Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/a/amp/amp_0.6.1-1+b4_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/amp-0.6.1-1+b4d7llaoqr/amp_0.6.1-1+b4_amd64.buildinfo Get source package info: amp=0.6.1-1 Source URL: http://snapshot.notset.fr/mr/package/amp/0.6.1-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.118 autoconf=2.69-11.1 automake=1:1.16.3-1 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.48 bash=5.1~rc3-1 binutils=2.35.1-4 binutils-common=2.35.1-4 binutils-x86-64-linux-gnu=2.35.1-4 bsdextrautils=2.36.1-2 bsdutils=1:2.36.1-2 build-essential=12.8 bzip2=1.0.8-4 ca-certificates=20200601 coreutils=8.32-4+b1 cpp=4:10.2.0-1 cpp-10=10.2.0-23 dash=0.5.11+git20200708+dd9ef66-2 debconf=1.5.74 debhelper=13.3 debianutils=4.11.2 dh-autoreconf=19 dh-python=4.20201102 dh-strip-nondeterminism=1.9.0-1 diffutils=1:3.7-3 dpkg=1.20.5 dpkg-dev=1.20.5 dwz=0.13+20201015-2 file=1:5.39-3 findutils=4.7.0+git20201010-2 fonts-font-awesome=5.0.10+really4.7.0~dfsg-2 fonts-glyphicons-halflings=1.009~3.4.1+dfsg-1 fonts-lyx=2.3.6-1 g++=4:10.2.0-1 g++-10=10.2.0-23 gcc=4:10.2.0-1 gcc-10=10.2.0-23 gcc-10-base=10.2.0-23 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 gfortran=4:10.2.0-1 gfortran-10=10.2.0-23 grep=3.6-1 groff-base=1.22.4-5 gzip=1.10-2 hostname=3.23 init-system-helpers=1.59 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-8 libarchive-zip-perl=1.68-1 libasan6=10.2.0-23 libatomic1=10.2.0-23 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-3.1 libaudit1=1:2.8.5-3.1 libbinutils=2.35.1-4 libblas3=3.9.0-3 libblkid1=2.36.1-2 libbrotli1=1.0.9-2+b1 libbsd0=0.10.0-1 libbz2-1.0=1.0.8-4 libc-bin=2.31-5 libc-dev-bin=2.31-5 libc6=2.31-5 libc6-dev=2.31-5 libcap-ng0=0.7.9-2.2+b1 libcbor0=0.5.0+dfsg-2 libcc1-0=10.2.0-23 libcom-err2=1.45.6-1 libcroco3=0.6.13-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-4 libctf0=2.35.1-4 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.255 libdebhelper-perl=13.3 libdpkg-perl=1.20.5 libedit2=3.1-20191231-1 libelf1=0.182-1 libexpat1=2.2.10-1 libexpat1-dev=2.2.10-1 libffi7=3.3-5 libfido2-1=1.5.0-2 libfile-stripnondeterminism-perl=1.9.0-1 libfreetype6=2.10.2+dfsg-4 libgcc-10-dev=10.2.0-23 libgcc-s1=10.2.0-23 libgcrypt20=1.8.7-2 libgdbm-compat4=1.18.1-5.1 libgdbm6=1.18.1-5.1 libgfortran-10-dev=10.2.0-23 libgfortran5=10.2.0-23 libglib2.0-0=2.66.3-2 libgmp10=2:6.2.1+dfsg-1 libgomp1=10.2.0-23 libgpg-error0=1.38-2 libgssapi-krb5-2=1.18.3-4 libicu67=67.1-4 libimagequant0=2.12.2-1.1 libisl23=0.23-1 libitm1=10.2.0-23 libjbig0=2.1-3.1+b2 libjpeg62-turbo=1:2.0.5-1.1 libjs-bootstrap=3.4.1+dfsg-1 libjs-jquery=3.5.1+dfsg+~3.5.4-3 libjs-jquery-ui=1.12.1+dfsg-7 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 liblapack3=3.9.0-3 liblbfgsb0=3.0+dfsg.3-9 liblcms2-2=2.9-4+b1 liblsan0=10.2.0-23 liblz4-1=1.9.2-2 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmount1=2.36.1-2 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libncurses6=6.2+20201114-1 libncursesw6=6.2+20201114-1 libnorm1=1.5.8+dfsg2-2 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpcre2-8-0=10.35-2 libpcre3=2:8.39-13 libperl5.32=5.32.0-5 libpgm-5.3-0=5.3.128~dfsg-2 libpipeline1=1.5.3-1 libpng16-16=1.6.37-3 libprocps8=2:3.3.16-5 libpython3-all-dev=3.9.0-4 libpython3-dev=3.9.0-4 libpython3-stdlib=3.9.0-4 libpython3.8-minimal=3.8.6-1 libpython3.8-stdlib=3.8.6-1 libpython3.9=3.9.1~rc1-2 libpython3.9-dev=3.9.1~rc1-2 libpython3.9-minimal=3.9.1~rc1-2 libpython3.9-stdlib=3.9.1~rc1-2 libquadmath0=10.2.0-23 libreadline8=8.1~rc3-1 libseccomp2=2.5.0-3 libselinux1=3.1-2+b1 libsemanage-common=3.1-1 libsemanage1=3.1-1+b1 libsepol1=3.1-1 libsigsegv2=2.12-2 libsmartcols1=2.36.1-2 libsodium23=1.0.18-1 libsqlite3-0=3.34.0-1 libssl1.1=1.1.1h-1 libstdc++-10-dev=10.2.0-23 libstdc++6=10.2.0-23 libsub-override-perl=0.09-2 libsystemd0=247.1-3 libtiff5=4.1.0+git191117-2 libtinfo6=6.2+20201114-1 libtirpc-common=1.2.6-3 libtirpc-dev=1.2.6-3 libtirpc3=1.2.6-3 libtool=2.4.6-14 libtsan0=10.2.0-23 libubsan1=10.2.0-23 libuchardet0=0.0.7-1 libudev1=247.1-3 libunistring2=0.9.10-4 libuuid1=2.36.1-2 libwebp6=0.6.1-2+b1 libwebpdemux2=0.6.1-2+b1 libwebpmux3=0.6.1-2+b1 libwrap0=7.6.q-31 libxau6=1:1.0.8-1+b2 libxcb1=1.14-2 libxdmcp6=1:1.1.2-3 libxml2=2.9.10+dfsg-6.3 libzmq5=4.3.3-4 libzstd1=1.4.5+dfsg-4 linux-libc-dev=5.9.11-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 mailcap=3.67 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 media-types=1.0.1 mime-support=3.66 ncurses-base=6.2+20201114-1 ncurses-bin=6.2+20201114-1 node-jquery=3.5.1+dfsg+~3.5.4-3 openssh-client=1:8.4p1-3 openssh-server=1:8.4p1-3 openssh-sftp-server=1:8.4p1-3 openssl=1.1.1h-1 passwd=1:4.8.1-1 patch=2.7.6-6 perl=5.32.0-5 perl-base=5.32.0-5 perl-modules-5.32=5.32.0-5 po-debconf=1.0.21 procps=2:3.3.16-5 python-matplotlib-data=3.3.2-2 python3=3.9.0-4 python3-all=3.9.0-4 python3-all-dev=3.9.0-4 python3-ase=3.20.1-1 python3-certifi=2020.6.20-1 python3-cycler=0.10.0-3 python3-dateutil=2.8.1-4 python3-decorator=4.4.2-2 python3-dev=3.9.0-4 python3-distutils=3.8.6-1 python3-kiwisolver=1.3.1-1 python3-lib2to3=3.8.6-1 python3-matplotlib=3.3.2-2 python3-minimal=3.9.0-4 python3-nose=1.3.7-7 python3-numpy=1:1.19.4-1 python3-pexpect=4.6.0-4 python3-pil=8.0.1-1 python3-pkg-resources=50.3.0-1 python3-ptyprocess=0.6.0-3 python3-pyparsing=2.4.7-1 python3-scipy=1.5.4-1 python3-setuptools=50.3.0-1 python3-six=1.15.0-2 python3-spglib=1.16.0-1+b2 python3-zmq=20.0.0-1 python3.8=3.8.6-1 python3.8-minimal=3.8.6-1 python3.9=3.9.1~rc1-2 python3.9-dev=3.9.1~rc1-2 python3.9-minimal=3.9.1~rc1-2 readline-common=8.1~rc3-1 runit-helper=2.10.2 sed=4.7-1 sensible-utils=0.0.12+nmu1 sysvinit-utils=2.96-5 tar=1.32+dfsg-1 ttf-bitstream-vera=1.10-8 tzdata=2020d-1 ucf=3.0043 util-linux=2.36.1-2 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201207T085039Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d amp=0.6.1-1 && mkdir -p /build/amp-nccThr && dpkg-source --no-check -x /*.dsc /build/amp-nccThr/amp-0.6.1 && cd /build/amp-nccThr/amp-0.6.1 && { printf '%s' 'amp (0.6.1-1+b4) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Python 3.9 only -- all / amd64 / i386 Build Daemon (x86-conova-01) Mon, 07 Dec 2020 09:56:52 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/amp-nccThr" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/amp-nccThr/amp-0.6.1 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1607335012" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/amp-nccThr /tmp/amp-0.6.1-1+b4d7llaoqr bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20201207T085039Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.0f0dffmxlh as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.0f0dffmxlh Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-2). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20201207T085039Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20201207T085039Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (849 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4614 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-5) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201207T085039Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.0f0dffmxlh Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20201207T085039Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 25s (894 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.0f0dffmxlh I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d amp=0.6.1-1 && mkdir -p /build/amp-nccThr && dpkg-source --no-check -x /*.dsc /build/amp-nccThr/amp-0.6.1 && cd /build/amp-nccThr/amp-0.6.1 && { printf '%s' 'amp (0.6.1-1+b4) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Python 3.9 only -- all / amd64 / i386 Build Daemon (x86-conova-01) Mon, 07 Dec 2020 09:56:52 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/amp-nccThr"' exec /tmp/mmdebstrap.0f0dffmxlh Reading package lists... NOTICE: 'amp' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/amp.git Please use: git clone https://salsa.debian.org/science-team/amp.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3256 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amp 0.6.1-1 (dsc) [2095 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amp 0.6.1-1 (tar) [3250 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amp 0.6.1-1 (diff) [3428 B] Fetched 3256 kB in 3s (1245 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'amp_0.6.1-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting amp in /build/amp-nccThr/amp-0.6.1 dpkg-source: info: unpacking amp_0.6.1.orig.tar.gz dpkg-source: info: unpacking amp_0.6.