -> /build/apophenia-J78VSG/apophenia-1.0+ds/_build/docs/html/search/all_14.js changed: /build/apophenia-J78VSG/apophenia-1.0+ds/_build/docs/html/search/variables_13.js -> all_14.js absolute: /build/apophenia-J78VSG/apophenia-1.0+ds/_build/docs/html/search/variables_1.js -> /build/apophenia-J78VSG/apophenia-1.0+ds/_build/docs/html/search/all_1.js changed: /build/apophenia-J78VSG/apophenia-1.0+ds/_build/docs/html/search/variables_1.js -> all_1.js absolute: /build/apophenia-J78VSG/apophenia-1.0+ds/_build/docs/html/search/variables_9.js -> /build/apophenia-J78VSG/apophenia-1.0+ds/_build/docs/html/search/all_a.js changed: /build/apophenia-J78VSG/apophenia-1.0+ds/_build/docs/html/search/variables_9.js -> all_a.js absolute: /build/apophenia-J78VSG/apophenia-1.0+ds/_build/docs/html/search/variables_5.js -> /build/apophenia-J78VSG/apophenia-1.0+ds/_build/docs/html/search/all_6.js changed: /build/apophenia-J78VSG/apophenia-1.0+ds/_build/docs/html/search/variables_5.js -> all_6.js absolute: /build/apophenia-J78VSG/apophenia-1.0+ds/_build/docs/html/search/variables_8.js -> /build/apophenia-J78VSG/apophenia-1.0+ds/_build/docs/html/search/all_9.js changed: /build/apophenia-J78VSG/apophenia-1.0+ds/_build/docs/html/search/variables_8.js -> all_9.js absolute: /build/apophenia-J78VSG/apophenia-1.0+ds/_build/docs/html/form_97.png -> /build/apophenia-J78VSG/apophenia-1.0+ds/_build/docs/html/form_149.png changed: /build/apophenia-J78VSG/apophenia-1.0+ds/_build/docs/html/form_97.png -> form_149.png rm -f html/jquery.js rm -f html/formula.repository rm -f html/_formulas.tex html/_formulas.log make[2]: Leaving directory '/build/apophenia-J78VSG/apophenia-1.0+ds/_build/docs' make[1]: Leaving directory '/build/apophenia-J78VSG/apophenia-1.0+ds' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-indep dh binary-indep --builddirectory=_build dh_testroot -i -O--builddirectory=_build dh_prep -i -O--builddirectory=_build dh_install -i -O--builddirectory=_build dh_installdocs -i -O--builddirectory=_build dh_installdocs: Cannot auto-detect main package for apophenia-doc. If the default is wrong, please use --doc-main-package dh_installchangelogs -i -O--builddirectory=_build dh_installexamples -i -O--builddirectory=_build dh_installexamples: Cannot auto-detect main package for apophenia-doc. If the default is wrong, please use --doc-main-package dh_installman -i -O--builddirectory=_build dh_installinit -i -O--builddirectory=_build dh_installsystemduser -i -O--builddirectory=_build dh_perl -i -O--builddirectory=_build dh_link -i -O--builddirectory=_build dh_strip_nondeterminism -i -O--builddirectory=_build debian/rules override_dh_compress-indep make[1]: Entering directory '/build/apophenia-J78VSG/apophenia-1.0+ds' dh_compress -X.pdf -Xexamples make[1]: Leaving directory '/build/apophenia-J78VSG/apophenia-1.0+ds' dh_fixperms -i -O--builddirectory=_build dh_missing -i -O--builddirectory=_build dh_installdeb -i -O--builddirectory=_build dh_gencontrol -i -O--builddirectory=_build dh_md5sums -i -O--builddirectory=_build dh_builddeb -i -O--builddirectory=_build dpkg-deb: building package 'apophenia-doc' in '../apophenia-doc_1.0+ds-8_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../apophenia_1.0+ds-8_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/apophenia-J78VSG /tmp/apophenia-1.0+ds-8afaal84e I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.KQYwGyZLVr... I: success in 502.6795 seconds md5: apophenia-doc_1.0+ds-8_all.deb: OK sha1: apophenia-doc_1.0+ds-8_all.deb: OK sha256: apophenia-doc_1.0+ds-8_all.deb: OK Checksums: OK