Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/a/allelecount/allelecount_4.3.0-1.1_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/allelecount-4.3.0-1.1hkx5r6jv/allelecount_4.3.0-1.1_all.buildinfo Get source package info: allelecount=4.3.0-1.1 Source URL: http://snapshot.notset.fr/mr/package/allelecount/4.3.0-1.1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.4-2 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.52 bash=5.1-3+b2 binutils=2.37-7 binutils-common=2.37-7 binutils-x86-64-linux-gnu=2.37-7 bsdextrautils=2.37.2-3 bsdutils=1:2.37.2-3 build-essential=12.9 bzip2=1.0.8-4 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.3.0-11 dash=0.5.11+git20210120+802ebd4-1 debconf=1.5.77 debhelper=13.5.2 debianutils=5.5-1 dh-autoreconf=20 dh-strip-nondeterminism=1.12.0-1 diffutils=1:3.7-5 dpkg=1.20.9 dpkg-dev=1.20.9 dwz=0.14-1 file=1:5.39-3 findutils=4.8.0-1 g++=4:10.2.1-1 g++-10=10.3.0-11 gcc=4:10.2.1-1 gcc-10=10.3.0-11 gcc-10-base=10.3.0-11 gcc-11-base=11.2.0-8 gettext=0.21-4 gettext-base=0.21-4 grep=3.7-1 groff-base=1.22.4-7 gzip=1.10-4 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libarchive-zip-perl=1.68-1 libasan6=11.2.0-8 libatomic1=11.2.0-8 libattr1=1:2.5.1-1 libaudit-common=1:3.0.5-1 libaudit1=1:3.0.5-1 libb-debug-perl=1.26-2 libbinutils=2.37-7 libblkid1=2.37.2-3 libbrotli1=1.0.9-2+b2 libbz2-1.0=1.0.8-4 libbz2-dev=1.0.8-4 libc-bin=2.32-4 libc-dev-bin=2.32-4 libc6=2.32-4 libc6-dev=2.32-4 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcc1-0=11.2.0-8 libcom-err2=1.46.4-1 libconst-fast-perl=0.014-1.1 libcrypt-dev=1:4.4.25-2 libcrypt1=1:4.4.25-2 libctf-nobfd0=2.37-7 libctf0=2.37-7 libcurl3-gnutls=7.74.0-1.3+b1 libcurl4-gnutls-dev=7.74.0-1.3+b1 libdata-optlist-perl=0.112-1 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.260 libdebhelper-perl=13.5.2 libdeflate-dev=1.7-2 libdeflate0=1.7-2 libdevel-cover-perl=1.36-2+b1 libdevel-symdump-perl=2.18-4 libdpkg-perl=1.20.9 libelf1=0.185-2 libffi8=3.4.2-2 libfile-slurp-perl=9999.32-1 libfile-stripnondeterminism-perl=1.12.0-1 libfile-which-perl=1.23-1 libgcc-10-dev=10.3.0-11 libgcc-s1=11.2.0-8 libgcrypt20=1.9.4-3+b1 libgdbm-compat4=1.21-1 libgdbm6=1.21-1 libgmp10=2:6.2.1+dfsg-2 libgnutls30=3.7.2-2 libgomp1=11.2.0-8 libgpg-error0=1.42-3 libgssapi-krb5-2=1.18.3-7 libhogweed6=3.7.3-1 libhtml-parser-perl=3.76-1 libhtml-tagset-perl=3.20-4 libhts-dev=1.13+ds-2 libhts3=1.13+ds-2 libhtscodecs2=1.1.1-3+b1 libicu67=67.1-7 libidn2-0=2.3.2-2 libipc-system-simple-perl=1.30-1 libisl23=0.23-1 libitm1=11.2.0-8 libjson-perl=4.03000-1 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 libldap-2.4-2=2.4.59+dfsg-1 liblsan0=11.2.0-8 liblz4-1=1.9.3-2 liblzma-dev=5.2.5-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmount1=2.37.2-3 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libnettle8=3.7.3-1 libnghttp2-14=1.43.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libp11-kit0=0.24.0-3 libpam-modules=1.4.0-10 libpam-modules-bin=1.4.0-10 libpam-runtime=1.4.0-10 libpam0g=1.4.0-10 libparams-util-perl=1.102-1+b1 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.1-6 libpipeline1=1.5.3-1 libpod-coverage-perl=0.23-2 libpod-parser-perl=1.63-2 libpsl5=0.21.0-1.2 libquadmath0=11.2.0-8 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg-2.1 libsasl2-modules-db=2.1.27+dfsg-2.1 libseccomp2=2.5.2-2 libselinux1=3.1-3 libsigsegv2=2.13-1 libsmartcols1=2.37.2-3 libssh2-1=1.10.0-2 libssl1.1=1.1.1l-1 libstdc++-10-dev=10.3.0-11 libstdc++6=11.2.0-8 libsub-exporter-perl=0.988-1 libsub-exporter-progressive-perl=0.001013-1 libsub-install-perl=0.928-1.1 libsub-override-perl=0.09-2 libsystemd0=247.9-4 libtasn1-6=4.17.0-2 libtest-fatal-perl=0.016-1 libtinfo6=6.2+20210905-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtry-tiny-perl=0.30-1 libtsan0=11.2.0-8 libubsan1=11.2.0-8 libuchardet0=0.0.7-1 libudev1=247.9-4 libunistring2=0.9.10-6 liburi-perl=5.08-1 libuuid1=2.37.2-3 