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_Makefile.patch dpkg-source: info: applying 03_tools.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/amp-nccThr/amp-0.6.1 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1607335012" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.0f0dffmxlh dpkg-buildpackage: info: source package amp dpkg-buildpackage: info: source version 0.6.1-1+b4 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by all / amd64 / i386 Build Daemon (x86-conova-01) dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/amp-nccThr/amp-0.6.1' dh_auto_clean I: pybuild base:232: python3.9 setup.py clean /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'install_requires' warnings.warn(msg) running clean removing '/build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts.linux-x86_64-3.9' does not exist -- can't clean it rm -rf amp.egg-info/ find . -name "*.json" -delete find . -name "*-train-log.txt" -delete find . -name "*.pyc" -delete find . -name "*.o" -delete find . -name "*.mod" -delete find . -name "*.so" -delete make[1]: Leaving directory '/build/amp-nccThr/amp-0.6.1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build-arch dh build-arch --with python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'install_requires' warnings.warn(msg) running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild pybuild:284: make -C amp python3.9 make[1]: Entering directory '/build/amp-nccThr/amp-0.6.1/amp' Building for python3.9 (3.9) make -C model make[2]: Entering directory '/build/amp-nccThr/amp-0.6.1/amp/model' gfortran -c neuralnetwork.f90 cp neuralnetwork.mod .. make[2]: Leaving directory '/build/amp-nccThr/amp-0.6.1/amp/model' make -C descriptor make[2]: Entering directory '/build/amp-nccThr/amp-0.6.1/amp/descriptor' gfortran -c cutoffs.f90 cp cutoffs.mod .. make[2]: Leaving directory '/build/amp-nccThr/amp-0.6.1/amp/descriptor' f2py3.9 -c -m fmodules model.f90 descriptor/cutoffs.f90 descriptor/gaussian.f90 descriptor/zernike.f90 model/neuralnetwork.f90 running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "fmodules" sources f2py options: [] f2py:> /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodulesmodule.c creating /tmp/tmp_erza8_m/src.linux-x86_64-3.9 rmbadname1: Replacing "index" with "index_bn". Reading fortran codes... Reading file 'model.f90' (format:fix) Line #99 in model.f90:" type:: image_forces " analyzeline: No name/args pattern found for line. Line #104 in model.f90:" type:: integer_one_d_array " analyzeline: No name/args pattern found for line. Line #109 in model.f90:" type:: embedded_real_one_one_d_array " analyzeline: No name/args pattern found for line. Line #114 in model.f90:" type:: embedded_real_one_two_d_array " analyzeline: No name/args pattern found for line. Line #119 in model.f90:" type:: embedded_integer_one_one_d_array " analyzeline: No name/args pattern found for line. Line #124 in model.f90:" type:: embedded_one_one_two_d_array " analyzeline: No name/args pattern found for line. Reading file 'descriptor/cutoffs.f90' (format:fix) Reading file 'descriptor/gaussian.f90' (format:free) Reading file 'descriptor/zernike.f90' (format:free) Reading file 'model/neuralnetwork.f90' (format:fix) Line #17 in model/neuralnetwork.f90:" type:: real_two_d_array " analyzeline: No name/args pattern found for line. Line #22 in model/neuralnetwork.f90:" type:: element_parameters " analyzeline: No name/args pattern found for line. Line #29 in model/neuralnetwork.f90:" type:: real_one_d_array " analyzeline: No name/args pattern found for line. Post-processing... Block: fmodules Block: check_version Block: fingerprint_props Block: model_props Block: images_props {} In: :fmodules:model.f90:calculate_loss:calculate_energy vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_forces vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_denergy_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_numerical_denergy_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_dforces_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_numerical_dforces_dparameters vars2fortran: No typespec for argument "image_no". Block: calculate_loss In: :fmodules:model.f90:calculate_loss get_useparameters: no module neuralnetwork info used by calculate_loss Block: unknown_type In: :fmodules:model.f90:calculate_loss:unknown_type get_useparameters: no module neuralnetwork info used by unknown_type Block: unknown_type In: :fmodules:model.f90:calculate_loss:unknown_type get_useparameters: no module neuralnetwork info used by unknown_type Block: unknown_type In: :fmodules:model.f90:calculate_loss:unknown_type get_useparameters: no module neuralnetwork info used by unknown_type Block: unknown_type In: :fmodules:model.f90:calculate_loss:unknown_type get_useparameters: no module neuralnetwork info used by unknown_type Block: unknown_type In: :fmodules:model.f90:calculate_loss:unknown_type get_useparameters: no module neuralnetwork info used by unknown_type Block: unknown_type In: :fmodules:model.f90:calculate_loss:unknown_type get_useparameters: no module neuralnetwork info used by unknown_type Block: deallocate_variables In: :fmodules:model.f90:deallocate_variables get_useparameters: no module neuralnetwork info used by deallocate_variables Block: cutoffs Block: cutoff_fxn Block: cutoff_fxn_prime Block: calculate_g2 Block: calculate_g4 Block: calculate_g2_prime Block: calculate_g4_prime Block: calculate_zernike_prime Block: calculate_z Block: calculate_z_prime Block: calculate_q Block: binomial Block: neuralnetwork Block: unknown_type Block: unknown_type Block: unknown_type Block: calculate_image_energy Block: calculate_atomic_energy Block: calculate_force_ Block: calculate_force Block: calculate_denergy_dparameters_ Block: calculate_datomicenergy_dparameters Block: calculate_dforce_dparameters_ Block: calculate_dforce_dparameters Post-processing (stage 2)... Block: fmodules Block: unknown_interface Block: check_version Block: fingerprint_props Block: model_props Block: images_props Block: calculate_loss Block: unknown_type Block: unknown_type Block: unknown_type Block: unknown_type Block: unknown_type Block: unknown_type Block: deallocate_variables Block: cutoffs Block: cutoff_fxn Block: cutoff_fxn_prime Block: calculate_g2 Block: calculate_g4 Block: calculate_g2_prime Block: calculate_g4_prime Block: calculate_zernike_prime Block: calculate_z Block: calculate_z_prime Block: calculate_q Block: binomial Block: neuralnetwork Block: unknown_type Block: unknown_type Block: unknown_type Block: calculate_image_energy Block: calculate_atomic_energy Block: calculate_force_ Block: calculate_force Block: calculate_denergy_dparameters_ Block: calculate_datomicenergy_dparameters Block: calculate_dforce_dparameters_ Block: calculate_dforce_dparameters Building modules... Building module "fmodules"... Constructing wrapper function "check_version"... warning = check_version(version) Constructing wrapper function "calculate_loss"... loss,dloss_dparameters,energyloss,forceloss,energy_maxresid,force_maxresid = calculate_loss(parameters,lossprime,[num_parameters]) Constructing wrapper function "deallocate_variables"... deallocate_variables() Constructing wrapper function "calculate_g2"... ridge = calculate_g2(neighbornumbers,neighborpositions,g_number,g_eta,rc,cutofffn,ri,[p_gamma]) Constructing wrapper function "calculate_g4"... ridge = calculate_g4(neighbornumbers,neighborpositions,g_numbers,g_gamma,g_zeta,g_eta,rc,cutofffn,ri,[p_gamma]) Constructing wrapper function "calculate_g2_prime"... ridge = calculate_g2_prime(neighborindices,neighbornumbers,neighborpositions,g_number,g_eta,rc,cutofffn,i,ri,m,l,[p_gamma]) Constructing wrapper function "calculate_g4_prime"... ridge = calculate_g4_prime(neighborindices,neighbornumbers,neighborpositions,g_numbers,g_gamma,g_zeta,g_eta,rc,cutofffn,i,ri,m,l,[p_gamma]) Constructing wrapper function "calculate_zernike_prime"... norm_prime = calculate_zernike_prime(n,l,n_indices,numbers,rs,g_numbers,cutoff,indexx,home,p,q,factorial,cutofffn,[n_length,fac_length,p_gamma]) Constructing wrapper function "calculate_z"... output = calculate_z(n,l,m,x,y,z,factorial,[length]) Constructing wrapper function "calculate_z_prime"... output = calculate_z_prime(n,l,m,x,y,z,p,factorial,[length]) Constructing wrapper function "calculate_q"... output = calculate_q(nu,k,l,factorial,[length]) Constructing wrapper function "binomial"... output = binomial(n,k,factorial,[length]) Constructing F90 module support for "fingerprint_props"... Variables: num_fingerprints_of_elements raveled_fingerprints raveled_fingerprintprimes getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Constructing F90 module support for "model_props"... Variables: mode_signal train_forces energy_coefficient force_coefficient overfit numericprime d Constructing F90 module support for "images_props"... Variables: num_images num_elements elements_numbers num_images_atoms atomic_numbers num_neighbors raveled_neighborlists actual_energies actual_forces num_atoms atomic_positions getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Constructing F90 module support for "cutoffs"... Creating wrapper for Fortran function "cutoff_fxn"("cutoff_fxn")... Constructing wrapper function "cutoffs.cutoff_fxn"... cutoff_fxn = cutoff_fxn(r,rc,cutofffn,[p_gamma]) Creating wrapper for Fortran function "cutoff_fxn_prime"("cutoff_fxn_prime")... Constructing wrapper function "cutoffs.cutoff_fxn_prime"... cutoff_fxn_prime = cutoff_fxn_prime(r,rc,cutofffn,[p_gamma]) Constructing F90 module support for "neuralnetwork"... Variables: min_fingerprints max_fingerprints no_layers_of_elements no_nodes_of_elements activation_signal getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Skipping type unknown_type Skipping type unknown_type Skipping type unknown_type Creating wrapper for Fortran function "calculate_image_energy"("calculate_image_energy")... Constructing wrapper function "neuralnetwork.calculate_image_energy"... calculate_image_energy = calculate_image_energy(inputs,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_atomic_energy"("calculate_atomic_energy")... Constructing wrapper function "neuralnetwork.calculate_atomic_energy"... calculate_atomic_energy = calculate_atomic_energy(symbol,fingerprint,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_force_"("calculate_force_")... Constructing wrapper function "neuralnetwork.calculate_force_"... calculate_force_ = calculate_force_(inputs,inputs_,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_force"("calculate_force")... Constructing wrapper function "neuralnetwork.calculate_force"... calculate_force = calculate_force(symbol,fingerprint,fingerprintprime,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_denergy_dparameters_"("calculate_denergy_dparameters_")... Constructing wrapper function "neuralnetwork.calculate_denergy_dparameters_"... calculate_denergy_dparameters_ = calculate_denergy_dparameters_(inputs,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_datomicenergy_dparameters"("calculate_datomicenergy_dparameters")... Constructing wrapper function "neuralnetwork.calculate_datomicenergy_dparameters"... calculate_datomicenergy_dparameters = calculate_datomicenergy_dparameters(symbol,fingerprint,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_dforce_dparameters_"("calculate_dforce_dparameters_")... Constructing wrapper function "neuralnetwork.calculate_dforce_dparameters_"... calculate_dforce_dparameters_ = calculate_dforce_dparameters_(inputs,inputs_,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_dforce_dparameters"("calculate_dforce_dparameters")... Constructing wrapper function "neuralnetwork.calculate_dforce_dparameters"... calculate_dforce_dparameters = calculate_dforce_dparameters(symbol,fingerprint,fingerprintprime,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Wrote C/API module "fmodules" to file "/tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodulesmodule.c" Fortran 90 wrappers are saved to "/tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodules-f2pywrappers2.f90" adding '/tmp/tmp_erza8_m/src.linux-x86_64-3.9/fortranobject.c' to sources. adding '/tmp/tmp_erza8_m/src.linux-x86_64-3.9' to include_dirs. copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.c -> /tmp/tmp_erza8_m/src.linux-x86_64-3.9 copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.h -> /tmp/tmp_erza8_m/src.linux-x86_64-3.9 adding '/tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodules-f2pywrappers2.f90' to sources. build_src: building npy-pkg config files running build_ext customize UnixCCompiler customize UnixCCompiler using build_ext get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor']' customize Gnu95FCompiler Found executable /usr/bin/gfortran customize Gnu95FCompiler customize Gnu95FCompiler using build_ext building 'fmodules' extension compiling C sources C compiler: x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/amp-nccThr/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC creating /tmp/tmp_erza8_m/tmp creating /tmp/tmp_erza8_m/tmp/tmp_erza8_m creating /tmp/tmp_erza8_m/tmp/tmp_erza8_m/src.linux-x86_64-3.9 compile options: '-I/tmp/tmp_erza8_m/src.linux-x86_64-3.9 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c' x86_64-linux-gnu-gcc: /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodulesmodule.c x86_64-linux-gnu-gcc: /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fortranobject.c In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fortranobject.h:13, from /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fortranobject.c:2: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fortranobject.h:13, from /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodulesmodule.c:16: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodulesmodule.c: In function ‘f2py_setup_fingerprint_props’: /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodulesmodule.c:3998:45: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 3998 | f2py_fingerprint_props_def[i_f2py++].func = num_fingerprints_of_elements; | ^ /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodulesmodule.c:3999:45: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 3999 | f2py_fingerprint_props_def[i_f2py++].func = raveled_fingerprints; | ^ /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodulesmodule.c:4000:45: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4000 | f2py_fingerprint_props_def[i_f2py++].func = raveled_fingerprintprimes; | ^ /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodulesmodule.c: In function ‘f2py_setup_images_props’: /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodulesmodule.c:4054:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4054 | f2py_images_props_def[i_f2py++].func = elements_numbers; | ^ /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodulesmodule.c:4055:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4055 | f2py_images_props_def[i_f2py++].func = num_images_atoms; | ^ /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodulesmodule.c:4056:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4056 | f2py_images_props_def[i_f2py++].func = atomic_numbers; | ^ /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodulesmodule.c:4057:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4057 | f2py_images_props_def[i_f2py++].func = num_neighbors; | ^ /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodulesmodule.c:4058:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4058 | f2py_images_props_def[i_f2py++].func = raveled_neighborlists; | ^ /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodulesmodule.c:4059:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4059 | f2py_images_props_def[i_f2py++].func = actual_energies; | ^ /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodulesmodule.c:4060:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4060 | f2py_images_props_def[i_f2py++].func = actual_forces; | ^ /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodulesmodule.c:4062:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4062 | f2py_images_props_def[i_f2py++].func = atomic_positions; | ^ /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodulesmodule.c: In function ‘f2py_setup_neuralnetwork’: /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodulesmodule.c:4106:41: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4106 | f2py_neuralnetwork_def[i_f2py++].func = min_fingerprints; | ^ /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodulesmodule.c:4107:41: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4107 | f2py_neuralnetwork_def[i_f2py++].func = max_fingerprints; | ^ /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodulesmodule.c:4108:41: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4108 | f2py_neuralnetwork_def[i_f2py++].func = no_layers_of_elements; | ^ /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodulesmodule.c:4109:41: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4109 | f2py_neuralnetwork_def[i_f2py++].func = no_nodes_of_elements; | ^ At top level: /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodulesmodule.c:144:12: warning: ‘f2py_size’ defined but not used [-Wunused-function] 144 | static int f2py_size(PyArrayObject* var, ...) | ^~~~~~~~~ compiling Fortran 90 module sources Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -g -O2 -fdebug-prefix-map=/build/amp-nccThr/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -g -O2 -fdebug-prefix-map=/build/amp-nccThr/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -g -O2 -fdebug-prefix-map=/build/amp-nccThr/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops creating /tmp/tmp_erza8_m/descriptor creating /tmp/tmp_erza8_m/model compile options: '-I/tmp/tmp_erza8_m/src.linux-x86_64-3.9 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c' extra options: '-J/tmp/tmp_erza8_m/ -I/tmp/tmp_erza8_m/' gfortran:f90: model.f90 model.f90:219:2: 219 | do j = 1, num_parameters | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:220:2: 220 | denergy_dparameters(j) = 0.0d0 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:221:2: 221 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:269:2: 269 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:270:2: 270 | allocate(dforces_dparameters(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:271:2: 271 | selfindex)%twodarray(3, num_parameters)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:272:2: 272 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:273:2: 273 | do j = 1, num_parameters | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:274:2: 274 | dforces_dparameters(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:275:2: 275 | selfindex)%twodarray(i, j) = 0.0d0 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:276:2: 276 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:277:2: 277 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:278:2: 278 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:300:2: 300 | do p = 1, size(dforces_dparameters) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:301:2: 301 | deallocate(dforces_dparameters(p)%twodarray) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:302:2: 302 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:303:2: 303 | deallocate(dforces_dparameters) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:323:2: 323 | doverfitloss_dparameters(j) = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:646:2: 646 | allocate(fplus(num_atoms, 3)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:647:2: 647 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:648:2: 648 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:649:2: 649 | fplus(selfindex, i) = amp_forces(selfindex, i) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:650:2: 650 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:651:2: 651 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:655:2: 655 | allocate(fminus(num_atoms, 3)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:656:2: 656 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:657:2: 657 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:658:2: 658 | fminus(selfindex, i) = amp_forces(selfindex, i) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:659:2: 659 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:660:2: 660 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] gfortran:f90: descriptor/cutoffs.f90 gfortran:f90: model/neuralnetwork.f90 model/neuralnetwork.f90:1379:2: 1379 | unraveled_dforce_dweights(layer)%twodarray(p, q) = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model/neuralnetwork.f90:1380:2: 1380 | -1.0d0 * unraveled_dforce_dweights(layer)%twodarray(p, q) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model/neuralnetwork.f90:1767:2: 1767 | unraveled_dforce_dparameters(element)%slope = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model/neuralnetwork.f90:1768:2: 1768 | -1.0d0 * unraveled_dforce_dparameters(element)%slope | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model/neuralnetwork.f90:1802:2: 1802 | unraveled_dforce_dparameters(element)%weights(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] compiling Fortran sources Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -g -O2 -fdebug-prefix-map=/build/amp-nccThr/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -g -O2 -fdebug-prefix-map=/build/amp-nccThr/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -g -O2 -fdebug-prefix-map=/build/amp-nccThr/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops compile options: '-I/tmp/tmp_erza8_m/src.linux-x86_64-3.9 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c' extra options: '-J/tmp/tmp_erza8_m/ -I/tmp/tmp_erza8_m/' gfortran:f90: descriptor/gaussian.f90 gfortran:f90: descriptor/zernike.f90 gfortran:f90: /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodules-f2pywrappers2.f90 /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodules-f2pywrappers2.f90:102:10: 102 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable ‘num_fingerprints_of_elements’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodules-f2pywrappers2.f90:102:10: 102 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable ‘raveled_fingerprintprimes’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodules-f2pywrappers2.f90:102:10: 102 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable ‘raveled_fingerprints’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘actual_energies’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘actual_forces’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘atomic_numbers’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘atomic_positions’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘elements_numbers’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘num_images_atoms’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘num_neighbors’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable ‘raveled_neighborlists’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodules-f2pywrappers2.f90:706:10: 706 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable ‘max_fingerprints’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodules-f2pywrappers2.f90:706:10: 706 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable ‘min_fingerprints’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodules-f2pywrappers2.f90:706:10: 706 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable ‘no_layers_of_elements’ which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodules-f2pywrappers2.f90:706:10: 706 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable ‘no_nodes_of_elements’ which has been explicitly imported at (1) [-Wunused-variable] /usr/bin/gfortran -Wall -g -Wall -g -shared -Wl,-z,relro -Wl,-z,now -shared /tmp/tmp_erza8_m/tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodulesmodule.o /tmp/tmp_erza8_m/tmp/tmp_erza8_m/src.linux-x86_64-3.9/fortranobject.o /tmp/tmp_erza8_m/model.o /tmp/tmp_erza8_m/descriptor/cutoffs.o /tmp/tmp_erza8_m/model/neuralnetwork.o /tmp/tmp_erza8_m/descriptor/gaussian.o /tmp/tmp_erza8_m/descriptor/zernike.o /tmp/tmp_erza8_m/tmp/tmp_erza8_m/src.linux-x86_64-3.9/fmodules-f2pywrappers2.o -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10 -lgfortran -o ./fmodules.cpython-39-x86_64-linux-gnu.so Removing build directory /tmp/tmp_erza8_m make[1]: Leaving directory '/build/amp-nccThr/amp-0.6.1/amp' I: pybuild base:232: /usr/bin/python3 setup.py build /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'install_requires' warnings.warn(msg) running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "amp.fmodules" sources f2py options: [] f2py:> build/src.linux-x86_64-3.9/amp/fmodulesmodule.c creating build creating build/src.linux-x86_64-3.9 creating build/src.linux-x86_64-3.9/amp rmbadname1: Replacing "index" with "index_bn". Reading fortran codes... Reading file 'amp/model/neuralnetwork.f90' (format:fix) Line #17 in amp/model/neuralnetwork.f90:" type:: real_two_d_array " analyzeline: No name/args pattern found for line. Line #22 in amp/model/neuralnetwork.f90:" type:: element_parameters " analyzeline: No name/args pattern found for line. Line #29 in amp/model/neuralnetwork.f90:" type:: real_one_d_array " analyzeline: No name/args pattern found for line. Reading file 'amp/descriptor/gaussian.f90' (format:free) Reading file 'amp/descriptor/cutoffs.f90' (format:fix) Reading file 'amp/descriptor/zernike.f90' (format:free) Reading file 'amp/model.f90' (format:fix) Line #99 in