libxml2=2.9.12+dfsg-5 libzstd1=1.4.8+dfsg-3 linux-libc-dev=5.14.9-2 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-2 mawk=1.3.4.20200120-2 ncurses-base=6.2+20210905-1 ncurses-bin=6.2+20210905-1 patch=2.7.6-7 perl=5.32.1-6 perl-base=5.32.1-6 perl-modules-5.32=5.32.1-6 po-debconf=1.0.21+nmu1 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.00-1 tar=1.34+dfsg-1 util-linux=2.37.2-3 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211009T024746Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211009T024746Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211009T024746Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d allelecount=4.3.0-1.1 && mkdir -p /build/allelecount-IY8NPV && dpkg-source --no-check -x /*.dsc /build/allelecount-IY8NPV/allelecount-4.3.0 && chown -R builduser:builduser /build/allelecount-IY8NPV" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/allelecount-IY8NPV/allelecount-4.3.0 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1633605175" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/allelecount-IY8NPV /tmp/allelecount-4.3.0-1.1hkx5r6jv bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20211009T024746Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.I285aL3Wbr as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.I285aL3Wbr Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-3). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20211009T024746Z unstable/main amd64 libfakeroot amd64 1.26-1 [47.3 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211009T024746Z unstable/main amd64 fakeroot amd64 1.26-1 [87.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1079 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4667 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.26-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.26-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.26-1_amd64.deb ... Unpacking fakeroot (1.26-1) ... Setting up libfakeroot:amd64 (1.26-1) ... Setting up fakeroot (1.26-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.32-4) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211009T024746Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211009T024746Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211009T024746Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.I285aL3Wbr Get:1 http://snapshot.notset.fr/archive/debian/20211009T024746Z bookworm InRelease [128 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20211009T024746Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20211009T024746Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211009T024746Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211009T024746Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211009T024746Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211009T024746Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211009T024746Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20211009T024746Z bookworm/main Sources [11.7 MB] Get:4 http://snapshot.notset.fr/archive/debian/20211009T024746Z bookworm/main amd64 Packages [11.2 MB] Fetched 23.0 MB in 19s (1186 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.I285aL3Wbr I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d allelecount=4.3.0-1.1 && mkdir -p /build/allelecount-IY8NPV && dpkg-source --no-check -x /*.dsc /build/allelecount-IY8NPV/allelecount-4.3.0 && chown -R builduser:builduser /build/allelecount-IY8NPV"' exec /tmp/mmdebstrap.I285aL3Wbr Reading package lists... NOTICE: 'allelecount' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/allelecount.git Please use: git clone https://salsa.debian.org/med-team/allelecount.