amp/model.f90:" type:: image_forces " analyzeline: No name/args pattern found for line. Line #104 in amp/model.f90:" type:: integer_one_d_array " analyzeline: No name/args pattern found for line. Line #109 in amp/model.f90:" type:: embedded_real_one_one_d_array " analyzeline: No name/args pattern found for line. Line #114 in amp/model.f90:" type:: embedded_real_one_two_d_array " analyzeline: No name/args pattern found for line. Line #119 in amp/model.f90:" type:: embedded_integer_one_one_d_array " analyzeline: No name/args pattern found for line. Line #124 in amp/model.f90:" type:: embedded_one_one_two_d_array " analyzeline: No name/args pattern found for line. Post-processing... Block: fmodules Block: neuralnetwork Block: unknown_type Block: unknown_type Block: unknown_type Block: calculate_image_energy Block: calculate_atomic_energy Block: calculate_force_ Block: calculate_force Block: calculate_denergy_dparameters_ Block: calculate_datomicenergy_dparameters Block: calculate_dforce_dparameters_ Block: calculate_dforce_dparameters Block: calculate_g2 In: :fmodules:amp/descriptor/gaussian.f90:calculate_g2 get_useparameters: no module cutoffs info used by calculate_g2 Block: calculate_g4 In: :fmodules:amp/descriptor/gaussian.f90:calculate_g4 get_useparameters: no module cutoffs info used by calculate_g4 Block: calculate_g2_prime In: :fmodules:amp/descriptor/gaussian.f90:calculate_g2_prime get_useparameters: no module cutoffs info used by calculate_g2_prime Block: calculate_g4_prime In: :fmodules:amp/descriptor/gaussian.f90:calculate_g4_prime get_useparameters: no module cutoffs info used by calculate_g4_prime Block: cutoffs Block: cutoff_fxn Block: cutoff_fxn_prime Block: calculate_zernike_prime Block: calculate_z Block: calculate_z_prime Block: calculate_q Block: binomial Block: check_version Block: fingerprint_props Block: model_props Block: images_props {} In: :fmodules:amp/model.f90:calculate_loss:calculate_energy vars2fortran: No typespec for argument "image_no". {} In: :fmodules:amp/model.f90:calculate_loss:calculate_forces vars2fortran: No typespec for argument "image_no". {} In: :fmodules:amp/model.f90:calculate_loss:calculate_denergy_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:amp/model.f90:calculate_loss:calculate_numerical_denergy_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:amp/model.f90:calculate_loss:calculate_dforces_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:amp/model.f90:calculate_loss:calculate_numerical_dforces_dparameters vars2fortran: No typespec for argument "image_no". Block: calculate_loss Block: unknown_type Block: unknown_type Block: unknown_type Block: unknown_type Block: unknown_type Block: unknown_type Block: deallocate_variables Post-processing (stage 2)... Block: fmodules Block: unknown_interface Block: neuralnetwork Block: unknown_type Block: unknown_type Block: unknown_type Block: calculate_image_energy Block: calculate_atomic_energy Block: calculate_force_ Block: calculate_force Block: calculate_denergy_dparameters_ Block: calculate_datomicenergy_dparameters Block: calculate_dforce_dparameters_ Block: calculate_dforce_dparameters Block: calculate_g2 Block: calculate_g4 Block: calculate_g2_prime Block: calculate_g4_prime Block: cutoffs Block: cutoff_fxn Block: cutoff_fxn_prime Block: calculate_zernike_prime Block: calculate_z Block: calculate_z_prime Block: calculate_q Block: binomial Block: check_version Block: fingerprint_props Block: model_props Block: images_props Block: calculate_loss Block: unknown_type Block: unknown_type Block: unknown_type Block: unknown_type Block: unknown_type Block: unknown_type Block: deallocate_variables Building modules... Building module "fmodules"... Constructing wrapper function "calculate_g2"... ridge = calculate_g2(neighbornumbers,neighborpositions,g_number,g_eta,rc,cutofffn,ri,[p_gamma]) Constructing wrapper function "calculate_g4"... ridge = calculate_g4(neighbornumbers,neighborpositions,g_numbers,g_gamma,g_zeta,g_eta,rc,cutofffn,ri,[p_gamma]) Constructing wrapper function "calculate_g2_prime"... ridge = calculate_g2_prime(neighborindices,neighbornumbers,neighborpositions,g_number,g_eta,rc,cutofffn,i,ri,m,l,[p_gamma]) Constructing wrapper function "calculate_g4_prime"... ridge = calculate_g4_prime(neighborindices,neighbornumbers,neighborpositions,g_numbers,g_gamma,g_zeta,g_eta,rc,cutofffn,i,ri,m,l,[p_gamma]) Constructing wrapper function "calculate_zernike_prime"... norm_prime = calculate_zernike_prime(n,l,n_indices,numbers,rs,g_numbers,cutoff,indexx,home,p,q,factorial,cutofffn,[n_length,fac_length,p_gamma]) Constructing wrapper function "calculate_z"... output = calculate_z(n,l,m,x,y,z,factorial,[length]) Constructing wrapper function "calculate_z_prime"... output = calculate_z_prime(n,l,m,x,y,z,p,factorial,[length]) Constructing wrapper function "calculate_q"... output = calculate_q(nu,k,l,factorial,[length]) Constructing wrapper function "binomial"... output = binomial(n,k,factorial,[length]) Constructing wrapper function "check_version"... warning = check_version(version) Constructing wrapper function "calculate_loss"... loss,dloss_dparameters,energyloss,forceloss,energy_maxresid,force_maxresid = calculate_loss(parameters,lossprime,[num_parameters]) Constructing wrapper function "deallocate_variables"... deallocate_variables() Constructing F90 module support for "neuralnetwork"... Variables: min_fingerprints max_fingerprints no_layers_of_elements no_nodes_of_elements activation_signal getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Skipping type unknown_type Skipping type unknown_type Skipping type unknown_type Creating wrapper for Fortran function "calculate_image_energy"("calculate_image_energy")... Constructing wrapper function "neuralnetwork.calculate_image_energy"... calculate_image_energy = calculate_image_energy(inputs,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_atomic_energy"("calculate_atomic_energy")... Constructing wrapper function "neuralnetwork.calculate_atomic_energy"... calculate_atomic_energy = calculate_atomic_energy(symbol,fingerprint,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_force_"("calculate_force_")... Constructing wrapper function "neuralnetwork.calculate_force_"... calculate_force_ = calculate_force_(inputs,inputs_,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_force"("calculate_force")... Constructing wrapper function "neuralnetwork.calculate_force"... calculate_force = calculate_force(symbol,fingerprint,fingerprintprime,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_denergy_dparameters_"("calculate_denergy_dparameters_")... Constructing wrapper function "neuralnetwork.calculate_denergy_dparameters_"... calculate_denergy_dparameters_ = calculate_denergy_dparameters_(inputs,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_datomicenergy_dparameters"("calculate_datomicenergy_dparameters")... Constructing wrapper function "neuralnetwork.calculate_datomicenergy_dparameters"... calculate_datomicenergy_dparameters = calculate_datomicenergy_dparameters(symbol,fingerprint,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_dforce_dparameters_"("calculate_dforce_dparameters_")... Constructing wrapper function "neuralnetwork.calculate_dforce_dparameters_"... calculate_dforce_dparameters_ = calculate_dforce_dparameters_(inputs,inputs_,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_dforce_dparameters"("calculate_dforce_dparameters")... Constructing wrapper function "neuralnetwork.calculate_dforce_dparameters"... calculate_dforce_dparameters = calculate_dforce_dparameters(symbol,fingerprint,fingerprintprime,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Constructing F90 module support for "cutoffs"... Creating wrapper for Fortran function "cutoff_fxn"("cutoff_fxn")... Constructing wrapper function "cutoffs.cutoff_fxn"... cutoff_fxn = cutoff_fxn(r,rc,cutofffn,[p_gamma]) Creating wrapper for Fortran function "cutoff_fxn_prime"("cutoff_fxn_prime")... Constructing wrapper function "cutoffs.cutoff_fxn_prime"... cutoff_fxn_prime = cutoff_fxn_prime(r,rc,cutofffn,[p_gamma]) Constructing F90 module support for "fingerprint_props"... Variables: num_fingerprints_of_elements raveled_fingerprints raveled_fingerprintprimes getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Constructing F90 module support for "model_props"... Variables: mode_signal train_forces energy_coefficient force_coefficient overfit numericprime d Constructing F90 module support for "images_props"... Variables: num_images num_elements elements_numbers num_images_atoms atomic_numbers num_neighbors raveled_neighborlists actual_energies actual_forces num_atoms atomic_positions getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Wrote C/API module "fmodules" to file "build/src.linux-x86_64-3.9/amp/fmodulesmodule.c" Fortran 90 wrappers are saved to "build/src.linux-x86_64-3.9/amp/fmodules-f2pywrappers2.f90" adding 'build/src.linux-x86_64-3.9/build/src.linux-x86_64-3.9/amp/fortranobject.c' to sources. adding 'build/src.linux-x86_64-3.9/build/src.linux-x86_64-3.9/amp' to include_dirs. creating build/src.linux-x86_64-3.9/build creating build/src.linux-x86_64-3.9/build/src.linux-x86_64-3.9 creating build/src.linux-x86_64-3.9/build/src.linux-x86_64-3.9/amp copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.c -> build/src.linux-x86_64-3.9/build/src.linux-x86_64-3.9/amp copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.h -> build/src.linux-x86_64-3.9/build/src.linux-x86_64-3.9/amp adding 'build/src.linux-x86_64-3.9/amp/fmodules-f2pywrappers2.f90' to sources. build_src: building npy-pkg config files running build_py creating /build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp copying amp/__init__.py -> /build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp copying amp/utilities.py -> /build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp copying amp/analysis.py -> /build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp creating /build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/descriptor copying amp/descriptor/__init__.py -> /build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/descriptor copying amp/descriptor/bispectrum.py -> /build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/descriptor copying amp/descriptor/gaussian.py -> /build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/descriptor copying amp/descriptor/example.py -> /build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/descriptor copying amp/descriptor/zernike.py -> /build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/descriptor copying amp/descriptor/analysis.py -> /build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/descriptor copying amp/descriptor/cutoffs.py -> /build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/descriptor creating /build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/regression copying amp/regression/__init__.py -> /build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/regression creating /build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/model copying amp/model/neuralnetwork.py -> /build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/model copying amp/model/__init__.py -> /build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/model copying amp/model/__main__.py -> /build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/model copying amp/model/tflow.py -> /build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/model copying amp/VERSION -> /build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp running build_ext customize UnixCCompiler customize UnixCCompiler using build_ext get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor']' customize Gnu95FCompiler Found executable /usr/bin/gfortran customize Gnu95FCompiler customize Gnu95FCompiler using build_ext building 'amp.fmodules' extension compiling C sources C compiler: x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/amp-nccThr/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC creating build/temp.linux-x86_64-3.9/build creating build/temp.linux-x86_64-3.9/build/src.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/build/src.linux-x86_64-3.9/amp creating build/temp.linux-x86_64-3.9/build/src.linux-x86_64-3.9/build creating build/temp.linux-x86_64-3.9/build/src.linux-x86_64-3.9/build/src.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/build/src.linux-x86_64-3.9/build/src.linux-x86_64-3.9/amp compile options: '-Ibuild/src.linux-x86_64-3.9/build/src.linux-x86_64-3.9/amp -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c' x86_64-linux-gnu-gcc: build/src.linux-x86_64-3.9/amp/fmodulesmodule.c x86_64-linux-gnu-gcc: build/src.linux-x86_64-3.9/build/src.linux-x86_64-3.9/amp/fortranobject.c In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.linux-x86_64-3.9/build/src.linux-x86_64-3.9/amp/fortranobject.h:13, from build/src.linux-x86_64-3.9/amp/fmodulesmodule.c:16: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.linux-x86_64-3.9/build/src.linux-x86_64-3.9/amp/fortranobject.h:13, from build/src.linux-x86_64-3.9/build/src.linux-x86_64-3.9/amp/fortranobject.c:2: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ build/src.linux-x86_64-3.9/amp/fmodulesmodule.c: In function ‘f2py_setup_neuralnetwork’: build/src.linux-x86_64-3.9/amp/fmodulesmodule.c:4008:41: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4008 | f2py_neuralnetwork_def[i_f2py++].func = min_fingerprints; | ^ build/src.linux-x86_64-3.9/amp/fmodulesmodule.c:4009:41: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4009 | f2py_neuralnetwork_def[i_f2py++].func = max_fingerprints; | ^ build/src.linux-x86_64-3.9/amp/fmodulesmodule.c:4010:41: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4010 | f2py_neuralnetwork_def[i_f2py++].func = no_layers_of_elements; | ^ build/src.linux-x86_64-3.9/amp/fmodulesmodule.c:4011:41: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4011 | f2py_neuralnetwork_def[i_f2py++].func = no_nodes_of_elements; | ^ build/src.linux-x86_64-3.9/amp/fmodulesmodule.c: In function ‘f2py_setup_fingerprint_props’: build/src.linux-x86_64-3.9/amp/fmodulesmodule.c:4054:45: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4054 | f2py_fingerprint_props_def[i_f2py++].func = num_fingerprints_of_elements; | ^ build/src.linux-x86_64-3.9/amp/fmodulesmodule.c:4055:45: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4055 | f2py_fingerprint_props_def[i_f2py++].func = raveled_fingerprints; | ^ build/src.linux-x86_64-3.9/amp/fmodulesmodule.c:4056:45: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4056 | f2py_fingerprint_props_def[i_f2py++].func = raveled_fingerprintprimes; | ^ build/src.linux-x86_64-3.9/amp/fmodulesmodule.c: In function ‘f2py_setup_images_props’: build/src.linux-x86_64-3.9/amp/fmodulesmodule.c:4110:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4110 | f2py_images_props_def[i_f2py++].func = elements_numbers; | ^ build/src.linux-x86_64-3.9/amp/fmodulesmodule.c:4111:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4111 | f2py_images_props_def[i_f2py++].func = num_images_atoms; | ^ build/src.linux-x86_64-3.9/amp/fmodulesmodule.c:4112:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4112 | f2py_images_props_def[i_f2py++].func = atomic_numbers; | ^ build/src.linux-x86_64-3.9/amp/fmodulesmodule.c:4113:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4113 | f2py_images_props_def[i_f2py++].func = num_neighbors; | ^ build/src.linux-x86_64-3.9/amp/fmodulesmodule.c:4114:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4114 | f2py_images_props_def[i_f2py++].func = raveled_neighborlists; | ^ build/src.linux-x86_64-3.9/amp/fmodulesmodule.c:4115:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4115 | f2py_images_props_def[i_f2py++].func = actual_energies; | ^ build/src.linux-x86_64-3.9/amp/fmodulesmodule.c:4116:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4116 | f2py_images_props_def[i_f2py++].func = actual_forces; | ^ build/src.linux-x86_64-3.9/amp/fmodulesmodule.c:4118:40: warning: assignment to ‘f2py_init_func’ {aka ‘void (*)(int *, long int *, void (*)(char *, long int *), int *)’} from incompatible pointer type ‘void (*)(int *, int *, void (*)(char *, int *), int *)’ [-Wincompatible-pointer-types] 4118 | f2py_images_props_def[i_f2py++].func = atomic_positions; | ^ At top level: build/src.linux-x86_64-3.9/amp/fmodulesmodule.c:144:12: warning: ‘f2py_size’ defined but not used [-Wunused-function] 144 | static int f2py_size(PyArrayObject* var, ...) | ^~~~~~~~~ compiling Fortran 90 module sources creating build/temp.linux-x86_64-3.9/amp Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -g -O2 -fdebug-prefix-map=/build/amp-nccThr/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -g -O2 -fdebug-prefix-map=/build/amp-nccThr/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -g -O2 -fdebug-prefix-map=/build/amp-nccThr/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops creating build/temp.linux-x86_64-3.9/amp/model creating build/temp.linux-x86_64-3.9/amp/descriptor compile options: '-Ibuild/src.linux-x86_64-3.9/build/src.linux-x86_64-3.9/amp -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c' extra options: '-Jbuild/temp.linux-x86_64-3.9/amp -Ibuild/temp.linux-x86_64-3.9/amp' gfortran:f90: amp/model/neuralnetwork.f90 amp/model/neuralnetwork.f90:1379:2: 1379 | unraveled_dforce_dweights(layer)%twodarray(p, q) = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model/neuralnetwork.f90:1380:2: 1380 | -1.0d0 * unraveled_dforce_dweights(layer)%twodarray(p, q) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model/neuralnetwork.f90:1767:2: 1767 | unraveled_dforce_dparameters(element)%slope = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model/neuralnetwork.f90:1768:2: 1768 | -1.0d0 * unraveled_dforce_dparameters(element)%slope | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model/neuralnetwork.f90:1802:2: 1802 | unraveled_dforce_dparameters(element)%weights(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] gfortran:f90: amp/descriptor/cutoffs.f90 gfortran:f90: amp/model.f90 amp/model.f90:219:2: 219 | do j = 1, num_parameters | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:220:2: 220 | denergy_dparameters(j) = 0.0d0 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:221:2: 221 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:269:2: 269 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:270:2: 270 | allocate(dforces_dparameters(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:271:2: 271 | selfindex)%twodarray(3, num_parameters)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:272:2: 272 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:273:2: 273 | do j = 1, num_parameters | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:274:2: 274 | dforces_dparameters(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:275:2: 275 | selfindex)%twodarray(i, j) = 0.0d0 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:276:2: 276 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:277:2: 277 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:278:2: 278 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:300:2: 300 | do p = 1, size(dforces_dparameters) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:301:2: 301 | deallocate(dforces_dparameters(p)%twodarray) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:302:2: 302 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:303:2: 303 | deallocate(dforces_dparameters) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:323:2: 323 | doverfitloss_dparameters(j) = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:646:2: 646 | allocate(fplus(num_atoms, 3)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:647:2: 647 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:648:2: 648 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:649:2: 649 | fplus(selfindex, i) = amp_forces(selfindex, i) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:650:2: 650 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:651:2: 651 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:655:2: 655 | allocate(fminus(num_atoms, 3)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:656:2: 656 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:657:2: 657 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:658:2: 658 | fminus(selfindex, i) = amp_forces(selfindex, i) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:659:2: 659 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:660:2: 660 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] compiling Fortran sources Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -g -O2 -fdebug-prefix-map=/build/amp-nccThr/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -g -O2 -fdebug-prefix-map=/build/amp-nccThr/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -g -O2 -fdebug-prefix-map=/build/amp-nccThr/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops compile options: '-Ibuild/src.linux-x86_64-3.9/build/src.linux-x86_64-3.9/amp -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c' extra options: '-Jbuild/temp.linux-x86_64-3.9/amp -Ibuild/temp.linux-x86_64-3.9/amp' gfortran:f90: amp/descriptor/gaussian.f90 gfortran:f90: amp/descriptor/zernike.f90 gfortran:f90: build/src.linux-x86_64-3.9/amp/fmodules-f2pywrappers2.f90 build/src.linux-x86_64-3.9/amp/fmodules-f2pywrappers2.f90:256:10: 256 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable ‘max_fingerprints’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-x86_64-3.9/amp/fmodules-f2pywrappers2.f90:256:10: 256 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable ‘min_fingerprints’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-x86_64-3.9/amp/fmodules-f2pywrappers2.f90:256:10: 256 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable ‘no_layers_of_elements’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-x86_64-3.9/amp/fmodules-f2pywrappers2.f90:256:10: 256 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable ‘no_nodes_of_elements’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-x86_64-3.9/amp/fmodules-f2pywrappers2.f90:533:10: 533 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable ‘num_fingerprints_of_elements’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-x86_64-3.9/amp/fmodules-f2pywrappers2.f90:533:10: 533 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable ‘raveled_fingerprintprimes’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-x86_64-3.9/amp/fmodules-f2pywrappers2.f90:533:10: 533 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable ‘raveled_fingerprints’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-x86_64-3.9/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable ‘actual_energies’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-x86_64-3.9/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable ‘actual_forces’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-x86_64-3.9/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable ‘atomic_numbers’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-x86_64-3.9/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable ‘atomic_positions’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-x86_64-3.9/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable ‘elements_numbers’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-x86_64-3.9/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable ‘num_images_atoms’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-x86_64-3.9/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable ‘num_neighbors’ which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-x86_64-3.9/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable ‘raveled_neighborlists’ which has been explicitly imported at (1) [-Wunused-variable] /usr/bin/gfortran -Wall -g -Wall -g -shared -Wl,-z,relro -Wl,-z,now -shared build/temp.linux-x86_64-3.9/build/src.linux-x86_64-3.9/amp/fmodulesmodule.o build/temp.linux-x86_64-3.9/build/src.linux-x86_64-3.9/build/src.linux-x86_64-3.9/amp/fortranobject.o build/temp.linux-x86_64-3.9/amp/model/neuralnetwork.o build/temp.linux-x86_64-3.9/amp/descriptor/cutoffs.o build/temp.linux-x86_64-3.9/amp/model.o build/temp.linux-x86_64-3.9/amp/descriptor/gaussian.o build/temp.linux-x86_64-3.9/amp/descriptor/zernike.o build/temp.linux-x86_64-3.9/build/src.linux-x86_64-3.9/amp/fmodules-f2pywrappers2.o -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10 -lgfortran -o /build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/fmodules.cpython-39-x86_64-linux-gnu.so debian/rules override_dh_auto_test make[1]: Entering directory '/build/amp-nccThr/amp-0.6.1' PYBUILD_SYSTEM=custom \ PYBUILD_TEST_ARGS="cd {build_dir}; {interpreter} /usr/bin/nosetests3 tests" \ dh_auto_test make[1]: Leaving directory '/build/amp-nccThr/amp-0.6.1' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/amp-nccThr/amp-0.6.1/debian/python3-amp /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'install_requires' warnings.warn(msg) running install running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "amp.fmodules" sources f2py options: [] adding 'build/src.linux-x86_64-3.9/build/src.linux-x86_64-3.9/amp/fortranobject.c' to sources. adding 'build/src.linux-x86_64-3.9/build/src.linux-x86_64-3.9/amp' to include_dirs. adding 'build/src.linux-x86_64-3.9/amp/fmodules-f2pywrappers2.f90' to sources. build_src: building npy-pkg config files running build_py running build_ext customize UnixCCompiler customize UnixCCompiler using build_ext get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor']' customize Gnu95FCompiler Found executable /usr/bin/gfortran customize Gnu95FCompiler customize Gnu95FCompiler using build_ext running install_lib creating /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr creating /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib creating /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9 creating /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages creating /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp creating /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/descriptor copying /build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/descriptor/__init__.py -> /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/descriptor copying /build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/descriptor/bispectrum.py -> /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/descriptor copying /build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/descriptor/gaussian.py -> /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/descriptor copying /build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/descriptor/example.py -> /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/descriptor copying /build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/descriptor/zernike.py -> /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/descriptor copying /build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/descriptor/analysis.py -> /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/descriptor copying /build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/descriptor/cutoffs.py -> /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/descriptor copying /build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/__init__.py -> /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp creating /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/model copying /build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/model/neuralnetwork.py -> /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/model copying /build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/model/__init__.py -> /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/model copying /build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/model/__main__.py -> /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/model copying /build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/model/tflow.py -> /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/model creating /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/regression copying /build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/regression/__init__.py -> /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/regression copying /build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/VERSION -> /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp copying /build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/utilities.py -> /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp copying /build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/fmodules.cpython-39-x86_64-linux-gnu.so -> /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp copying /build/amp-nccThr/amp-0.6.1/.pybuild/cpython3_3.9_amp/build/amp/analysis.py -> /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp byte-compiling /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/descriptor/__init__.py to __init__.cpython-39.pyc byte-compiling /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/descriptor/bispectrum.py to bispectrum.cpython-39.pyc /usr/lib/python3.9/dist-packages/amp/descriptor/bispectrum.py:398: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.9/dist-packages/amp/descriptor/bispectrum.py:400: SyntaxWarning: "is" with a literal. Did you mean "=="? byte-compiling /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/descriptor/gaussian.py to gaussian.cpython-39.pyc byte-compiling /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/descriptor/example.py to example.cpython-39.pyc byte-compiling /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/descriptor/zernike.py to zernike.cpython-39.pyc /usr/lib/python3.9/dist-packages/amp/descriptor/zernike.py:569: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.9/dist-packages/amp/descriptor/zernike.py:571: SyntaxWarning: "is" with a literal. Did you mean "=="? byte-compiling /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/descriptor/analysis.py to analysis.cpython-39.pyc byte-compiling /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/descriptor/cutoffs.py to cutoffs.cpython-39.pyc byte-compiling /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/__init__.py to __init__.cpython-39.pyc byte-compiling /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/model/neuralnetwork.py to neuralnetwork.cpython-39.pyc byte-compiling /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/model/__init__.py to __init__.cpython-39.pyc byte-compiling /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/model/__main__.py to __main__.cpython-39.pyc byte-compiling /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/model/tflow.py to tflow.cpython-39.pyc byte-compiling /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/regression/__init__.py to __init__.cpython-39.pyc byte-compiling /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/utilities.py to utilities.cpython-39.pyc byte-compiling /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp/analysis.py to analysis.cpython-39.pyc running install_egg_info Writing /build/amp-nccThr/amp-0.6.1/debian/python3-amp/usr/lib/python3.9/dist-packages/amp_atomistics-0.6.1.egg-info running install_clib customize UnixCCompiler I: pybuild pybuild:310: cp -r '/build/amp-nccThr/amp-0.6.1/tests' '/build/amp-nccThr/amp-0.6.1/debian/python3-amp//usr/lib/python3.9/dist-packages/amp' dh_install -a -O--buildsystem=pybuild dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild debian/rules override_dh_python3 make[1]: Entering directory '/build/amp-nccThr/amp-0.6.1' dh_python3 W: dh_python3 fs:113: Paths differ: debian/python3-amp/usr/lib/python3.9/dist-packages/amp/fmodules.cpython-39-x86_64-linux-gnu.so and debian/python3-amp/usr/lib/python3/dist-packages/amp/fmodules.cpython-39-x86_64-linux-gnu.so I: dh_python3 tools:114: replacing shebang in debian/python3-amp/usr/bin/amp-compress I: dh_python3 tools:114: replacing shebang in debian/python3-amp/usr/bin/amp-plotconvergence dh_numpy3 dh_fixperms make[1]: Leaving directory '/build/amp-nccThr/amp-0.6.1' dh_installinit -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dpkg-gencontrol: warning: Breaks field of package python3-amp: substitution variable ${python3:Breaks} used, but is not defined dpkg-gencontrol: warning: package python3-amp: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-amp: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: Breaks field of package python3-amp: substitution variable ${python3:Breaks} used, but is not defined dpkg-gencontrol: warning: package python3-amp: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-amp: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild dpkg-deb: building package 'python3-amp' in '../python3-amp_0.6.1-1+b4_amd64.deb'. dpkg-deb: building package 'python3-amp-dbgsym' in '../python3-amp-dbgsym_0.6.1-1+b4_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../amp_0.6.1-1+b4_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/amp-nccThr /tmp/amp-0.6.1-1+b4d7llaoqr I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.0f0dffmxlh... I: success in 829.5499 seconds md5: Value of 'md5' differs for python3-amp-dbgsym_0.6.1-1+b4_amd64.deb md5: Size differs for python3-amp-dbgsym_0.6.1-1+b4_amd64.deb md5: Value of 'md5' differs for python3-amp_0.6.1-1+b4_amd64.deb md5: Size differs for python3-amp_0.6.1-1+b4_amd64.deb sha1: Value of 'sha1' differs for python3-amp-dbgsym_0.6.1-1+b4_amd64.deb sha1: Size differs for python3-amp-dbgsym_0.6.1-1+b4_amd64.deb sha1: Value of 'sha1' differs for python3-amp_0.6.1-1+b4_amd64.deb sha1: Size differs for python3-amp_0.6.1-1+b4_amd64.deb sha256: Value of 'sha256' differs for python3-amp-dbgsym_0.6.1-1+b4_amd64.deb sha256: Size differs for python3-amp-dbgsym_0.6.1-1+b4_amd64.deb sha256: Value of 'sha256' differs for python3-amp_0.6.1-1+b4_amd64.deb sha256: Size differs for python3-amp_0.6.1-1+b4_amd64.deb Checksums: FAIL Cannot generate diffoscope for python3-amp-dbgsym_0.6.1-1+b4_amd64.deb: Cannot find URL: http://snapshot.notset.fr/mr/file/8051742ca795f4665719cd4fd4fe400c57d00628a70869da31f8470ef2d99417/download diffoscope run passed