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1408 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20211009T024746Z bookworm/main allelecount 4.3.0-1.1 (dsc) [2421 B] Get:2 http://snapshot.notset.fr/archive/debian/20211009T024746Z bookworm/main allelecount 4.3.0-1.1 (tar) [1391 kB] Get:3 http://snapshot.notset.fr/archive/debian/20211009T024746Z bookworm/main allelecount 4.3.0-1.1 (diff) [15.3 kB] Fetched 1408 kB in 1s (1139 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'allelecount_4.3.0-1.1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting allelecount in /build/allelecount-IY8NPV/allelecount-4.3.0 dpkg-source: info: unpacking allelecount_4.3.0.orig.tar.gz dpkg-source: info: unpacking allelecount_4.3.0-1.1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/allelecount-IY8NPV/allelecount-4.3.0 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1633605175" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.I285aL3Wbr dpkg-buildpackage: info: source package allelecount dpkg-buildpackage: info: source version 4.3.0-1.1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/allelecount-IY8NPV/allelecount-4.3.0' dh_auto_clean --sourcedirectory=c cd c && make -j10 clean make[2]: Entering directory '/build/allelecount-IY8NPV/allelecount-4.3.0/c' rm -f ./src/*.o *~ ./bin/alleleCounter ./bin/* ./tests/tests_log ./tests/bam_access_tests ./src/*.gcda ./src/*.gcov ./src/*.gcno *.gcda *.gcov *.gcno ./tests/*.gcda ./tests/*.gcov ./tests/*.gcno make[2]: Leaving directory '/build/allelecount-IY8NPV/allelecount-4.3.0/c' dh_auto_clean --sourcedirectory=perl make[1]: Leaving directory '/build/allelecount-IY8NPV/allelecount-4.3.0' dh_clean debian/rules binary-indep dh binary-indep dh_update_autotools_config -i dh_autoreconf -i debian/rules override_dh_auto_configure make[1]: Entering directory '/build/allelecount-IY8NPV/allelecount-4.3.0' dh_auto_configure --sourcedirectory=c dh_auto_configure --sourcedirectory=perl cd perl && /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -ffile-prefix-map=/build/allelecount-IY8NPV/allelecount-4.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/build/allelecount-IY8NPV/allelecount-4.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for alleleCount Writing MYMETA.yml and MYMETA.json make[1]: Leaving directory '/build/allelecount-IY8NPV/allelecount-4.3.0' debian/rules override_dh_auto_build make[1]: Entering directory '/build/allelecount-IY8NPV/allelecount-4.3.0' dh_auto_build --sourcedirectory=c cd c && make -j10 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/allelecount-IY8NPV/allelecount-4.3.0/c' rm -f ./src/*.o *~ ./bin/alleleCounter ./bin/* ./tests/tests_log ./tests/bam_access_tests ./src/*.gcda ./src/*.gcov ./src/*.gcno *.gcda *.gcov *.gcno ./tests/*.gcda ./tests/*.gcov ./tests/*.gcno mkdir -p ./bin mkdir -p ./htslib_tmp #Do some magic to ensure we compile ALLELECOUNT with the static libhts.a rather than libhts.so ln -fs /libhts.a ./htslib_tmp/libhts.a gcc -O3 -DALLELECOUNTER_VERSION='"4.3.0"' -g -O2 -ffile-prefix-map=/build/allelecount-IY8NPV/allelecount-4.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -I/usr/local//include -Isrc/ -I/ -rdynamic -c src/bam_access.c -o src/bam_access.o src/bam_access.c: In function ‘pileupCounts’: src/bam_access.c:132:56: warning: ‘pre_b’ may be used uninitialized in this function [-Wmaybe-uninitialized] 132 | if(!(p->is_del) && qual >= min_base_qual && (absent || pre_b != c)){ | ~~~~~~~~^~~~~~~~~~~~~~ gcc -O3 -DALLELECOUNTER_VERSION='"4.3.0"' -I/usr/local//include -Isrc/ -I/ -rdynamic -g -O2 -ffile-prefix-map=/build/allelecount-IY8NPV/allelecount-4.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -o ./bin/alleleCounter ./src/bam_access.o -L./htslib_tmp -L/usr/local//lib -lhts -lpthread -lz -lbz2 -llzma -lm -ldl ./src/alleleCounter.c -Wl,-z,relro -Wl,-z,now gcc -O3 -DALLELECOUNTER_VERSION='"4.3.0"' -g -O2 -ffile-prefix-map=/build/allelecount-IY8NPV/allelecount-4.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -I/usr/local//include -Isrc/ -I/ -rdynamic ./src/bam_access.o -L./htslib_tmp -lhts -lpthread -lz -lbz2 -llzma -lm -ldl -L/usr/local//lib -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now tests/bam_access_tests.c -o tests/bam_access_tests tests/bam_access_tests.c: In function ‘test_bam_access_get_position_base_counts’: tests/bam_access_tests.c:45:6: warning: variable ‘res’ set but not used [-Wunused-but-set-variable] 45 | int res = bam_access_get_position_base_counts(chr,pos,stats,0,NULL); | ^~~ sh ./tests/runtests.sh Running unit tests: ---- RUNNING: ./tests/bam_access_tests Performing pileup of 11250 reads at 1 198661939 ALL TESTS PASSED Tests run: 1 tests/bam_access_tests PASS remove tmp hts location rm -rf ./htslib_tmp Binaries have been compiled. make[2]: Leaving directory '/build/allelecount-IY8NPV/allelecount-4.3.0/c' dh_auto_build --sourcedirectory=perl cd perl && make -j10 make[2]: Entering directory '/build/allelecount-IY8NPV/allelecount-4.3.0/perl' cp lib/Sanger/CGP/AlleleCount/ToJson.pm blib/lib/Sanger/CGP/AlleleCount/ToJson.pm cp lib/Sanger/CGP/AlleleCount/Genotype.pm blib/lib/Sanger/CGP/AlleleCount/Genotype.pm cp lib/Sanger/CGP/AlleleCount.pm blib/lib/Sanger/CGP/AlleleCount.pm cp bin/alleleCounter.pl blib/script/alleleCounter.pl cp bin/alleleCounterToJson.pl blib/script/alleleCounterToJson.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/alleleCounter.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/alleleCounterToJson.pl Manifying 2 pod documents Manifying 2 pod documents make[2]: Leaving directory '/build/allelecount-IY8NPV/allelecount-4.3.0/perl' make[1]: Leaving directory '/build/allelecount-IY8NPV/allelecount-4.3.0' create-stamp debian/debhelper-build-stamp dh_prep -i debian/rules override_dh_auto_install make[1]: Entering directory '/build/allelecount-IY8NPV/allelecount-4.3.0' dh_auto_install --sourcedirectory=c dh_auto_install --sourcedirectory=perl cd perl && make -j10 install DESTDIR=/build/allelecount-IY8NPV/allelecount-4.3.0/debian/tmp AM_UPDATE_INFO_DIR=no PREFIX=/usr make[2]: Entering directory '/build/allelecount-IY8NPV/allelecount-4.3.0/perl' Manifying 2 pod documents Manifying 2 pod documents Installing /build/allelecount-IY8NPV/allelecount-4.3.0/debian/tmp/usr/share/perl5/Sanger/CGP/AlleleCount.pm Installing /build/allelecount-IY8NPV/allelecount-4.3.0/debian/tmp/usr/share/perl5/Sanger/CGP/AlleleCount/ToJson.pm Installing /build/allelecount-IY8NPV/allelecount-4.3.0/debian/tmp/usr/share/perl5/Sanger/CGP/AlleleCount/Genotype.pm Installing /build/allelecount-IY8NPV/allelecount-4.3.0/debian/tmp/usr/share/man/man1/alleleCounter.pl.1p Installing /build/allelecount-IY8NPV/allelecount-4.3.0/debian/tmp/usr/share/man/man1/alleleCounterToJson.pl.1p Installing /build/allelecount-IY8NPV/allelecount-4.3.0/debian/tmp/usr/share/man/man3/Sanger::CGP::AlleleCount::Genotype.3pm Installing /build/allelecount-IY8NPV/allelecount-4.3.0/debian/tmp/usr/share/man/man3/Sanger::CGP::AlleleCount::ToJson.3pm Installing /build/allelecount-IY8NPV/allelecount-4.3.0/debian/tmp/usr/bin/alleleCounterToJson.pl Installing /build/allelecount-IY8NPV/allelecount-4.3.0/debian/tmp/usr/bin/alleleCounter.pl make[2]: Leaving directory '/build/allelecount-IY8NPV/allelecount-4.3.0/perl' make[1]: Leaving directory '/build/allelecount-IY8NPV/allelecount-4.3.0' dh_install -i dh_installdocs -i dh_installchangelogs -i dh_installman -i dh_lintian -i dh_perl -i dh_link -i dh_strip_nondeterminism -i dh_compress -i dh_fixperms -i dh_missing -i dh_installdeb -i dh_gencontrol -i dh_md5sums -i dh_builddeb -i dpkg-deb: building package 'liballelecount-perl' in '../liballelecount-perl_4.3.0-1.1_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../allelecount_4.3.0-1.1_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/allelecount-IY8NPV /tmp/allelecount-4.3.0-1.1hkx5r6jv I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.I285aL3Wbr... I: success in 292.4075 seconds md5: liballelecount-perl_4.3.0-1.1_all.deb: OK sha1: liballelecount-perl_4.3.0-1.1_all.deb: OK sha256: liballelecount-perl_4.3.0-1.1_all.deb: OK Checksums: OK